AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166290 MtrunA17_Chr7g0268781 99.046 629 6 0 1 629 1 629 0.0 1284
Msa1166290 MtrunA17_Chr1g0195911 76.899 632 132 6 1 629 1 621 0.0 998
Msa1166290 MtrunA17_Chr4g0010091 47.902 572 275 9 30 594 28 583 3.19e-179 521
Msa1166290 MtrunA17_Chr7g0245201 44.034 595 289 11 34 615 59 622 9.83e-163 480
Msa1166290 MtrunA17_Chr5g0401451 40.156 640 317 14 22 629 25 630 2.70e-151 451
Msa1166290 MtrunA17_Chr4g0053841 38.792 629 327 17 25 629 1 595 1.18e-136 412
Msa1166290 MtrunA17_Chr2g0303541 37.086 604 333 11 26 601 15 599 5.21e-123 378
Msa1166290 MtrunA17_Chr3g0108331 35.057 619 319 15 20 617 7 563 6.98e-117 360
Msa1166290 MtrunA17_Chr2g0279481 31.373 663 384 12 13 619 20 667 9.30e-108 340
Msa1166290 MtrunA17_Chr8g0374011 35.392 599 312 12 38 575 22 606 3.60e-107 337
Msa1166290 MtrunA17_Chr2g0320691 35.034 588 334 12 34 590 21 591 5.51e-107 336
Msa1166290 MtrunA17_Chr5g0432861 33.773 607 305 11 20 594 8 549 9.00e-107 334
Msa1166290 MtrunA17_Chr4g0050021 33.120 625 347 15 31 602 38 644 3.10e-106 335
Msa1166290 MtrunA17_Chr8g0382231 33.884 605 310 13 36 604 52 602 1.38e-102 325
Msa1166290 MtrunA17_Chr2g0285511 34.570 593 340 14 20 590 9 575 3.43e-97 310
Msa1166290 MtrunA17_Chr1g0181181 35.294 544 301 12 34 556 24 537 8.36e-96 305
Msa1166290 MtrunA17_Chr1g0199631 33.755 554 328 12 54 590 8 539 9.63e-92 295
Msa1166290 MtrunA17_Chr1g0207461 34.451 537 322 11 34 556 26 546 5.51e-86 281
Msa1166290 MtrunA17_Chr5g0401341 36.157 484 265 11 34 498 25 483 1.05e-85 280
Msa1166290 MtrunA17_Chr5g0412591 36.673 529 250 14 18 506 12 495 8.32e-81 266
Msa1166290 MtrunA17_Chr4g0076521 33.155 561 309 12 27 566 17 532 1.02e-80 266
Msa1166290 MtrunA17_Chr1g0150191 34.105 475 290 9 34 497 25 487 2.45e-80 266
Msa1166290 MtrunA17_Chr8g0367891 33.276 583 331 16 39 587 29 587 2.35e-77 257
Msa1166290 MtrunA17_Chr2g0290741 31.959 485 277 10 27 496 17 463 3.38e-66 227
Msa1166290 MtrunA17_Chr1g0191711 27.406 478 286 7 37 503 59 486 9.41e-65 222
Msa1166290 MtrunA17_Chr4g0003891 33.099 426 231 11 204 616 33 417 7.83e-62 212
Msa1166290 MtrunA17_Chr2g0332281 33.105 438 232 10 213 627 24 423 1.17e-58 202
Msa1166290 MtrunA17_Chr4g0023801 25.397 567 368 13 45 593 14 543 3.05e-42 160
Msa1166290 MtrunA17_Chr4g0037661 26.337 505 289 14 37 499 4 467 5.83e-41 157
Msa1166290 MtrunA17_Chr1g0206621 50.365 137 66 1 43 177 75 211 1.22e-40 148
Msa1166290 MtrunA17_Chr1g0163311 27.682 289 148 6 296 575 286 522 8.22e-27 114
Msa1166290 MtrunA17_Chr2g0280541 25.170 441 258 10 102 518 1 393 3.09e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166290 AT1G03010.1 68.837 645 174 9 1 629 1 634 0.0 862
Msa1166290 AT1G03010.2 69.055 614 163 9 32 629 5 607 0.0 816
Msa1166290 AT1G03010.3 69.055 614 163 9 32 629 31 633 0.0 815
Msa1166290 AT2G47860.1 61.231 650 216 12 1 629 1 635 0.0 743
Msa1166290 AT2G47860.3 59.138 673 216 13 1 629 1 658 0.0 730
Msa1166290 AT2G47860.5 61.205 531 170 11 121 629 1 517 0.0 583
Msa1166290 AT2G47860.2 61.205 531 170 11 121 629 1 517 0.0 583
Msa1166290 AT2G47860.4 61.269 457 155 7 1 448 1 444 0.0 531
Msa1166290 AT2G47860.6 58.333 480 155 8 1 448 1 467 4.25e-180 518
Msa1166290 AT5G48800.1 46.540 578 278 8 23 594 28 580 1.90e-174 509
Msa1166290 AT5G67385.1 40.129 618 320 13 22 617 10 599 5.14e-141 424
Msa1166290 AT3G08570.1 43.194 551 284 11 34 575 32 562 2.85e-140 422
Msa1166290 AT3G08660.1 40.842 546 276 11 34 575 32 534 1.11e-133 404
Msa1166290 AT5G67385.4 39.347 582 304 12 57 617 1 554 2.78e-126 384
Msa1166290 AT5G67385.5 39.347 582 304 12 57 617 1 554 2.78e-126 384
Msa1166290 AT5G67385.2 39.347 582 304 12 57 617 1 554 2.78e-126 384
Msa1166290 AT5G67385.3 39.347 582 304 12 57 617 1 554 2.78e-126 384
Msa1166290 AT3G08660.3 40.232 517 262 11 63 575 1 474 3.90e-121 370
Msa1166290 AT1G30440.1 35.434 587 327 12 26 575 15 586 1.41e-111 349
Msa1166290 AT5G03250.1 35.593 590 324 13 26 590 15 573 1.82e-106 334
Msa1166290 AT2G30520.1 33.445 595 326 13 22 594 15 561 1.63e-105 332
Msa1166290 AT5G13600.1 36.538 572 297 16 39 583 29 561 2.87e-101 320
Msa1166290 AT3G49970.1 33.956 589 286 16 48 617 6 510 3.26e-98 310
Msa1166290 AT3G49970.2 33.956 589 286 16 48 617 6 510 3.26e-98 310
Msa1166290 AT2G30520.2 33.036 560 306 12 56 594 2 513 5.85e-95 302
Msa1166290 AT2G30520.3 33.036 560 306 12 56 594 2 513 5.85e-95 302
Msa1166290 AT3G44820.1 31.940 598 333 11 26 575 12 583 5.35e-94 303
Msa1166290 AT5G66560.1 32.039 618 322 9 38 575 21 620 4.31e-92 298
Msa1166290 AT5G66560.3 31.908 608 316 9 48 575 2 591 3.82e-90 293
