Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254340 | XP_013464521.1 | 98.980 | 294 | 3 | 0 | 1 | 294 | 1 | 294 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254340 | sp|Q9SYM2|BBX22_ARATH | 52.797 | 286 | 113 | 4 | 1 | 273 | 1 | 277 | 8.04e-93 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254340 | A0A072VAB5 | 98.980 | 294 | 3 | 0 | 1 | 294 | 1 | 294 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0254340 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0254340 | 0.853609 | 2.134466e-61 | -8.615850e-47 |
| Msa0213980 | Msa0254340 | 0.938255 | 9.107393e-99 | -8.615850e-47 |
| Msa0254340 | Msa0332410 | 0.935362 | 9.550509e-97 | -8.615850e-47 |
| Msa0254340 | Msa0376700 | 0.820856 | 5.498610e-53 | -8.615850e-47 |
| Msa0254340 | Msa0425830 | 0.800209 | 1.604367e-48 | -8.615850e-47 |
| Msa0254340 | Msa0574910 | 0.846223 | 2.485718e-59 | -8.615850e-47 |
| Msa0254340 | Msa0930760 | 0.847958 | 8.318180e-60 | -8.615850e-47 |
| Msa0254340 | Msa0959480 | 0.801951 | 7.064693e-49 | -8.615850e-47 |
| Msa0254340 | Msa1039820 | 0.854963 | 8.673061e-62 | -8.615850e-47 |
| Msa0254340 | Msa1128260 | 0.818489 | 1.908600e-52 | -8.615850e-47 |
| Msa0254340 | Msa1411850 | 0.821581 | 3.741049e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254340 | MtrunA17_Chr2g0314671 | 98.980 | 294 | 3 | 0 | 1 | 294 | 1 | 294 | 0.0 | 612 |
| Msa0254340 | MtrunA17_Chr4g0033641 | 60.550 | 109 | 43 | 0 | 1 | 109 | 1 | 109 | 4.32e-43 | 147 |
| Msa0254340 | MtrunA17_Chr2g0329511 | 40.104 | 192 | 80 | 3 | 1 | 192 | 1 | 157 | 1.86e-42 | 146 |
| Msa0254340 | MtrunA17_Chr3g0145061 | 50.685 | 146 | 71 | 1 | 1 | 145 | 1 | 146 | 5.18e-41 | 142 |
| Msa0254340 | MtrunA17_Chr4g0035651 | 54.717 | 106 | 47 | 1 | 1 | 105 | 1 | 106 | 6.85e-36 | 128 |
| Msa0254340 | MtrunA17_Chr3g0142221 | 54.717 | 106 | 46 | 1 | 1 | 104 | 1 | 106 | 8.03e-36 | 128 |
| Msa0254340 | MtrunA17_Chr1g0155811 | 54.286 | 105 | 47 | 1 | 1 | 104 | 1 | 105 | 1.09e-35 | 129 |
| Msa0254340 | MtrunA17_Chr5g0405151 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.17e-26 | 103 |
| Msa0254340 | MtrunA17_Chr1g0150471 | 41.667 | 96 | 47 | 1 | 5 | 100 | 6 | 92 | 7.73e-19 | 85.1 |
| Msa0254340 | MtrunA17_Chr3g0136701 | 44.792 | 96 | 44 | 1 | 5 | 100 | 6 | 92 | 1.25e-18 | 84.0 |
| Msa0254340 | MtrunA17_Chr7g0220721 | 43.478 | 92 | 43 | 1 | 5 | 96 | 26 | 108 | 1.39e-17 | 82.0 |
| Msa0254340 | MtrunA17_Chr4g0072871 | 38.043 | 92 | 48 | 1 | 5 | 96 | 22 | 104 | 1.31e-14 | 73.6 |
| Msa0254340 | MtrunA17_Chr5g0429341 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 2.29e-11 | 63.9 |
| Msa0254340 | MtrunA17_Chr2g0322941 | 29.747 | 158 | 89 | 4 | 1 | 147 | 40 | 186 | 7.36e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254340 | AT1G78600.1 | 52.797 | 286 | 113 | 4 | 1 | 273 | 1 | 277 | 8.18e-94 | 280 |
| Msa0254340 | AT1G78600.2 | 48.693 | 306 | 115 | 5 | 1 | 273 | 1 | 297 | 1.79e-91 | 274 |
| Msa0254340 | AT1G06040.2 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 1.84e-46 | 154 |
