AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930760 MtrunA17_Chr8g0391901 99.055 635 6 0 1 635 1 635 0.0 1298
Msa0930760 MtrunA17_Chr2g0297971 67.190 573 186 1 59 629 37 609 0.0 813
Msa0930760 MtrunA17_Chr4g0002171 27.139 409 254 15 238 611 32 431 1.22e-30 125
Msa0930760 MtrunA17_Chr2g0327561 47.273 110 49 1 63 172 158 258 2.55e-22 102
Msa0930760 MtrunA17_Chr2g0327561 35.455 110 62 1 63 172 441 541 4.58e-13 72.8
Msa0930760 MtrunA17_Chr8g0369091 35.450 189 99 5 59 246 124 290 3.12e-19 92.4
Msa0930760 MtrunA17_Chr8g0369091 35.455 110 62 1 63 172 412 512 2.82e-12 70.1
Msa0930760 MtrunA17_Chr1g0192821 29.012 324 197 15 311 629 22 317 5.08e-18 88.2
Msa0930760 MtrunA17_Chr4g0061581 29.352 293 156 18 303 572 3 267 2.27e-15 79.7
Msa0930760 MtrunA17_Chr4g0061581 32.000 175 109 6 303 472 115 284 1.07e-12 71.2
Msa0930760 MtrunA17_Chr1g0197401 27.317 205 140 5 291 491 115 314 8.60e-15 77.4
Msa0930760 MtrunA17_Chr1g0197401 25.305 328 204 14 303 614 15 317 4.22e-12 68.9
Msa0930760 MtrunA17_Chr1g0198221 30.721 319 177 20 316 615 20 313 4.00e-14 75.5
Msa0930760 MtrunA17_Chr1g0198221 29.924 264 154 11 365 618 17 259 7.87e-14 74.3
Msa0930760 MtrunA17_Chr4g0030361 33.077 130 76 2 63 190 122 242 8.63e-14 74.7
Msa0930760 MtrunA17_Chr4g0074871 29.470 302 174 18 320 611 282 554 4.33e-13 72.8
Msa0930760 MtrunA17_Chr2g0322121 28.638 213 147 4 303 512 154 364 1.06e-12 71.6
Msa0930760 MtrunA17_Chr7g0272641 27.500 200 132 6 298 491 275 467 6.20e-12 68.9
Msa0930760 MtrunA17_Chr7g0272641 26.087 345 210 17 303 630 174 490 5.38e-11 65.9
Msa0930760 MtrunA17_Chr1g0196221 26.009 223 158 6 298 517 81 299 8.65e-12 68.2
Msa0930760 MtrunA17_Chr1g0196221 26.866 268 158 11 364 611 26 275 1.81e-11 67.4
Msa0930760 MtrunA17_Chr5g0415981 34.545 110 63 1 63 172 252 352 9.45e-12 67.4
Msa0930760 MtrunA17_Chr4g0025471 27.230 213 150 4 303 512 159 369 6.81e-11 65.9
Msa0930760 MtrunA17_Chr2g0286241 25.610 328 198 16 303 619 76 368 6.94e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930760 AT1G68050.1 79.775 623 116 4 15 635 5 619 0.0 1021
Msa0930760 AT5G57360.1 65.289 605 194 4 33 629 10 606 0.0 804
Msa0930760 AT5G57360.2 65.042 595 192 4 33 619 10 596 0.0 789
Msa0930760 AT2G18915.2 62.349 579 195 5 59 629 42 605 0.0 740
Msa0930760 AT2G18915.1 61.102 581 189 7 59 629 42 595 0.0 716
Msa0930760 AT1G51550.1 26.667 405 252 16 243 611 41 436 3.15e-28 119
Msa0930760 AT5G58140.4 43.860 114 55 1 59 172 130 234 1.46e-20 96.7
Msa0930760 AT5G58140.4 33.871 124 71 2 63 184 390 504 2.07e-12 70.9
Msa0930760 AT5G58140.3 43.860 114 55 1 59 172 130 234 2.11e-20 96.7
Msa0930760 AT5G58140.3 33.871 124 71 2 63 184 390 504 2.80e-12 70.5
Msa0930760 AT5G58140.6 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0930760 AT5G58140.6 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0930760 AT5G58140.7 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0930760 AT5G58140.7 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0930760 AT5G58140.5 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0930760 AT5G58140.5 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0930760 AT5G58140.2 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0930760 AT5G58140.2 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0930760 AT5G58140.1 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0930760 AT5G58140.1 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0930760 AT3G45780.2 40.909 110 56 1 63 172 198 298 2.55e-17 86.7
Msa0930760 AT3G45780.2 32.331 133 78 2 63 195 476 596 1.51e-12 71.6
