Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230320 | XP_013463481.1 | 76.133 | 331 | 46 | 5 | 1 | 300 | 1 | 329 | 1.33e-169 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230320 | sp|P51614|CHIT3_VITVI | 47.518 | 282 | 132 | 8 | 1 | 274 | 1 | 274 | 6.49e-79 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230320 | A0A072V7A7 | 76.133 | 331 | 46 | 5 | 1 | 300 | 1 | 329 | 6.33e-170 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053860 | Msa0230320 | 0.819310 | 1.241835e-52 | -8.615850e-47 |
| Msa0072720 | Msa0230320 | 0.807336 | 5.313417e-50 | -8.615850e-47 |
| Msa0103770 | Msa0230320 | 0.805305 | 1.423613e-49 | -8.615850e-47 |
| Msa0104670 | Msa0230320 | 0.805797 | 1.122522e-49 | -8.615850e-47 |
| Msa0108410 | Msa0230320 | 0.803117 | 4.061813e-49 | -8.615850e-47 |
| Msa0124320 | Msa0230320 | 0.807302 | 5.401210e-50 | -8.615850e-47 |
| Msa0160960 | Msa0230320 | 0.801883 | 7.295364e-49 | -8.615850e-47 |
| Msa0173800 | Msa0230320 | 0.805851 | 1.093443e-49 | -8.615850e-47 |
| Msa0195080 | Msa0230320 | 0.883288 | 5.092089e-71 | -8.615850e-47 |
| Msa0195100 | Msa0230320 | 0.978865 | 9.955020e-147 | -8.615850e-47 |
| Msa0195110 | Msa0230320 | 0.870010 | 2.014831e-66 | -8.615850e-47 |
| Msa0202800 | Msa0230320 | 0.960877 | 4.676595e-119 | -8.615850e-47 |
| Msa0230320 | Msa0232020 | 0.803332 | 3.665921e-49 | -8.615850e-47 |
| Msa0230320 | Msa0234090 | 0.813890 | 2.035801e-51 | -8.615850e-47 |
| Msa0230320 | Msa0241140 | 0.809384 | 1.943390e-50 | -8.615850e-47 |
| Msa0230320 | Msa0245900 | 0.868978 | 4.365816e-66 | -8.615850e-47 |
| Msa0230320 | Msa0284480 | 0.867107 | 1.745665e-65 | -8.615850e-47 |
| Msa0230320 | Msa0287870 | 0.829307 | 5.539092e-55 | -8.615850e-47 |
| Msa0230320 | Msa0290870 | 0.823258 | 1.525938e-53 | -8.615850e-47 |
| Msa0230320 | Msa0308630 | 0.983485 | 7.142317e-158 | -8.615850e-47 |
| Msa0230320 | Msa0317970 | 0.808935 | 2.425121e-50 | -8.615850e-47 |
| Msa0230320 | Msa0322530 | 0.854155 | 1.485688e-61 | -8.615850e-47 |
| Msa0230320 | Msa0322540 | 0.882614 | 8.985282e-71 | -8.615850e-47 |
| Msa0230320 | Msa0336320 | 0.815673 | 8.196375e-52 | -8.615850e-47 |
| Msa0230320 | Msa0343850 | 0.802810 | 4.702244e-49 | -8.615850e-47 |
| Msa0230320 | Msa0363790 | 0.810197 | 1.299479e-50 | -8.615850e-47 |
| Msa0230320 | Msa0367870 | 0.824711 | 6.959725e-54 | -8.615850e-47 |
| Msa0230320 | Msa0381610 | -0.808714 | 2.703455e-50 | -8.615850e-47 |
| Msa0230320 | Msa0382370 | 0.811929 | 5.474793e-51 | -8.615850e-47 |
| Msa0230320 | Msa0389770 | 0.967805 | 8.726689e-128 | -8.615850e-47 |
| Msa0230320 | Msa0432160 | 0.834348 | 3.157980e-56 | -8.615850e-47 |
| Msa0230320 | Msa0432670 | 0.820575 | 6.380136e-53 | -8.615850e-47 |
| Msa0230320 | Msa0448340 | 0.810216 | 1.287115e-50 | -8.615850e-47 |
| Msa0230320 | Msa0450400 | -0.800438 | 1.441208e-48 | -8.615850e-47 |
| Msa0230320 | Msa0460590 | 0.832147 | 1.116076e-55 | -8.615850e-47 |
| Msa0230320 | Msa0476680 | 0.838671 | 2.503979e-57 | -8.615850e-47 |
| Msa0230320 | Msa0521010 | 0.837209 | 5.950753e-57 | -8.615850e-47 |
| Msa0230320 | Msa0526070 | -0.805791 | 1.125441e-49 | -8.615850e-47 |
| Msa0230320 | Msa0545850 | 0.811545 | 6.636818e-51 | -8.615850e-47 |
| Msa0230320 | Msa0559500 | 0.815666 | 8.225267e-52 | -8.615850e-47 |
| Msa0230320 | Msa0613110 | 0.809200 | 2.127851e-50 | -8.615850e-47 |
| Msa0230320 | Msa0613710 | 0.811645 | 6.311192e-51 | -8.615850e-47 |
| Msa0230320 | Msa0622170 | -0.808725 | 2.688908e-50 | -8.615850e-47 |
| Msa0230320 | Msa0636500 | 0.816525 | 5.286851e-52 | -8.615850e-47 |
| Msa0230320 | Msa0680660 | 0.813332 | 2.700848e-51 | -8.615850e-47 |
| Msa0230320 | Msa0696850 | 0.808287 | 3.335689e-50 | -8.615850e-47 |
| Msa0230320 | Msa0709270 | 0.834924 | 2.262427e-56 | -8.615850e-47 |
| Msa0230320 | Msa0733010 | 0.806866 | 6.679475e-50 | -8.615850e-47 |
| Msa0230320 | Msa0736600 | 0.808001 | 3.837908e-50 | -8.615850e-47 |
| Msa0230320 | Msa0738340 | 0.810562 | 1.083781e-50 | -8.615850e-47 |
| Msa0230320 | Msa0743930 | 0.810615 | 1.055522e-50 | -8.615850e-47 |
| Msa0230320 | Msa0756380 | 0.804188 | 2.435699e-49 | -8.615850e-47 |
| Msa0230320 | Msa0759480 | 0.805019 | 1.633641e-49 | -8.615850e-47 |
| Msa0230320 | Msa0759490 | 0.808048 | 3.749853e-50 | -8.615850e-47 |
| Msa0230320 | Msa0784480 | 0.809569 | 1.773110e-50 | -8.615850e-47 |
| Msa0230320 | Msa0797770 | 0.811872 | 5.633193e-51 | -8.615850e-47 |
