AlfalfaGEDB | Msa0325350

M. sativa cultivar zhongmu-4 / Msa0325350

KEGG: -
GO: GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0325350	XP_003595480.2	25.779	353	205	12	1	323	801	1126	1.19e-16	95.9
Msa0325350	XP_003595480.2	93.191	470	17	2	1	457	1193	1660	0.0	890

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0325350	sp\|F4IIU4\|AIR9_ARATH	68.443	469	134	2	2	457	1241	1708	0.0	682
Msa0325350	sp\|F4IIU4\|AIR9_ARATH	25.291	344	219	11	1	323	846	1172	1.15e-20	99.0
Msa0325350	sp\|F4IIU4\|AIR9_ARATH	26.549	339	205	12	2	313	651	972	8.06e-15	80.9
Msa0325350	sp\|F4IIU4\|AIR9_ARATH	25.959	339	214	11	2	317	553	877	4.17e-11	69.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044440	Msa0325350	0.801863	7.366554e-49	-8.615850e-47
Msa0108630	Msa0325350	0.800111	1.680061e-48	-8.615850e-47
Msa0205210	Msa0325350	0.813264	2.794941e-51	-8.615850e-47
Msa0248100	Msa0325350	0.828175	1.040487e-54	-8.615850e-47
Msa0286580	Msa0325350	0.981044	1.219095e-151	-8.615850e-47
Msa0325350	Msa0337970	0.800342	1.507521e-48	-8.615850e-47
Msa0325350	Msa0401060	0.806184	9.305645e-50	-8.615850e-47
Msa0325350	Msa0431200	0.805700	1.176210e-49	-8.615850e-47
Msa0325350	Msa0500920	0.802871	4.566951e-49	-8.615850e-47
Msa0325350	Msa0520260	0.802941	4.416489e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0325350	MtrunA17_Chr2g0303451	93.191	470	17	2	1	457	1193	1660	0.0	890
Msa0325350	MtrunA17_Chr2g0303451	25.779	353	205	12	1	323	801	1126	1.09e-20	95.9
Msa0325350	MtrunA17_Chr2g0303451	24.340	341	222	10	2	320	509	835	3.15e-13	72.4
Msa0325350	MtrunA17_Chr2g0303451	30.168	179	107	8	164	333	484	653	4.59e-13	72.0
Msa0325350	MtrunA17_Chr2g0303451	24.332	337	214	11	1	313	995	1314	6.08e-12	68.2
Msa0325350	MtrunA17_Chr8g0360651	50.314	318	136	5	124	441	5	300	2.11e-97	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0325350	AT2G34680.2	68.443	469	134	2	2	457	1301	1768	0.0	682
Msa0325350	AT2G34680.2	25.291	344	219	11	1	323	906	1232	8.77e-22	99.4
Msa0325350	AT2G34680.2	26.549	339	205	12	2	313	711	1032	7.36e-16	81.3
Msa0325350	AT2G34680.2	25.959	339	214	11	2	317	613	937	4.05e-12	69.3
Msa0325350	AT2G34680.2	30.114	176	111	7	164	333	588	757	1.44e-11	67.4
Msa0325350	AT2G34680.1	68.443	469	134	2	2	457	1241	1708	0.0	682
Msa0325350	AT2G34680.1	25.291	344	219	11	1	323	846	1172	1.17e-21	99.0
Msa0325350	AT2G34680.1	26.549	339	205	12	2	313	651	972	8.19e-16	80.9
Msa0325350	AT2G34680.1	25.959	339	214	11	2	317	553	877	4.24e-12	69.3
Msa0325350	AT2G34680.1	30.000	180	114	7	164	337	528	701	1.82e-11	67.4

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Find 160 sgRNAs with CRISPR-Local