Msa0930760 AT3G45780.1 40.909 110 56 1 63 172 198 298 2.55e-17 86.7
Msa0930760 AT3G45780.1 32.331 133 78 2 63 195 476 596 1.51e-12 71.6
Msa0930760 AT2G36360.5 30.741 270 153 11 365 618 17 268 7.31e-17 84.3
Msa0930760 AT1G18610.1 32.056 287 155 18 356 625 3 266 7.76e-17 84.7
Msa0930760 AT1G18610.1 28.526 312 162 19 287 571 44 321 1.01e-14 77.8
Msa0930760 AT1G18610.2 32.056 287 155 18 356 625 3 266 7.76e-17 84.7
Msa0930760 AT1G18610.2 28.526 312 162 19 287 571 44 321 1.01e-14 77.8
Msa0930760 AT1G03445.1 28.679 265 164 11 303 557 86 335 2.23e-16 83.6
Msa0930760 AT1G03445.2 29.020 255 157 10 303 547 86 326 2.38e-16 83.6
Msa0930760 AT2G36360.3 30.189 265 152 11 365 618 17 259 1.03e-15 80.9
Msa0930760 AT2G36360.3 28.527 319 186 17 315 615 19 313 1.44e-11 67.8
Msa0930760 AT2G36360.4 30.189 265 152 11 365 618 17 259 1.06e-15 80.9
Msa0930760 AT2G36360.4 28.527 319 186 17 315 615 19 313 1.50e-11 67.8
Msa0930760 AT2G36360.2 30.189 265 152 11 365 618 17 259 1.15e-15 80.5
Msa0930760 AT2G36360.2 28.527 319 186 17 315 615 19 313 1.73e-11 67.4
Msa0930760 AT2G36360.1 30.189 265 152 11 365 618 17 259 1.15e-15 80.5
Msa0930760 AT2G36360.1 28.527 319 186 17 315 615 19 313 1.73e-11 67.4
Msa0930760 AT2G02710.2 33.636 110 64 1 63 172 260 360 1.83e-14 76.3
Msa0930760 AT2G02710.2 30.464 151 81 6 61 196 36 177 7.74e-11 65.1
Msa0930760 AT1G74150.1 28.571 266 152 14 317 572 27 264 4.72e-13 72.8
Msa0930760 AT1G74150.2 28.571 266 152 14 317 572 27 264 5.22e-13 72.4
Msa0930760 AT1G74150.3 28.571 266 152 14 317 572 27 264 5.25e-13 72.4
Msa0930760 AT5G04420.2 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0930760 AT5G04420.1 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0930760 AT5G04420.3 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0930760 AT2G02710.1 33.036 112 64 2 63 172 260 362 7.60e-13 71.2
Msa0930760 AT2G02710.1 32.743 113 66 3 61 172 36 139 8.08e-11 65.1
Msa0930760 AT1G08420.1 28.638 213 147 4 303 512 175 385 8.27e-13 72.4
Msa0930760 AT2G27210.1 28.169 213 148 4 303 512 164 374 9.70e-13 72.0
Msa0930760 AT1G08420.2 29.146 199 136 4 303 498 175 371 2.57e-12 70.9
Msa0930760 AT2G27210.2 28.643 199 137 4 303 498 164 360 3.25e-12 70.5
Msa0930760 AT5G27630.3 29.911 224 133 11 289 496 206 421 6.08e-12 69.3
Msa0930760 AT5G27630.4 29.911 224 133 11 289 496 206 421 7.00e-12 68.9
Msa0930760 AT5G27630.1 29.911 224 133 11 289 496 206 421 7.91e-12 68.9
Msa0930760 AT5G27630.2 29.911 224 133 11 289 496 206 421 1.04e-11 68.2
Msa0930760 AT2G02710.4 32.743 113 66 3 61 172 36 139 6.45e-11 64.7
Msa0930760 AT2G02710.3 30.464 151 81 6 61 196 36 177 6.71e-11 64.7

Find 181 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATAGGCTTGTATTATT+TGG 0.172159 6_2:+79836598 Msa0930760:CDS
TGTGGGAGGGTTATTATATT+TGG 0.207983 6_2:+79837270 Msa0930760:CDS
GGGCACTCACTCTCAGTTTA+TGG 0.213464 6_2:+79837048 Msa0930760:CDS
CATCGATTGGTTCTGTTTGC+AGG 0.229475 6_2:+79836356 Msa0930760:CDS
CTTCATGGACTCCTCCTTCT+AGG 0.236476 6_2:+79837022 Msa0930760:CDS
CACAATTGAAGGCTCTAAAT+TGG 0.241941 6_2:+79836903 Msa0930760:CDS
TCTCTTGCTTAAACAGTTCT+TGG 0.261051 6_2:+79836743 Msa0930760:CDS
ACACTAACCCTTTGCCATTC+TGG 0.266477 6_2:-79836685 None:intergenic
GTGCTTGTGCTGCAGGAAAT+AGG 0.284638 6_2:+79836584 Msa0930760:CDS
TGGACTCCTCCTTCTAGGTT+AGG 0.286313 6_2:+79837027 Msa0930760:CDS
CTATGACCCCAAGCAAATTT+AGG 0.308735 6_2:-79837393 None:intergenic
ACCGTCTCAGCTATTTCTAT+TGG 0.311844 6_2:+79837317 Msa0930760:CDS
TGTTTGCTTCGGAAAAGATT+TGG 0.312883 6_2:-79836135 None:intergenic
