Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044440 | sp|P80728|MAVI_CUCPE | 55.446 | 101 | 45 | 0 | 22 | 122 | 1 | 101 | 2.40e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044440 | G7ID83 | 97.297 | 185 | 5 | 0 | 1 | 185 | 1 | 185 | 1.57e-128 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038150 | Msa0044440 | -0.821991 | 3.007233e-53 | -8.615850e-47 |
| Msa0044440 | Msa0063940 | 0.802488 | 5.478894e-49 | -8.615850e-47 |
| Msa0044440 | Msa0088520 | 0.915443 | 5.854024e-85 | -8.615850e-47 |
| Msa0044440 | Msa0133140 | -0.823140 | 1.625594e-53 | -8.615850e-47 |
| Msa0044440 | Msa0135230 | 0.940691 | 1.513089e-100 | -8.615850e-47 |
| Msa0044440 | Msa0168380 | 0.801884 | 7.292288e-49 | -8.615850e-47 |
| Msa0044440 | Msa0183310 | -0.828754 | 7.538749e-55 | -8.615850e-47 |
| Msa0044440 | Msa0258910 | 0.800211 | 1.602812e-48 | -8.615850e-47 |
| Msa0044440 | Msa0272790 | 0.819779 | 9.708774e-53 | -8.615850e-47 |
| Msa0044440 | Msa0300470 | 0.814631 | 1.396428e-51 | -8.615850e-47 |
| Msa0044440 | Msa0325350 | 0.801863 | 7.366554e-49 | -8.615850e-47 |
| Msa0044440 | Msa0336120 | 0.808716 | 2.700832e-50 | -8.615850e-47 |
| Msa0044440 | Msa0337970 | 0.822187 | 2.709557e-53 | -8.615850e-47 |
| Msa0044440 | Msa0355080 | -0.827920 | 1.198237e-54 | -8.615850e-47 |
| Msa0044440 | Msa0384590 | 0.815271 | 1.006872e-51 | -8.615850e-47 |
| Msa0044440 | Msa0421220 | -0.833303 | 5.763608e-56 | -8.615850e-47 |
| Msa0044440 | Msa0434660 | 0.804018 | 2.642069e-49 | -8.615850e-47 |
| Msa0044440 | Msa0436440 | 0.810017 | 1.420972e-50 | -8.615850e-47 |
| Msa0044440 | Msa0438150 | -0.819300 | 1.248562e-52 | -8.615850e-47 |
| Msa0044440 | Msa0480900 | -0.807821 | 4.191245e-50 | -8.615850e-47 |
| Msa0044440 | Msa0513580 | -0.811329 | 7.394289e-51 | -8.615850e-47 |
| Msa0044440 | Msa0522540 | 0.811807 | 5.820265e-51 | -8.615850e-47 |
| Msa0044440 | Msa0526150 | 0.814824 | 1.265430e-51 | -8.615850e-47 |
| Msa0044440 | Msa0541880 | 0.810100 | 1.363416e-50 | -8.615850e-47 |
| Msa0044440 | Msa0541940 | 0.814375 | 1.591044e-51 | -8.615850e-47 |
| Msa0044440 | Msa0572360 | 0.820771 | 5.751055e-53 | -8.615850e-47 |
| Msa0044440 | Msa0579080 | 0.829553 | 4.826086e-55 | -8.615850e-47 |
| Msa0044440 | Msa0579160 | 0.839381 | 1.639931e-57 | -8.615850e-47 |
| Msa0044440 | Msa0579220 | 0.838254 | 3.207251e-57 | -8.615850e-47 |
| Msa0044440 | Msa0590620 | -0.806576 | 7.691471e-50 | -8.615850e-47 |
| Msa0044440 | Msa0610690 | 0.841079 | 5.906122e-58 | -8.615850e-47 |
| Msa0044440 | Msa0660260 | 0.807292 | 5.428287e-50 | -8.615850e-47 |
| Msa0044440 | Msa0685610 | 0.813709 | 2.231692e-51 | -8.615850e-47 |
| Msa0044440 | Msa0742370 | -0.808677 | 2.754352e-50 | -8.615850e-47 |
| Msa0044440 | Msa0755480 | -0.805022 | 1.631724e-49 | -8.615850e-47 |
| Msa0044440 | Msa0823480 | -0.822794 | 1.957817e-53 | -8.615850e-47 |
| Msa0044440 | Msa0827340 | -0.822331 | 2.507703e-53 | -8.615850e-47 |
| Msa0044440 | Msa0862480 | -0.805447 | 1.328839e-49 | -8.615850e-47 |
| Msa0044440 | Msa0882270 | -0.808597 | 2.864011e-50 | -8.615850e-47 |
| Msa0044440 | Msa0882310 | -0.825499 | 4.534497e-54 | -8.615850e-47 |
| Msa0044440 | Msa0970040 | 0.811185 | 7.944334e-51 | -8.615850e-47 |
| Msa0044440 | Msa1033430 | 0.818060 | 2.386652e-52 | -8.615850e-47 |
| Msa0044440 | Msa1038860 | 0.808665 | 2.770713e-50 | -8.615850e-47 |
| Msa0044440 | Msa1039440 | -0.831995 | 1.216696e-55 | -8.615850e-47 |
| Msa0044440 | Msa1041060 | 0.804332 | 2.272618e-49 | -8.615850e-47 |
| Msa0044440 | Msa1044250 | 0.802362 | 5.816949e-49 | -8.615850e-47 |
| Msa0044440 | Msa1073050 | 0.807089 | 5.993428e-50 | -8.615850e-47 |
| Msa0044440 | Msa1094810 | 0.810730 | 9.969421e-51 | -8.615850e-47 |
| Msa0044440 | Msa1127200 | 0.802483 | 5.491745e-49 | -8.615850e-47 |
| Msa0044440 | Msa1128520 | -0.813595 | 2.363692e-51 | -8.615850e-47 |
| Msa0044440 | Msa1133750 | 0.836300 | 1.014506e-56 | -8.615850e-47 |
| Msa0044440 | Msa1140930 | 0.802578 | 5.248755e-49 | -8.615850e-47 |
| Msa0044440 | Msa1146980 | 0.801162 | 1.025283e-48 | -8.615850e-47 |
| Msa0044440 | Msa1154320 | 0.829480 | 5.027562e-55 | -8.615850e-47 |
| Msa0044440 | Msa1165460 | 0.800777 | 1.228976e-48 | -8.615850e-47 |
| Msa0044440 | Msa1183900 | 0.803502 | 3.381563e-49 | -8.615850e-47 |
| Msa0044440 | Msa1197720 | 0.802753 | 4.831325e-49 | -8.615850e-47 |
| Msa0044440 | Msa1203650 | 0.804868 | 1.756852e-49 | -8.615850e-47 |
| Msa0044440 | Msa1308860 | 0.821477 | 3.954700e-53 | -8.615850e-47 |
| Msa0044440 | Msa1352580 | 0.804109 | 2.529697e-49 | -8.615850e-47 |