| Msa0230320 | Msa0813000 | 0.803367 | 3.606811e-49 | -8.615850e-47 |
| Msa0230320 | Msa0817460 | 0.821704 | 3.504041e-53 | -8.615850e-47 |
| Msa0230320 | Msa0818060 | 0.811799 | 5.843106e-51 | -8.615850e-47 |
| Msa0230320 | Msa0832340 | 0.820185 | 7.840614e-53 | -8.615850e-47 |
| Msa0230320 | Msa0833520 | 0.801847 | 7.423279e-49 | -8.615850e-47 |
| Msa0230320 | Msa0835230 | 0.813145 | 2.967928e-51 | -8.615850e-47 |
| Msa0230320 | Msa0844490 | 0.832748 | 7.919397e-56 | -8.615850e-47 |
| Msa0230320 | Msa0846860 | 0.807176 | 5.745074e-50 | -8.615850e-47 |
| Msa0230320 | Msa0853520 | 0.819828 | 9.462617e-53 | -8.615850e-47 |
| Msa0230320 | Msa0855870 | 0.836137 | 1.115747e-56 | -8.615850e-47 |
| Msa0230320 | Msa0859070 | 0.802408 | 5.690500e-49 | -8.615850e-47 |
| Msa0230320 | Msa0870380 | 0.829531 | 4.886743e-55 | -8.615850e-47 |
| Msa0230320 | Msa0894710 | 0.805858 | 1.089609e-49 | -8.615850e-47 |
| Msa0230320 | Msa0899970 | 0.814140 | 1.792967e-51 | -8.615850e-47 |
| Msa0230320 | Msa0914270 | 0.803148 | 4.003762e-49 | -8.615850e-47 |
| Msa0230320 | Msa0934140 | 0.807754 | 4.330632e-50 | -8.615850e-47 |
| Msa0230320 | Msa0936060 | 0.807132 | 5.868059e-50 | -8.615850e-47 |
| Msa0230320 | Msa0936390 | 0.802078 | 6.652301e-49 | -8.615850e-47 |
| Msa0230320 | Msa0960390 | 0.805674 | 1.191007e-49 | -8.615850e-47 |
| Msa0230320 | Msa0965080 | 0.818257 | 2.154662e-52 | -8.615850e-47 |
| Msa0230320 | Msa0965290 | 0.821492 | 3.922626e-53 | -8.615850e-47 |
| Msa0230320 | Msa0972960 | 0.824014 | 1.015080e-53 | -8.615850e-47 |
| Msa0230320 | Msa0980200 | 0.800240 | 1.581090e-48 | -8.615850e-47 |
| Msa0230320 | Msa0986510 | 0.812098 | 5.030661e-51 | -8.615850e-47 |
| Msa0230320 | Msa0999680 | 0.822727 | 2.029537e-53 | -8.615850e-47 |
| Msa0230320 | Msa1002960 | 0.802645 | 5.086207e-49 | -8.615850e-47 |
| Msa0230320 | Msa1019150 | 0.817302 | 3.539063e-52 | -8.615850e-47 |
| Msa0230320 | Msa1026480 | 0.801099 | 1.056245e-48 | -8.615850e-47 |
| Msa0230320 | Msa1034500 | 0.820578 | 6.371521e-53 | -8.615850e-47 |
| Msa0230320 | Msa1036610 | 0.809546 | 1.794084e-50 | -8.615850e-47 |
| Msa0230320 | Msa1039710 | -0.804958 | 1.682495e-49 | -8.615850e-47 |
| Msa0230320 | Msa1040980 | 0.807915 | 4.002396e-50 | -8.615850e-47 |
| Msa0230320 | Msa1043760 | 0.824228 | 9.042572e-54 | -8.615850e-47 |
| Msa0230320 | Msa1079430 | 0.813291 | 2.756848e-51 | -8.615850e-47 |
| Msa0230320 | Msa1121480 | 0.805489 | 1.302177e-49 | -8.615850e-47 |
| Msa0230320 | Msa1121490 | 0.809169 | 2.161296e-50 | -8.615850e-47 |
| Msa0230320 | Msa1131050 | 0.803594 | 3.235392e-49 | -8.615850e-47 |
| Msa0230320 | Msa1144450 | 0.805049 | 1.610563e-49 | -8.615850e-47 |
| Msa0230320 | Msa1147740 | 0.816188 | 6.290560e-52 | -8.615850e-47 |
| Msa0230320 | Msa1177560 | 0.827282 | 1.704915e-54 | -8.615850e-47 |
| Msa0230320 | Msa1185110 | 0.810610 | 1.057960e-50 | -8.615850e-47 |
| Msa0230320 | Msa1188180 | 0.804298 | 2.310220e-49 | -8.615850e-47 |
| Msa0230320 | Msa1212050 | 0.802175 | 6.355879e-49 | -8.615850e-47 |
| Msa0230320 | Msa1212130 | 0.816049 | 6.756799e-52 | -8.615850e-47 |
| Msa0230320 | Msa1225860 | -0.800116 | 1.676006e-48 | -8.615850e-47 |
| Msa0230320 | Msa1226460 | 0.837824 | 4.138929e-57 | -8.615850e-47 |
| Msa0230320 | Msa1238820 | 0.803027 | 4.241053e-49 | -8.615850e-47 |
| Msa0230320 | Msa1243870 | 0.811334 | 7.373332e-51 | -8.615850e-47 |
| Msa0230320 | Msa1259860 | 0.810495 | 1.120718e-50 | -8.615850e-47 |
| Msa0230320 | Msa1271130 | 0.816746 | 4.716891e-52 | -8.615850e-47 |
| Msa0230320 | Msa1277690 | 0.803222 | 3.863899e-49 | -8.615850e-47 |
| Msa0230320 | Msa1284900 | 0.812709 | 3.698291e-51 | -8.615850e-47 |
| Msa0230320 | Msa1285550 | 0.805254 | 1.459007e-49 | -8.615850e-47 |
| Msa0230320 | Msa1286800 | 0.810416 | 1.165112e-50 | -8.615850e-47 |
| Msa0230320 | Msa1304890 | -0.800922 | 1.148253e-48 | -8.615850e-47 |
| Msa0230320 | Msa1315420 | 0.841777 | 3.867856e-58 | -8.615850e-47 |
| Msa0230320 | Msa1342380 | 0.801767 | 7.709727e-49 | -8.615850e-47 |
| Msa0230320 | Msa1351740 | 0.815760 | 7.836334e-52 | -8.615850e-47 |
| Msa0230320 | Msa1355450 | 0.813955 | 1.969300e-51 | -8.615850e-47 |
| Msa0230320 | Msa1358070 | 0.804453 | 2.144468e-49 | -8.615850e-47 |
| Msa0230320 | Msa1369920 | -0.800449 | 1.433815e-48 | -8.615850e-47 |
| Msa0230320 | Msa1384280 | 0.804932 | 1.703648e-49 | -8.615850e-47 |