CAGCCGGTTCTTGCAATATA+GGG 0.313877 6_2:+79835919 Msa0930760:intron
AAAGTCTTTGAAATCTCAAC+TGG 0.330143 6_2:+79835184 Msa0930760:CDS
ATATTTGGAGGTTCCATTGC+AGG 0.333382 6_2:+79837285 Msa0930760:CDS
GCAGCCGGTTCTTGCAATAT+AGG 0.345908 6_2:+79835918 Msa0930760:intron
ATCCTCCCCGCCCGGCCGAT+GGG 0.346004 6_2:+79836711 Msa0930760:CDS
AGCTCAGAGGCGGCATCCTT+TGG 0.346721 6_2:+79835949 Msa0930760:CDS
TGATGTGTTTGTGCTTGATT+TGG 0.349642 6_2:+79836807 Msa0930760:CDS
GGTTGGAGGGACTAGAGTTT+TGG 0.350009 6_2:+79837425 Msa0930760:CDS
TGTGGCCCCATCGGCCGGGC+GGG 0.357098 6_2:-79836717 None:intergenic
CTACTCTTGAGGCTGTTTGC+TGG 0.369379 6_2:+79836512 Msa0930760:CDS
GTGGAGGATCCTCAATGTTC+CGG 0.370289 6_2:+79837362 Msa0930760:CDS
ATGCAAGTCTCTCTGAAAAC+TGG 0.371445 6_2:-79836181 None:intergenic
CGCCGCCTCTTCCGAGATCT+TGG 0.372949 6_2:+79836869 Msa0930760:CDS
GTTGGGTAGAAGAAAAGTTC+TGG 0.374493 6_2:-79835097 None:intergenic
ACGGCCCCAACCTAACTTCT+TGG 0.384038 6_2:-79836473 None:intergenic
GGAGAGAAATTCCAACTTCA+TGG 0.384945 6_2:+79837007 Msa0930760:CDS
ATGAAGCCCTTGGTCGTAAC+TGG 0.387595 6_2:+79835218 Msa0930760:CDS
CACGTCGGTTTCTCTTCGGC+AGG 0.391277 6_2:-79837342 None:intergenic
GGAACCACCTAAATTTGCTT+GGG 0.393741 6_2:+79837386 Msa0930760:CDS
GAGTGTGTGGCCCCATCGGC+CGG 0.399734 6_2:-79836722 None:intergenic
TGGACATACCGGGGAGGAAT+GGG 0.400686 6_2:+79837455 Msa0930760:CDS
TTGGTGTTGGGTGGACATAC+CGG 0.402125 6_2:+79837444 Msa0930760:CDS
TGGAGGATCCTCAATGTTCC+GGG 0.414753 6_2:+79837363 Msa0930760:CDS
TGGTGTTGGGTGGACATACC+GGG 0.415143 6_2:+79837445 Msa0930760:CDS
ACAAAAGATGTTGGTGTTGT+TGG 0.417028 6_2:-79835115 None:intergenic
GGAGTCGTGACACACATAAT+AGG 0.418405 6_2:+79836109 Msa0930760:CDS
TATCCTCCCCGCCCGGCCGA+TGG 0.425086 6_2:+79836710 Msa0930760:CDS
GAACTGATGACCAAGAAGTT+AGG 0.427716 6_2:+79836463 Msa0930760:CDS
CACAGCTCATGCACAATTGA+AGG 0.428020 6_2:+79836892 Msa0930760:CDS
AATTTCAGTGCTTGTGCTGC+AGG 0.430336 6_2:+79836577 Msa0930760:CDS
AGTGAGTGCCCTAACCTAGA+AGG 0.434298 6_2:-79837036 None:intergenic
TTGCAAAGAGTGGACACTTA+AGG 0.435187 6_2:+79837100 Msa0930760:CDS
GCTCGTTCTTTGTCAATTGA+CGG 0.436187 6_2:-79836384 None:intergenic
GCTAAATATTCTCCCAAAAG+TGG 0.437183 6_2:+79836223 Msa0930760:CDS
TCAGCTTTCTGATGAAGTCT+TGG 0.437833 6_2:+79836294 Msa0930760:CDS
AGGACAAAGATTCTCATGTT+TGG 0.440239 6_2:+79837072 Msa0930760:CDS
GTTCAAGTCTATGTTTGCTT+CGG 0.440669 6_2:-79836146 None:intergenic
GGGAGGGTTATTATATTTGG+AGG 0.441072 6_2:+79837273 Msa0930760:CDS
GGACTCCTCCTTCTAGGTTA+GGG 0.442999 6_2:+79837028 Msa0930760:CDS
GGTTCATAATCAAAATCAAA+AGG 0.443531 6_2:+79834982 Msa0930760:CDS
ACTCCATCATCATCATGAAT+TGG 0.445762 6_2:-79836091 None:intergenic
ACTTTGTTGACATAAATGAT+TGG 0.446777 6_2:-79835166 None:intergenic
GTGGCCCCATCGGCCGGGCG+GGG 0.447496 6_2:-79836716 None:intergenic
TAGGTTGGGGCCGTCTGACT+CGG 0.448906 6_2:+79836482 Msa0930760:CDS
GGTCATAGCACTTGTGTGGT+TGG 0.452644 6_2:+79837408 Msa0930760:CDS
TGACAAAGAACGAGCACGTT+AGG 0.454258 6_2:+79836392 Msa0930760:CDS
AGGCTCTAAATTGGTTGTCT+CGG 0.461684 6_2:+79836912 Msa0930760:CDS
GGCTCTAAATTGGTTGTCTC+GGG 0.463717 6_2:+79836913 Msa0930760:CDS
TCCTCCCCGCCCGGCCGATG+GGG 0.463860 6_2:+79836712 Msa0930760:CDS
CCGAGGGATGTTGCATCGAT+TGG 0.463890 6_2:+79836343 Msa0930760:CDS
AATAGGCTTGTATTATTTGG+AGG 0.465306 6_2:+79836601 Msa0930760:CDS
AAGCCTAAGTCTGTTGACTA+AGG 0.465707 6_2:-79836065 None:intergenic
GAACGAGCACGTTAGGAAGA+TGG 0.469272 6_2:+79836399 Msa0930760:CDS
CTTGTATTATTTGGAGGTGA+AGG 0.470299 6_2:+79836607 Msa0930760:CDS
GCCCCATCGGCCGGGCGGGG+AGG 0.477243 6_2:-79836713 None:intergenic