Msa1166290 AT2G14820.2 34.375 544 320 13 34 558 25 550 9.19e-90 291
Msa1166290 AT2G14820.1 34.375 544 320 13 34 558 25 550 9.19e-90 291
Msa1166290 AT3G50840.1 33.333 573 310 10 22 575 2 521 2.68e-88 286
Msa1166290 AT5G66560.4 33.582 536 302 7 76 575 64 581 3.48e-88 287
Msa1166290 AT3G08660.2 37.915 422 224 9 34 451 32 419 1.82e-87 279
Msa1166290 AT5G10250.2 32.184 609 311 16 31 598 44 591 2.56e-87 285
Msa1166290 AT5G10250.1 31.886 599 311 15 31 598 44 576 3.29e-84 276
Msa1166290 AT5G67440.3 36.059 477 268 10 34 498 25 476 3.74e-84 275
Msa1166290 AT5G67440.1 36.059 477 268 10 34 498 25 476 3.74e-84 275
Msa1166290 AT1G67900.5 33.386 629 356 15 18 600 12 623 1.02e-83 275
Msa1166290 AT1G67900.1 33.386 629 356 15 18 600 12 623 1.02e-83 275
Msa1166290 AT1G67900.3 33.386 629 356 15 18 600 12 623 1.02e-83 275
Msa1166290 AT1G67900.6 33.386 629 356 15 18 600 12 623 1.02e-83 275
Msa1166290 AT1G67900.2 33.386 629 356 15 18 600 12 623 1.02e-83 275
Msa1166290 AT1G67900.4 33.386 629 356 15 18 600 12 623 1.02e-83 275
Msa1166290 AT4G31820.1 35.404 483 265 11 29 498 20 468 4.14e-82 270
Msa1166290 AT3G50840.2 33.086 538 288 10 57 575 1 485 7.47e-80 263
Msa1166290 AT3G50840.3 33.086 538 288 10 57 575 1 485 7.47e-80 263
Msa1166290 AT5G67440.2 36.304 460 256 10 51 498 5 439 9.98e-80 262
Msa1166290 AT4G37590.1 32.165 485 271 11 34 501 25 468 1.83e-77 258
Msa1166290 AT5G03250.2 34.350 492 270 11 121 590 1 461 4.03e-77 254
Msa1166290 AT3G26490.1 35.441 522 270 14 18 498 12 507 5.96e-76 254
Msa1166290 AT3G26490.3 35.441 522 270 14 18 498 12 507 5.96e-76 254
Msa1166290 AT3G26490.4 35.441 522 270 14 18 498 12 507 5.96e-76 254
Msa1166290 AT5G47800.3 32.700 474 287 9 33 496 23 474 1.60e-74 249
Msa1166290 AT5G47800.1 32.700 474 287 9 33 496 23 474 1.60e-74 249
Msa1166290 AT5G47800.4 32.700 474 287 9 33 496 23 474 1.60e-74 249
Msa1166290 AT2G23050.1 32.454 493 268 12 24 505 19 457 2.05e-74 246
Msa1166290 AT5G47800.2 32.700 474 287 9 33 496 136 587 3.24e-73 248
Msa1166290 AT4G31820.2 34.076 449 249 11 63 498 1 415 8.79e-68 230
Msa1166290 AT5G66560.2 31.590 478 242 8 38 448 21 480 9.10e-64 218
Msa1166290 AT3G26490.2 33.617 470 259 13 18 453 12 462 4.78e-58 203
Msa1166290 AT1G52770.1 34.430 395 209 7 197 575 17 377 6.78e-58 202
Msa1166290 AT5G64330.1 34.384 349 202 8 269 596 371 713 7.65e-52 191
Msa1166290 AT5G64330.1 34.677 248 135 3 34 256 50 295 5.86e-41 159
Msa1166290 AT2G23050.2 32.564 390 209 10 121 505 1 341 1.19e-50 179
Msa1166290 AT5G64330.3 41.224 245 129 4 269 503 312 551 4.63e-49 181
Msa1166290 AT5G64330.3 34.061 229 124 3 53 256 10 236 5.89e-35 140
Msa1166290 AT3G15570.1 36.913 298 142 5 222 499 38 309 5.38e-49 177
Msa1166290 AT5G64330.2 41.224 245 129 4 269 503 371 610 6.73e-49 181
Msa1166290 AT5G64330.2 34.677 248 135 3 34 256 50 295 2.49e-41 159
Msa1166290 AT3G19850.1 25.202 496 303 9 36 497 3 464 8.44e-49 179
Msa1166290 AT3G22104.1 29.032 465 265 11 36 483 4 420 3.35e-45 168
Msa1166290 AT1G50280.1 25.000 488 309 10 32 492 3 460 1.66e-44 167
Msa1166290 AT5G48130.1 27.096 513 292 14 42 534 45 495 1.97e-44 168
Msa1166290 AT1G50280.2 24.943 441 282 8 74 492 14 427 1.04e-42 161
Msa1166290 AT5G17580.2 27.368 475 302 9 38 503 22 462 1.74e-39 153
Msa1166290 AT5G17580.1 27.789 475 300 10 38 503 7 447 2.77e-39 152
Msa1166290 AT3G03510.1 28.673 422 226 12 90 501 8 364 1.76e-38 148
Msa1166290 AT3G22104.4 28.133 391 219 8 107 483 3 345 1.43e-34 136
Msa1166290 AT3G22104.2 28.133 391 219 8 107 483 3 345 1.43e-34 136
Msa1166290 AT3G22104.3 28.133 391 219 8 107 483 3 345 1.43e-34 136

Find 121 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGTTTCCTCTTGTTTCT+AGG 0.091654 7_4:+58404510 Msa1166290:intron
CACCAATCTAAGGGTGTTTC+TGG 0.142169 7_4:-58404971 None:intergenic
GAGAAAATTGTCAAGTAATT+TGG 0.180360 7_4:-58405551 None:intergenic
TTAAATTAGATTATATATTT+AGG 0.198352 7_4:+58402693 Msa1166290:five_prime_UTR
GAATTGAAGCCTAGTGTTTC+AGG 0.216646 7_4:+58402913 Msa1166290:CDS
GTCTCGTCAGTGGTAGAAAA+TGG 0.229342 7_4:+58402873 Msa1166290:exon
TTTCTAGGAGTGGAAGATTT+AGG 0.247375 7_4:+58404525 Msa1166290:CDS
AACTTTCCATTGACAGAAAC+TGG 0.249645 7_4:+58402790 Msa1166290:five_prime_UTR
TTCTTTACTACGAACAAATA+AGG 0.259310 7_4:+58406180 Msa1166290:CDS
AGAATTCTCAGAAAAGAATT+TGG 0.264671 7_4:+58404724 Msa1166290:CDS
AGAGTTGATCAGCAAAATTT+TGG 0.272364 7_4:+58405072 Msa1166290:CDS
AACTTCTTGTAGAAGTGATT+TGG 0.280903 7_4:+58405282 Msa1166290:CDS
ATCTTGTTTGGTGGTATTCA+TGG 0.287931 7_4:+58406236 Msa1166290:CDS
TTCTCCATGACACTATCTTT+TGG 0.314762 7_4:+58402743 Msa1166290:five_prime_UTR