| Msa0230320 | Msa1386890 | 0.821210 | 4.557113e-53 | -8.615850e-47 |
| Msa0230320 | Msa1390700 | 0.815462 | 9.132820e-52 | -8.615850e-47 |
| Msa0230320 | Msa1392210 | 0.805503 | 1.293406e-49 | -8.615850e-47 |
| Msa0230320 | Msa1392910 | 0.811156 | 8.058280e-51 | -8.615850e-47 |
| Msa0230320 | Msa1410630 | 0.810995 | 8.735087e-51 | -8.615850e-47 |
| Msa0230320 | Msa1411050 | 0.805661 | 1.198841e-49 | -8.615850e-47 |
| Msa0230320 | Msa1419690 | 0.805866 | 1.085495e-49 | -8.615850e-47 |
| Msa0230320 | Msa1423780 | 0.980302 | 6.592667e-150 | -8.615850e-47 |
| Msa0230320 | Msa1425090 | 0.805967 | 1.033491e-49 | -8.615850e-47 |
| Msa0230320 | Msa1442920 | 0.827453 | 1.551280e-54 | -8.615850e-47 |
| Msa0230320 | Msa1448560 | 0.818118 | 2.315781e-52 | -8.615850e-47 |
| Msa0230320 | Msa1456230 | 0.821135 | 4.741860e-53 | -8.615850e-47 |
| Msa0230320 | Msa1458340 | 0.811508 | 6.761089e-51 | -8.615850e-47 |
| Msa0230320 | Msa1458680 | 0.829752 | 4.316804e-55 | -8.615850e-47 |
| Msa0230320 | Msa1459100 | 0.800336 | 1.511889e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230320 | MtrunA17_Chr2g0300141 | 76.133 | 331 | 46 | 5 | 1 | 300 | 1 | 329 | 1.22e-173 | 483 |
| Msa0230320 | MtrunA17_Chr2g0300081 | 73.574 | 333 | 53 | 6 | 1 | 300 | 1 | 331 | 7.34e-166 | 463 |
| Msa0230320 | MtrunA17_Chr2g0300101 | 73.716 | 331 | 53 | 7 | 1 | 300 | 1 | 328 | 9.05e-159 | 445 |
| Msa0230320 | MtrunA17_Chr2g0300051 | 75.684 | 329 | 47 | 6 | 1 | 300 | 1 | 325 | 1.80e-157 | 442 |
| Msa0230320 | MtrunA17_Chr2g0300181 | 52.836 | 335 | 120 | 6 | 1 | 300 | 1 | 332 | 2.44e-111 | 325 |
| Msa0230320 | MtrunA17_Chr5g0418461 | 55.319 | 235 | 94 | 5 | 24 | 253 | 21 | 249 | 2.57e-80 | 245 |
| Msa0230320 | MtrunA17_Chr1g0202241 | 47.697 | 304 | 137 | 10 | 1 | 290 | 1 | 296 | 4.36e-80 | 244 |
| Msa0230320 | MtrunA17_Chr7g0240891 | 48.276 | 261 | 121 | 7 | 5 | 257 | 2 | 256 | 3.80e-77 | 237 |
| Msa0230320 | MtrunA17_Chr1g0202231 | 46.667 | 270 | 132 | 7 | 11 | 275 | 10 | 272 | 1.11e-74 | 232 |
| Msa0230320 | MtrunA17_Chr2g0300161 | 69.540 | 174 | 49 | 2 | 1 | 171 | 1 | 173 | 2.60e-74 | 225 |
| Msa0230320 | MtrunA17_Chr1g0202261 | 49.225 | 258 | 118 | 8 | 23 | 274 | 20 | 270 | 9.41e-73 | 226 |
| Msa0230320 | MtrunA17_Chr2g0331781 | 46.970 | 264 | 122 | 8 | 7 | 257 | 13 | 271 | 2.03e-68 | 216 |
| Msa0230320 | MtrunA17_Chr7g0274861 | 44.758 | 248 | 106 | 5 | 11 | 253 | 9 | 230 | 5.48e-66 | 207 |
| Msa0230320 | MtrunA17_Chr7g0275231 | 43.262 | 282 | 142 | 9 | 2 | 274 | 4 | 276 | 9.83e-66 | 208 |
| Msa0230320 | MtrunA17_Chr1g0202281 | 46.185 | 249 | 119 | 8 | 24 | 267 | 38 | 276 | 2.26e-65 | 207 |
| Msa0230320 | MtrunA17_Chr8g0361941 | 46.899 | 258 | 122 | 9 | 8 | 257 | 6 | 256 | 6.26e-65 | 206 |
| Msa0230320 | MtrunA17_Chr2g0300171 | 65.753 | 146 | 22 | 1 | 183 | 300 | 1 | 146 | 3.21e-59 | 186 |
| Msa0230320 | MtrunA17_Chr2g0300151 | 53.548 | 155 | 58 | 4 | 1 | 144 | 1 | 152 | 9.75e-46 | 152 |
| Msa0230320 | MtrunA17_Chr6g0459141 | 43.636 | 110 | 56 | 2 | 24 | 129 | 23 | 130 | 5.03e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230320 | AT5G24090.1 | 45.487 | 277 | 140 | 7 | 3 | 274 | 5 | 275 | 1.25e-77 | 239 |
Find 62 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTTTCCTCAATGTCTT+TGG | 0.217357 | 2_2:-2365236 | Msa0230320:CDS |
| ATAAAACACTGTCAAGAAAA+AGG | 0.225882 | 2_2:-2365134 | Msa0230320:CDS |
| CCCATGAAAACGGTATTATT+TGG | 0.251275 | 2_2:+2362655 | None:intergenic |
| AACTTTCTTAGTGGTCAATT+TGG | 0.254606 | 2_2:-2365026 | Msa0230320:CDS |
| CACCAATGATCTCATTTCTA+AGG | 0.297078 | 2_2:-2362588 | Msa0230320:intron |
| TTACTTTCCCTCAGAGCATT+AGG | 0.302991 | 2_2:-2365101 | Msa0230320:CDS |
| AAGGAGGTACAAATCTTTAC+TGG | 0.304361 | 2_2:-2364959 | Msa0230320:CDS |
| GTTAAAATCAACACCATCTA+AGG | 0.310593 | 2_2:+2364986 | None:intergenic |
| ATGGTGGCATTGCCGTCTAC+TGG | 0.329897 | 2_2:-2365325 | Msa0230320:CDS |
| CTTGGAAGTGTTACCTTAGA+TGG | 0.333989 | 2_2:-2364999 | Msa0230320:CDS |
| CTCTATACTAACTTTCTTAG+TGG | 0.345832 | 2_2:-2365035 | Msa0230320:CDS |
| AGCACAAAATGGATACAAAA+AGG | 0.354708 | 2_2:-2365412 | None:intergenic |
| TAATTTCGAGATTGTACTCT+TGG | 0.374143 | 2_2:-2365255 | Msa0230320:CDS |
| CTTGACAAAGCTATCAAAAC+TGG | 0.380969 | 2_2:-2362796 | Msa0230320:CDS |
| GTAATCTGGCATATAACATT+GGG | 0.392231 | 2_2:+2362822 | None:intergenic |
| GCGTATAATATGATTTAATT+CGG | 0.393756 | 2_2:+2362377 | None:intergenic |