GATGACCAAGAAGTTAGGTT+GGG 0.477266 6_2:+79836468 Msa0930760:CDS
CAAAAGATGTTGGTGTTGTT+GGG 0.483296 6_2:-79835114 None:intergenic
GGGAACCACCTAAATTTGCT+TGG 0.486452 6_2:+79837385 Msa0930760:CDS
CACATCTCTTCGCGCTGCCG+TGG 0.487345 6_2:-79836262 None:intergenic
CTCCCTTAGTCAACAGACTT+AGG 0.488483 6_2:+79836062 Msa0930760:CDS
CATAGCACTTGTGTGGTTGG+AGG 0.488750 6_2:+79837411 Msa0930760:CDS
CCTCCACGTCGGTTTCTCTT+CGG 0.490496 6_2:-79837346 None:intergenic
ATTAGAAGATGTCTTGAAGA+AGG 0.497885 6_2:+79835995 Msa0930760:CDS
GTGGACATACCGGGGAGGAA+TGG 0.501214 6_2:+79837454 Msa0930760:CDS
GTTGGAATTTCTCTCCATGT+AGG 0.501983 6_2:-79837000 None:intergenic
GGATGCCGCCTCTGAGCTCT+AGG 0.505139 6_2:-79835944 None:intergenic
CTTCTGAATTTCAGAAAGGA+TGG 0.505201 6_2:+79836037 Msa0930760:CDS
TTGCAGTAAGCATGCCTTGT+GGG 0.506427 6_2:+79837253 Msa0930760:CDS
TGAAATTCAGAAGTTCCCCT+TGG 0.507034 6_2:-79836027 None:intergenic
GATCCCTATATTGCAAGAAC+CGG 0.508385 6_2:-79835922 None:intergenic
TTTGGTGGATGTGGTAGGCA+AGG 0.511551 6_2:+79836775 Msa0930760:CDS
GAAGGAGGAGTCCATGAAGT+TGG 0.513595 6_2:-79837018 None:intergenic
CAGTAAGCATGCCTTGTGGG+AGG 0.517765 6_2:+79837256 Msa0930760:CDS
ACAAAGATTCTCATGTTTGG+TGG 0.518883 6_2:+79837075 Msa0930760:CDS
GGAACTTCTGAATTTCAGAA+AGG 0.531302 6_2:+79836033 Msa0930760:CDS
CCGACATGGAAGGAAGTCTT+CGG 0.531353 6_2:+79836841 Msa0930760:CDS
AGATGGTTTGTCAAAACGCA+TGG 0.532902 6_2:+79836416 Msa0930760:CDS
CATTCTAGTTGCCTCCATTG+TGG 0.534438 6_2:-79837168 None:intergenic
GCAAATTTAGGTGGTTCCCC+CGG 0.536214 6_2:-79837381 None:intergenic
CAAAGAAGTGACAGGTACAT+TGG 0.538138 6_2:+79836441 Msa0930760:CDS
ATAGCACTTGTGTGGTTGGA+GGG 0.538751 6_2:+79837412 Msa0930760:CDS
AAGAGAGTGTGTGGCCCCAT+CGG 0.538839 6_2:-79836726 None:intergenic
TCGGGCGGCTGCACAGATGC+CGG 0.544982 6_2:+79836931 Msa0930760:CDS
AGGTTGGGGCCGTCTGACTC+GGG 0.545100 6_2:+79836483 Msa0930760:CDS
GTTCATAATCAAAATCAAAA+GGG 0.549520 6_2:+79834983 Msa0930760:CDS
GGACACTTAAGGTTAAGATC+AGG 0.550094 6_2:+79837111 Msa0930760:CDS
CGATTGGTTCTGTTTGCAGG+AGG 0.551211 6_2:+79836359 Msa0930760:CDS
AGGAGTGGATATGCAGCCTA+TGG 0.551520 6_2:+79836627 Msa0930760:CDS
CTAGAATGTAGTGCATTCAC+AGG 0.551583 6_2:+79837183 Msa0930760:CDS
ATCTTACCAGTTACGACCAA+GGG 0.552243 6_2:-79835224 None:intergenic
AAGAAGGTATTGAGTTCCAA+GGG 0.553691 6_2:+79836011 Msa0930760:CDS
TGATGACCAAGAAGTTAGGT+TGG 0.554354 6_2:+79836467 Msa0930760:CDS
TATCGTGCTCATGAAGCCCT+TGG 0.555109 6_2:+79835208 Msa0930760:CDS
TCAGAGGCGGCATCCTTTGG+TGG 0.557577 6_2:+79835952 Msa0930760:CDS
CATAATCAAAATCAAAAGGG+TGG 0.561242 6_2:+79834986 Msa0930760:CDS
AAAAGTTACAGTTGGAGGCG+GGG 0.563457 6_2:+79836537 Msa0930760:CDS
AGTCTCTCTGAAAACTGGAT+AGG 0.564618 6_2:-79836176 None:intergenic
ACGCCAATTCATGATGATGA+TGG 0.567655 6_2:+79836088 Msa0930760:CDS
CTGTGCCAAGATCTCGGAAG+AGG 0.567792 6_2:-79836874 None:intergenic
CTAAGAATCCAGAATGGCAA+AGG 0.567914 6_2:+79836677 Msa0930760:CDS
ACGTCGGTTTCTCTTCGGCA+GGG 0.569618 6_2:-79837341 None:intergenic
AGCCTAAGTCTGTTGACTAA+GGG 0.572540 6_2:-79836064 None:intergenic
CTAATCTCAGACACAACGAC+TGG 0.572852 6_2:-79835977 None:intergenic
AGTGTGTGGCCCCATCGGCC+GGG 0.576130 6_2:-79836721 None:intergenic
TGCTCAACAGCCGACATGGA+AGG 0.576956 6_2:+79836831 Msa0930760:CDS
CCGAAGACTTCCTTCCATGT+CGG 0.579808 6_2:-79836841 None:intergenic
AGAACAAAAGTATCATCCAT+AGG 0.580180 6_2:-79836643 None:intergenic
TCCAATAGAAATAGCTGAGA+CGG 0.580190 6_2:-79837318 None:intergenic
GATGGTTTGTCAAAACGCAT+GGG 0.583838 6_2:+79836417 Msa0930760:CDS