| Msa0254340 | AT1G06040.1 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 7.06e-46 | 155 |
| Msa0254340 | AT2G31380.1 | 61.468 | 109 | 42 | 0 | 1 | 109 | 1 | 109 | 2.42e-42 | 146 |
| Msa0254340 | AT4G10240.1 | 49.701 | 167 | 62 | 5 | 1 | 161 | 1 | 151 | 8.73e-41 | 139 |
| Msa0254340 | AT1G75540.1 | 40.090 | 222 | 114 | 6 | 1 | 211 | 1 | 214 | 5.15e-36 | 132 |
| Msa0254340 | AT4G39070.1 | 49.640 | 139 | 68 | 2 | 1 | 138 | 1 | 138 | 1.94e-35 | 128 |
| Msa0254340 | AT2G21320.1 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.67e-26 | 102 |
| Msa0254340 | AT4G38960.1 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 3.24e-26 | 102 |
| Msa0254340 | AT4G38960.6 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 3.24e-26 | 102 |
| Msa0254340 | AT5G15850.1 | 42.857 | 98 | 47 | 1 | 5 | 102 | 12 | 100 | 3.13e-18 | 84.0 |
| Msa0254340 | AT2G24790.1 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 9.87e-18 | 82.0 |
| Msa0254340 | AT5G24930.1 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.03e-17 | 82.8 |
| Msa0254340 | AT4G38960.3 | 30.939 | 181 | 78 | 4 | 1 | 138 | 1 | 177 | 1.29e-17 | 80.5 |
| Msa0254340 | AT3G02380.1 | 43.011 | 93 | 44 | 1 | 5 | 97 | 16 | 99 | 2.00e-17 | 81.6 |
| Msa0254340 | AT2G24790.2 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 2.93e-17 | 79.3 |
| Msa0254340 | AT5G15840.1 | 37.755 | 98 | 52 | 1 | 5 | 102 | 20 | 108 | 5.43e-16 | 77.8 |
| Msa0254340 | AT5G15840.2 | 39.785 | 93 | 47 | 1 | 5 | 97 | 20 | 103 | 1.15e-15 | 75.9 |
| Msa0254340 | AT2G47890.1 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.08e-12 | 67.8 |
| Msa0254340 | AT2G47890.3 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.14e-12 | 67.4 |
| Msa0254340 | AT2G47890.2 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 3.24e-12 | 65.5 |
| Msa0254340 | AT5G57660.1 | 34.783 | 92 | 47 | 2 | 5 | 96 | 22 | 100 | 3.09e-11 | 63.5 |
| Msa0254340 | AT4G38960.5 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 6.14e-11 | 60.1 |
| Msa0254340 | AT4G38960.2 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 6.14e-11 | 60.1 |
Find 63 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGAAAATTTGAAATT+TGG | 0.187546 | 2_2:+47281694 | Msa0254340:five_prime_UTR |
| TCTTCATTGGATCTTAAAAT+AGG | 0.258790 | 2_2:-47284190 | None:intergenic |
| CCACCAGCCAAGGTGTCTTA+TGG | 0.275750 | 2_2:+47283325 | Msa0254340:CDS |
| CCTACCGAAGCCGGAGGATT+TGG | 0.277213 | 2_2:+47283295 | Msa0254340:CDS |
| GTATTCCATTTCCTCTTCAT+TGG | 0.304492 | 2_2:-47284203 | None:intergenic |
| AATTCGTTGAAGACAGATTC+TGG | 0.304552 | 2_2:+47283187 | Msa0254340:CDS |
| CGATAATGCTCTATTTGTTC+CGG | 0.320546 | 2_2:+47284333 | Msa0254340:CDS |
| CTACAGCTTCGGGGCTAAAC+TGG | 0.326015 | 2_2:+47284287 | Msa0254340:CDS |
| TACCATGATCAGTAGCTTCT+AGG | 0.347736 | 2_2:-47283156 | None:intergenic |
| CCATCACCACCTACAGCTTC+GGG | 0.354633 | 2_2:+47284277 | Msa0254340:CDS |
| CCCATCACCACCTACAGCTT+CGG | 0.391074 | 2_2:+47284276 | Msa0254340:CDS |
| AAGATCCAATGAAGAGGAAA+TGG | 0.393956 | 2_2:+47284198 | Msa0254340:CDS |