AAGATATCAACCTTGTTAAT+AGG 0.326340 7_4:+58404846 Msa1166290:CDS
ATTTACCTTGTGAAGTGAAT+AGG 0.350440 7_4:-58403989 None:intergenic
AGAGTTTCCCCACCAATCTA+AGG 0.353136 7_4:-58404981 None:intergenic
GAGAATGAGGTTGAATGATT+TGG 0.354022 7_4:+58406373 Msa1166290:CDS
AGTATTCGTGGCAGTGGAAC+TGG 0.358592 7_4:+58406509 Msa1166290:CDS
AGCTGTTGACATCTTCCTTA+AGG 0.360096 7_4:+58405675 Msa1166290:CDS
GCTTCTCCAGTTTCTGTCAA+TGG 0.366166 7_4:-58402796 None:intergenic
TTAAGAATTGAGCTTTGCTT+TGG 0.368579 7_4:-58405523 None:intergenic
TTCTAAAACATTATCAATGA+TGG 0.372684 7_4:+58404946 Msa1166290:CDS
TGTATAATGTTCGATGTGTT+TGG 0.373596 7_4:-58404785 None:intergenic
TATATAACTCAAAATCTATC+AGG 0.379497 7_4:-58406693 None:intergenic
CAAAGATCAGGGAGTGGTAT+AGG 0.379986 7_4:+58406269 Msa1166290:CDS
GGACACAATCAAATCTTGTT+TGG 0.395537 7_4:+58406224 Msa1166290:CDS
AAACATGAAAGAAATGCTAT+TGG 0.398126 7_4:-58405229 None:intergenic
TTTCTTCGAACGAGTTATAT+CGG 0.401205 7_4:+58405024 Msa1166290:CDS
ATAGGTTCATCCGAACATTA+AGG 0.402802 7_4:+58406046 Msa1166290:intron
GAAAGGCTACCAGTTCAAAT+AGG 0.406258 7_4:+58406149 Msa1166290:CDS
TGCAAAGAGCAACTAACTTC+TGG 0.410485 7_4:+58404896 Msa1166290:CDS
GGTCAATTTCCTCAAAGATC+AGG 0.415797 7_4:+58406257 Msa1166290:CDS
AAAGCAAAGCTCAATTCTTA+AGG 0.417656 7_4:+58405525 Msa1166290:CDS
GAGCTTTGCTTTGGAGATCC+AGG 0.425100 7_4:-58405514 None:intergenic
AGGTTGATATCTTCTGATAA+AGG 0.430627 7_4:-58404836 None:intergenic
AGCACTTGCAGAACTACTTC+CGG 0.434035 7_4:+58405618 Msa1166290:CDS
ATACCACTCCCTGATCTTTG+AGG 0.435450 7_4:-58406266 None:intergenic
TATGCACATAATTCTCTTCA+AGG 0.435685 7_4:+58405100 Msa1166290:CDS
TCACTGGAGACATCAGATAT+TGG 0.444897 7_4:-58403940 None:intergenic
GCTTACTACCAACTCAATCT+AGG 0.447056 7_4:+58405194 Msa1166290:CDS
GTATAATGTTCGATGTGTTT+GGG 0.449390 7_4:-58404784 None:intergenic
ACTTGTACACCTATTTGAAC+TGG 0.460924 7_4:-58406158 None:intergenic
CGCTCCGAGTCCTTAATGTT+CGG 0.462622 7_4:-58406056 None:intergenic
TTCCGTATTAACAGTATTCG+TGG 0.465111 7_4:+58406497 Msa1166290:CDS
AGGCTTCGAAATGCGATGAA+TGG 0.467453 7_4:+58406200 Msa1166290:CDS
TTTCCTCTTGTTTCTAGGAG+TGG 0.473410 7_4:+58404515 Msa1166290:CDS
TCAGGGAGTGGTATAGGAAG+TGG 0.474984 7_4:+58406275 Msa1166290:CDS
AGCCTAGTGTTTCAGGAAGA+AGG 0.476944 7_4:+58402920 Msa1166290:CDS
GGAAACCGGGACCGTGGTTG+TGG 0.476979 7_4:-58406542 None:intergenic
TGCCACGAATACTGTTAATA+CGG 0.478280 7_4:-58406499 None:intergenic
CTTGTAACGCGAGCATGATC+CGG 0.480182 7_4:-58405637 None:intergenic
GATCGGTTTACAACTCGATC+AGG 0.481839 7_4:+58405312 Msa1166290:CDS
GTAAGTCTTCCGACCGTGCC+AGG 0.485055 7_4:+58404587 Msa1166290:CDS
TACTTGGATGGTAAGATCAC+TGG 0.486316 7_4:-58403956 None:intergenic
GGGAGTTTGATCTAGCGAAA+AGG 0.489191 7_4:+58406719 Msa1166290:three_prime_UTR
GGAGTTTGATCTAGCGAAAA+GGG 0.497186 7_4:+58406720 Msa1166290:three_prime_UTR
TCTTCTGCAATTCAATGTCA+AGG 0.497562 7_4:-58405141 None:intergenic
AAGAGCTGAATCATATCTAA+AGG 0.501938 7_4:+58404751 Msa1166290:CDS
AATAGGTTGATGCTCCTACT+TGG 0.504109 7_4:-58403972 None:intergenic
ATATATAATCTAATTTAAGA+TGG 0.509153 7_4:-58402688 None:intergenic
TCTCGTCAGTGGTAGAAAAT+GGG 0.511005 7_4:+58402874 Msa1166290:exon
AACCAGAAACACCCTTAGAT+TGG 0.511015 7_4:+58404969 Msa1166290:CDS
CTTCTGCAATTCAATGTCAA+GGG 0.515528 7_4:-58405140 None:intergenic
AAACACATCGAACATTATAC+AGG 0.516060 7_4:+58404787 Msa1166290:CDS
AAAATGGGAGTTGTAACTCT+TGG 0.524005 7_4:+58402889 Msa1166290:exon
CACAATCAAATCTTGTTTGG+TGG 0.524281 7_4:+58406227 Msa1166290:CDS
ATAGCTGCAAAATTCTGCTA+TGG 0.525366 7_4:+58404629 Msa1166290:CDS
GAGTATGAATTTGACAGTCC+TGG 0.526590 7_4:+58405496 Msa1166290:CDS
GCATGTCTTATGCTTGAACT+TGG 0.528359 7_4:-58402952 None:intergenic
TGAATCATATCTAAAGGAAA+CGG 0.538877 7_4:+58404757 Msa1166290:CDS
GCATAAGACATGCCACTGAA+TGG 0.541068 7_4:+58402962 Msa1166290:CDS
ATTAACAGTATTCGTGGCAG+TGG 0.547672 7_4:+58406503 Msa1166290:CDS
CATTGATTAGCCTATTAACA+AGG 0.548783 7_4:-58404856 None:intergenic
TGCATCTACACCACCTGGCA+CGG 0.550474 7_4:-58404600 None:intergenic
TATAATCTAATTTAAGATGG+AGG 0.552605 7_4:-58402685 None:intergenic
TCATCCGAACATTAAGGACT+CGG 0.556784 7_4:+58406052 Msa1166290:CDS
GTCAATTTCCTCAAAGATCA+GGG 0.559074 7_4:+58406258 Msa1166290:CDS
AGAAACACCCTTAGATTGGT+GGG 0.561564 7_4:+58404973 Msa1166290:CDS
GCCATGCCGCACAAAATGAA+AGG 0.570379 7_4:+58406132 Msa1166290:CDS
ACCGATGCATAGTTATCTCT+AGG 0.575158 7_4:-58406308 None:intergenic
GATTTGAAGAATTTGCGTGC+AGG 0.575709 7_4:-58406440 None:intergenic
TTGAATTGCAGAAGAAACAA+AGG 0.576448 7_4:+58405149 Msa1166290:CDS
CTAGTCCACAACCACGGTCC+CGG 0.580906 7_4:+58406537 Msa1166290:CDS