ATAATCAAAATCAAAAGGGT+GGG 0.584258 6_2:+79834987 Msa0930760:CDS
CCAATCGATGCAACATCCCT+CGG 0.585601 6_2:-79836343 None:intergenic
TGCCAAGATCTCGGAAGAGG+CGG 0.585827 6_2:-79836871 None:intergenic
AGTAAGCATGCCTTGTGGGA+GGG 0.586759 6_2:+79837257 Msa0930760:CDS
CGGTGAATGAAGACCTGCAA+TGG 0.588794 6_2:-79837298 None:intergenic
GTGTGGCCCCATCGGCCGGG+CGG 0.590319 6_2:-79836718 None:intergenic
CATGAGCTGTGCCAAGATCT+CGG 0.590774 6_2:-79836880 None:intergenic
TAAGAATCCAGAATGGCAAA+GGG 0.592387 6_2:+79836678 Msa0930760:CDS
GAAAATTATTGTACACTCCA+CGG 0.593713 6_2:+79836245 Msa0930760:CDS
TGAGTTGCATGAGTTGTGCT+TGG 0.594676 6_2:+79837485 Msa0930760:CDS
TGGATGCTCAACAGCCGACA+TGG 0.596002 6_2:+79836827 Msa0930760:CDS
GGTGTTGGGTGGACATACCG+GGG 0.599502 6_2:+79837446 Msa0930760:CDS
TTTGGTGGACTTGCAAAGAG+TGG 0.599541 6_2:+79837090 Msa0930760:CDS
ATTCAGCACCCATTCCTCCC+CGG 0.599838 6_2:-79837463 None:intergenic
TAGTAAGCTCCCGAGTCAGA+CGG 0.604022 6_2:-79836492 None:intergenic
ACATGATCTAGTCGAGGAGG+AGG 0.604406 6_2:-79837231 None:intergenic
TCTAAATTGGTTGTCTCGGG+CGG 0.604939 6_2:+79836916 Msa0930760:CDS
GAAGAAGGTATTGAGTTCCA+AGG 0.605857 6_2:+79836010 Msa0930760:CDS
ATTATTTGGAGGTGAAGGAG+TGG 0.606129 6_2:+79836612 Msa0930760:CDS
ATGACCAAGAAGTTAGGTTG+GGG 0.608700 6_2:+79836469 Msa0930760:CDS
GCATGGGGCAAAGAAGTGAC+AGG 0.615126 6_2:+79836433 Msa0930760:CDS
TCGGGAGCTTACTACTCTTG+AGG 0.615782 6_2:+79836501 Msa0930760:CDS
GCACTGAAATTGCAGCGTGA+AGG 0.616623 6_2:-79836565 None:intergenic
CTTAAGGTTAAGATCAGGTG+AGG 0.617307 6_2:+79837116 Msa0930760:CDS
ACTCACTCTCAGTTTATGGT+AGG 0.619329 6_2:+79837052 Msa0930760:CDS
GAGTGCCCTAACCTAGAAGG+AGG 0.621134 6_2:-79837033 None:intergenic
TTGGGGTCATAGCACTTGTG+TGG 0.623428 6_2:+79837404 Msa0930760:CDS
AGTGTGATATCCTCCCCGCC+CGG 0.623636 6_2:+79836703 Msa0930760:CDS
TCTGATACAACAAAAGATGT+TGG 0.624603 6_2:-79835124 None:intergenic
TGTGTCACTAAGAAGTACTC+CGG 0.630445 6_2:-79836950 None:intergenic
AATCTTACCAGTTACGACCA+AGG 0.632469 6_2:-79835225 None:intergenic
TGTTTAAGCAAGAGAGTGTG+TGG 0.633821 6_2:-79836735 None:intergenic
TTGATGCTAAGAATCCAGAA+TGG 0.634155 6_2:+79836671 Msa0930760:CDS
GAACCACCTAAATTTGCTTG+GGG 0.636271 6_2:+79837387 Msa0930760:CDS
GGAGGATCCTCAATGTTCCG+GGG 0.639537 6_2:+79837364 Msa0930760:CDS
TGACCCCAAGCAAATTTAGG+TGG 0.642462 6_2:-79837390 None:intergenic
ATTGTCACGCTTGACACCGA+GGG 0.643189 6_2:+79836327 Msa0930760:CDS
TCACAATAGATAATCCTACA+TGG 0.646440 6_2:+79836986 Msa0930760:CDS
CCGAAGAGAAACCGACGTGG+AGG 0.652010 6_2:+79837346 Msa0930760:CDS
ATGTAGGATTATCTATTGTG+AGG 0.656684 6_2:-79836984 None:intergenic
AAGCTGAACAACCACAATGG+AGG 0.657091 6_2:+79837157 Msa0930760:CDS
AATATAATAACCCTCCCACA+AGG 0.660973 6_2:-79837267 None:intergenic
CGGCAGCGCGAAGAGATGTG+TGG 0.661003 6_2:+79836265 Msa0930760:CDS
ACAACGACTGGATCCACCAA+AGG 0.667336 6_2:-79835965 None:intergenic
GAGGATCCTCAATGTTCCGG+GGG 0.669777 6_2:+79837365 Msa0930760:CDS
ATGGTTTGTCAAAACGCATG+GGG 0.675604 6_2:+79836418 Msa0930760:CDS
TAGAAGCTGAACAACCACAA+TGG 0.675759 6_2:+79837154 Msa0930760:CDS
AAGTCTTTGAAATCTCAACT+GGG 0.680191 6_2:+79835185 Msa0930760:CDS
ACTGCAACATGATCTAGTCG+AGG 0.685428 6_2:-79837237 None:intergenic
GCAACATGATCTAGTCGAGG+AGG 0.692964 6_2:-79837234 None:intergenic
GGGATCCTAGAGCTCAGAGG+CGG 0.695636 6_2:+79835939 Msa0930760:CDS
TGAAAACTGGATAGGAAACA+CGG 0.696786 6_2:-79836168 None:intergenic
GTTGCAGTAAGCATGCCTTG+TGG 0.698959 6_2:+79837252 Msa0930760:CDS
CTGCCGAAGAGAAACCGACG+TGG 0.709608 6_2:+79837343 Msa0930760:CDS
TATTGTCACGCTTGACACCG+AGG 0.711160 6_2:+79836326 Msa0930760:CDS