| GGAACTGTCCAAGACGAATC+TGG | 0.395347 | 2_2:-47284247 | None:intergenic |
| ATCTGTCTTCAACGAATTTG+AGG | 0.404754 | 2_2:-47283182 | None:intergenic |
| TGATGAAGCTGCTTTGTGTT+GGG | 0.412693 | 2_2:+47281793 | Msa0254340:CDS |
| ACCTGACAAATATCACATTT+AGG | 0.415653 | 2_2:-47281899 | None:intergenic |
| ATCTCCAAATCCTCCGGCTT+CGG | 0.419987 | 2_2:-47283299 | None:intergenic |
| ATCTTCTTCTGTCTCGAGAA+AGG | 0.428233 | 2_2:+47283231 | Msa0254340:CDS |
| GCTCTATTTGTTCCGGACAT+AGG | 0.432303 | 2_2:+47284340 | Msa0254340:CDS |
| TAAATCTTTCAGGAAGCATT+CGG | 0.445968 | 2_2:+47283013 | Msa0254340:intron |
| GCCTAAATGTGATATTTGTC+AGG | 0.459129 | 2_2:+47281898 | Msa0254340:CDS |
| CTGATGAAGCTGCTTTGTGT+TGG | 0.463397 | 2_2:+47281792 | Msa0254340:CDS |
| CCCGAAGCTGTAGGTGGTGA+TGG | 0.475557 | 2_2:-47284277 | None:intergenic |
| CACTGCAAATGCATTTGTCT+CGG | 0.482317 | 2_2:+47283096 | Msa0254340:CDS |
| CCAAATTAATGATGATTTCG+CGG | 0.484903 | 2_2:-47284409 | None:intergenic |
| TATGGTGGTGGTTCTAACTC+TGG | 0.487845 | 2_2:+47283343 | Msa0254340:CDS |
| GAAATGTTGCCTACCGAAGC+CGG | 0.489819 | 2_2:+47283286 | Msa0254340:CDS |
| TGGATGGATCATCAAATTCA+AGG | 0.498918 | 2_2:+47283434 | Msa0254340:CDS |
| CAGTCAGAATTATAACTACA+TGG | 0.503150 | 2_2:+47283414 | Msa0254340:CDS |
| GCCAAGGTGTCTTATGGTGG+TGG | 0.508324 | 2_2:+47283331 | Msa0254340:CDS |
| CCACCATAAGACACCTTGGC+TGG | 0.515474 | 2_2:-47283328 | None:intergenic |
| TGGAAAATCTCCAAATCCTC+CGG | 0.517904 | 2_2:-47283305 | None:intergenic |
| CAGAATTATAACTACATGGA+TGG | 0.518101 | 2_2:+47283418 | Msa0254340:CDS |
| GGGAAAATTGAAACTTGAAG+TGG | 0.523387 | 2_2:+47281668 | None:intergenic |
| ACCGTGTTCCAGATTCGTCT+TGG | 0.527866 | 2_2:+47284239 | Msa0254340:CDS |
| GGAAAATTGAAACTTGAAGT+GGG | 0.530897 | 2_2:+47281669 | Msa0254340:five_prime_UTR |
| ACTGCAAATGCATTTGTCTC+GGG | 0.534296 | 2_2:+47283097 | Msa0254340:CDS |
| TCATTGTACTCAGATGATTG+AGG | 0.549321 | 2_2:-47283265 | None:intergenic |
| TGAGAAGAAGAAGCAGAAAG+AGG | 0.549965 | 2_2:-47281872 | None:intergenic |
| CTTCTCACCGGTGTAAAAGT+CGG | 0.551046 | 2_2:+47283133 | Msa0254340:CDS |
| GGCCTAGAAGCTACTGATCA+TGG | 0.554246 | 2_2:+47283154 | Msa0254340:CDS |
| CCGAAGCTGTAGGTGGTGAT+GGG | 0.554827 | 2_2:-47284276 | None:intergenic |
| AATGGAATACGACGACTACA+TGG | 0.559471 | 2_2:+47284216 | Msa0254340:CDS |
| CAGTTTAGCCCCGAAGCTGT+AGG | 0.563024 | 2_2:-47284286 | None:intergenic |
| CATCAAAGGTTTCTTCTCAC+CGG | 0.568029 | 2_2:+47283121 | Msa0254340:CDS |
| ATGCTAGTAAAGCCTATGTC+CGG | 0.569585 | 2_2:-47284352 | None:intergenic |
| CCAGCCAAGGTGTCTTATGG+TGG | 0.576805 | 2_2:+47283328 | Msa0254340:CDS |
| CATTTGTCTCGGGACATCAA+AGG | 0.579671 | 2_2:+47283107 | Msa0254340:CDS |
| CCAAATCCTCCGGCTTCGGT+AGG | 0.580489 | 2_2:-47283295 | None:intergenic |
| ACCACCACCATAAGACACCT+TGG | 0.592536 | 2_2:-47283332 | None:intergenic |
| TTGTGAAGGTGCTGAAGCTA+AGG | 0.593143 | 2_2:+47281757 | Msa0254340:CDS |
| CCATAAGACACCTTGGCTGG+TGG | 0.594137 | 2_2:-47283325 | None:intergenic |