| Msa0044440 | Msa1352600 | -0.819468 | 1.143447e-52 | -8.615850e-47 |
| Msa0044440 | Msa1356450 | 0.800279 | 1.552571e-48 | -8.615850e-47 |
| Msa0044440 | Msa1377140 | 0.800940 | 1.138360e-48 | -8.615850e-47 |
| Msa0044440 | Msa1379940 | 0.806776 | 6.978238e-50 | -8.615850e-47 |
| Msa0044440 | Msa1424870 | 0.819811 | 9.544657e-53 | -8.615850e-47 |
| Msa0044440 | Msa1428230 | -0.824777 | 6.716342e-54 | -8.615850e-47 |
| Msa0044440 | Msa1430460 | -0.824273 | 8.826015e-54 | -8.615850e-47 |
| Msa0044440 | Msa1433570 | 0.831998 | 1.214592e-55 | -8.615850e-47 |
| Msa0044440 | Msa1453030 | 0.802750 | 4.836569e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044440 | MtrunA17_Chr1g0205701 | 97.297 | 185 | 5 | 0 | 1 | 185 | 1 | 185 | 3.02e-132 | 368 |
| Msa0044440 | MtrunA17_Chr5g0394321 | 70.909 | 165 | 41 | 3 | 1 | 164 | 1 | 159 | 6.22e-85 | 248 |
| Msa0044440 | MtrunA17_Chr4g0064041 | 39.264 | 163 | 89 | 3 | 1 | 157 | 1 | 159 | 3.29e-27 | 105 |
| Msa0044440 | MtrunA17_Chr4g0064041 | 46.000 | 100 | 52 | 1 | 25 | 122 | 191 | 290 | 2.08e-26 | 103 |
| Msa0044440 | MtrunA17_Chr8g0335531 | 33.540 | 161 | 88 | 6 | 12 | 162 | 11 | 162 | 4.87e-27 | 101 |
| Msa0044440 | MtrunA17_Chr2g0323021 | 37.013 | 154 | 81 | 6 | 8 | 148 | 6 | 156 | 2.92e-24 | 95.1 |
| Msa0044440 | MtrunA17_Chr7g0253761 | 36.571 | 175 | 104 | 4 | 1 | 173 | 1 | 170 | 1.10e-23 | 92.0 |
| Msa0044440 | MtrunA17_Chr1g0177341 | 38.017 | 121 | 71 | 3 | 6 | 124 | 5 | 123 | 7.66e-23 | 89.4 |
| Msa0044440 | MtrunA17_Chr1g0177331 | 38.017 | 121 | 71 | 3 | 6 | 124 | 5 | 123 | 7.66e-23 | 89.4 |
| Msa0044440 | MtrunA17_Chr7g0253681 | 38.095 | 126 | 73 | 4 | 1 | 123 | 1 | 124 | 1.30e-22 | 89.0 |
| Msa0044440 | MtrunA17_Chr3g0132431 | 36.364 | 143 | 84 | 5 | 5 | 145 | 4 | 141 | 2.31e-22 | 89.0 |
| Msa0044440 | MtrunA17_Chr7g0253701 | 36.800 | 125 | 75 | 3 | 1 | 123 | 1 | 123 | 2.65e-22 | 88.2 |
| Msa0044440 | MtrunA17_Chr7g0253671 | 36.800 | 125 | 75 | 3 | 1 | 123 | 1 | 123 | 2.65e-22 | 88.2 |
| Msa0044440 | MtrunA17_Chr3g0132441 | 41.748 | 103 | 57 | 3 | 20 | 122 | 21 | 120 | 4.64e-22 | 88.2 |
| Msa0044440 | MtrunA17_Chr4g0040291 | 30.380 | 158 | 106 | 1 | 22 | 175 | 22 | 179 | 6.25e-22 | 87.8 |
| Msa0044440 | MtrunA17_Chr8g0335571 | 36.842 | 114 | 67 | 4 | 12 | 123 | 11 | 121 | 1.16e-21 | 87.4 |
| Msa0044440 | MtrunA17_Chr2g0331181 | 33.566 | 143 | 85 | 4 | 19 | 158 | 21 | 156 | 1.42e-21 | 87.0 |
| Msa0044440 | MtrunA17_Chr2g0301431 | 37.168 | 113 | 66 | 2 | 9 | 121 | 16 | 123 | 2.77e-21 | 84.3 |
| Msa0044440 | MtrunA17_Chr3g0125761 | 38.393 | 112 | 64 | 2 | 10 | 121 | 18 | 124 | 7.29e-21 | 83.6 |
| Msa0044440 | MtrunA17_Chr1g0196801 | 34.091 | 132 | 80 | 4 | 22 | 151 | 20 | 146 | 1.29e-20 | 84.3 |
| Msa0044440 | MtrunA17_Chr6g0483981 | 34.524 | 168 | 98 | 6 | 7 | 166 | 7 | 170 | 2.11e-20 | 87.8 |
| Msa0044440 | MtrunA17_Chr7g0253641 | 41.045 | 134 | 70 | 4 | 7 | 140 | 14 | 138 | 2.18e-20 | 84.7 |
| Msa0044440 | MtrunA17_Chr7g0253731 | 35.043 | 117 | 72 | 3 | 1 | 116 | 1 | 114 | 3.00e-20 | 82.8 |
| Msa0044440 | MtrunA17_Chr3g0132511 | 36.667 | 120 | 71 | 4 | 6 | 122 | 5 | 122 | 1.02e-19 | 82.8 |
| Msa0044440 | MtrunA17_Chr1g0188981 | 35.976 | 164 | 99 | 4 | 25 | 183 | 29 | 191 | 1.28e-19 | 82.0 |
| Msa0044440 | MtrunA17_Chr8g0380901 | 32.456 | 114 | 72 | 2 | 8 | 121 | 11 | 119 | 1.51e-19 | 79.7 |
| Msa0044440 | MtrunA17_Chr3g0132701 | 36.667 | 120 | 71 | 4 | 6 | 122 | 5 | 122 | 1.68e-19 | 82.0 |
| Msa0044440 | MtrunA17_Chr1g0150131 | 35.922 | 103 | 64 | 1 | 43 | 145 | 46 | 146 | 2.38e-19 | 80.9 |
| Msa0044440 | MtrunA17_Chr3g0136871 | 31.655 | 139 | 80 | 3 | 43 | 178 | 48 | 174 | 4.98e-19 | 80.1 |
| Msa0044440 | MtrunA17_Chr1g0211101 | 32.800 | 125 | 77 | 3 | 7 | 126 | 11 | 133 | 5.37e-19 | 80.1 |
| Msa0044440 | MtrunA17_Chr6g0459441 | 35.294 | 102 | 62 | 3 | 22 | 122 | 23 | 121 | 8.27e-19 | 79.3 |
| Msa0044440 | MtrunA17_Chr3g0125791 | 39.394 | 99 | 55 | 3 | 22 | 120 | 30 | 123 | 8.77e-19 | 78.2 |
| Msa0044440 | MtrunA17_Chr3g0132411 | 34.677 | 124 | 76 | 4 | 1 | 122 | 39 | 159 | 2.66e-18 | 77.8 |
| Msa0044440 | MtrunA17_Chr8g0380711 | 35.514 | 107 | 59 | 4 | 18 | 121 | 21 | 120 | 3.80e-18 | 76.3 |
| Msa0044440 | MtrunA17_Chr8g0360371 | 29.104 | 134 | 92 | 2 | 4 | 134 | 1 | 134 | 7.12e-18 | 79.3 |
| Msa0044440 | MtrunA17_Chr2g0324721 | 30.168 | 179 | 108 | 4 | 1 | 162 | 1 | 179 | 9.76e-18 | 77.0 |
| Msa0044440 | MtrunA17_Chr4g0039721 | 35.338 | 133 | 76 | 4 | 25 | 149 | 32 | 162 | 1.48e-17 | 76.3 |
| Msa0044440 | MtrunA17_Chr4g0062341 | 33.129 | 163 | 89 | 7 | 25 | 183 | 32 | 178 | 3.20e-17 | 75.5 |