ATAGGGATCCTAGAGCTCAG+AGG 0.719677 6_2:+79835936 Msa0930760:CDS
GTTGGGTGGACATACCGGGG+AGG 0.725055 6_2:+79837449 Msa0930760:CDS
AGAAGGTATTGAGTTCCAAG+GGG 0.731475 6_2:+79836012 Msa0930760:CDS
ACATTGAGGATCCTCCACGT+CGG 0.754895 6_2:-79837357 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATCTTTTTTATTGATTTA+AGG + chr6_2:79835283-79835302 Msa0930760:intron 10.0%
!! AAAAATAAAATTTGAGAAAT+AGG - chr6_2:79835564-79835583 None:intergenic 10.0%
!! TTATTTATTATCCAATAAGA+TGG - chr6_2:79835521-79835540 None:intergenic 15.0%
!! AAAGAAATATCTTGTAAAAA+AGG - chr6_2:79835831-79835850 None:intergenic 15.0%
!!! TTCTTTTAGATATTTTGATT+TGG + chr6_2:79835845-79835864 Msa0930760:intron 15.0%
!! GTTCATAATCAAAATCAAAA+GGG + chr6_2:79834983-79835002 Msa0930760:CDS 20.0%
!!! CTTTTTTATTGATTTAAGGT+TGG + chr6_2:79835287-79835306 Msa0930760:intron 20.0%
!!! TTTTTTAGTTTAAGGAAAGT+GGG - chr6_2:79835354-79835373 None:intergenic 20.0%
!!! TTTTTTTAGTTTAAGGAAAG+TGG - chr6_2:79835355-79835374 None:intergenic 20.0%
!!! GGGTTTTTTTTTTTAGTTTA+AGG - chr6_2:79835362-79835381 None:intergenic 20.0%
!!! AAAAAAACCCTTTTATCAAA+CGG + chr6_2:79835372-79835391 Msa0930760:intron 20.0%
!! TTTGCAAAATGAAACAAAAT+TGG - chr6_2:79835450-79835469 None:intergenic 20.0%
!!! AAGTTTATTTTCCATTCTAT+TGG + chr6_2:79835600-79835619 Msa0930760:intron 20.0%
!! AAAATGTTAAACCAATAGAA+TGG - chr6_2:79835614-79835633 None:intergenic 20.0%
!! AGTACTTTCCATAATAATTA+AGG + chr6_2:79835671-79835690 Msa0930760:intron 20.0%
!! TTGATGAACCTTAATTATTA+TGG - chr6_2:79835682-79835701 None:intergenic 20.0%
!! AATACCAAATATAACCAAAA+AGG - chr6_2:79835802-79835821 None:intergenic 20.0%
!!! TACAATAATTTTCCACTTTT+GGG - chr6_2:79836238-79836257 None:intergenic 20.0%
! GGTTCATAATCAAAATCAAA+AGG + chr6_2:79834982-79835001 Msa0930760:CDS 25.0%
! ATAATCAAAATCAAAAGGGT+GGG + chr6_2:79834987-79835006 Msa0930760:CDS 25.0%
!!! AAGAAAAGTTCTGGTTTTAA+TGG - chr6_2:79835091-79835110 None:intergenic 25.0%
! ACTTTGTTGACATAAATGAT+TGG - chr6_2:79835169-79835188 None:intergenic 25.0%
!! TTCTTGCATCATAATTTTGT+TGG + chr6_2:79835257-79835276 Msa0930760:intron 25.0%
!! TCTTGCATCATAATTTTGTT+GGG + chr6_2:79835258-79835277 Msa0930760:intron 25.0%
!! ATTTTCACCGTTTGATAAAA+GGG - chr6_2:79835382-79835401 None:intergenic 25.0%
!! GAATGGATTCTATAAAAATG+TGG - chr6_2:79835473-79835492 None:intergenic 25.0%
! GGAATCAAAATTAGAAAGAA+TGG - chr6_2:79835490-79835509 None:intergenic 25.0%
!!! AGAAATTCTAAAGCAATTAG+AGG - chr6_2:79835891-79835910 None:intergenic 25.0%
!! GTACAATAATTTTCCACTTT+TGG - chr6_2:79836239-79836258 None:intergenic 25.0%
TAAAAACGAAGATGAAGAAG+AGG + chr6_2:79834961-79834980 Msa0930760:CDS 30.0%
CATAATCAAAATCAAAAGGG+TGG + chr6_2:79834986-79835005 Msa0930760:CDS 30.0%
TCTGATACAACAAAAGATGT+TGG - chr6_2:79835127-79835146 None:intergenic 30.0%
!! AAAGTCTTTGAAATCTCAAC+TGG + chr6_2:79835184-79835203 Msa0930760:CDS 30.0%
!! AAGTCTTTGAAATCTCAACT+GGG + chr6_2:79835185-79835204 Msa0930760:CDS 30.0%
! CTTGCATCATAATTTTGTTG+GGG + chr6_2:79835259-79835278 Msa0930760:intron 30.0%
! CATTTTCACCGTTTGATAAA+AGG - chr6_2:79835383-79835402 None:intergenic 30.0%
TAGTATAGATCTGAAAGGAA+TGG - chr6_2:79835409-79835428 None:intergenic 30.0%
CAACATAGTATAGATCTGAA+AGG - chr6_2:79835414-79835433 None:intergenic 30.0%
!! GGTTTAACATTTTGACAACA+TGG + chr6_2:79835621-79835640 Msa0930760:intron 30.0%
!! ATTTTGACAACATGGTTACT+TGG + chr6_2:79835629-79835648 Msa0930760:intron 30.0%
ACTCTCATAGAATCAATGAT+AGG + chr6_2:79835769-79835788 Msa0930760:intron 30.0%
CTCTCATAGAATCAATGATA+GGG + chr6_2:79835770-79835789 Msa0930760:intron 30.0%