| GGATGGATCATCAAATTCAA+GGG | 0.601507 | 2_2:+47283435 | Msa0254340:CDS |
| CATTATCGAATGAATACCGA+GGG | 0.607602 | 2_2:-47284318 | None:intergenic |
| ATTCAGTGTAATGTTTGTGA+AGG | 0.627076 | 2_2:+47281743 | Msa0254340:CDS |
| TTTAGCCCCGAAGCTGTAGG+TGG | 0.663191 | 2_2:-47284283 | None:intergenic |
| TCCAAGACGAATCTGGAACA+CGG | 0.671574 | 2_2:-47284240 | None:intergenic |
| GTAGGTGGTGATGGGATCTG+AGG | 0.674067 | 2_2:-47284268 | None:intergenic |
| CATCACCACCTACAGCTTCG+GGG | 0.682711 | 2_2:+47284278 | Msa0254340:CDS |
| GAGTTTATGCAGGCTGACAG+TGG | 0.687400 | 2_2:+47284145 | Msa0254340:intron |
| GCATTATCGAATGAATACCG+AGG | 0.703310 | 2_2:-47284319 | None:intergenic |
| ATGTTGCCTACCGAAGCCGG+AGG | 0.732134 | 2_2:+47283289 | Msa0254340:CDS |
| ACTCTGGAAACATGTCACAG+TGG | 0.763112 | 2_2:+47283359 | Msa0254340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTTTTTATTTGATATA+AGG | + | chr2_2:47281950-47281969 | Msa0254340:intron | 10.0% |
| !!! | TTTTTATTGATTTATTTGAA+TGG | + | chr2_2:47281990-47282009 | Msa0254340:intron | 10.0% |
| !! | AGTTCAAAAATATAAATAAA+AGG | - | chr2_2:47282239-47282258 | None:intergenic | 10.0% |
| !!! | TTTTTAATATTTATTTGGAG+TGG | + | chr2_2:47282017-47282036 | Msa0254340:intron | 15.0% |
| !!! | TATTGATACTTTACAATTTT+AGG | + | chr2_2:47282164-47282183 | Msa0254340:intron | 15.0% |
| !! | CTAAAACAATTAAAAACTAA+AGG | - | chr2_2:47282204-47282223 | None:intergenic | 15.0% |
| !!! | TTTTTAATTGTTTTAGAAAG+AGG | + | chr2_2:47282208-47282227 | Msa0254340:intron | 15.0% |
| !!! | TTTTAATTGTTTTAGAAAGA+GGG | + | chr2_2:47282209-47282228 | Msa0254340:intron | 15.0% |
| !! | TTAGAAACAACTAAAATATT+TGG | + | chr2_2:47282332-47282351 | Msa0254340:intron | 15.0% |
| !!! | TGAAATCTATAATTTTGTAT+AGG | + | chr2_2:47282376-47282395 | Msa0254340:intron | 15.0% |
| !!! | GAAATCTATAATTTTGTATA+GGG | + | chr2_2:47282377-47282396 | Msa0254340:intron | 15.0% |
| !! | TCATAAAATCTTATCATTTA+AGG | + | chr2_2:47282483-47282502 | Msa0254340:intron | 15.0% |
| !! | CAAATAGAAAAAAAAATTGA+GGG | - | chr2_2:47283485-47283504 | None:intergenic | 15.0% |
| !!! | TTGCTTGAAAATTTGAAATT+TGG | + | chr2_2:47281694-47281713 | Msa0254340:five_prime_UTR | 20.0% |
| !!! | TTTTATTTGATATAAGGTTG+TGG | + | chr2_2:47281956-47281975 | Msa0254340:intron | 20.0% |
| !! | TTCATGAAAAAGTAAAAGTT+TGG | + | chr2_2:47282045-47282064 | Msa0254340:intron | 20.0% |
| !!! | TTTAATTGTTTTAGAAAGAG+GGG | + | chr2_2:47282210-47282229 | Msa0254340:intron | 20.0% |
| !!! | TGAAATATTTGACTTTTGAA+AGG | - | chr2_2:47282435-47282454 | None:intergenic | 20.0% |
| !! | TATGAAAAATCGTATATACA+AGG | - | chr2_2:47282468-47282487 | None:intergenic | 20.0% |
| !!! | TTGGTAATATTTTGAGAAAA+TGG | + | chr2_2:47282754-47282773 | Msa0254340:intron | 20.0% |
| !!! | TTGTGTTATTTAAATCTTTC+AGG | + | chr2_2:47283003-47283022 | Msa0254340:intron | 20.0% |
| !! | CCAAATAGAAAAAAAAATTG+AGG | - | chr2_2:47283486-47283505 | None:intergenic | 20.0% |
| !!! | CCTCAATTTTTTTTTCTATT+TGG | + | chr2_2:47283483-47283502 | Msa0254340:intron | 20.0% |