TCCTAGAGATAACTATGCAT+CGG 0.582662 7_4:+58406307 Msa1166290:CDS
AAGTAACAAGAATGAGAATG+AGG 0.586252 7_4:+58406360 Msa1166290:CDS
CAGAAACACCCTTAGATTGG+TGG 0.586270 7_4:+58404972 Msa1166290:CDS
GGTTGATGCTCCTACTTGGA+TGG 0.586634 7_4:-58403968 None:intergenic
AGATGGAGGAAAATAAATGC+AGG 0.587438 7_4:-58402671 None:intergenic
CTTGTAGAAGTGATTTGGAG+AGG 0.587525 7_4:+58405287 Msa1166290:CDS
TGAATTGCAGAAGAAACAAA+GGG 0.588131 7_4:+58405150 Msa1166290:CDS
GCACTCGAAGGTGAATTCGT+TGG 0.590719 7_4:-58405358 None:intergenic
AGTGATTTGGAGAGGCGGAT+CGG 0.592594 7_4:+58405295 Msa1166290:CDS
TCTACACCACCTGGCACGGT+CGG 0.595705 7_4:-58404596 None:intergenic
CTTCCACTCCTAGAAACAAG+AGG 0.596628 7_4:-58404518 None:intergenic
CATGCTCGCGTTACAAGCGA+TGG 0.602341 7_4:+58405643 Msa1166290:CDS
GAGTTTCCCCACCAATCTAA+GGG 0.605139 7_4:-58404980 None:intergenic
ATATCGGTTATGAAATCGAA+GGG 0.606291 7_4:+58405040 Msa1166290:CDS
AGTGATCTTACCATCCAAGT+AGG 0.606850 7_4:+58403958 Msa1166290:CDS
CTTCGAAATGCGATGAATGG+AGG 0.608119 7_4:+58406203 Msa1166290:CDS
GTCCTTCTTCCTGAAACACT+AGG 0.612878 7_4:-58402922 None:intergenic
ATGCACATAATTCTCTTCAA+GGG 0.619987 7_4:+58405101 Msa1166290:CDS
TGAAAAGGAAACCGGGACCG+TGG 0.620189 7_4:-58406548 None:intergenic
TCAAATGCATCTACACCACC+TGG 0.627222 7_4:-58404605 None:intergenic
TATATCGGTTATGAAATCGA+AGG 0.631995 7_4:+58405039 Msa1166290:CDS
ATCAACCTATTCACTTCACA+AGG 0.635818 7_4:+58403984 Msa1166290:CDS
TAGCATAGCAATATTCGAGA+GGG 0.638972 7_4:-58404669 None:intergenic
TTTCCTCAAAGATCAGGGAG+TGG 0.639154 7_4:+58406263 Msa1166290:CDS
TGAACCAAAAGATAGTGTCA+TGG 0.640837 7_4:-58402747 None:intergenic
AAAATTATAATACCATTCAG+TGG 0.645788 7_4:-58402974 None:intergenic
GAAACACCCTTAGATTGGTG+GGG 0.662827 7_4:+58404974 Msa1166290:CDS
GTAGAAGTGATTTGGAGAGG+CGG 0.668323 7_4:+58405290 Msa1166290:CDS
ATAGCATAGCAATATTCGAG+AGG 0.677800 7_4:-58404670 None:intergenic
AAAGGTGGTGAATGTGTGTG+TGG 0.678039 7_4:-58402635 None:intergenic
GAAACACATAGTCTCGTCAG+TGG 0.686047 7_4:+58402863 Msa1166290:five_prime_UTR
AGTCTTCCGACCGTGCCAGG+TGG 0.688935 7_4:+58404590 Msa1166290:CDS
TTCGTGGCAGTGGAACTGGA+AGG 0.695731 7_4:+58406513 Msa1166290:CDS
ATTCTGCTATGGAATCAATG+TGG 0.703925 7_4:+58404640 Msa1166290:CDS
ACTATAGTCATGAAACTGAG+TGG 0.715336 7_4:-58406583 None:intergenic
ATTGTGTTGTGAGCACTCGA+AGG 0.726239 7_4:-58405370 None:intergenic
GAAGGTCTAGTCCACAACCA+CGG 0.728361 7_4:+58406531 Msa1166290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATCTAATTTAAGA+TGG - chr7_4:58402691-58402710 None:intergenic 10.0%
!!! TACTTTTTTCTTTTTTTTGA+AGG + chr7_4:58403002-58403021 Msa1166290:intron 15.0%
!! AATAGTATGATAATAATTGA+TGG - chr7_4:58403511-58403530 None:intergenic 15.0%
!!! TCAAAATAATATTTTAGGAA+TGG - chr7_4:58403695-58403714 None:intergenic 15.0%
!!! CTGTATCAAAATAATATTTT+AGG - chr7_4:58403700-58403719 None:intergenic 15.0%
!!! TTTTTATGTAATGCAATAAA+TGG - chr7_4:58403781-58403800 None:intergenic 15.0%
!! ATAATTATAACATATCAGAA+TGG - chr7_4:58404027-58404046 None:intergenic 15.0%
!! TTATAATTATACATTCAACA+TGG + chr7_4:58404037-58404056 Msa1166290:intron 15.0%
!!! TTTAAAACCTTTTATACTAA+CGG - chr7_4:58404186-58404205 None:intergenic 15.0%
!!! ATATTATTTTCTAACGTTAT+GGG - chr7_4:58405829-58405848 None:intergenic 15.0%
!!! AATATTATTTTCTAACGTTA+TGG - chr7_4:58405830-58405849 None:intergenic 15.0%
!!! TAGATTTTGAGTTATATAAA+TGG + chr7_4:58406698-58406717 Msa1166290:three_prime_UTR 15.0%
!!! AGATTTTGAGTTATATAAAT+GGG + chr7_4:58406699-58406718 Msa1166290:three_prime_UTR 15.0%
!!! TATAATCTAATTTAAGATGG+AGG - chr7_4:58402688-58402707 None:intergenic 20.0%
!! AAAATTATAATACCATTCAG+TGG - chr7_4:58402977-58402996 None:intergenic 20.0%
!!! TCTCTGAAAATTTCAATTTT+TGG + chr7_4:58403833-58403852 Msa1166290:intron 20.0%
!! TGATAACATACTATATAAGA+TGG - chr7_4:58404353-58404372 None:intergenic 20.0%
!!! ATCATTGATAATGTTTTAGA+AGG - chr7_4:58404947-58404966 None:intergenic 20.0%
!!! TTCTAAAACATTATCAATGA+TGG + chr7_4:58404946-58404965 Msa1166290:CDS 20.0%
!!! ATGATATAGATTCAATTTTG+AGG + chr7_4:58405395-58405414 Msa1166290:CDS 20.0%
!!! TTAATAGTGTTTTCAATAGA+AGG - chr7_4:58405721-58405740 None:intergenic 20.0%
!! TAATTAATGACTGAAATTGT+TGG + chr7_4:58406011-58406030 Msa1166290:intron 20.0%
!!! TGTTGGTTTATTTATCATAT+AGG + chr7_4:58406028-58406047 Msa1166290:intron 20.0%
!! TATATAACTCAAAATCTATC+AGG - chr7_4:58406696-58406715 None:intergenic 20.0%
! AATTTCATGAAATCTTGAAG+TGG - chr7_4:58403125-58403144 None:intergenic 25.0%
! ATTAGTTCATCAACCATAAT+AGG - chr7_4:58403254-58403273 None:intergenic 25.0%