!!! CTGTCCTTTTTGGTTATATT+TGG + chr6_2:79835795-79835814 Msa0930760:intron 30.0%
ATTAGAAGATGTCTTGAAGA+AGG + chr6_2:79835995-79836014 Msa0930760:CDS 30.0%
GAAAATTATTGTACACTCCA+CGG + chr6_2:79836245-79836264 Msa0930760:CDS 30.0%
GGAAATAGGCTTGTATTATT+TGG + chr6_2:79836598-79836617 Msa0930760:CDS 30.0%
AATAGGCTTGTATTATTTGG+AGG + chr6_2:79836601-79836620 Msa0930760:CDS 30.0%
!! AGAACAAAAGTATCATCCAT+AGG - chr6_2:79836646-79836665 None:intergenic 30.0%
ATGTAGGATTATCTATTGTG+AGG - chr6_2:79836987-79837006 None:intergenic 30.0%
TCACAATAGATAATCCTACA+TGG + chr6_2:79836986-79837005 Msa0930760:CDS 30.0%
!! CAAAAGATGTTGGTGTTGTT+GGG - chr6_2:79835117-79835136 None:intergenic 35.0%
!! ACAAAAGATGTTGGTGTTGT+TGG - chr6_2:79835118-79835137 None:intergenic 35.0%
ATCCAATAAGATGGAAGCTA+GGG - chr6_2:79835512-79835531 None:intergenic 35.0%
TATCCAATAAGATGGAAGCT+AGG - chr6_2:79835513-79835532 None:intergenic 35.0%
!! GAATTTCTTTTGTTTGCAGC+CGG + chr6_2:79835903-79835922 Msa0930760:intron 35.0%
!! AAGAAGGTATTGAGTTCCAA+GGG + chr6_2:79836011-79836030 Msa0930760:CDS 35.0%
GGAACTTCTGAATTTCAGAA+AGG + chr6_2:79836033-79836052 Msa0930760:CDS 35.0%
CTTCTGAATTTCAGAAAGGA+TGG + chr6_2:79836037-79836056 Msa0930760:CDS 35.0%
ACTCCATCATCATCATGAAT+TGG - chr6_2:79836094-79836113 None:intergenic 35.0%
TGTTTGCTTCGGAAAAGATT+TGG - chr6_2:79836138-79836157 None:intergenic 35.0%
GTTCAAGTCTATGTTTGCTT+CGG - chr6_2:79836149-79836168 None:intergenic 35.0%
TGAAAACTGGATAGGAAACA+CGG - chr6_2:79836171-79836190 None:intergenic 35.0%
GCTAAATATTCTCCCAAAAG+TGG + chr6_2:79836223-79836242 Msa0930760:CDS 35.0%
TGCTGGAAAAAAGTTACAGT+TGG + chr6_2:79836529-79836548 Msa0930760:CDS 35.0%
TGGAAAAAAGTTACAGTTGG+AGG + chr6_2:79836532-79836551 Msa0930760:CDS 35.0%
AAAAAAGTTACAGTTGGAGG+CGG + chr6_2:79836535-79836554 Msa0930760:CDS 35.0%
CTTGTATTATTTGGAGGTGA+AGG + chr6_2:79836607-79836626 Msa0930760:CDS 35.0%
TTGATGCTAAGAATCCAGAA+TGG + chr6_2:79836671-79836690 Msa0930760:CDS 35.0%
TAAGAATCCAGAATGGCAAA+GGG + chr6_2:79836678-79836697 Msa0930760:CDS 35.0%
TCTCTTGCTTAAACAGTTCT+TGG + chr6_2:79836743-79836762 Msa0930760:CDS 35.0%
!! AGTTCTTGGCTAGTTGTTTT+TGG + chr6_2:79836757-79836776 Msa0930760:CDS 35.0%
TGATGTGTTTGTGCTTGATT+TGG + chr6_2:79836807-79836826 Msa0930760:CDS 35.0%
!! CACAATTGAAGGCTCTAAAT+TGG + chr6_2:79836903-79836922 Msa0930760:CDS 35.0%
AGGACAAAGATTCTCATGTT+TGG + chr6_2:79837072-79837091 Msa0930760:CDS 35.0%
ACAAAGATTCTCATGTTTGG+TGG + chr6_2:79837075-79837094 Msa0930760:CDS 35.0%
AATATAATAACCCTCCCACA+AGG - chr6_2:79837270-79837289 None:intergenic 35.0%
TGTGGGAGGGTTATTATATT+TGG + chr6_2:79837270-79837289 Msa0930760:CDS 35.0%
TCCAATAGAAATAGCTGAGA+CGG - chr6_2:79837321-79837340 None:intergenic 35.0%
GTTGGGTAGAAGAAAAGTTC+TGG - chr6_2:79835100-79835119 None:intergenic 40.0%
ATCTTACCAGTTACGACCAA+GGG - chr6_2:79835227-79835246 None:intergenic 40.0%
AATCTTACCAGTTACGACCA+AGG - chr6_2:79835228-79835247 None:intergenic 40.0%
TCCAATAAGATGGAAGCTAG+GGG - chr6_2:79835511-79835530 None:intergenic 40.0%
! TGATAGGGAACTGTCCTTTT+TGG + chr6_2:79835785-79835804 Msa0930760:intron 40.0%
GATCCCTATATTGCAAGAAC+CGG - chr6_2:79835925-79835944 None:intergenic 40.0%
!! GAAGAAGGTATTGAGTTCCA+AGG + chr6_2:79836010-79836029 Msa0930760:CDS 40.0%
!! AGAAGGTATTGAGTTCCAAG+GGG + chr6_2:79836012-79836031 Msa0930760:CDS 40.0%
TGAAATTCAGAAGTTCCCCT+TGG - chr6_2:79836030-79836049 None:intergenic 40.0%
! AGCCTAAGTCTGTTGACTAA+GGG - chr6_2:79836067-79836086 None:intergenic 40.0%