| !!! | TTTTTTTTCTATTTGGATCA+TGG | + | chr2_2:47283490-47283509 | Msa0254340:intron | 20.0% |
| !!! | TTTTAAGTGCTTTTTAACTA+TGG | + | chr2_2:47283703-47283722 | Msa0254340:intron | 20.0% |
| !!! | AATAAGTTTAAAACAGCTTA+TGG | + | chr2_2:47283976-47283995 | Msa0254340:intron | 20.0% |
| !! | AAAAATTACTACTATTCTGA+GGG | - | chr2_2:47284384-47284403 | None:intergenic | 20.0% |
| ! | TTGAAACCTTTATATGATTC+TGG | + | chr2_2:47282285-47282304 | Msa0254340:intron | 25.0% |
| ! | TTAGTTCCAGAATCATATAA+AGG | - | chr2_2:47282294-47282313 | None:intergenic | 25.0% |
| ! | TTGAAAGGAATAATTTCTTC+TGG | - | chr2_2:47282420-47282439 | None:intergenic | 25.0% |
| ! | CTAAATATCATAGACCAAAA+GGG | - | chr2_2:47282545-47282564 | None:intergenic | 25.0% |
| !! | AAATCCTTTTCCTTGAATAT+GGG | + | chr2_2:47282679-47282698 | Msa0254340:intron | 25.0% |
| ! | GGACAAATAACAAATTAACA+AGG | - | chr2_2:47282959-47282978 | None:intergenic | 25.0% |
| !!! | TGTTAATTTGTTATTTGTCC+TGG | + | chr2_2:47282959-47282978 | Msa0254340:intron | 25.0% |
| !! | TGGACAATTGATGAATTTTT+CGG | + | chr2_2:47283379-47283398 | Msa0254340:CDS | 25.0% |
| ! | AATGCAGAAATATTAAGAAC+TGG | + | chr2_2:47283625-47283644 | Msa0254340:intron | 25.0% |
| ! | ATGAATGTTGAAAGTAGTAA+AGG | + | chr2_2:47283789-47283808 | Msa0254340:intron | 25.0% |
| ! | TTAAAACGTTTATCCAAACA+AGG | - | chr2_2:47283845-47283864 | None:intergenic | 25.0% |
| ! | TTATATTCAAGTGCTTATGT+CGG | + | chr2_2:47284036-47284055 | Msa0254340:intron | 25.0% |
| ! | TCTTCATTGGATCTTAAAAT+AGG | - | chr2_2:47284193-47284212 | None:intergenic | 25.0% |
| !!! | TATTTTAAGATCCAATGAAG+AGG | + | chr2_2:47284192-47284211 | Msa0254340:CDS | 25.0% |
| ! | GAAAAATTACTACTATTCTG+AGG | - | chr2_2:47284385-47284404 | None:intergenic | 25.0% |
| GGAAAATTGAAACTTGAAGT+GGG | + | chr2_2:47281669-47281688 | Msa0254340:five_prime_UTR | 30.0% | |
| ATTCAGTGTAATGTTTGTGA+AGG | + | chr2_2:47281743-47281762 | Msa0254340:CDS | 30.0% | |
| ACCTGACAAATATCACATTT+AGG | - | chr2_2:47281902-47281921 | None:intergenic | 30.0% | |
| ! | TATAAGGTTGTGGATTAAAG+AGG | + | chr2_2:47281966-47281985 | Msa0254340:intron | 30.0% |
| ! | AGTTTGGTATGATCAAGTTT+TGG | + | chr2_2:47282061-47282080 | Msa0254340:intron | 30.0% |
| !! | GTATGATCAAGTTTTGGTAT+TGG | + | chr2_2:47282067-47282086 | Msa0254340:intron | 30.0% |
| GCTAAATATCATAGACCAAA+AGG | - | chr2_2:47282546-47282565 | None:intergenic | 30.0% | |
| GTTCAAAACTATTTCCTTGT+TGG | + | chr2_2:47282593-47282612 | Msa0254340:intron | 30.0% | |
| TTCTATGACAAGTTAGAAAG+TGG | + | chr2_2:47282644-47282663 | Msa0254340:intron | 30.0% | |
| ! | CAAATCCTTTTCCTTGAATA+TGG | + | chr2_2:47282678-47282697 | Msa0254340:intron | 30.0% |
| CTCAACAAAAATGTTGACAA+TGG | - | chr2_2:47282930-47282949 | None:intergenic | 30.0% | |
| ! | CATTGTCAACATTTTTGTTG+AGG | + | chr2_2:47282928-47282947 | Msa0254340:intron | 30.0% |
| !! | TAAATCTTTCAGGAAGCATT+CGG | + | chr2_2:47283013-47283032 | Msa0254340:intron | 30.0% |
| ! | GACAGAAGAAGATTTTGTAT+CGG | - | chr2_2:47283224-47283243 | None:intergenic | 30.0% |