| Msa0044440 | MtrunA17_Chr4g0062311 | 33.129 | 163 | 89 | 7 | 25 | 183 | 32 | 178 | 3.20e-17 | 75.5 |
| Msa0044440 | MtrunA17_Chr7g0253631 | 38.636 | 132 | 71 | 4 | 7 | 138 | 14 | 135 | 7.40e-17 | 75.5 |
| Msa0044440 | MtrunA17_Chr4g0041811 | 32.743 | 113 | 74 | 1 | 13 | 123 | 20 | 132 | 1.04e-16 | 74.7 |
| Msa0044440 | MtrunA17_Chr6g0458331 | 37.255 | 102 | 59 | 2 | 25 | 123 | 37 | 136 | 1.29e-16 | 73.6 |
| Msa0044440 | MtrunA17_Chr6g0481491 | 33.673 | 98 | 62 | 2 | 25 | 122 | 28 | 122 | 1.33e-16 | 74.3 |
| Msa0044440 | MtrunA17_Chr8g0387804 | 30.709 | 127 | 76 | 3 | 6 | 122 | 3 | 127 | 1.34e-15 | 69.7 |
| Msa0044440 | MtrunA17_Chr4g0064031 | 34.615 | 130 | 77 | 4 | 15 | 139 | 18 | 144 | 1.78e-15 | 70.5 |
| Msa0044440 | MtrunA17_Chr1g0185541 | 45.455 | 66 | 36 | 0 | 57 | 122 | 5 | 70 | 2.82e-15 | 67.4 |
| Msa0044440 | MtrunA17_Chr6g0453921 | 30.303 | 132 | 83 | 4 | 13 | 142 | 26 | 150 | 2.87e-15 | 70.1 |
| Msa0044440 | MtrunA17_Chr5g0440804 | 35.000 | 120 | 72 | 4 | 28 | 145 | 33 | 148 | 5.18e-15 | 69.3 |
| Msa0044440 | MtrunA17_Chr2g0306461 | 29.310 | 116 | 80 | 2 | 8 | 122 | 11 | 125 | 1.41e-14 | 68.9 |
| Msa0044440 | MtrunA17_Chr6g0453801 | 30.769 | 117 | 76 | 3 | 8 | 122 | 18 | 131 | 3.81e-14 | 67.0 |
| Msa0044440 | MtrunA17_Chr8g0385021 | 28.947 | 114 | 80 | 1 | 8 | 120 | 7 | 120 | 5.70e-14 | 68.2 |
| Msa0044440 | MtrunA17_Chr6g0453791 | 30.233 | 129 | 82 | 5 | 24 | 150 | 30 | 152 | 8.19e-14 | 66.2 |
| Msa0044440 | MtrunA17_Chr2g0289741 | 31.624 | 117 | 76 | 3 | 8 | 122 | 9 | 123 | 2.02e-13 | 65.1 |
| Msa0044440 | MtrunA17_Chr2g0324711 | 29.139 | 151 | 106 | 1 | 8 | 157 | 8 | 158 | 2.66e-13 | 67.0 |
| Msa0044440 | MtrunA17_Chr4g0033131 | 28.369 | 141 | 90 | 4 | 1 | 134 | 1 | 137 | 8.51e-13 | 63.5 |
| Msa0044440 | MtrunA17_Chr4g0033531 | 28.369 | 141 | 90 | 4 | 1 | 134 | 1 | 137 | 8.51e-13 | 63.5 |
| Msa0044440 | MtrunA17_Chr8g0385031 | 30.233 | 172 | 105 | 4 | 8 | 166 | 7 | 176 | 1.51e-12 | 64.3 |
| Msa0044440 | MtrunA17_Chr3g0144921 | 27.333 | 150 | 92 | 6 | 4 | 146 | 3 | 142 | 3.82e-12 | 61.6 |
| Msa0044440 | MtrunA17_Chr5g0440711 | 29.861 | 144 | 92 | 5 | 4 | 142 | 6 | 145 | 4.40e-12 | 60.8 |
| Msa0044440 | MtrunA17_Chr2g0317231 | 29.245 | 106 | 75 | 0 | 20 | 125 | 20 | 125 | 5.06e-12 | 63.5 |
| Msa0044440 | MtrunA17_Chr2g0319611 | 25.600 | 125 | 89 | 2 | 3 | 123 | 4 | 128 | 1.46e-11 | 61.2 |
| Msa0044440 | MtrunA17_Chr4g0001571 | 31.915 | 94 | 61 | 2 | 27 | 120 | 31 | 121 | 5.65e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044440 | AT5G26330.1 | 59.394 | 165 | 66 | 1 | 10 | 174 | 9 | 172 | 1.48e-66 | 202 |
| Msa0044440 | AT2G31050.1 | 42.636 | 129 | 72 | 2 | 10 | 137 | 13 | 140 | 1.68e-33 | 118 |
| Msa0044440 | AT2G26720.1 | 37.589 | 141 | 83 | 2 | 1 | 137 | 1 | 140 | 1.87e-33 | 118 |
| Msa0044440 | AT2G32300.1 | 34.940 | 166 | 93 | 5 | 1 | 165 | 1 | 152 | 3.09e-31 | 114 |
| Msa0044440 | AT2G32300.2 | 34.940 | 166 | 93 | 5 | 1 | 165 | 31 | 182 | 1.11e-30 | 113 |
| Msa0044440 | AT3G17675.1 | 42.708 | 96 | 53 | 1 | 27 | 122 | 34 | 127 | 1.72e-23 | 90.5 |
| Msa0044440 | AT3G27200.1 | 32.432 | 111 | 71 | 3 | 14 | 123 | 15 | 122 | 4.54e-23 | 90.9 |
| Msa0044440 | AT4G31840.1 | 33.333 | 156 | 92 | 4 | 28 | 180 | 31 | 177 | 1.07e-22 | 90.1 |
| Msa0044440 | AT5G07475.1 | 35.570 | 149 | 91 | 3 | 14 | 162 | 19 | 162 | 2.11e-22 | 89.7 |
| Msa0044440 | AT4G28365.1 | 29.944 | 177 | 108 | 4 | 1 | 161 | 1 | 177 | 6.60e-21 | 85.9 |
| Msa0044440 | AT3G53330.1 | 36.190 | 105 | 66 | 1 | 19 | 122 | 182 | 286 | 7.02e-21 | 87.8 |
| Msa0044440 | AT3G53330.1 | 40.230 | 87 | 46 | 3 | 7 | 92 | 8 | 89 | 2.52e-14 | 70.1 |
| Msa0044440 | AT3G60270.1 | 37.864 | 103 | 61 | 2 | 21 | 123 | 22 | 121 | 4.05e-20 | 83.6 |
| Msa0044440 | AT1G45063.2 | 40.000 | 100 | 59 | 1 | 24 | 122 | 148 | 247 | 1.89e-19 | 83.6 |
| Msa0044440 | AT1G45063.2 | 32.812 | 128 | 80 | 3 | 1 | 123 | 1 | 127 | 1.50e-18 | 81.3 |
| Msa0044440 | AT1G45063.1 | 40.000 | 100 | 59 | 1 | 24 | 122 | 148 | 247 | 2.37e-19 | 84.3 |
| Msa0044440 | AT1G45063.1 | 32.812 | 128 | 80 | 3 | 1 | 123 | 1 | 127 | 1.96e-18 | 82.0 |
| Msa0044440 | AT2G02850.1 | 31.858 | 113 | 72 | 2 | 8 | 120 | 19 | 126 | 4.84e-19 | 79.0 |
| Msa0044440 | AT5G20230.1 | 34.646 | 127 | 78 | 2 | 25 | 150 | 25 | 147 | 5.22e-19 | 80.9 |
| Msa0044440 | AT5G53870.2 | 29.545 | 176 | 110 | 4 | 1 | 165 | 1 | 173 | 1.49e-18 | 82.0 |
| Msa0044440 | AT2G25060.1 | 33.588 | 131 | 81 | 3 | 10 | 134 | 14 | 144 | 1.69e-18 | 79.0 |
| Msa0044440 | AT1G72230.1 | 35.433 | 127 | 80 | 2 | 40 | 165 | 36 | 161 | 1.86e-18 | 79.0 |
| Msa0044440 | AT5G53870.1 | 29.545 | 176 | 110 | 4 | 1 | 165 | 1 | 173 | 2.59e-18 | 81.6 |