Find 694 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCAATACTTTCACTC+AGG	0.637745	2_4:+32476249	None:intergenic
AAACCCACTCTTAAAGATGT+TGG	0.509456	2_4:-32486264	Msa0325350:CDS
AAGCAATCACCTGGCAATAC+AGG	0.438528	2_4:+32482743	None:intergenic
AAGCTGGAGATCGAGGGAAG+GGG	0.621104	2_4:-32481501	Msa0325350:CDS
AAGGCAAAAGTAGAGTCCAG+TGG	0.673055	2_4:-32481428	Msa0325350:CDS
AAGTGGAATGAGACTCTTCA+TGG	0.450126	2_4:+32475875	None:intergenic
AATACACAAGCTGGAGATCG+AGG	0.566195	2_4:-32481508	Msa0325350:CDS
AATGAGACTCTTCATGGAGG+GGG	0.597072	2_4:+32475881	None:intergenic
AATGATACCAGGGGAAACTG+GGG	0.683818	2_4:+32486164	None:intergenic
AATGGTATATTATTGAGATG+CGG	0.647367	2_4:-32475996	Msa0325350:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAATCTGAATCAGTAACT+TGG	+	chr2_4:32476305-32476324	None:intergenic	30.0%
GTAGTTGAAACTTCAATAAG+TGG	+	chr2_4:32476602-32476621	None:intergenic	30.0%
AAGTTTCAACTACAAGTGTA+AGG	-	chr2_4:32476609-32476628	Msa0325350:intron	30.0%
TTATATATTAATCACCAGCG+AGG	+	chr2_4:32476753-32476772	None:intergenic	30.0%
GTTTAAAGGAAGTAAAAGAG+AGG	+	chr2_4:32477362-32477381	None:intergenic	30.0%
CACCATCTTAAAATTTGGAT+TGG	+	chr2_4:32477617-32477636	None:intergenic	30.0%
TCCAACACCATCTTAAAATT+TGG	+	chr2_4:32477622-32477641	None:intergenic	30.0%
CCCAATAACAAATCTATGAT+AGG	+	chr2_4:32477646-32477665	None:intergenic	30.0%
AGTAGGCACTATAATTAAAG+TGG	+	chr2_4:32477740-32477759	None:intergenic	30.0%
CATAAGAGCTTATAAAAGCT+TGG	-	chr2_4:32477762-32477781	Msa0325350:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	32475883	32486292	32475883	ID=Msa0325350;Name=Msa0325350
chr2_4	mRNA	32475883	32486292	32475883	ID=Msa0325350-mRNA-1;Parent=Msa0325350;Name=Msa0325350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0.9\|0.72\|1\|1\|1\|11\|474\|457
chr2_4	exon	32475883	32476533	32475883	ID=Msa0325350-mRNA-1:exon:10599;Parent=Msa0325350-mRNA-1
chr2_4	exon	32476641	32476772	32476641	ID=Msa0325350-mRNA-1:exon:10598;Parent=Msa0325350-mRNA-1
chr2_4	exon	32476885	32476917	32476885	ID=Msa0325350-mRNA-1:exon:10597;Parent=Msa0325350-mRNA-1
chr2_4	exon	32477365	32477423	32477365	ID=Msa0325350-mRNA-1:exon:10596;Parent=Msa0325350-mRNA-1
chr2_4	exon	32480395	32480526	32480395	ID=Msa0325350-mRNA-1:exon:10595;Parent=Msa0325350-mRNA-1
chr2_4	exon	32481385	32481540	32481385	ID=Msa0325350-mRNA-1:exon:10594;Parent=Msa0325350-mRNA-1
chr2_4	exon	32482753	32482934	32482753	ID=Msa0325350-mRNA-1:exon:10593;Parent=Msa0325350-mRNA-1
chr2_4	exon	32483710	32483848	32483710	ID=Msa0325350-mRNA-1:exon:10592;Parent=Msa0325350-mRNA-1
chr2_4	exon	32483972	32484019	32483972	ID=Msa0325350-mRNA-1:exon:10591;Parent=Msa0325350-mRNA-1
chr2_4	exon	32485845	32486039	32485845	ID=Msa0325350-mRNA-1:exon:10590;Parent=Msa0325350-mRNA-1
chr2_4	exon	32486172	32486292	32486172	ID=Msa0325350-mRNA-1:exon:10589;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32486172	32486292	32486172	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32485845	32486039	32485845	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32483972	32484019	32483972	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32483710	32483848	32483710	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32482753	32482934	32482753	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32481385	32481540	32481385	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32480395	32480526	32480395	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32477365	32477423	32477365	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32476885	32476917	32476885	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32476641	32476772	32476641	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	CDS	32476357	32476533	32476357	ID=Msa0325350-mRNA-1:cds;Parent=Msa0325350-mRNA-1
chr2_4	three_prime_UTR	32475883	32476356	32475883	ID=Msa0325350-mRNA-1:three_prime_utr;Parent=Msa0325350-mRNA-1