!! ATCTTAATTTTCCAATCTCA+AGG - chr7_4:58403380-58403399 None:intergenic 25.0%
!!! CATACTATTGTTTTAGCTTT+TGG + chr7_4:58403522-58403541 Msa1166290:intron 25.0%
! TTGCATTTCCAAATTCATTT+AGG - chr7_4:58403548-58403567 None:intergenic 25.0%
! ACTCCAATTATTTGCATTAA+TGG + chr7_4:58403649-58403668 Msa1166290:intron 25.0%
! CTCCAATTATTTGCATTAAT+GGG + chr7_4:58403650-58403669 Msa1166290:intron 25.0%
! AACCCATTAATGCAAATAAT+TGG - chr7_4:58403655-58403674 None:intergenic 25.0%
!! AAACTTAAGTAACCATTTTG+AGG + chr7_4:58403726-58403745 Msa1166290:intron 25.0%
! AGAATTCTCAGAAAAGAATT+TGG + chr7_4:58404724-58404743 Msa1166290:CDS 25.0%
! TGAATCATATCTAAAGGAAA+CGG + chr7_4:58404757-58404776 Msa1166290:CDS 25.0%
! AAGATATCAACCTTGTTAAT+AGG + chr7_4:58404846-58404865 Msa1166290:CDS 25.0%
! AAACATGAAAGAAATGCTAT+TGG - chr7_4:58405232-58405251 None:intergenic 25.0%
!!! CTTTTCTACTTTTCTGAATT+TGG + chr7_4:58405420-58405439 Msa1166290:CDS 25.0%
! GAGAAAATTGTCAAGTAATT+TGG - chr7_4:58405554-58405573 None:intergenic 25.0%
!!! TTGCTTTGATTTGTAAAGAA+AGG + chr7_4:58405981-58406000 Msa1166290:intron 25.0%
! TTCTTTACTACGAACAAATA+AGG + chr7_4:58406180-58406199 Msa1166290:CDS 25.0%
! CATGTTTCTGAATAACTTCT+AGG - chr7_4:58403070-58403089 None:intergenic 30.0%
ATCATGTCATTGTTTGGTAA+AGG - chr7_4:58403426-58403445 None:intergenic 30.0%
TTTCATATAGCTAACAGATG+AGG - chr7_4:58403471-58403490 None:intergenic 30.0%
CCAAAAAAATTGTCCATTGT+CGG - chr7_4:58403577-58403596 None:intergenic 30.0%
! GAATGGCTATTTCAATATAG+TGG - chr7_4:58403678-58403697 None:intergenic 30.0%
ATGGTGCAATAATAAGACAT+TGG - chr7_4:58403762-58403781 None:intergenic 30.0%
GACATGAAAATTTCAAAGCA+TGG - chr7_4:58403879-58403898 None:intergenic 30.0%
CTACGTGTATATAATGATTC+AGG + chr7_4:58403898-58403917 Msa1166290:intron 30.0%
ATTTACCTTGTGAAGTGAAT+AGG - chr7_4:58403992-58404011 None:intergenic 30.0%
TGATACACCGTTAGTATAAA+AGG + chr7_4:58404176-58404195 Msa1166290:intron 30.0%
ATAGCAAAACTACATTTGAC+AGG - chr7_4:58404388-58404407 None:intergenic 30.0%
AAGAGCTGAATCATATCTAA+AGG + chr7_4:58404751-58404770 Msa1166290:CDS 30.0%
GTATAATGTTCGATGTGTTT+GGG - chr7_4:58404787-58404806 None:intergenic 30.0%
TGTATAATGTTCGATGTGTT+TGG - chr7_4:58404788-58404807 None:intergenic 30.0%
AAACACATCGAACATTATAC+AGG + chr7_4:58404787-58404806 Msa1166290:CDS 30.0%
! AAGGAACAAGATTTTCACAA+TGG - chr7_4:58404820-58404839 None:intergenic 30.0%
!! AGGTTGATATCTTCTGATAA+AGG - chr7_4:58404839-58404858 None:intergenic 30.0%
!! CATTGATTAGCCTATTAACA+AGG - chr7_4:58404859-58404878 None:intergenic 30.0%
TTTCTTCGAACGAGTTATAT+CGG + chr7_4:58405024-58405043 Msa1166290:CDS 30.0%
! TATATCGGTTATGAAATCGA+AGG + chr7_4:58405039-58405058 Msa1166290:CDS 30.0%
! ATATCGGTTATGAAATCGAA+GGG + chr7_4:58405040-58405059 Msa1166290:CDS 30.0%
!! AGAGTTGATCAGCAAAATTT+TGG + chr7_4:58405072-58405091 Msa1166290:CDS 30.0%
TATGCACATAATTCTCTTCA+AGG + chr7_4:58405100-58405119 Msa1166290:CDS 30.0%
ATGCACATAATTCTCTTCAA+GGG + chr7_4:58405101-58405120 Msa1166290:CDS 30.0%
TTGAATTGCAGAAGAAACAA+AGG + chr7_4:58405149-58405168 Msa1166290:CDS 30.0%
TGAATTGCAGAAGAAACAAA+GGG + chr7_4:58405150-58405169 Msa1166290:CDS 30.0%
AACTTCTTGTAGAAGTGATT+TGG + chr7_4:58405282-58405301 Msa1166290:CDS 30.0%
TTAAGAATTGAGCTTTGCTT+TGG - chr7_4:58405526-58405545 None:intergenic 30.0%
AAAGCAAAGCTCAATTCTTA+AGG + chr7_4:58405525-58405544 Msa1166290:CDS 30.0%
!!! GATTTTGAGTTCTAACCTTA+AGG - chr7_4:58405693-58405712 None:intergenic 30.0%
!! AATCAATTGTTTTGCTTAGG+CGG - chr7_4:58406085-58406104 None:intergenic 30.0%
!! GACAATCAATTGTTTTGCTT+AGG - chr7_4:58406088-58406107 None:intergenic 30.0%
AAGTAACAAGAATGAGAATG+AGG + chr7_4:58406360-58406379 Msa1166290:CDS 30.0%
!! TTCTCTTTTGAAAAGGAAAC+CGG - chr7_4:58406559-58406578 None:intergenic 30.0%
!!! TGTGGTTACTTTTCTTGACA+TGG - chr7_4:58402620-58402639 None:intergenic 35.0%
AGATGGAGGAAAATAAATGC+AGG - chr7_4:58402674-58402693 None:intergenic 35.0%
! TTCTCCATGACACTATCTTT+TGG + chr7_4:58402743-58402762 Msa1166290:five_prime_UTR 35.0%
TGAACCAAAAGATAGTGTCA+TGG - chr7_4:58402750-58402769 None:intergenic 35.0%
AACTTTCCATTGACAGAAAC+TGG + chr7_4:58402790-58402809 Msa1166290:five_prime_UTR 35.0%
AAAATGGGAGTTGTAACTCT+TGG + chr7_4:58402889-58402908 Msa1166290:exon 35.0%
!! AGTCTTATTGAGTTCGAGTT+TGG + chr7_4:58403171-58403190 Msa1166290:intron 35.0%
! GTCTTATTGAGTTCGAGTTT+GGG + chr7_4:58403172-58403191 Msa1166290:intron 35.0%
! TCTTATTGAGTTCGAGTTTG+GGG + chr7_4:58403173-58403192 Msa1166290:intron 35.0%
CAACCATAATAGGATCTGAA+GGG - chr7_4:58403244-58403263 None:intergenic 35.0%