| Msa0044440 | AT3G60280.1 | 39.806 | 103 | 59 | 2 | 21 | 123 | 20 | 119 | 2.89e-18 | 79.3 |
| Msa0044440 | AT3G20570.1 | 31.034 | 116 | 78 | 2 | 9 | 123 | 15 | 129 | 4.65e-18 | 78.6 |
| Msa0044440 | AT1G64640.1 | 29.341 | 167 | 92 | 4 | 4 | 161 | 6 | 155 | 4.92e-18 | 78.2 |
| Msa0044440 | AT4G30590.1 | 31.538 | 130 | 81 | 4 | 1 | 123 | 1 | 129 | 2.15e-17 | 76.3 |
| Msa0044440 | AT1G79800.1 | 31.618 | 136 | 84 | 3 | 9 | 137 | 18 | 151 | 4.65e-17 | 75.5 |
| Msa0044440 | AT5G57920.1 | 32.632 | 95 | 60 | 1 | 43 | 133 | 44 | 138 | 8.92e-17 | 74.7 |
| Msa0044440 | AT5G15350.1 | 33.835 | 133 | 80 | 4 | 7 | 137 | 10 | 136 | 9.96e-17 | 74.3 |
| Msa0044440 | AT4G27520.1 | 31.034 | 145 | 93 | 3 | 9 | 146 | 15 | 159 | 1.15e-16 | 76.6 |
| Msa0044440 | AT5G57920.2 | 27.007 | 137 | 94 | 2 | 3 | 133 | 1 | 137 | 1.61e-16 | 73.9 |
| Msa0044440 | AT5G57920.3 | 31.250 | 112 | 71 | 2 | 28 | 133 | 59 | 170 | 3.95e-16 | 73.6 |
| Msa0044440 | AT1G22480.1 | 31.746 | 189 | 105 | 7 | 1 | 183 | 1 | 171 | 2.55e-15 | 70.5 |
| Msa0044440 | AT2G44790.1 | 37.634 | 93 | 53 | 3 | 33 | 123 | 36 | 125 | 2.65e-15 | 71.2 |
| Msa0044440 | AT3G18590.1 | 34.286 | 105 | 59 | 5 | 25 | 123 | 27 | 127 | 5.78e-15 | 70.1 |
| Msa0044440 | AT5G25090.1 | 33.333 | 81 | 54 | 0 | 43 | 123 | 47 | 127 | 6.44e-15 | 69.7 |
| Msa0044440 | AT4G32490.1 | 27.811 | 169 | 99 | 4 | 8 | 158 | 12 | 175 | 3.80e-14 | 68.2 |
| Msa0044440 | AT2G23990.1 | 35.000 | 80 | 51 | 1 | 44 | 122 | 49 | 128 | 5.14e-14 | 67.8 |
| Msa0044440 | AT1G48940.1 | 31.538 | 130 | 77 | 6 | 5 | 126 | 4 | 129 | 1.69e-13 | 65.9 |
| Msa0044440 | AT5G14345.1 | 36.275 | 102 | 59 | 3 | 41 | 141 | 35 | 131 | 2.03e-13 | 64.7 |
| Msa0044440 | AT4G12880.1 | 33.010 | 103 | 64 | 3 | 22 | 122 | 26 | 125 | 3.72e-13 | 63.9 |
| Msa0044440 | AT4G01380.1 | 28.205 | 156 | 79 | 6 | 30 | 180 | 77 | 204 | 4.46e-13 | 65.1 |
| Msa0044440 | AT2G27035.1 | 25.161 | 155 | 104 | 5 | 2 | 155 | 8 | 151 | 4.76e-12 | 61.6 |
| Msa0044440 | AT1G17800.1 | 29.167 | 120 | 78 | 4 | 8 | 123 | 21 | 137 | 1.37e-11 | 59.7 |
| Msa0044440 | AT3G01070.1 | 32.653 | 98 | 61 | 3 | 9 | 104 | 12 | 106 | 5.42e-11 | 58.9 |
Find 40 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATGATTTGTTATCTTTA+TGG | 0.100250 | 1_1:+75989559 | None:intergenic |
| AAATGTGATCATATTATTAT+AGG | 0.226490 | 1_1:+75989112 | None:intergenic |
| TTGTAATTTGTTTACTAGTT+TGG | 0.295248 | 1_1:-75989254 | Msa0044440:three_prime_UTR |
| CTAGCTATATATGCTAAATA+AGG | 0.322395 | 1_1:-75989282 | Msa0044440:exon |
| TGTTTACTAGTTTGGTTTGT+GGG | 0.329596 | 1_1:-75989246 | Msa0044440:three_prime_UTR |
| TCTGTAATTCCTTTACTTGC+TGG | 0.332337 | 1_1:-75989191 | Msa0044440:three_prime_UTR |
| ATCATCTTCACCTTCAGCAT+TGG | 0.417122 | 1_1:-75989438 | Msa0044440:CDS |
| TTGTTTACTAGTTTGGTTTG+TGG | 0.424475 | 1_1:-75989247 | Msa0044440:three_prime_UTR |
| TCATATTATTATAGGACAAC+TGG | 0.437115 | 1_1:+75989120 | None:intergenic |
| TTCAGTGGTGCAGCATTACT+AGG | 0.451042 | 1_1:+75989365 | None:intergenic |
| GTCACCAAGATGGAAGTTCT+TGG | 0.461769 | 1_1:+75990449 | None:intergenic |
| AGAGTCTATAGTCATGGCTT+TGG | 0.467395 | 1_1:-75990601 | Msa0044440:exon |
| CCAATTGCAACATTCACTAC+TGG | 0.482441 | 1_1:-75989590 | Msa0044440:CDS |
| TTCATATGCAGCTGTATACA+AGG | 0.487437 | 1_1:-75990532 | Msa0044440:CDS |
| CCAGTAGTGAATGTTGCAAT+TGG | 0.487702 | 1_1:+75989590 | None:intergenic |
| AGGTTGGTGATTCTGCTGGC+TGG | 0.497516 | 1_1:-75990512 | Msa0044440:CDS |
| TACAAGGTTGGTGATTCTGC+TGG | 0.511253 | 1_1:-75990516 | Msa0044440:CDS |
| ACCATAAAGATAACAAATCA+TGG | 0.515142 | 1_1:-75989560 | Msa0044440:CDS |
| TGTCCTGCTTGACAGTGTCC+AGG | 0.520727 | 1_1:+75989512 | None:intergenic |
| GGCTTTGGTAGAAAGAGCTA+TGG | 0.525531 | 1_1:-75990586 | Msa0044440:CDS |
| AGGAGAAGGTGCAGGTACAT+TGG | 0.525671 | 1_1:+75989385 | None:intergenic |
| GCTGGAACTGTAGCTTCAGC+AGG | 0.528803 | 1_1:+75989410 | None:intergenic |
| GCTACCAAGAACTTCCATCT+TGG | 0.537592 | 1_1:-75990453 | Msa0044440:CDS |
| TACTAATAGTGTCACCAAGA+TGG | 0.545203 | 1_1:+75990439 | None:intergenic |
| TAATTCTATCCAGCAAGTAA+AGG | 0.554771 | 1_1:+75989182 | None:intergenic |
| GCAGGAGAAGCCAATGCTGA+AGG | 0.557674 | 1_1:+75989428 | None:intergenic |
| GTACCTGGACACTGTCAAGC+AGG | 0.560336 | 1_1:-75989515 | Msa0044440:CDS |
| TATGCAGCTGTATACAAGGT+TGG | 0.562762 | 1_1:-75990528 | Msa0044440:CDS |
| GGTGCAGGTACATTGGAAGC+TGG | 0.574590 | 1_1:+75989392 | None:intergenic |
| AATGCTGAAGGTGAAGATGA+TGG | 0.589576 | 1_1:+75989440 | None:intergenic |
| TTTAAAGCAATACATTTCAG+TGG | 0.593570 | 1_1:+75989350 | None:intergenic |