Gene Sequence

>Msa0325350

ACGTATAAACCCACTCTTAAAGATGTTGGATCTTTTTTGGCCTTTTATTGGGTACCAACTCGTGCGGATAACACTTGTGGAGAGCCATTGGTTGCAATTTGCAGTACCCCAGTTTCCCCTGGACCTCCAGCAGTTGCTAATGTACATGTGAAAGAGTTGTCTTTGGGAGTTTATTCCGGTGAAGGTGAATACTTTGGTGGATATGAGGGAGAAAGCATTCTTAGCTGGCATAGAGAAAATAGTGAGGGGAGTGTTGAACTGATCAATGGTGCAAATTCTAGAACCTACCAAGTTACTGATTCAGATTACACTTGTCTTGTGGGCGAACTCAAGTTATCTGATCCAACTGACATTCTTTTCCCAGAGCTTCCATATGCGGAGATGCTTGCCCTGACAGGAAAGGCAGTTGAAGGTGACATACTTACAGCTGTTGAAGTGATTCCAAATAGTGAGATGCAGAAACATGTTTGGAGCAAGTACAAGAAAGATGTAAAATACCAATGGTTTTGTTCATCAGAAGAGGGAGACAGTTCTTCATATGAGCCATTACCAAATCAAAATTCTTGCTCTTATAGGGTGCAGTTACAGGATATTGGTCGTTGTTTAAAATGTGAATGTGTTGTAACTGATGTGTTCGGAAGATCGAGCGAGGTGGTATACATTGAGACAACACCTGTATTGCCAGGGATTCCTAGAATACACAAGCTGGAGATCGAGGGAAGGGGATTCCATACCAATCTCTATGCTGTTCGTGGCATTTATAGTGGTGGGAAGGAAGGCAAAAGTAGAGTCCAGTGGCTTAGATCAATGGTTGGAAGTCCTGATCTGATCTCTATACCGGGAGAAACAGGCAGAATGTATGAAGCAAACGTTGATGATGTTGGCTATAGGTTGGTGGCCATCTACACTCCTTTAAGAGAGGATGGTGTAGAGGGCCAATCAGTGTCTGTATCCACAGATCCAATTGCAGTTGAGCCTGACGTTCTTAAAGAAGTGAAGCAGAACCTTGATCTGGGATCAGTGAAATTTGAGGTATTGTGTGACAAAGACCAAACCTCAAAAAAGATTTCATCAGTGGGCACGTACGAGAGACGAATCCTTGAGATTAACAAGAAAAGGGTTAAGGTGGTGAAGCCTGCCACCAAAACTTCGTTTCCAACTACAGAAATTCGTGGTAGTTATGCCCCTCCGTTTCATGTGGAGCTTTTCAGAAATGATCAACACCGACTAAAAATAGTAGTGGACAGTGAGAATGAAGCAGACTTGATGGTGCAGTCCAGACACATTCGGGATGTTATCGTTCTTGTTATTAGAGGACTTGCTCAACGATTCAACAGTACCTCCCTCAATTCCCTTCTCAAGATAGAGACATGA

Protein sequence

>Msa0325350

TYKPTLKDVGSFLAFYWVPTRADNTCGEPLVAICSTPVSPGPPAVANVHVKELSLGVYSGEGEYFGGYEGESILSWHRENSEGSVELINGANSRTYQVTDSDYTCLVGELKLSDPTDILFPELPYAEMLALTGKAVEGDILTAVEVIPNSEMQKHVWSKYKKDVKYQWFCSSEEGDSSSYEPLPNQNSCSYRVQLQDIGRCLKCECVVTDVFGRSSEVVYIETTPVLPGIPRIHKLEIEGRGFHTNLYAVRGIYSGGKEGKSRVQWLRSMVGSPDLISIPGETGRMYEANVDDVGYRLVAIYTPLREDGVEGQSVSVSTDPIAVEPDVLKEVKQNLDLGSVKFEVLCDKDQTSKKISSVGTYERRILEINKKRVKVVKPATKTSFPTTEIRGSYAPPFHVELFRNDQHRLKIVVDSENEADLMVQSRHIRDVIVLVIRGLAQRFNSTSLNSLLKIET*