TCAACCATAATAGGATCTGA+AGG - chr7_4:58403245-58403264 None:intergenic 35.0%
! TGTTTGTGTTGGTATTTCGT+AGG - chr7_4:58403279-58403298 None:intergenic 35.0%
ACGAAATACCAACACAAACA+CGG + chr7_4:58403279-58403298 Msa1166290:intron 35.0%
TTTGGTAAAGGACTACATCA+AGG - chr7_4:58403414-58403433 None:intergenic 35.0%
! ACATGATGCTCGATTTTGAA+TGG + chr7_4:58403439-58403458 Msa1166290:intron 35.0%
! GCTTTTGGCCTAAATGAATT+TGG + chr7_4:58403537-58403556 Msa1166290:intron 35.0%
!!! CCGACAATGGACAATTTTTT+TGG + chr7_4:58403574-58403593 Msa1166290:intron 35.0%
GGATAAGAATAGCCTCAAAA+TGG - chr7_4:58403741-58403760 None:intergenic 35.0%
GAAAATTTCAAAGCATGGCA+AGG - chr7_4:58403874-58403893 None:intergenic 35.0%
ATCAACCTATTCACTTCACA+AGG + chr7_4:58403984-58404003 Msa1166290:CDS 35.0%
! ACATTCAACATGGTTTTCTC+TGG + chr7_4:58404047-58404066 Msa1166290:intron 35.0%
! TCTGGTTTACATTCCAAGTT+AGG + chr7_4:58404065-58404084 Msa1166290:intron 35.0%
CTAGAAACAAGAGGAAACTA+GGG - chr7_4:58404512-58404531 None:intergenic 35.0%
! TTTCTAGGAGTGGAAGATTT+AGG + chr7_4:58404525-58404544 Msa1166290:CDS 35.0%
ATAGCTGCAAAATTCTGCTA+TGG + chr7_4:58404629-58404648 Msa1166290:CDS 35.0%
ATTCTGCTATGGAATCAATG+TGG + chr7_4:58404640-58404659 Msa1166290:CDS 35.0%
TAGCATAGCAATATTCGAGA+GGG - chr7_4:58404672-58404691 None:intergenic 35.0%
ATAGCATAGCAATATTCGAG+AGG - chr7_4:58404673-58404692 None:intergenic 35.0%
CTTCTGCAATTCAATGTCAA+GGG - chr7_4:58405143-58405162 None:intergenic 35.0%
TCTTCTGCAATTCAATGTCA+AGG - chr7_4:58405144-58405163 None:intergenic 35.0%
! TACTTTTCTGAATTTGGACG+AGG + chr7_4:58405426-58405445 Msa1166290:CDS 35.0%
! GCAAGTGCTATGAATTTTGA+TGG - chr7_4:58405607-58405626 None:intergenic 35.0%
ATAGGTTCATCCGAACATTA+AGG + chr7_4:58406046-58406065 Msa1166290:intron 35.0%
ACTTGTACACCTATTTGAAC+TGG - chr7_4:58406161-58406180 None:intergenic 35.0%
GGACACAATCAAATCTTGTT+TGG + chr7_4:58406224-58406243 Msa1166290:CDS 35.0%
! CACAATCAAATCTTGTTTGG+TGG + chr7_4:58406227-58406246 Msa1166290:CDS 35.0%
! ATCTTGTTTGGTGGTATTCA+TGG + chr7_4:58406236-58406255 Msa1166290:CDS 35.0%
GTCAATTTCCTCAAAGATCA+GGG + chr7_4:58406258-58406277 Msa1166290:CDS 35.0%
TCCTAGAGATAACTATGCAT+CGG + chr7_4:58406307-58406326 Msa1166290:CDS 35.0%
GAGAATGAGGTTGAATGATT+TGG + chr7_4:58406373-58406392 Msa1166290:CDS 35.0%
TTCCGTATTAACAGTATTCG+TGG + chr7_4:58406497-58406516 Msa1166290:CDS 35.0%
TGCCACGAATACTGTTAATA+CGG - chr7_4:58406502-58406521 None:intergenic 35.0%
!! TCTCTTTTGAAAAGGAAACC+GGG - chr7_4:58406558-58406577 None:intergenic 35.0%
! GGTTTCCTTTTCAAAAGAGA+AGG + chr7_4:58406558-58406577 Msa1166290:CDS 35.0%
ACTATAGTCATGAAACTGAG+TGG - chr7_4:58406586-58406605 None:intergenic 35.0%
TCTCGTCAGTGGTAGAAAAT+GGG + chr7_4:58402874-58402893 Msa1166290:exon 40.0%
GAATTGAAGCCTAGTGTTTC+AGG + chr7_4:58402913-58402932 Msa1166290:CDS 40.0%
GCATGTCTTATGCTTGAACT+TGG - chr7_4:58402955-58402974 None:intergenic 40.0%
! CTTATTGAGTTCGAGTTTGG+GGG + chr7_4:58403174-58403193 Msa1166290:intron 40.0%
ATCAATGTCCGTGTTTGTGT+TGG - chr7_4:58403290-58403309 None:intergenic 40.0%
! TGTTAGTGTCGTGTCGTTAT+TGG + chr7_4:58403351-58403370 Msa1166290:intron 40.0%
GTTATTGGACACCTTGAGAT+TGG + chr7_4:58403366-58403385 Msa1166290:intron 40.0%
TCGAGCATCATGTCATTGTT+TGG - chr7_4:58403432-58403451 None:intergenic 40.0%
!!! CAGGAAGAGTCTTTTTTTGC+AGG + chr7_4:58403917-58403936 Msa1166290:intron 40.0%
TCACTGGAGACATCAGATAT+TGG - chr7_4:58403943-58403962 None:intergenic 40.0%
TACTTGGATGGTAAGATCAC+TGG - chr7_4:58403959-58403978 None:intergenic 40.0%
AGTGATCTTACCATCCAAGT+AGG + chr7_4:58403958-58403977 Msa1166290:CDS 40.0%
!! AATAGGTTGATGCTCCTACT+TGG - chr7_4:58403975-58403994 None:intergenic 40.0%
GGTTTACATTCCAAGTTAGG+TGG + chr7_4:58404068-58404087 Msa1166290:intron 40.0%
CTATTCATTGCCACCTAACT+TGG - chr7_4:58404081-58404100 None:intergenic 40.0%
GTTAGGTGGCAATGAATAGT+TGG + chr7_4:58404082-58404101 Msa1166290:intron 40.0%
! CCAAGAGCTCAAAAGCATAA+TGG - chr7_4:58404422-58404441 None:intergenic 40.0%
! CCATTATGCTTTTGAGCTCT+TGG + chr7_4:58404419-58404438 Msa1166290:intron 40.0%
! TTATGCTTTTGAGCTCTTGG+TGG + chr7_4:58404422-58404441 Msa1166290:intron 40.0%
CCTAGAAACAAGAGGAAACT+AGG - chr7_4:58404513-58404532 None:intergenic 40.0%
! CCTAGTTTCCTCTTGTTTCT+AGG + chr7_4:58404510-58404529 Msa1166290:intron 40.0%
!! TTTCCTCTTGTTTCTAGGAG+TGG + chr7_4:58404515-58404534 Msa1166290:CDS 40.0%
TGCAAAGAGCAACTAACTTC+TGG + chr7_4:58404896-58404915 Msa1166290:CDS 40.0%
AACCAGAAACACCCTTAGAT+TGG + chr7_4:58404969-58404988 Msa1166290:CDS 40.0%
AGAAACACCCTTAGATTGGT+GGG + chr7_4:58404973-58404992 Msa1166290:CDS 40.0%