| ATTAACAGCAAGAAATTGCA+TGG | 0.600755 | 1_1:+75989307 | None:intergenic |
| TCTTGCAGAGTCTATAGTCA+TGG | 0.602471 | 1_1:-75990607 | Msa0044440:exon |
| ACACTGTCAAGCAGGACAGA+AGG | 0.613934 | 1_1:-75989507 | Msa0044440:CDS |
| GGTGCAGCATTACTAGGAGA+AGG | 0.618539 | 1_1:+75989371 | None:intergenic |
| TCTGCTGGCTGGACTACACT+TGG | 0.619967 | 1_1:-75990501 | Msa0044440:CDS |
| GAAGGTGAAGATGATGGAGC+AGG | 0.628782 | 1_1:+75989446 | None:intergenic |
| TGCATTGCATGACTTGTACA+TGG | 0.629046 | 1_1:+75989619 | None:intergenic |
| GTGTCACTCGCATCACATTG+TGG | 0.630592 | 1_1:+75989645 | None:intergenic |
| GCATTACTAGGAGAAGGTGC+AGG | 0.642038 | 1_1:+75989377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAAAATAATGTTAATTT+TGG | + | chr1_1:75989540-75989559 | None:intergenic | 10.0% |
| !!! | TTGTAAAATAATGTTAATTT+TGG | + | chr1_1:75989540-75989559 | None:intergenic | 10.0% |
| !! | ATTTACTAATACAAAAAACA+AGG | - | chr1_1:75989195-75989214 | Msa0044440:three_prime_UTR | 15.0% |
| !!! | AACATTATTTTACAATTCTA+TGG | - | chr1_1:75989545-75989564 | Msa0044440:CDS | 15.0% |
| !! | AAATGTGATCATATTATTAT+AGG | + | chr1_1:75990725-75990744 | None:intergenic | 15.0% |
| !! | ATTTACTAATACAAAAAACA+AGG | - | chr1_1:75989195-75989214 | Msa0044440:three_prime_UTR | 15.0% |
| !!! | AACATTATTTTACAATTCTA+TGG | - | chr1_1:75989545-75989564 | Msa0044440:CDS | 15.0% |
| !! | AAATGTGATCATATTATTAT+AGG | + | chr1_1:75990725-75990744 | None:intergenic | 15.0% |
| !!! | TAACATTGACTACAAAAAAT+GGG | - | chr1_1:75989356-75989375 | Msa0044440:CDS | 20.0% |
| !! | TTAAAGCAAAAAACATGAAA+AGG | + | chr1_1:75989621-75989640 | None:intergenic | 20.0% |
| !!! | CAAATTACATAATTAGTCTT+GGG | + | chr1_1:75989690-75989709 | None:intergenic | 20.0% |
| !! | TATATAGTATATCTTTGTCT+TGG | - | chr1_1:75989796-75989815 | Msa0044440:intron | 20.0% |
| !! | TATTTCTTCAAGAAATTAGA+CGG | + | chr1_1:75989822-75989841 | None:intergenic | 20.0% |
| !!! | TTGTAATTTGTTTACTAGTT+TGG | - | chr1_1:75990580-75990599 | Msa0044440:CDS | 20.0% |
| !!! | TAACATTGACTACAAAAAAT+GGG | - | chr1_1:75989356-75989375 | Msa0044440:CDS | 20.0% |
| !! | TTAAAGCAAAAAACATGAAA+AGG | + | chr1_1:75989621-75989640 | None:intergenic | 20.0% |
| !!! | CAAATTACATAATTAGTCTT+GGG | + | chr1_1:75989690-75989709 | None:intergenic | 20.0% |
| !! | TATATAGTATATCTTTGTCT+TGG | - | chr1_1:75989796-75989815 | Msa0044440:intron | 20.0% |
| !! | TATTTCTTCAAGAAATTAGA+CGG | + | chr1_1:75989822-75989841 | None:intergenic | 20.0% |
| !!! | TTGTAATTTGTTTACTAGTT+TGG | - | chr1_1:75990580-75990599 | Msa0044440:CDS | 20.0% |
| !!! | AGTAAATTTCTTTTTTGCTG+AGG | + | chr1_1:75989182-75989201 | None:intergenic | 25.0% |
| ! | TAATACAAAAAACAAGGAGA+AGG | - | chr1_1:75989201-75989220 | Msa0044440:three_prime_UTR | 25.0% |
| !!! | TATGGTTTTGTCTATAATGA+TGG | - | chr1_1:75989266-75989285 | Msa0044440:three_prime_UTR | 25.0% |
| !! | GTAACATTGACTACAAAAAA+TGG | - | chr1_1:75989355-75989374 | Msa0044440:CDS | 25.0% |
| ! | GAACAAATTAAACATGCAAT+TGG | + | chr1_1:75989431-75989450 | None:intergenic | 25.0% |
| !! | TTTTCTAACATTGTCCAATT+TGG | - | chr1_1:75989574-75989593 | Msa0044440:CDS | 25.0% |
| !! | TGAGTTTTTCTATACCAAAT+TGG | + | chr1_1:75989591-75989610 | None:intergenic | 25.0% |
| !! | GCAAATTACATAATTAGTCT+TGG | + | chr1_1:75989691-75989710 | None:intergenic | 25.0% |
| ! | ATGAAAACAAAAAGTTGTGT+AGG | + | chr1_1:75989717-75989736 | None:intergenic | 25.0% |
| !!! | CACAACTTTTTGTTTTCATA+TGG | - | chr1_1:75989718-75989737 | Msa0044440:intron | 25.0% |
| ! | TGATAAAAAATGTTCTAGTC+TGG | - | chr1_1:75989883-75989902 | Msa0044440:intron | 25.0% |
| !!! | AACTCAATTTTGTTTTTGAG+AGG | - | chr1_1:75990094-75990113 | Msa0044440:intron | 25.0% |
| ! | ACCATAAAGATAACAAATCA+TGG | - | chr1_1:75990274-75990293 | Msa0044440:intron | 25.0% |
| !!! | ACCATGATTTGTTATCTTTA+TGG | + | chr1_1:75990278-75990297 | None:intergenic | 25.0% |
| !! | TTTAAAGCAATACATTTCAG+TGG | + | chr1_1:75990487-75990506 | None:intergenic | 25.0% |
| !!! | TATTGCTTTAAAAATGATGC+TGG | - | chr1_1:75990495-75990514 | Msa0044440:CDS | 25.0% |
| ! | CTAGCTATATATGCTAAATA+AGG | - | chr1_1:75990552-75990571 | Msa0044440:CDS | 25.0% |
| ! | AGAAGAAGTAAAAACCAAAA+AGG | + | chr1_1:75990614-75990633 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTACTTCTTCTAT+TGG | - | chr1_1:75990616-75990635 | Msa0044440:five_prime_UTR | 25.0% |
| ! | TCATATTATTATAGGACAAC+TGG | + | chr1_1:75990717-75990736 | None:intergenic | 25.0% |
| !!! | AGTAAATTTCTTTTTTGCTG+AGG | + | chr1_1:75989182-75989201 | None:intergenic | 25.0% |
| ! | TAATACAAAAAACAAGGAGA+AGG | - | chr1_1:75989201-75989220 | Msa0044440:three_prime_UTR | 25.0% |