| TGGTGGCATTGCCGTCTACT+GGG | 0.405455 | 2_2:-2365324 | Msa0230320:CDS |
| GCTTTCCTCAATGTCTTTGG+AGG | 0.413044 | 2_2:-2365233 | Msa0230320:CDS |
| TGATTTGCAAAGTTCAAACT+TGG | 0.417925 | 2_2:+2365200 | None:intergenic |
| TAGCTTCTTCTGGTGAGCTA+AGG | 0.426254 | 2_2:+2365075 | None:intergenic |
| TGATTACAGCTATCAGATAA+AGG | 0.427044 | 2_2:-2362489 | Msa0230320:intron |
| CTACATTGCTCTTAAAATCA+TGG | 0.429928 | 2_2:-2362702 | Msa0230320:CDS |
| TTCCTCAATGTCTTTGGAGG+AGG | 0.446588 | 2_2:-2365230 | Msa0230320:CDS |
| AGCTTCTTCTGGTGAGCTAA+GGG | 0.448193 | 2_2:+2365076 | None:intergenic |
| ACAATCTAAGACAACAAAAC+AGG | 0.458920 | 2_2:-2364914 | Msa0230320:intron |
| TCTTAAAATCATGGAATGCT+TGG | 0.464778 | 2_2:-2362693 | Msa0230320:CDS |
| CAAGTTTCAGAGGCAATAGC+TGG | 0.480314 | 2_2:-2362431 | Msa0230320:CDS |
| AACCTTAGAAATGAGATCAT+TGG | 0.481453 | 2_2:+2362586 | None:intergenic |
| TTTGTTGTCTTAGATTGTCA+AGG | 0.485852 | 2_2:+2364919 | None:intergenic |
| GCTTTGTCAAGGTAGTAATC+TGG | 0.487955 | 2_2:+2362808 | None:intergenic |
| TTTACTGGGATGACCTTGCT+AGG | 0.501225 | 2_2:-2364944 | Msa0230320:CDS |
| AGTAATCTGGCATATAACAT+TGG | 0.524590 | 2_2:+2362821 | None:intergenic |
| GGAGCTGCATCAGGTGATGC+TGG | 0.526731 | 2_2:+2362628 | None:intergenic |
| CACTAAGAAAGTTAGTATAG+AGG | 0.529347 | 2_2:+2365036 | None:intergenic |
| TGCTGGTAGTCCCATGAAAA+CGG | 0.529775 | 2_2:+2362645 | None:intergenic |
| GGCAATAGCTGGATGTATCT+CGG | 0.544718 | 2_2:-2362420 | Msa0230320:CDS |
| CCACCACTAGGAGCTGCATC+AGG | 0.548590 | 2_2:+2362619 | None:intergenic |
| TATGATTTAATTCGGAAACA+TGG | 0.564143 | 2_2:+2362385 | None:intergenic |
| CTTAGAAATGAGATCATTGG+TGG | 0.564294 | 2_2:+2362589 | None:intergenic |
| GATTTGCAAAGTTCAAACTT+GGG | 0.564533 | 2_2:+2365201 | None:intergenic |
| AGTGGTCAATTTGGTCCACT+TGG | 0.566066 | 2_2:-2365017 | Msa0230320:CDS |
| AAGGGCTCCTAATGCTCTGA+GGG | 0.572834 | 2_2:+2365094 | None:intergenic |
| TTGAACTTTGCAAATCATTG+TGG | 0.576615 | 2_2:-2365194 | Msa0230320:CDS |
| TTCCTCCTCCAAAGACATTG+AGG | 0.584718 | 2_2:+2365228 | None:intergenic |
| TGATGATGCTTTGATAGTGA+AGG | 0.585896 | 2_2:+2365352 | None:intergenic |
| TTACTGGGATGACCTTGCTA+GGG | 0.587273 | 2_2:-2364943 | Msa0230320:CDS |
| AGGAGGTACAAATCTTTACT+GGG | 0.587554 | 2_2:-2364958 | Msa0230320:CDS |
| TGGGGCCAAAACGTAAAAGA+AGG | 0.591748 | 2_2:-2365305 | Msa0230320:CDS |
| GATTGTCAAGGTCCCTAGCA+AGG | 0.595500 | 2_2:+2364931 | None:intergenic |
| ATATTGTCAAGACTAACAAA+AGG | 0.600315 | 2_2:+2365378 | None:intergenic |
| ATCAAAGCATCATCAAGTGA+TGG | 0.610130 | 2_2:-2365344 | Msa0230320:CDS |
| TTGACATCAACATGTGACAC+TGG | 0.615620 | 2_2:-2365278 | Msa0230320:CDS |
| GATGATGCTTTGATAGTGAA+GGG | 0.636457 | 2_2:+2365353 | None:intergenic |
| AAAGCATCATCAAGTGATGG+TGG | 0.646449 | 2_2:-2365341 | Msa0230320:CDS |
| TCACCTGATGCAGCTCCTAG+TGG | 0.649095 | 2_2:-2362622 | Msa0230320:CDS |
| TAAGGGCTCCTAATGCTCTG+AGG | 0.652053 | 2_2:+2365093 | None:intergenic |
| CCTGATGCAGCTCCTAGTGG+TGG | 0.652514 | 2_2:-2362619 | Msa0230320:CDS |
| GGTGGCATTGCCGTCTACTG+GGG | 0.654303 | 2_2:-2365323 | Msa0230320:CDS |
| AGTGTCACATGTTGATGTCA+AGG | 0.656681 | 2_2:+2365280 | None:intergenic |
| GGTGGTATATAACCACCACT+AGG | 0.690618 | 2_2:+2362607 | None:intergenic |
| TAATCTGGCATATAACATTG+GGG | 0.697221 | 2_2:+2362823 | None:intergenic |
| TCTAAGGTAACACTTCCAAG+TGG | 0.714737 | 2_2:+2365002 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTCTTTGAAAAAAA+TGG | + | chr2_2:2363358-2363377 | None:intergenic | 10.0% |
| !! | AATATGAGAAAATATAATAT+AGG | - | chr2_2:2363464-2363483 | Msa0230320:intron | 10.0% |
| !! | TAATAAATATTTACCATTTA+TGG | - | chr2_2:2364584-2364603 | Msa0230320:intron | 10.0% |
| !!! | AATGATGTTTTTTTTTTTAT+GGG | + | chr2_2:2364787-2364806 | None:intergenic | 10.0% |
| !!! | AAATGATGTTTTTTTTTTTA+TGG | + | chr2_2:2364788-2364807 | None:intergenic | 10.0% |
| !!! | TTTTCAAAGAAAAATATGTA+TGG | - | chr2_2:2363361-2363380 | Msa0230320:intron | 15.0% |
| !!! | TATCCATTCTAAAATTATTA+TGG | + | chr2_2:2363790-2363809 | None:intergenic | 15.0% |
| !! | TACTTATGTTACAAATATTT+GGG | + | chr2_2:2364035-2364054 | None:intergenic | 15.0% |
| !! | ATACTTATGTTACAAATATT+TGG | + | chr2_2:2364036-2364055 | None:intergenic | 15.0% |
| !!! | GGAAAATACTTTTTTTTTTA+GGG | + | chr2_2:2364070-2364089 | None:intergenic | 15.0% |