| CAGTCAGAATTATAACTACA+TGG | + | chr2_2:47283414-47283433 | Msa0254340:CDS | 30.0% | |
| CAGAATTATAACTACATGGA+TGG | + | chr2_2:47283418-47283437 | Msa0254340:CDS | 30.0% | |
| ! | TTTTCTATCTTCTCTGTTCA+TGG | + | chr2_2:47283536-47283555 | Msa0254340:intron | 30.0% |
| TGTGAACATTGTCATATGAT+TGG | + | chr2_2:47283565-47283584 | Msa0254340:intron | 30.0% | |
| CTGCATTTACAATGTACATT+AGG | - | chr2_2:47283612-47283631 | None:intergenic | 30.0% | |
| !! | AAGCTAATAGTTGTTTTCAC+AGG | + | chr2_2:47283932-47283951 | Msa0254340:intron | 30.0% |
| TCAAATAAGCCAATTCAAAC+AGG | + | chr2_2:47284068-47284087 | Msa0254340:intron | 30.0% | |
| TTTATGGTTGAATGCTTATG+CGG | + | chr2_2:47284112-47284131 | Msa0254340:intron | 30.0% | |
| GCCTAAATGTGATATTTGTC+AGG | + | chr2_2:47281898-47281917 | Msa0254340:CDS | 35.0% | |
| ! | GGTCCTTAAATTTTGTCTAG+AGG | + | chr2_2:47282504-47282523 | Msa0254340:intron | 35.0% |
| CAAAACTATTTCCTTGTTGG+TGG | + | chr2_2:47282596-47282615 | Msa0254340:intron | 35.0% | |
| ! | TCTAACTTGTCATAGAAGCA+AGG | - | chr2_2:47282641-47282660 | None:intergenic | 35.0% |
| TACTCCCATATTCAAGGAAA+AGG | - | chr2_2:47282686-47282705 | None:intergenic | 35.0% | |
| AGAGAAATCGGAACTAACAT+TGG | + | chr2_2:47282721-47282740 | Msa0254340:intron | 35.0% | |
| TAACATTGGAACGTCAACAT+TGG | + | chr2_2:47282735-47282754 | Msa0254340:intron | 35.0% | |
| ! | CTAAAGTGTCAGTGCTATAT+AGG | + | chr2_2:47282832-47282851 | Msa0254340:intron | 35.0% |
| AGTGCTATATAGGTTTCTTG+TGG | + | chr2_2:47282842-47282861 | Msa0254340:intron | 35.0% | |
| ATAGGTTTCTTGTGGTTGTA+TGG | + | chr2_2:47282850-47282869 | Msa0254340:intron | 35.0% | |
| AAGTTCTTTCAAACTGAACC+AGG | - | chr2_2:47282980-47282999 | None:intergenic | 35.0% | |
| ATCTGTCTTCAACGAATTTG+AGG | - | chr2_2:47283185-47283204 | None:intergenic | 35.0% | |
| AATTCGTTGAAGACAGATTC+TGG | + | chr2_2:47283187-47283206 | Msa0254340:CDS | 35.0% | |
| TCATTGTACTCAGATGATTG+AGG | - | chr2_2:47283268-47283287 | None:intergenic | 35.0% | |
| TGGATGGATCATCAAATTCA+AGG | + | chr2_2:47283434-47283453 | Msa0254340:CDS | 35.0% | |
| GGATGGATCATCAAATTCAA+GGG | + | chr2_2:47283435-47283454 | Msa0254340:CDS | 35.0% | |
| ATTGGATCACTGACAAAGAT+TGG | + | chr2_2:47283583-47283602 | Msa0254340:intron | 35.0% | |
| AGTAGCAGTATATCCTTGTT+TGG | + | chr2_2:47283829-47283848 | Msa0254340:intron | 35.0% | |
| AAGATCCAATGAAGAGGAAA+TGG | + | chr2_2:47284198-47284217 | Msa0254340:CDS | 35.0% | |
| GTATTCCATTTCCTCTTCAT+TGG | - | chr2_2:47284206-47284225 | None:intergenic | 35.0% | |
| ! | AATGAATACCGAGGGTTTTT+CGG | - | chr2_2:47284313-47284332 | None:intergenic | 35.0% |
| CATTATCGAATGAATACCGA+GGG | - | chr2_2:47284321-47284340 | None:intergenic | 35.0% | |
| CGATAATGCTCTATTTGTTC+CGG | + | chr2_2:47284333-47284352 | Msa0254340:CDS | 35.0% | |
| ! | TGATGAAGCTGCTTTGTGTT+GGG | + | chr2_2:47281793-47281812 | Msa0254340:CDS | 40.0% |
| TGAGAAGAAGAAGCAGAAAG+AGG | - | chr2_2:47281875-47281894 | None:intergenic | 40.0% | |