| !!! | TATGGTTTTGTCTATAATGA+TGG | - | chr1_1:75989266-75989285 | Msa0044440:three_prime_UTR | 25.0% |
| !! | GTAACATTGACTACAAAAAA+TGG | - | chr1_1:75989355-75989374 | Msa0044440:CDS | 25.0% |
| ! | GAACAAATTAAACATGCAAT+TGG | + | chr1_1:75989431-75989450 | None:intergenic | 25.0% |
| !! | TTTTCTAACATTGTCCAATT+TGG | - | chr1_1:75989574-75989593 | Msa0044440:CDS | 25.0% |
| !! | TGAGTTTTTCTATACCAAAT+TGG | + | chr1_1:75989591-75989610 | None:intergenic | 25.0% |
| !! | GCAAATTACATAATTAGTCT+TGG | + | chr1_1:75989691-75989710 | None:intergenic | 25.0% |
| ! | ATGAAAACAAAAAGTTGTGT+AGG | + | chr1_1:75989717-75989736 | None:intergenic | 25.0% |
| !!! | CACAACTTTTTGTTTTCATA+TGG | - | chr1_1:75989718-75989737 | Msa0044440:intron | 25.0% |
| ! | TGATAAAAAATGTTCTAGTC+TGG | - | chr1_1:75989883-75989902 | Msa0044440:intron | 25.0% |
| !!! | AACTCAATTTTGTTTTTGAG+AGG | - | chr1_1:75990094-75990113 | Msa0044440:intron | 25.0% |
| ! | ACCATAAAGATAACAAATCA+TGG | - | chr1_1:75990274-75990293 | Msa0044440:intron | 25.0% |
| !!! | ACCATGATTTGTTATCTTTA+TGG | + | chr1_1:75990278-75990297 | None:intergenic | 25.0% |
| !! | TTTAAAGCAATACATTTCAG+TGG | + | chr1_1:75990487-75990506 | None:intergenic | 25.0% |
| !!! | TATTGCTTTAAAAATGATGC+TGG | - | chr1_1:75990495-75990514 | Msa0044440:CDS | 25.0% |
| ! | CTAGCTATATATGCTAAATA+AGG | - | chr1_1:75990552-75990571 | Msa0044440:CDS | 25.0% |
| ! | AGAAGAAGTAAAAACCAAAA+AGG | + | chr1_1:75990614-75990633 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTACTTCTTCTAT+TGG | - | chr1_1:75990616-75990635 | Msa0044440:five_prime_UTR | 25.0% |
| ! | TCATATTATTATAGGACAAC+TGG | + | chr1_1:75990717-75990736 | None:intergenic | 25.0% |
| TTAAACATGCAATTGGAGAA+AGG | + | chr1_1:75989424-75989443 | None:intergenic | 30.0% | |
| !!! | CACATTTTCTGAAGTTTGAA+AGG | - | chr1_1:75989493-75989512 | Msa0044440:CDS | 30.0% |
| ATTGGACAATGTTAGAAAAG+AGG | + | chr1_1:75989573-75989592 | None:intergenic | 30.0% | |
| AAGCAAAAAACATGAAAAGG+AGG | + | chr1_1:75989618-75989637 | None:intergenic | 30.0% | |
| CATGAATATGAATCCGAATT+CGG | + | chr1_1:75989911-75989930 | None:intergenic | 30.0% | |
| !!! | TAAAAATGATGCTGGCTTTT+TGG | - | chr1_1:75990503-75990522 | Msa0044440:CDS | 30.0% |
| !!! | AAAAATGATGCTGGCTTTTT+GGG | - | chr1_1:75990504-75990523 | Msa0044440:CDS | 30.0% |
| ATTAACAGCAAGAAATTGCA+TGG | + | chr1_1:75990530-75990549 | None:intergenic | 30.0% | |
| !! | TTGTTTACTAGTTTGGTTTG+TGG | - | chr1_1:75990587-75990606 | Msa0044440:CDS | 30.0% |
| !! | TGTTTACTAGTTTGGTTTGT+GGG | - | chr1_1:75990588-75990607 | Msa0044440:CDS | 30.0% |
| TAATTCTATCCAGCAAGTAA+AGG | + | chr1_1:75990655-75990674 | None:intergenic | 30.0% | |
| TTAAACATGCAATTGGAGAA+AGG | + | chr1_1:75989424-75989443 | None:intergenic | 30.0% | |
| !!! | CACATTTTCTGAAGTTTGAA+AGG | - | chr1_1:75989493-75989512 | Msa0044440:CDS | 30.0% |
| ATTGGACAATGTTAGAAAAG+AGG | + | chr1_1:75989573-75989592 | None:intergenic | 30.0% | |
| AAGCAAAAAACATGAAAAGG+AGG | + | chr1_1:75989618-75989637 | None:intergenic | 30.0% | |
| CATGAATATGAATCCGAATT+CGG | + | chr1_1:75989911-75989930 | None:intergenic | 30.0% | |
| !!! | TAAAAATGATGCTGGCTTTT+TGG | - | chr1_1:75990503-75990522 | Msa0044440:CDS | 30.0% |
| !!! | AAAAATGATGCTGGCTTTTT+GGG | - | chr1_1:75990504-75990523 | Msa0044440:CDS | 30.0% |
| ATTAACAGCAAGAAATTGCA+TGG | + | chr1_1:75990530-75990549 | None:intergenic | 30.0% | |
| !! | TTGTTTACTAGTTTGGTTTG+TGG | - | chr1_1:75990587-75990606 | Msa0044440:CDS | 30.0% |
| !! | TGTTTACTAGTTTGGTTTGT+GGG | - | chr1_1:75990588-75990607 | Msa0044440:CDS | 30.0% |
| TAATTCTATCCAGCAAGTAA+AGG | + | chr1_1:75990655-75990674 | None:intergenic | 30.0% | |
| !!! | TTTCTTTTTTGCTGAGGTTG+AGG | + | chr1_1:75989176-75989195 | None:intergenic | 35.0% |
| TTCATATGCAGCTGTATACA+AGG | - | chr1_1:75989302-75989321 | Msa0044440:CDS | 35.0% | |
| TACTAATAGTGTCACCAAGA+TGG | + | chr1_1:75989398-75989417 | None:intergenic | 35.0% | |
| AAGTTTGAAAGGTCCTTTCA+AGG | - | chr1_1:75989504-75989523 | Msa0044440:CDS | 35.0% | |
| AGTTTGAAAGGTCCTTTCAA+GGG | - | chr1_1:75989505-75989524 | Msa0044440:CDS | 35.0% | |
| AAAGGTAATGCAAGTGAAAG+TGG | + | chr1_1:75989964-75989983 | None:intergenic | 35.0% | |
| ! | TGCATTACCTTTTTGTTCTG+TGG | - | chr1_1:75989972-75989991 | Msa0044440:intron | 35.0% |
| ! | AACCATGCTCTTGATGATTT+GGG | + | chr1_1:75990048-75990067 | None:intergenic | 35.0% |
| ! | AAACCATGCTCTTGATGATT+TGG | + | chr1_1:75990049-75990068 | None:intergenic | 35.0% |
| TCTGTAATTCCTTTACTTGC+TGG | - | chr1_1:75990643-75990662 | Msa0044440:five_prime_UTR | 35.0% | |