| !!! | TTAATTTATTGATTTATGAC+AGG | + | chr2_2:2364707-2364726 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATCATATTGACA+TGG | + | chr2_2:2365065-2365084 | None:intergenic | 15.0% |
| !!! | TAGTACTTTTTTTTTGAATC+GGG | + | chr2_2:2362957-2362976 | None:intergenic | 20.0% |
| !!! | CTAGTACTTTTTTTTTGAAT+CGG | + | chr2_2:2362958-2362977 | None:intergenic | 20.0% |
| !!! | TTTTTTATAAAATTGGGATG+TGG | + | chr2_2:2363085-2363104 | None:intergenic | 20.0% |
| !! | TAAAGAAATATATCATGACA+TGG | + | chr2_2:2363202-2363221 | None:intergenic | 20.0% |
| !! | AAATATAATGTGAGTATAAG+AGG | - | chr2_2:2363412-2363431 | Msa0230320:intron | 20.0% |
| !! | ATATTCACATTATACACTTT+AGG | + | chr2_2:2363449-2363468 | None:intergenic | 20.0% |
| !!! | TGCTTACTTTTATTTATGTT+TGG | + | chr2_2:2363624-2363643 | None:intergenic | 20.0% |
| !! | TAGAATGGATATAGTAAAAA+AGG | - | chr2_2:2363799-2363818 | Msa0230320:intron | 20.0% |
| !! | AGTATTATATGAACTAGTAT+TGG | - | chr2_2:2363860-2363879 | Msa0230320:intron | 20.0% |
| !!! | CTTTTTTTTTTAGGGAAATA+CGG | + | chr2_2:2364062-2364081 | None:intergenic | 20.0% |
| !!! | CGGAAAATACTTTTTTTTTT+AGG | + | chr2_2:2364071-2364090 | None:intergenic | 20.0% |
| !!! | TTTAACTTAAGAAAGTAGAA+TGG | - | chr2_2:2364229-2364248 | Msa0230320:intron | 20.0% |
| !! | AGCATAATGCTATAATATAT+TGG | - | chr2_2:2364639-2364658 | Msa0230320:intron | 20.0% |
| !! | GCATAATGCTATAATATATT+GGG | - | chr2_2:2364640-2364659 | Msa0230320:intron | 20.0% |
| !! | ATCTTTAAATTAAAGTGTAC+CGG | - | chr2_2:2364677-2364696 | Msa0230320:intron | 20.0% |
| !!! | AAAGGTTGATTTGTTAATTA+GGG | + | chr2_2:2364886-2364905 | None:intergenic | 20.0% |
| !!! | AAAAGGTTGATTTGTTAATT+AGG | + | chr2_2:2364887-2364906 | None:intergenic | 20.0% |
| ! | ATATTGTCAAGACTAACAAA+AGG | + | chr2_2:2362420-2362439 | None:intergenic | 25.0% |
| !!! | TTCTTGACAGTGTTTTATTT+CGG | + | chr2_2:2362659-2362678 | None:intergenic | 25.0% |
| ! | ATAAAACACTGTCAAGAAAA+AGG | - | chr2_2:2362661-2362680 | Msa0230320:CDS | 25.0% |
| ! | TAAAACACTGTCAAGAAAAA+GGG | - | chr2_2:2362662-2362681 | Msa0230320:CDS | 25.0% |
| ! | TTAGGATGTTAAATAAAACG+TGG | + | chr2_2:2363328-2363347 | None:intergenic | 25.0% |
| ! | GAAAAAAATGGTTGTTCATT+AGG | + | chr2_2:2363346-2363365 | None:intergenic | 25.0% |
| !!! | GCTCCATAATAATTTTAGAA+TGG | - | chr2_2:2363784-2363803 | Msa0230320:intron | 25.0% |
| !! | TTATATGAACTAGTATTGGA+TGG | - | chr2_2:2363864-2363883 | Msa0230320:intron | 25.0% |
| !! | CAAAAATTTTCACTTGTCTT+CGG | + | chr2_2:2364272-2364291 | None:intergenic | 25.0% |
| ! | TGCAAATAAACGGATATAAT+TGG | - | chr2_2:2364403-2364422 | Msa0230320:intron | 25.0% |
| !! | GTTGAAATTTTACAATCTCA+GGG | - | chr2_2:2364425-2364444 | Msa0230320:intron | 25.0% |
| !! | TTGAAATTTTACAATCTCAG+GGG | - | chr2_2:2364426-2364445 | Msa0230320:intron | 25.0% |
| ! | TAATATATTGGGAGTTTCTA+CGG | - | chr2_2:2364651-2364670 | Msa0230320:intron | 25.0% |
| !!! | GAGATTTTTTTTTTTGAGAG+AGG | + | chr2_2:2364924-2364943 | None:intergenic | 25.0% |
| ! | CAAAAAAAAAAATCTCTTGC+AGG | - | chr2_2:2364928-2364947 | Msa0230320:CDS | 25.0% |
| !! | TTTTATCATATTGACATGGA+GGG | + | chr2_2:2365061-2365080 | None:intergenic | 25.0% |
| !! | TTTTTATCATATTGACATGG+AGG | + | chr2_2:2365062-2365081 | None:intergenic | 25.0% |
| TAATTTCGAGATTGTACTCT+TGG | - | chr2_2:2362540-2362559 | Msa0230320:intron | 30.0% | |
| GATTTGCAAAGTTCAAACTT+GGG | + | chr2_2:2362597-2362616 | None:intergenic | 30.0% | |
| ! | TGATTTGCAAAGTTCAAACT+TGG | + | chr2_2:2362598-2362617 | None:intergenic | 30.0% |
| TTGAACTTTGCAAATCATTG+TGG | - | chr2_2:2362601-2362620 | Msa0230320:CDS | 30.0% | |
| CACTAAGAAAGTTAGTATAG+AGG | + | chr2_2:2362762-2362781 | None:intergenic | 30.0% | |
| CTCTATACTAACTTTCTTAG+TGG | - | chr2_2:2362760-2362779 | Msa0230320:CDS | 30.0% | |
| AACTTTCTTAGTGGTCAATT+TGG | - | chr2_2:2362769-2362788 | Msa0230320:CDS | 30.0% | |
| GTTAAAATCAACACCATCTA+AGG | + | chr2_2:2362812-2362831 | None:intergenic | 30.0% | |
| !!! | GGTGTTGATTTTAACATTGA+AGG | - | chr2_2:2362817-2362836 | Msa0230320:CDS | 30.0% |
| !! | GTTGATTTTAACATTGAAGG+AGG | - | chr2_2:2362820-2362839 | Msa0230320:CDS | 30.0% |
| ! | TTTGTTGTCTTAGATTGTCA+AGG | + | chr2_2:2362879-2362898 | None:intergenic | 30.0% |
| ! | ACAATCTAAGACAACAAAAC+AGG | - | chr2_2:2362881-2362900 | Msa0230320:intron | 30.0% |
| !! | TATAGTTTCAAGTTGTACAG+CGG | + | chr2_2:2362998-2363017 | None:intergenic | 30.0% |
| TATTGGATGGACACAATATA+AGG | - | chr2_2:2363877-2363896 | Msa0230320:intron | 30.0% | |