| GCGCCTCTAGACAAAATTTA+AGG | - | chr2_2:47282510-47282529 | None:intergenic | 40.0% | |
| TACTGTTACTACCACCAACA+AGG | - | chr2_2:47282610-47282629 | None:intergenic | 40.0% | |
| GCAAGATACTCCCATATTCA+AGG | - | chr2_2:47282692-47282711 | None:intergenic | 40.0% | |
| TGCTTGACACACAGAGAAAT+CGG | + | chr2_2:47282709-47282728 | Msa0254340:intron | 40.0% | |
| !!! | CGGCTATTTCTTTTGTCTAG+AGG | + | chr2_2:47283033-47283052 | Msa0254340:CDS | 40.0% |
| CACTGCAAATGCATTTGTCT+CGG | + | chr2_2:47283096-47283115 | Msa0254340:CDS | 40.0% | |
| ACTGCAAATGCATTTGTCTC+GGG | + | chr2_2:47283097-47283116 | Msa0254340:CDS | 40.0% | |
| CATCAAAGGTTTCTTCTCAC+CGG | + | chr2_2:47283121-47283140 | Msa0254340:CDS | 40.0% | |
| TACCATGATCAGTAGCTTCT+AGG | - | chr2_2:47283159-47283178 | None:intergenic | 40.0% | |
| ATCTTCTTCTGTCTCGAGAA+AGG | + | chr2_2:47283231-47283250 | Msa0254340:CDS | 40.0% | |
| TGGAAAATCTCCAAATCCTC+CGG | - | chr2_2:47283308-47283327 | None:intergenic | 40.0% | |
| AATCGCTTAACACTGCAGTA+AGG | - | chr2_2:47284094-47284113 | None:intergenic | 40.0% | |
| CTGCAGTGTTAAGCGATTTA+TGG | + | chr2_2:47284096-47284115 | Msa0254340:intron | 40.0% | |
| TCCTTCTGATGAGTTTATGC+AGG | + | chr2_2:47284135-47284154 | Msa0254340:intron | 40.0% | |
| AATGGAATACGACGACTACA+TGG | + | chr2_2:47284216-47284235 | Msa0254340:CDS | 40.0% | |
| GCATTATCGAATGAATACCG+AGG | - | chr2_2:47284322-47284341 | None:intergenic | 40.0% | |
| ATGCTAGTAAAGCCTATGTC+CGG | - | chr2_2:47284355-47284374 | None:intergenic | 40.0% | |
| !! | TTGTGAAGGTGCTGAAGCTA+AGG | + | chr2_2:47281757-47281776 | Msa0254340:CDS | 45.0% |
| ! | CTGATGAAGCTGCTTTGTGT+TGG | + | chr2_2:47281792-47281811 | Msa0254340:CDS | 45.0% |
| ! | GCTCGTTAGCATTTCCCTTT+TGG | + | chr2_2:47282528-47282547 | Msa0254340:intron | 45.0% |
| CATTTGTCTCGGGACATCAA+AGG | + | chr2_2:47283107-47283126 | Msa0254340:CDS | 45.0% | |
| CTTCTCACCGGTGTAAAAGT+CGG | + | chr2_2:47283133-47283152 | Msa0254340:CDS | 45.0% | |
| !! | TTCTAGGCCGACTTTTACAC+CGG | - | chr2_2:47283143-47283162 | None:intergenic | 45.0% |
| !! | TATGGTGGTGGTTCTAACTC+TGG | + | chr2_2:47283343-47283362 | Msa0254340:CDS | 45.0% |
| ! | ACTCTGGAAACATGTCACAG+TGG | + | chr2_2:47283359-47283378 | Msa0254340:CDS | 45.0% |
| GCAGTAAGGCCTGTTTGAAT+TGG | - | chr2_2:47284080-47284099 | None:intergenic | 45.0% | |
| GCCTGCATAAACTCATCAGA+AGG | - | chr2_2:47284139-47284158 | None:intergenic | 45.0% | |
| ! | TCCAAGACGAATCTGGAACA+CGG | - | chr2_2:47284243-47284262 | None:intergenic | 45.0% |
| TAAACTGGCCGAAAAACCCT+CGG | + | chr2_2:47284302-47284321 | Msa0254340:CDS | 45.0% | |
| GCTCTATTTGTTCCGGACAT+AGG | + | chr2_2:47284340-47284359 | Msa0254340:CDS | 45.0% | |
| !!! | GTATTTTTTTAATATTTATT+TGG | + | chr2_2:47282012-47282031 | Msa0254340:intron | 5.0% |
| GGCCTAGAAGCTACTGATCA+TGG | + | chr2_2:47283154-47283173 | Msa0254340:CDS | 50.0% | |
| GAAATGTTGCCTACCGAAGC+CGG | + | chr2_2:47283286-47283305 | Msa0254340:CDS | 50.0% | |
| ATCTCCAAATCCTCCGGCTT+CGG | - | chr2_2:47283302-47283321 | None:intergenic | 50.0% | |