GCTTACTACCAACTCAATCT+AGG + chr7_4:58405194-58405213 Msa1166290:CDS 40.0%
! GAGCTTTTCCTAGATTGAGT+TGG - chr7_4:58405205-58405224 None:intergenic 40.0%
! CTTGTAGAAGTGATTTGGAG+AGG + chr7_4:58405287-58405306 Msa1166290:CDS 40.0%
! TTTTCTGAATTTGGACGAGG+TGG + chr7_4:58405429-58405448 Msa1166290:CDS 40.0%
GAGTATGAATTTGACAGTCC+TGG + chr7_4:58405496-58405515 Msa1166290:CDS 40.0%
AGCTGTTGACATCTTCCTTA+AGG + chr7_4:58405675-58405694 Msa1166290:CDS 40.0%
TCATCCGAACATTAAGGACT+CGG + chr7_4:58406052-58406071 Msa1166290:CDS 40.0%
! TGGTAGCCTTTCATTTTGTG+CGG - chr7_4:58406141-58406160 None:intergenic 40.0%
GAAAGGCTACCAGTTCAAAT+AGG + chr7_4:58406149-58406168 Msa1166290:CDS 40.0%
GGTCAATTTCCTCAAAGATC+AGG + chr7_4:58406257-58406276 Msa1166290:CDS 40.0%
ACCGATGCATAGTTATCTCT+AGG - chr7_4:58406311-58406330 None:intergenic 40.0%
GATTTGAAGAATTTGCGTGC+AGG - chr7_4:58406443-58406462 None:intergenic 40.0%
ATTAACAGTATTCGTGGCAG+TGG + chr7_4:58406503-58406522 Msa1166290:CDS 40.0%
!! TGGCACCTTCTCTTTTGAAA+AGG - chr7_4:58406566-58406585 None:intergenic 40.0%
GGAGTTTGATCTAGCGAAAA+GGG + chr7_4:58406720-58406739 Msa1166290:three_prime_UTR 40.0%
AAAGGTGGTGAATGTGTGTG+TGG - chr7_4:58402638-58402657 None:intergenic 45.0%
! GGACACTTTTCAGTGAAAGG+TGG - chr7_4:58402653-58402672 None:intergenic 45.0%
! GCAGGACACTTTTCAGTGAA+AGG - chr7_4:58402656-58402675 None:intergenic 45.0%
GCTTCTCCAGTTTCTGTCAA+TGG - chr7_4:58402799-58402818 None:intergenic 45.0%
GAAACACATAGTCTCGTCAG+TGG + chr7_4:58402863-58402882 Msa1166290:five_prime_UTR 45.0%
GTCTCGTCAGTGGTAGAAAA+TGG + chr7_4:58402873-58402892 Msa1166290:exon 45.0%
AGCCTAGTGTTTCAGGAAGA+AGG + chr7_4:58402920-58402939 Msa1166290:CDS 45.0%
GTCCTTCTTCCTGAAACACT+AGG - chr7_4:58402925-58402944 None:intergenic 45.0%
GCATAAGACATGCCACTGAA+TGG + chr7_4:58402962-58402981 Msa1166290:CDS 45.0%
CCATAATAGGATCTGAAGGG+AGG - chr7_4:58403241-58403260 None:intergenic 45.0%
CCTCCCTTCAGATCCTATTA+TGG + chr7_4:58403238-58403257 Msa1166290:intron 45.0%
AATGCAAAGCTCACCGACAA+TGG + chr7_4:58403561-58403580 Msa1166290:intron 45.0%
ATTGGAGTTTCACGCTAGCA+TGG - chr7_4:58403637-58403656 None:intergenic 45.0%
CTTCCACTCCTAGAAACAAG+AGG - chr7_4:58404521-58404540 None:intergenic 45.0%
TCAAATGCATCTACACCACC+TGG - chr7_4:58404608-58404627 None:intergenic 45.0%
!! CACCAATCTAAGGGTGTTTC+TGG - chr7_4:58404974-58404993 None:intergenic 45.0%
CAGAAACACCCTTAGATTGG+TGG + chr7_4:58404972-58404991 Msa1166290:CDS 45.0%
GAAACACCCTTAGATTGGTG+GGG + chr7_4:58404974-58404993 Msa1166290:CDS 45.0%
GAGTTTCCCCACCAATCTAA+GGG - chr7_4:58404983-58405002 None:intergenic 45.0%
AGAGTTTCCCCACCAATCTA+AGG - chr7_4:58404984-58405003 None:intergenic 45.0%
! GTAGAAGTGATTTGGAGAGG+CGG + chr7_4:58405290-58405309 Msa1166290:CDS 45.0%
! GATCGGTTTACAACTCGATC+AGG + chr7_4:58405312-58405331 Msa1166290:CDS 45.0%
ATTGTGTTGTGAGCACTCGA+AGG - chr7_4:58405373-58405392 None:intergenic 45.0%
AGCACTTGCAGAACTACTTC+CGG + chr7_4:58405618-58405637 Msa1166290:CDS 45.0%
AGAGTTGAATCACAGTGTCG+CGG - chr7_4:58405959-58405978 None:intergenic 45.0%
AGGCTTCGAAATGCGATGAA+TGG + chr7_4:58406200-58406219 Msa1166290:CDS 45.0%
CTTCGAAATGCGATGAATGG+AGG + chr7_4:58406203-58406222 Msa1166290:CDS 45.0%
TTTCCTCAAAGATCAGGGAG+TGG + chr7_4:58406263-58406282 Msa1166290:CDS 45.0%
ATACCACTCCCTGATCTTTG+AGG - chr7_4:58406269-58406288 None:intergenic 45.0%
CAAAGATCAGGGAGTGGTAT+AGG + chr7_4:58406269-58406288 Msa1166290:CDS 45.0%
GGGAGTTTGATCTAGCGAAA+AGG + chr7_4:58406719-58406738 Msa1166290:three_prime_UTR 45.0%
!! TTAAATTAGATTATATATTT+AGG + chr7_4:58402693-58402712 Msa1166290:five_prime_UTR 5.0%
! GGTTGATGCTCCTACTTGGA+TGG - chr7_4:58403971-58403990 None:intergenic 50.0%
! AGTGATTTGGAGAGGCGGAT+CGG + chr7_4:58405295-58405314 Msa1166290:CDS 50.0%
GCACTCGAAGGTGAATTCGT+TGG - chr7_4:58405361-58405380 None:intergenic 50.0%
!! GAGCTTTGCTTTGGAGATCC+AGG - chr7_4:58405517-58405536 None:intergenic 50.0%
CTTGTAACGCGAGCATGATC+CGG - chr7_4:58405640-58405659 None:intergenic 50.0%
CGCTCCGAGTCCTTAATGTT+CGG - chr7_4:58406059-58406078 None:intergenic 50.0%
GCCATGCCGCACAAAATGAA+AGG + chr7_4:58406132-58406151 Msa1166290:CDS 50.0%
! GCCTTTCATTTTGTGCGGCA+TGG - chr7_4:58406136-58406155 None:intergenic 50.0%
TCAGGGAGTGGTATAGGAAG+TGG + chr7_4:58406275-58406294 Msa1166290:CDS 50.0%
AGTATTCGTGGCAGTGGAAC+TGG + chr7_4:58406509-58406528 Msa1166290:CDS 50.0%
GAAGGTCTAGTCCACAACCA+CGG + chr7_4:58406531-58406550 Msa1166290:CDS 50.0%
TGCATCTACACCACCTGGCA+CGG - chr7_4:58404603-58404622 None:intergenic 55.0%
CATGCTCGCGTTACAAGCGA+TGG + chr7_4:58405643-58405662 Msa1166290:CDS 55.0%