| ATTGGATGGACACAATATAA+GGG | - | chr2_2:2363878-2363897 | Msa0230320:intron | 30.0% | |
| TCCGTATTAAATATGCAAAC+TGG | - | chr2_2:2364087-2364106 | Msa0230320:intron | 30.0% | |
| CCCAGTTTGCATATTTAATA+CGG | + | chr2_2:2364091-2364110 | None:intergenic | 30.0% | |
| CCGTATTAAATATGCAAACT+GGG | - | chr2_2:2364088-2364107 | Msa0230320:intron | 30.0% | |
| CACTTCAAATTAAGTTCTCA+GGG | + | chr2_2:2364169-2364188 | None:intergenic | 30.0% | |
| TCACTTCAAATTAAGTTCTC+AGG | + | chr2_2:2364170-2364189 | None:intergenic | 30.0% | |
| TGGTGCAAAATAAATTTCTC+AGG | - | chr2_2:2364371-2364390 | Msa0230320:intron | 30.0% | |
| GGTGCAAAATAAATTTCTCA+GGG | - | chr2_2:2364372-2364391 | Msa0230320:intron | 30.0% | |
| ! | GGTTGAAATTTTACAATCTC+AGG | - | chr2_2:2364424-2364443 | Msa0230320:intron | 30.0% |
| ! | TGAAATTTTACAATCTCAGG+GGG | - | chr2_2:2364427-2364446 | Msa0230320:intron | 30.0% |
| CATGTTAAGGATTCCATAAA+TGG | + | chr2_2:2364600-2364619 | None:intergenic | 30.0% | |
| TATGCTAACTTGAGTTCTTA+AGG | + | chr2_2:2364625-2364644 | None:intergenic | 30.0% | |
| TAATCTGGCATATAACATTG+GGG | + | chr2_2:2364975-2364994 | None:intergenic | 30.0% | |
| GTAATCTGGCATATAACATT+GGG | + | chr2_2:2364976-2364995 | None:intergenic | 30.0% | |
| AGTAATCTGGCATATAACAT+TGG | + | chr2_2:2364977-2364996 | None:intergenic | 30.0% | |
| CTACATTGCTCTTAAAATCA+TGG | - | chr2_2:2365093-2365112 | Msa0230320:CDS | 30.0% | |
| TCTTAAAATCATGGAATGCT+TGG | - | chr2_2:2365102-2365121 | Msa0230320:CDS | 30.0% | |
| ! | ACCAAATAATACCGTTTTCA+TGG | - | chr2_2:2365139-2365158 | Msa0230320:CDS | 30.0% |
| ! | CCAAATAATACCGTTTTCAT+GGG | - | chr2_2:2365140-2365159 | Msa0230320:CDS | 30.0% |
| AACCTTAGAAATGAGATCAT+TGG | + | chr2_2:2365212-2365231 | None:intergenic | 30.0% | |
| ! | ATAGTTGGAAGTTGGTTTAA+TGG | + | chr2_2:2365242-2365261 | None:intergenic | 30.0% |
| ATTAAACCAACTTCCAACTA+TGG | - | chr2_2:2365241-2365260 | Msa0230320:CDS | 30.0% | |
| TGATTACAGCTATCAGATAA+AGG | - | chr2_2:2365306-2365325 | Msa0230320:CDS | 30.0% | |
| !!! | TTTTAAGACACAAGTTTCAG+AGG | - | chr2_2:2365354-2365373 | Msa0230320:CDS | 30.0% |
| !! | GATGATGCTTTGATAGTGAA+GGG | + | chr2_2:2362445-2362464 | None:intergenic | 35.0% |
| !! | TGATGATGCTTTGATAGTGA+AGG | + | chr2_2:2362446-2362465 | None:intergenic | 35.0% |
| ! | ATCAAAGCATCATCAAGTGA+TGG | - | chr2_2:2362451-2362470 | Msa0230320:CDS | 35.0% |
| !!! | GAAACAGTTTTAGCTTCTTC+TGG | + | chr2_2:2362733-2362752 | None:intergenic | 35.0% |
| ! | AAGGAGGTACAAATCTTTAC+TGG | - | chr2_2:2362836-2362855 | Msa0230320:CDS | 35.0% |
| ! | AGGAGGTACAAATCTTTACT+GGG | - | chr2_2:2362837-2362856 | Msa0230320:CDS | 35.0% |
| ! | AAGATGAAGAACCCTGTTTT+GGG | + | chr2_2:2363133-2363152 | None:intergenic | 35.0% |
| ATGACATGGAGATATCAGAA+AGG | + | chr2_2:2363188-2363207 | None:intergenic | 35.0% | |
| CTTATTCTTTACGCACACAA+AGG | + | chr2_2:2363250-2363269 | None:intergenic | 35.0% | |
| CTTTGTGTGCGTAAAGAATA+AGG | - | chr2_2:2363248-2363267 | Msa0230320:intron | 35.0% | |
| GTTAAATAAAACGTGGTGTC+TGG | + | chr2_2:2363321-2363340 | None:intergenic | 35.0% | |
| AAATATGCAAACTGGGAACT+TGG | - | chr2_2:2364095-2364114 | Msa0230320:intron | 35.0% | |
| ATGATCAAGACTTTAGCACA+TGG | + | chr2_2:2364121-2364140 | None:intergenic | 35.0% | |
| GAAGGTGAGATAAGAATAAC+TGG | - | chr2_2:2364315-2364334 | Msa0230320:intron | 35.0% | |
| ACATGTTAAGGAACTTAAGG+TGG | - | chr2_2:2364501-2364520 | Msa0230320:intron | 35.0% | |
| AGTTCTTAAGGCACATGTTA+AGG | + | chr2_2:2364613-2364632 | None:intergenic | 35.0% | |
| TTGATTTATGACAGGTGTAC+CGG | + | chr2_2:2364699-2364718 | None:intergenic | 35.0% | |
| ! | ATCAACCTTTTATCTCTTGC+AGG | - | chr2_2:2364896-2364915 | Msa0230320:intron | 35.0% |
| !!! | CAGTTTTGATAGCTTTGTCA+AGG | + | chr2_2:2365001-2365020 | None:intergenic | 35.0% |
| CTTGACAAAGCTATCAAAAC+TGG | - | chr2_2:2364999-2365018 | Msa0230320:CDS | 35.0% | |
| CCCATGAAAACGGTATTATT+TGG | + | chr2_2:2365143-2365162 | None:intergenic | 35.0% | |
| CTTAGAAATGAGATCATTGG+TGG | + | chr2_2:2365209-2365228 | None:intergenic | 35.0% | |
| CACCAATGATCTCATTTCTA+AGG | - | chr2_2:2365207-2365226 | Msa0230320:CDS | 35.0% | |
| ! | TTGGAAGTTGGTTTAATGGA+AGG | + | chr2_2:2365238-2365257 | None:intergenic | 35.0% |
| AAGCATAATTCCTCCATAGT+TGG | + | chr2_2:2365257-2365276 | None:intergenic | 35.0% | |
| ACTATGGAGGAATTATGCTT+TGG | - | chr2_2:2365257-2365276 | Msa0230320:CDS | 35.0% | |