| ! | TGGAGATTTTCCACCAGCCA+AGG | + | chr2_2:47283315-47283334 | Msa0254340:CDS | 50.0% |
| ACCACCACCATAAGACACCT+TGG | - | chr2_2:47283335-47283354 | None:intergenic | 50.0% | |
| GAGTTTATGCAGGCTGACAG+TGG | + | chr2_2:47284145-47284164 | Msa0254340:intron | 50.0% | |
| ACCGTGTTCCAGATTCGTCT+TGG | + | chr2_2:47284239-47284258 | Msa0254340:CDS | 50.0% | |
| GGAACTGTCCAAGACGAATC+TGG | - | chr2_2:47284250-47284269 | None:intergenic | 50.0% | |
| CCATAAGACACCTTGGCTGG+TGG | - | chr2_2:47283328-47283347 | None:intergenic | 55.0% | |
| ! | CCACCAGCCAAGGTGTCTTA+TGG | + | chr2_2:47283325-47283344 | Msa0254340:CDS | 55.0% |
| CCACCATAAGACACCTTGGC+TGG | - | chr2_2:47283331-47283350 | None:intergenic | 55.0% | |
| ! | CCAGCCAAGGTGTCTTATGG+TGG | + | chr2_2:47283328-47283347 | Msa0254340:CDS | 55.0% |
| ! | GCCAAGGTGTCTTATGGTGG+TGG | + | chr2_2:47283331-47283350 | Msa0254340:CDS | 55.0% |
| !! | GTAGGTGGTGATGGGATCTG+AGG | - | chr2_2:47284271-47284290 | None:intergenic | 55.0% |
| CCGAAGCTGTAGGTGGTGAT+GGG | - | chr2_2:47284279-47284298 | None:intergenic | 55.0% | |
| CCCATCACCACCTACAGCTT+CGG | + | chr2_2:47284276-47284295 | Msa0254340:CDS | 55.0% | |
| CCATCACCACCTACAGCTTC+GGG | + | chr2_2:47284277-47284296 | Msa0254340:CDS | 55.0% | |
| CATCACCACCTACAGCTTCG+GGG | + | chr2_2:47284278-47284297 | Msa0254340:CDS | 55.0% | |
| TTTAGCCCCGAAGCTGTAGG+TGG | - | chr2_2:47284286-47284305 | None:intergenic | 55.0% | |
| CAGTTTAGCCCCGAAGCTGT+AGG | - | chr2_2:47284289-47284308 | None:intergenic | 55.0% | |
| CTACAGCTTCGGGGCTAAAC+TGG | + | chr2_2:47284287-47284306 | Msa0254340:CDS | 55.0% | |
| ATGTTGCCTACCGAAGCCGG+AGG | + | chr2_2:47283289-47283308 | Msa0254340:CDS | 60.0% | |
| CCAAATCCTCCGGCTTCGGT+AGG | - | chr2_2:47283298-47283317 | None:intergenic | 60.0% | |
| CCTACCGAAGCCGGAGGATT+TGG | + | chr2_2:47283295-47283314 | Msa0254340:CDS | 60.0% | |
| CCCGAAGCTGTAGGTGGTGA+TGG | - | chr2_2:47284280-47284299 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 47281669 | 47284426 | 47281669 | ID=Msa0254340;Name=Msa0254340 |
| chr2_2 | mRNA | 47281669 | 47284426 | 47281669 | ID=Msa0254340-mRNA-1;Parent=Msa0254340;Name=Msa0254340-mRNA-1;_AED=0.02;_eAED=0.02;_QI=68|1|0.33|1|1|1|3|0|294 |
| chr2_2 | exon | 47281669 | 47281919 | 47281669 | ID=Msa0254340-mRNA-1:exon:14394;Parent=Msa0254340-mRNA-1 |
| chr2_2 | exon | 47283025 | 47283456 | 47283025 | ID=Msa0254340-mRNA-1:exon:14395;Parent=Msa0254340-mRNA-1 |
| chr2_2 | exon | 47284157 | 47284426 | 47284157 | ID=Msa0254340-mRNA-1:exon:14396;Parent=Msa0254340-mRNA-1 |
| chr2_2 | five_prime_UTR | 47281669 | 47281736 | 47281669 | ID=Msa0254340-mRNA-1:five_prime_utr;Parent=Msa0254340-mRNA-1 |
| chr2_2 | CDS | 47281737 | 47281919 | 47281737 | ID=Msa0254340-mRNA-1:cds;Parent=Msa0254340-mRNA-1 |
| chr2_2 | CDS | 47283025 | 47283456 | 47283025 | ID=Msa0254340-mRNA-1:cds;Parent=Msa0254340-mRNA-1 |
| chr2_2 | CDS | 47284157 | 47284426 | 47284157 | ID=Msa0254340-mRNA-1:cds;Parent=Msa0254340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