TTCGTGGCAGTGGAACTGGA+AGG + chr7_4:58406513-58406532 Msa1166290:CDS 55.0%
TGAAAAGGAAACCGGGACCG+TGG - chr7_4:58406551-58406570 None:intergenic 55.0%
ACGGTCGGAAGACTTACGCG+CGG - chr7_4:58404584-58404603 None:intergenic 60.0%
GTAAGTCTTCCGACCGTGCC+AGG + chr7_4:58404587-58404606 Msa1166290:CDS 60.0%
TCTACACCACCTGGCACGGT+CGG - chr7_4:58404599-58404618 None:intergenic 60.0%
ATCACAGTGTCGCGGCAGCA+AGG - chr7_4:58405951-58405970 None:intergenic 60.0%
CTAGTCCACAACCACGGTCC+CGG + chr7_4:58406537-58406556 Msa1166290:CDS 60.0%
AGTCTTCCGACCGTGCCAGG+TGG + chr7_4:58404590-58404609 Msa1166290:CDS 65.0%
GGAAACCGGGACCGTGGTTG+TGG - chr7_4:58406545-58406564 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 58402584 58406753 58402584 ID=Msa1166290;Name=Msa1166290
chr7_4 mRNA 58402584 58406753 58402584 ID=Msa1166290-mRNA-1;Parent=Msa1166290;Name=Msa1166290-mRNA-1;_AED=0.10;_eAED=0.10;_QI=308|1|1|1|1|1|4|155|629
chr7_4 exon 58402584 58402983 58402584 ID=Msa1166290-mRNA-1:exon:17893;Parent=Msa1166290-mRNA-1
chr7_4 exon 58403939 58404005 58403939 ID=Msa1166290-mRNA-1:exon:17894;Parent=Msa1166290-mRNA-1
chr7_4 exon 58404515 58405696 58404515 ID=Msa1166290-mRNA-1:exon:17895;Parent=Msa1166290-mRNA-1
chr7_4 exon 58406050 58406753 58406050 ID=Msa1166290-mRNA-1:exon:17896;Parent=Msa1166290-mRNA-1
chr7_4 five_prime_UTR 58402584 58402891 58402584 ID=Msa1166290-mRNA-1:five_prime_utr;Parent=Msa1166290-mRNA-1
chr7_4 CDS 58402892 58402983 58402892 ID=Msa1166290-mRNA-1:cds;Parent=Msa1166290-mRNA-1
chr7_4 CDS 58403939 58404005 58403939 ID=Msa1166290-mRNA-1:cds;Parent=Msa1166290-mRNA-1
chr7_4 CDS 58404515 58405696 58404515 ID=Msa1166290-mRNA-1:cds;Parent=Msa1166290-mRNA-1
chr7_4 CDS 58406050 58406598 58406050 ID=Msa1166290-mRNA-1:cds;Parent=Msa1166290-mRNA-1
chr7_4 three_prime_UTR 58406599 58406753 58406599 ID=Msa1166290-mRNA-1:three_prime_utr;Parent=Msa1166290-mRNA-1
Gene Sequence

>Msa1166290

ATGGGAGTTGTAACTCTTGGTGAATTGAAGCCTAGTGTTTCAGGAAGAAGGACTTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATATCTGATGTCTCCAGTGATCTTACCATCCAAGTAGGAGCATCAACCTATTCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGATTTAGGAAGCTGCTATCTGAATCAAAAGATTCTAAAGTTCCGCGCGTAAGTCTTCCGACCGTGCCAGGTGGTGTAGATGCATTTGAAATAGCTGCAAAATTCTGCTATGGAATCAATGTGGAATTCACCCTCTCGAATATTGCTATGCTATATTGTATATCTCATTTTCTTGAAATGACAGAAGAATTCTCAGAAAAGAATTTGGTGACAAGAGCTGAATCATATCTAAAGGAAACGGTACTCCCAAACACATCGAACATTATACAGGTTCTTCACCATTGTGAAAATCTTGTTCCTTTATCAGAAGATATCAACCTTGTTAATAGGCTAATCAATGCAATTGCAAATAATGCATGCAAAGAGCAACTAACTTCTGGTTTGTTAAAACTTGATCACAACTTTCCTTCTAAAACATTATCAATGATGGAACCAGAAACACCCTTAGATTGGTGGGGAAACTCTTTCAACGTTCTTAGTCTTGATTTCTTCGAACGAGTTATATCGGTTATGAAATCGAAGGGATTAACACAAGAGTTGATCAGCAAAATTTTGGTAAACTATGCACATAATTCTCTTCAAGGGACTAGTAGTGTTAGTTCCCTTGACATTGAATTGCAGAAGAAACAAAGGGTCATTGTTGAAACTATAGTTCGCTTACTACCAACTCAATCTAGGAAAAGCTCAGTTCCAATAGCATTTCTTTCATGTTTATTGAAAACTGCAATAGCAACATTAGTATCAACTTCTTGTAGAAGTGATTTGGAGAGGCGGATCGGTTTACAACTCGATCAGGCAATTCTTGAAGACATACTTATTCCAACGAATTCACCTTCGAGTGCTCACAACACAATGTATGATATAGATTCAATTTTGAGGATCTTTTCTACTTTTCTGAATTTGGACGAGGTGGATGATGAAGACAGTGACTTCAGAGATGAAAATCAAATGATGTATGAGTATGAATTTGACAGTCCTGGATCTCCAAAGCAAAGCTCAATTCTTAAGGTATCCAAATTACTTGACAATTTTCTCGCTGAAGTAGCACTAGACTCAAACTTGTTGCCATCAAAATTCATAGCACTTGCAGAACTACTTCCGGATCATGCTCGCGTTACAAGCGATGGACTCTATCGAGCTGTTGACATCTTCCTTAAGGTTCATCCGAACATTAAGGACTCGGAGCGATACCGCCTAAGCAAAACAATTGATTGTCAGAAACTATCTCAAGAAGCATGCAGCCATGCCGCACAAAATGAAAGGCTACCAGTTCAAATAGGTGTACAAGTTCTTTACTACGAACAAATAAGGCTTCGAAATGCGATGAATGGAGGACACAATCAAATCTTGTTTGGTGGTATTCATGGTCAATTTCCTCAAAGATCAGGGAGTGGTATAGGAAGTGGAGCAATTTCTCCTAGAGATAACTATGCATCGGTAAGAAGAGAGAATCGAGAGCTGAAGCTTGAAGTAACAAGAATGAGAATGAGGTTGAATGATTTGGAGAAAGATCATGTTTCTATGAAGCAAGAGCTTGTGAAGACACATCCTGCACGCAAATTCTTCAAATCATTTGCTCAAAAATTAAGAAAGTTCAATGCTCTATTCCGTATTAACAGTATTCGTGGCAGTGGAACTGGAAGGTCTAGTCCACAACCACGGTCCCGGTTTCCTTTTCAAAAGAGAAGGTGCCACTCAGTTTCATGA
Protein sequence

>Msa1166290

MGVVTLGELKPSVSGRRTFRPSSSIRHATEWPISDVSSDLTIQVGASTYSLHKFPLVSRSGRFRKLLSESKDSKVPRVSLPTVPGGVDAFEIAAKFCYGINVEFTLSNIAMLYCISHFLEMTEEFSEKNLVTRAESYLKETVLPNTSNIIQVLHHCENLVPLSEDINLVNRLINAIANNACKEQLTSGLLKLDHNFPSKTLSMMEPETPLDWWGNSFNVLSLDFFERVISVMKSKGLTQELISKILVNYAHNSLQGTSSVSSLDIELQKKQRVIVETIVRLLPTQSRKSSVPIAFLSCLLKTAIATLVSTSCRSDLERRIGLQLDQAILEDILIPTNSPSSAHNTMYDIDSILRIFSTFLNLDEVDDEDSDFRDENQMMYEYEFDSPGSPKQSSILKVSKLLDNFLAEVALDSNLLPSKFIALAELLPDHARVTSDGLYRAVDIFLKVHPNIKDSERYRLSKTIDCQKLSQEACSHAAQNERLPVQIGVQVLYYEQIRLRNAMNGGHNQILFGGIHGQFPQRSGSGIGSGAISPRDNYASVRRENRELKLEVTRMRMRLNDLEKDHVSMKQELVKTHPARKFFKSFAQKLRKFNALFRINSIRGSGTGRSSPQPRSRFPFQKRRCHSVS*