| CTATGGAGGAATTATGCTTT+GGG | - | chr2_2:2365258-2365277 | Msa0230320:CDS | 35.0% | |
| TGGGATAGATTTCATGATGT+TGG | - | chr2_2:2365277-2365296 | Msa0230320:CDS | 35.0% | |
| ! | AAAGCATCATCAAGTGATGG+TGG | - | chr2_2:2362454-2362473 | Msa0230320:CDS | 40.0% |
| ! | AGGTGCCTTCTTTTACGTTT+TGG | + | chr2_2:2362498-2362517 | None:intergenic | 40.0% |
| AGTGTCACATGTTGATGTCA+AGG | + | chr2_2:2362518-2362537 | None:intergenic | 40.0% | |
| TTGACATCAACATGTGACAC+TGG | - | chr2_2:2362517-2362536 | Msa0230320:intron | 40.0% | |
| ! | TTGGCTTTCCTCAATGTCTT+TGG | - | chr2_2:2362559-2362578 | Msa0230320:intron | 40.0% |
| !! | CGGATTCGAGTTTTGTACAA+GGG | + | chr2_2:2362639-2362658 | None:intergenic | 40.0% |
| !! | TCGGATTCGAGTTTTGTACA+AGG | + | chr2_2:2362640-2362659 | None:intergenic | 40.0% |
| CTGTCAAGAAAAAGGGTTCA+AGG | - | chr2_2:2362669-2362688 | Msa0230320:CDS | 40.0% | |
| ! | TTACTTTCCCTCAGAGCATT+AGG | - | chr2_2:2362694-2362713 | Msa0230320:CDS | 40.0% |
| ! | TCTAAGGTAACACTTCCAAG+TGG | + | chr2_2:2362796-2362815 | None:intergenic | 40.0% |
| !! | CTTGGAAGTGTTACCTTAGA+TGG | - | chr2_2:2362796-2362815 | Msa0230320:CDS | 40.0% |
| ! | GAAGATGAAGAACCCTGTTT+TGG | + | chr2_2:2363134-2363153 | None:intergenic | 40.0% |
| GCGTAAAGAATAAGGTTGCT+TGG | - | chr2_2:2363256-2363275 | Msa0230320:intron | 40.0% | |
| !! | TTAACTTGTGCTCTTAGCAG+TGG | - | chr2_2:2363493-2363512 | Msa0230320:intron | 40.0% |
| CTCAAAGTGAAACAACATGC+TGG | - | chr2_2:2364351-2364370 | Msa0230320:intron | 40.0% | |
| GGTGTGCAAGTGCAAATAAA+CGG | - | chr2_2:2364393-2364412 | Msa0230320:intron | 40.0% | |
| GGCACATGTTAAGGAACTTA+AGG | - | chr2_2:2364498-2364517 | Msa0230320:intron | 40.0% | |
| AGGTACCTGCAAGAGATAAA+AGG | + | chr2_2:2364904-2364923 | None:intergenic | 40.0% | |
| ! | CAGGTACTTTTACTTGTCTG+CGG | - | chr2_2:2364947-2364966 | Msa0230320:CDS | 40.0% |
| GCTTTGTCAAGGTAGTAATC+TGG | + | chr2_2:2364990-2365009 | None:intergenic | 40.0% | |
| AAACCAACTTCCAACTATGG+AGG | - | chr2_2:2365244-2365263 | Msa0230320:CDS | 40.0% | |
| ATTCCTCCATAGTTGGAAGT+TGG | + | chr2_2:2365250-2365269 | None:intergenic | 40.0% | |
| TGGGGCCAAAACGTAAAAGA+AGG | - | chr2_2:2362490-2362509 | Msa0230320:intron | 45.0% | |
| GCTTTCCTCAATGTCTTTGG+AGG | - | chr2_2:2362562-2362581 | Msa0230320:intron | 45.0% | |
| ! | TTCCTCAATGTCTTTGGAGG+AGG | - | chr2_2:2362565-2362584 | Msa0230320:intron | 45.0% |
| TTCCTCCTCCAAAGACATTG+AGG | + | chr2_2:2362570-2362589 | None:intergenic | 45.0% | |
| !! | GAGTTTTGTACAAGGGCTCT+CGG | + | chr2_2:2362632-2362651 | None:intergenic | 45.0% |
| AGCTTCTTCTGGTGAGCTAA+GGG | + | chr2_2:2362722-2362741 | None:intergenic | 45.0% | |
| TAGCTTCTTCTGGTGAGCTA+AGG | + | chr2_2:2362723-2362742 | None:intergenic | 45.0% | |
| AGTGGTCAATTTGGTCCACT+TGG | - | chr2_2:2362778-2362797 | Msa0230320:CDS | 45.0% | |
| TTTACTGGGATGACCTTGCT+AGG | - | chr2_2:2362851-2362870 | Msa0230320:intron | 45.0% | |
| TTACTGGGATGACCTTGCTA+GGG | - | chr2_2:2362852-2362871 | Msa0230320:intron | 45.0% | |
| TCTTGACCACATCCCAAAAC+AGG | - | chr2_2:2363118-2363137 | Msa0230320:intron | 45.0% | |
| CTTGACCACATCCCAAAACA+GGG | - | chr2_2:2363119-2363138 | Msa0230320:intron | 45.0% | |
| !!! | AAGAACCCTGTTTTGGGATG+TGG | + | chr2_2:2363127-2363146 | None:intergenic | 45.0% |
| GCTTGGTAGACCAAAGAAAC+TGG | - | chr2_2:2363273-2363292 | Msa0230320:intron | 45.0% | |
| AGACCAAAGAAACTGGCATC+TGG | - | chr2_2:2363280-2363299 | Msa0230320:intron | 45.0% | |
| AAGCCAGATGCCAGTTTCTT+TGG | + | chr2_2:2363286-2363305 | None:intergenic | 45.0% | |
| AAAGAAACTGGCATCTGGCT+TGG | - | chr2_2:2363285-2363304 | Msa0230320:intron | 45.0% | |
| ! | AAGAAACTGGCATCTGGCTT+GGG | - | chr2_2:2363286-2363305 | Msa0230320:intron | 45.0% |
| ! | AAAACGTGGTGTCTGGTCTT+TGG | + | chr2_2:2363314-2363333 | None:intergenic | 45.0% |
| TCACCTTCTGACGCATAAAG+AGG | + | chr2_2:2364303-2364322 | None:intergenic | 45.0% | |
| AACATGTGCCCTAAGAACCA+GGG | + | chr2_2:2364488-2364507 | None:intergenic | 45.0% | |
| TAACATGTGCCCTAAGAACC+AGG | + | chr2_2:2364489-2364508 | None:intergenic | 45.0% | |
| GGTTCTTAGGGCACATGTTA+AGG | - | chr2_2:2364489-2364508 | Msa0230320:intron | 45.0% | |
| TGCTGGTAGTCCCATGAAAA+CGG | + | chr2_2:2365153-2365172 | None:intergenic | 45.0% | |
| GGTGGTATATAACCACCACT+AGG | + | chr2_2:2365191-2365210 | None:intergenic | 45.0% | |
| CAAGTTTCAGAGGCAATAGC+TGG | - | chr2_2:2365364-2365383 | Msa0230320:CDS | 45.0% | |