| !!! | TTTCTTTTTTGCTGAGGTTG+AGG | + | chr1_1:75989176-75989195 | None:intergenic | 35.0% |
| TTCATATGCAGCTGTATACA+AGG | - | chr1_1:75989302-75989321 | Msa0044440:CDS | 35.0% | |
| TACTAATAGTGTCACCAAGA+TGG | + | chr1_1:75989398-75989417 | None:intergenic | 35.0% | |
| AAGTTTGAAAGGTCCTTTCA+AGG | - | chr1_1:75989504-75989523 | Msa0044440:CDS | 35.0% | |
| AGTTTGAAAGGTCCTTTCAA+GGG | - | chr1_1:75989505-75989524 | Msa0044440:CDS | 35.0% | |
| AAAGGTAATGCAAGTGAAAG+TGG | + | chr1_1:75989964-75989983 | None:intergenic | 35.0% | |
| ! | TGCATTACCTTTTTGTTCTG+TGG | - | chr1_1:75989972-75989991 | Msa0044440:intron | 35.0% |
| ! | AACCATGCTCTTGATGATTT+GGG | + | chr1_1:75990048-75990067 | None:intergenic | 35.0% |
| ! | AAACCATGCTCTTGATGATT+TGG | + | chr1_1:75990049-75990068 | None:intergenic | 35.0% |
| TCTGTAATTCCTTTACTTGC+TGG | - | chr1_1:75990643-75990662 | Msa0044440:five_prime_UTR | 35.0% | |
| TCTTGCAGAGTCTATAGTCA+TGG | - | chr1_1:75989227-75989246 | Msa0044440:three_prime_UTR | 40.0% | |
| AGAGTCTATAGTCATGGCTT+TGG | - | chr1_1:75989233-75989252 | Msa0044440:three_prime_UTR | 40.0% | |
| TATGCAGCTGTATACAAGGT+TGG | - | chr1_1:75989306-75989325 | Msa0044440:CDS | 40.0% | |
| CAAGAAAGATAGTGCAACAG+TGG | + | chr1_1:75989651-75989670 | None:intergenic | 40.0% | |
| CACTGTTGCACTATCTTTCT+TGG | - | chr1_1:75989649-75989668 | Msa0044440:CDS | 40.0% | |
| TTGCACTATCTTTCTTGGCA+TGG | - | chr1_1:75989654-75989673 | Msa0044440:CDS | 40.0% | |
| TAGTCTCGAGTTCGATTGAA+AGG | - | chr1_1:75989849-75989868 | Msa0044440:intron | 40.0% | |
| TTCTAGTCTGGATCCGAATT+CGG | - | chr1_1:75989895-75989914 | Msa0044440:intron | 40.0% | |
| GTAATGCAAGTGAAAGTGGT+GGG | + | chr1_1:75989960-75989979 | None:intergenic | 40.0% | |
| ! | CAAAGCACCACAGAACAAAA+AGG | + | chr1_1:75989982-75990001 | None:intergenic | 40.0% |
| ! | TGCATTGCATGACTTGTACA+TGG | + | chr1_1:75990218-75990237 | None:intergenic | 40.0% |
| CCAGTAGTGAATGTTGCAAT+TGG | + | chr1_1:75990247-75990266 | None:intergenic | 40.0% | |
| CCAATTGCAACATTCACTAC+TGG | - | chr1_1:75990244-75990263 | Msa0044440:intron | 40.0% | |
| ! | GGTCATCACTTCTTCTTTTG+TGG | - | chr1_1:75990295-75990314 | Msa0044440:intron | 40.0% |
| ! | TTCTTCTTTTGTGGTGTACC+TGG | - | chr1_1:75990304-75990323 | Msa0044440:intron | 40.0% |
| AATGCTGAAGGTGAAGATGA+TGG | + | chr1_1:75990397-75990416 | None:intergenic | 40.0% | |
| ATCATCTTCACCTTCAGCAT+TGG | - | chr1_1:75990396-75990415 | Msa0044440:intron | 40.0% | |
| TCTTGCAGAGTCTATAGTCA+TGG | - | chr1_1:75989227-75989246 | Msa0044440:three_prime_UTR | 40.0% | |
| AGAGTCTATAGTCATGGCTT+TGG | - | chr1_1:75989233-75989252 | Msa0044440:three_prime_UTR | 40.0% | |
| TATGCAGCTGTATACAAGGT+TGG | - | chr1_1:75989306-75989325 | Msa0044440:CDS | 40.0% | |
| CAAGAAAGATAGTGCAACAG+TGG | + | chr1_1:75989651-75989670 | None:intergenic | 40.0% | |
| CACTGTTGCACTATCTTTCT+TGG | - | chr1_1:75989649-75989668 | Msa0044440:CDS | 40.0% | |
| TTGCACTATCTTTCTTGGCA+TGG | - | chr1_1:75989654-75989673 | Msa0044440:CDS | 40.0% | |
| TAGTCTCGAGTTCGATTGAA+AGG | - | chr1_1:75989849-75989868 | Msa0044440:intron | 40.0% | |
| TTCTAGTCTGGATCCGAATT+CGG | - | chr1_1:75989895-75989914 | Msa0044440:intron | 40.0% | |
| GTAATGCAAGTGAAAGTGGT+GGG | + | chr1_1:75989960-75989979 | None:intergenic | 40.0% | |
| ! | CAAAGCACCACAGAACAAAA+AGG | + | chr1_1:75989982-75990001 | None:intergenic | 40.0% |
| ! | TGCATTGCATGACTTGTACA+TGG | + | chr1_1:75990218-75990237 | None:intergenic | 40.0% |
| CCAGTAGTGAATGTTGCAAT+TGG | + | chr1_1:75990247-75990266 | None:intergenic | 40.0% | |
| CCAATTGCAACATTCACTAC+TGG | - | chr1_1:75990244-75990263 | Msa0044440:intron | 40.0% | |
| ! | GGTCATCACTTCTTCTTTTG+TGG | - | chr1_1:75990295-75990314 | Msa0044440:intron | 40.0% |
| ! | TTCTTCTTTTGTGGTGTACC+TGG | - | chr1_1:75990304-75990323 | Msa0044440:intron | 40.0% |
| AATGCTGAAGGTGAAGATGA+TGG | + | chr1_1:75990397-75990416 | None:intergenic | 40.0% | |
| ATCATCTTCACCTTCAGCAT+TGG | - | chr1_1:75990396-75990415 | Msa0044440:intron | 40.0% | |
| ! | GGCTTTGGTAGAAAGAGCTA+TGG | - | chr1_1:75989248-75989267 | Msa0044440:three_prime_UTR | 45.0% |
| !! | TACAAGGTTGGTGATTCTGC+TGG | - | chr1_1:75989318-75989337 | Msa0044440:CDS | 45.0% |
| GCTACCAAGAACTTCCATCT+TGG | - | chr1_1:75989381-75989400 | Msa0044440:CDS | 45.0% | |
| GTCACCAAGATGGAAGTTCT+TGG | + | chr1_1:75989388-75989407 | None:intergenic | 45.0% | |
| TGGTTGTCTTCTCCCTTGAA+AGG | + | chr1_1:75989520-75989539 | None:intergenic | 45.0% | |
| GGTAATGCAAGTGAAAGTGG+TGG | + | chr1_1:75989961-75989980 | None:intergenic | 45.0% | |