| GGCAATAGCTGGATGTATCT+CGG | - | chr2_2:2365375-2365394 | Msa0230320:CDS | 45.0% | |
| !!! | AATATCTTTTTTATAAAATT+GGG | + | chr2_2:2363091-2363110 | None:intergenic | 5.0% |
| !!! | AAATATCTTTTTTATAAAAT+TGG | + | chr2_2:2363092-2363111 | None:intergenic | 5.0% |
| !! | TACGTTTTGGCCCCAGTAGA+CGG | + | chr2_2:2362485-2362504 | None:intergenic | 50.0% |
| AAGGGCTCCTAATGCTCTGA+GGG | + | chr2_2:2362704-2362723 | None:intergenic | 50.0% | |
| TAAGGGCTCCTAATGCTCTG+AGG | + | chr2_2:2362705-2362724 | None:intergenic | 50.0% | |
| GATTGTCAAGGTCCCTAGCA+AGG | + | chr2_2:2362867-2362886 | None:intergenic | 50.0% | |
| GGCACGTGCAACACAGATTT+GGG | + | chr2_2:2363229-2363248 | None:intergenic | 50.0% | |
| AGGCACGTGCAACACAGATT+TGG | + | chr2_2:2363230-2363249 | None:intergenic | 50.0% | |
| GCACCTCTTTATGCGTCAGA+AGG | - | chr2_2:2364297-2364316 | Msa0230320:intron | 50.0% | |
| ! | TTTACAATCTCAGGGGGTGC+AGG | - | chr2_2:2364433-2364452 | Msa0230320:intron | 50.0% |
| ACATGTGCCCTAAGAACCAG+GGG | + | chr2_2:2364487-2364506 | None:intergenic | 50.0% | |
| ATGGTGGCATTGCCGTCTAC+TGG | - | chr2_2:2362470-2362489 | Msa0230320:CDS | 55.0% | |
| TGGTGGCATTGCCGTCTACT+GGG | - | chr2_2:2362471-2362490 | Msa0230320:CDS | 55.0% | |
| CTCTTAGCAGTGGCGTATCC+AGG | - | chr2_2:2363503-2363522 | Msa0230320:intron | 55.0% | |
| AGGTGCACACCCTCACTAAG+AGG | - | chr2_2:2364453-2364472 | Msa0230320:intron | 55.0% | |
| TGCACACCCTCACTAAGAGG+TGG | - | chr2_2:2364456-2364475 | Msa0230320:intron | 55.0% | |
| TCACCTGATGCAGCTCCTAG+TGG | - | chr2_2:2365173-2365192 | Msa0230320:CDS | 55.0% | |
| GGTGGCATTGCCGTCTACTG+GGG | - | chr2_2:2362472-2362491 | Msa0230320:CDS | 60.0% | |
| AGTGGCGTATCCAGGACCCT+GGG | - | chr2_2:2363511-2363530 | Msa0230320:intron | 60.0% | |
| GTATCCAGGACCCTGGGTCA+GGG | - | chr2_2:2363517-2363536 | Msa0230320:intron | 60.0% | |
| TATCCAGGACCCTGGGTCAG+GGG | - | chr2_2:2363518-2363537 | Msa0230320:intron | 60.0% | |
| !! | GTCAGGGGGTGCGGAGTTTT+TGG | - | chr2_2:2363533-2363552 | Msa0230320:intron | 60.0% |
| GCGGAGCCACCTCTTAGTGA+GGG | + | chr2_2:2364465-2364484 | None:intergenic | 60.0% | |
| TGTGCCCTAAGAACCAGGGG+CGG | + | chr2_2:2364484-2364503 | None:intergenic | 60.0% | |
| GGAGCTGCATCAGGTGATGC+TGG | + | chr2_2:2365170-2365189 | None:intergenic | 60.0% | |
| CCACCACTAGGAGCTGCATC+AGG | + | chr2_2:2365179-2365198 | None:intergenic | 60.0% | |
| CCTGATGCAGCTCCTAGTGG+TGG | - | chr2_2:2365176-2365195 | Msa0230320:CDS | 60.0% | |
| CAGTGGCGTATCCAGGACCC+TGG | - | chr2_2:2363510-2363529 | Msa0230320:intron | 65.0% | |
| CGTATCCAGGACCCTGGGTC+AGG | - | chr2_2:2363516-2363535 | Msa0230320:intron | 65.0% | |
| ATCCAGGACCCTGGGTCAGG+GGG | - | chr2_2:2363519-2363538 | Msa0230320:intron | 65.0% | |
| GGCGGAGCCACCTCTTAGTG+AGG | + | chr2_2:2364466-2364485 | None:intergenic | 65.0% | |
| ! | TGGCTCCGCCCCTGGTTCTT+AGG | - | chr2_2:2364476-2364495 | Msa0230320:intron | 65.0% |
| ! | GGCTCCGCCCCTGGTTCTTA+GGG | - | chr2_2:2364477-2364496 | Msa0230320:intron | 65.0% |
| ACTCCGCACCCCCTGACCCA+GGG | + | chr2_2:2363530-2363549 | None:intergenic | 70.0% | |
| AACTCCGCACCCCCTGACCC+AGG | + | chr2_2:2363531-2363550 | None:intergenic | 70.0% | |
| CTAAGAGGTGGCTCCGCCCC+TGG | - | chr2_2:2364468-2364487 | Msa0230320:intron | 70.0% | |
| CACCCCCTGACCCAGGGTCC+TGG | + | chr2_2:2363524-2363543 | None:intergenic | 75.0% | |
| GGACCCTGGGTCAGGGGGTG+CGG | - | chr2_2:2363524-2363543 | Msa0230320:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 2362391 | 2365426 | 2362391 | ID=Msa0230320;Name=Msa0230320 |
| chr2_2 | mRNA | 2362391 | 2365426 | 2362391 | ID=Msa0230320-mRNA-1;Parent=Msa0230320;Name=Msa0230320-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|300 |
| chr2_2 | exon | 2364915 | 2365426 | 2364915 | ID=Msa0230320-mRNA-1:exon:825;Parent=Msa0230320-mRNA-1 |
| chr2_2 | exon | 2362589 | 2362867 | 2362589 | ID=Msa0230320-mRNA-1:exon:824;Parent=Msa0230320-mRNA-1 |
| chr2_2 | exon | 2362391 | 2362502 | 2362391 | ID=Msa0230320-mRNA-1:exon:823;Parent=Msa0230320-mRNA-1 |
| chr2_2 | CDS | 2364915 | 2365426 | 2364915 | ID=Msa0230320-mRNA-1:cds;Parent=Msa0230320-mRNA-1 |
| chr2_2 | CDS | 2362589 | 2362867 | 2362589 | ID=Msa0230320-mRNA-1:cds;Parent=Msa0230320-mRNA-1 |
| chr2_2 | CDS | 2362391 | 2362502 | 2362391 | ID=Msa0230320-mRNA-1:cds;Parent=Msa0230320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