| CATGCAATGACTTTGTCGTG+TGG | - | chr1_1:75990021-75990040 | Msa0044440:intron | 45.0% | |
| GTCCCAAATCATCAAGAGCA+TGG | - | chr1_1:75990043-75990062 | Msa0044440:intron | 45.0% | |
| TTCAGTGGTGCAGCATTACT+AGG | + | chr1_1:75990472-75990491 | None:intergenic | 45.0% | |
| !!! | GTTTGGTTTGTGGGCCTTTT+TGG | - | chr1_1:75990597-75990616 | Msa0044440:exon | 45.0% |
| ! | GGCTTTGGTAGAAAGAGCTA+TGG | - | chr1_1:75989248-75989267 | Msa0044440:three_prime_UTR | 45.0% |
| !! | TACAAGGTTGGTGATTCTGC+TGG | - | chr1_1:75989318-75989337 | Msa0044440:CDS | 45.0% |
| GCTACCAAGAACTTCCATCT+TGG | - | chr1_1:75989381-75989400 | Msa0044440:CDS | 45.0% | |
| GTCACCAAGATGGAAGTTCT+TGG | + | chr1_1:75989388-75989407 | None:intergenic | 45.0% | |
| TGGTTGTCTTCTCCCTTGAA+AGG | + | chr1_1:75989520-75989539 | None:intergenic | 45.0% | |
| GGTAATGCAAGTGAAAGTGG+TGG | + | chr1_1:75989961-75989980 | None:intergenic | 45.0% | |
| CATGCAATGACTTTGTCGTG+TGG | - | chr1_1:75990021-75990040 | Msa0044440:intron | 45.0% | |
| GTCCCAAATCATCAAGAGCA+TGG | - | chr1_1:75990043-75990062 | Msa0044440:intron | 45.0% | |
| TTCAGTGGTGCAGCATTACT+AGG | + | chr1_1:75990472-75990491 | None:intergenic | 45.0% | |
| !!! | GTTTGGTTTGTGGGCCTTTT+TGG | - | chr1_1:75990597-75990616 | Msa0044440:exon | 45.0% |
| ! | GTGTCACTCGCATCACATTG+TGG | + | chr1_1:75990192-75990211 | None:intergenic | 50.0% |
| ACACTGTCAAGCAGGACAGA+AGG | - | chr1_1:75990327-75990346 | Msa0044440:intron | 50.0% | |
| !! | GAAGGTGAAGATGATGGAGC+AGG | + | chr1_1:75990391-75990410 | None:intergenic | 50.0% |
| ! | AGGAGAAGGTGCAGGTACAT+TGG | + | chr1_1:75990452-75990471 | None:intergenic | 50.0% |
| ! | GCATTACTAGGAGAAGGTGC+AGG | + | chr1_1:75990460-75990479 | None:intergenic | 50.0% |
| GGTGCAGCATTACTAGGAGA+AGG | + | chr1_1:75990466-75990485 | None:intergenic | 50.0% | |
| ! | GTGTCACTCGCATCACATTG+TGG | + | chr1_1:75990192-75990211 | None:intergenic | 50.0% |
| ACACTGTCAAGCAGGACAGA+AGG | - | chr1_1:75990327-75990346 | Msa0044440:intron | 50.0% | |
| !! | GAAGGTGAAGATGATGGAGC+AGG | + | chr1_1:75990391-75990410 | None:intergenic | 50.0% |
| ! | AGGAGAAGGTGCAGGTACAT+TGG | + | chr1_1:75990452-75990471 | None:intergenic | 50.0% |
| ! | GCATTACTAGGAGAAGGTGC+AGG | + | chr1_1:75990460-75990479 | None:intergenic | 50.0% |
| GGTGCAGCATTACTAGGAGA+AGG | + | chr1_1:75990466-75990485 | None:intergenic | 50.0% | |
| !! | AGGTTGGTGATTCTGCTGGC+TGG | - | chr1_1:75989322-75989341 | Msa0044440:CDS | 55.0% |
| ! | TCTGCTGGCTGGACTACACT+TGG | - | chr1_1:75989333-75989352 | Msa0044440:CDS | 55.0% |
| GTACCTGGACACTGTCAAGC+AGG | - | chr1_1:75990319-75990338 | Msa0044440:intron | 55.0% | |
| TGTCCTGCTTGACAGTGTCC+AGG | + | chr1_1:75990325-75990344 | None:intergenic | 55.0% | |
| GCAGGAGAAGCCAATGCTGA+AGG | + | chr1_1:75990409-75990428 | None:intergenic | 55.0% | |
| GCTGGAACTGTAGCTTCAGC+AGG | + | chr1_1:75990427-75990446 | None:intergenic | 55.0% | |
| GGTGCAGGTACATTGGAAGC+TGG | + | chr1_1:75990445-75990464 | None:intergenic | 55.0% | |
| !! | AGGTTGGTGATTCTGCTGGC+TGG | - | chr1_1:75989322-75989341 | Msa0044440:CDS | 55.0% |
| ! | TCTGCTGGCTGGACTACACT+TGG | - | chr1_1:75989333-75989352 | Msa0044440:CDS | 55.0% |
| GTACCTGGACACTGTCAAGC+AGG | - | chr1_1:75990319-75990338 | Msa0044440:intron | 55.0% | |
| TGTCCTGCTTGACAGTGTCC+AGG | + | chr1_1:75990325-75990344 | None:intergenic | 55.0% | |
| GCAGGAGAAGCCAATGCTGA+AGG | + | chr1_1:75990409-75990428 | None:intergenic | 55.0% | |
| GCTGGAACTGTAGCTTCAGC+AGG | + | chr1_1:75990427-75990446 | None:intergenic | 55.0% | |
| GGTGCAGGTACATTGGAAGC+TGG | + | chr1_1:75990445-75990464 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 75989104 | 75990752 | 75989104 | ID=Msa0044440;Name=Msa0044440 |
| chr1_1 | mRNA | 75989104 | 75990752 | 75989104 | ID=Msa0044440-mRNA-1;Parent=Msa0044440;Name=Msa0044440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=142|1|1|1|1|1|2|197|185 |
| chr1_1 | exon | 75989104 | 75989689 | 75989104 | ID=Msa0044440-mRNA-1:exon:25746;Parent=Msa0044440-mRNA-1 |
| chr1_1 | exon | 75990442 | 75990752 | 75990442 | ID=Msa0044440-mRNA-1:exon:25745;Parent=Msa0044440-mRNA-1 |
| chr1_1 | five_prime_UTR | 75990611 | 75990752 | 75990611 | ID=Msa0044440-mRNA-1:five_prime_utr;Parent=Msa0044440-mRNA-1 |
| chr1_1 | CDS | 75990442 | 75990610 | 75990442 | ID=Msa0044440-mRNA-1:cds;Parent=Msa0044440-mRNA-1 |
| chr1_1 | CDS | 75989301 | 75989689 | 75989301 | ID=Msa0044440-mRNA-1:cds;Parent=Msa0044440-mRNA-1 |
| chr1_1 | three_prime_UTR | 75989104 | 75989300 | 75989104 | ID=Msa0044440-mRNA-1:three_prime_utr;Parent=Msa0044440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