! AAGCCTAAGTCTGTTGACTA+AGG - chr6_2:79836068-79836087 None:intergenic 40.0%
! ACGCCAATTCATGATGATGA+TGG + chr6_2:79836088-79836107 Msa0930760:CDS 40.0%
! AGTCTCTCTGAAAACTGGAT+AGG - chr6_2:79836179-79836198 None:intergenic 40.0%
! ATGCAAGTCTCTCTGAAAAC+TGG - chr6_2:79836184-79836203 None:intergenic 40.0%
TCAGCTTTCTGATGAAGTCT+TGG + chr6_2:79836294-79836313 Msa0930760:CDS 40.0%
GCTCGTTCTTTGTCAATTGA+CGG - chr6_2:79836387-79836406 None:intergenic 40.0%
! AGATGGTTTGTCAAAACGCA+TGG + chr6_2:79836416-79836435 Msa0930760:CDS 40.0%
! GATGGTTTGTCAAAACGCAT+GGG + chr6_2:79836417-79836436 Msa0930760:CDS 40.0%
! ATGGTTTGTCAAAACGCATG+GGG + chr6_2:79836418-79836437 Msa0930760:CDS 40.0%
CAAAGAAGTGACAGGTACAT+TGG + chr6_2:79836441-79836460 Msa0930760:CDS 40.0%
GAACTGATGACCAAGAAGTT+AGG + chr6_2:79836463-79836482 Msa0930760:CDS 40.0%
TGATGACCAAGAAGTTAGGT+TGG + chr6_2:79836467-79836486 Msa0930760:CDS 40.0%
GATGACCAAGAAGTTAGGTT+GGG + chr6_2:79836468-79836487 Msa0930760:CDS 40.0%
! ATGACCAAGAAGTTAGGTTG+GGG + chr6_2:79836469-79836488 Msa0930760:CDS 40.0%
AAAAAGTTACAGTTGGAGGC+GGG + chr6_2:79836536-79836555 Msa0930760:CDS 40.0%
ATTATTTGGAGGTGAAGGAG+TGG + chr6_2:79836612-79836631 Msa0930760:CDS 40.0%
CTAAGAATCCAGAATGGCAA+AGG + chr6_2:79836677-79836696 Msa0930760:CDS 40.0%
! TGTTTAAGCAAGAGAGTGTG+TGG - chr6_2:79836738-79836757 None:intergenic 40.0%
!!! TCTTGGCTAGTTGTTTTTGG+TGG + chr6_2:79836760-79836779 Msa0930760:CDS 40.0%
!!! CTAGTTGTTTTTGGTGGATG+TGG + chr6_2:79836766-79836785 Msa0930760:CDS 40.0%
!!! TTGTTTTTGGTGGATGTGGT+AGG + chr6_2:79836770-79836789 Msa0930760:CDS 40.0%
!! AGGCTCTAAATTGGTTGTCT+CGG + chr6_2:79836912-79836931 Msa0930760:CDS 40.0%
!! TGTGTCACTAAGAAGTACTC+CGG - chr6_2:79836953-79836972 None:intergenic 40.0%
GTTGGAATTTCTCTCCATGT+AGG - chr6_2:79837003-79837022 None:intergenic 40.0%
GGAGAGAAATTCCAACTTCA+TGG + chr6_2:79837007-79837026 Msa0930760:CDS 40.0%
ACTCACTCTCAGTTTATGGT+AGG + chr6_2:79837052-79837071 Msa0930760:CDS 40.0%
TTGCAAAGAGTGGACACTTA+AGG + chr6_2:79837100-79837119 Msa0930760:CDS 40.0%
GGACACTTAAGGTTAAGATC+AGG + chr6_2:79837111-79837130 Msa0930760:CDS 40.0%
CTTAAGGTTAAGATCAGGTG+AGG + chr6_2:79837116-79837135 Msa0930760:CDS 40.0%
TAGAAGCTGAACAACCACAA+TGG + chr6_2:79837154-79837173 Msa0930760:CDS 40.0%
CTAGAATGTAGTGCATTCAC+AGG + chr6_2:79837183-79837202 Msa0930760:CDS 40.0%
GGGAGGGTTATTATATTTGG+AGG + chr6_2:79837273-79837292 Msa0930760:CDS 40.0%
ATATTTGGAGGTTCCATTGC+AGG + chr6_2:79837285-79837304 Msa0930760:CDS 40.0%
!! ACCGTCTCAGCTATTTCTAT+TGG + chr6_2:79837317-79837336 Msa0930760:CDS 40.0%
! GGAACCACCTAAATTTGCTT+GGG + chr6_2:79837386-79837405 Msa0930760:CDS 40.0%
! GAACCACCTAAATTTGCTTG+GGG + chr6_2:79837387-79837406 Msa0930760:CDS 40.0%
CTATGACCCCAAGCAAATTT+AGG - chr6_2:79837396-79837415 None:intergenic 40.0%
AAGAGAGAGAGAGAGAGACA+TGG + chr6_2:79834925-79834944 Msa0930760:exon 45.0%
TCCCCTAGCTTCCATCTTAT+TGG + chr6_2:79835507-79835526 Msa0930760:intron 45.0%
! CAGCCGGTTCTTGCAATATA+GGG + chr6_2:79835919-79835938 Msa0930760:intron 45.0%
CTAATCTCAGACACAACGAC+TGG - chr6_2:79835980-79835999 None:intergenic 45.0%
CTCCCTTAGTCAACAGACTT+AGG + chr6_2:79836062-79836081 Msa0930760:CDS 45.0%
GGAGTCGTGACACACATAAT+AGG + chr6_2:79836109-79836128 Msa0930760:CDS 45.0%
!! CATCGATTGGTTCTGTTTGC+AGG + chr6_2:79836356-79836375 Msa0930760:CDS 45.0%
TGACAAAGAACGAGCACGTT+AGG + chr6_2:79836392-79836411 Msa0930760:CDS 45.0%
AAAAGTTACAGTTGGAGGCG+GGG + chr6_2:79836537-79836556 Msa0930760:CDS 45.0%
AATTTCAGTGCTTGTGCTGC+AGG + chr6_2:79836577-79836596 Msa0930760:CDS 45.0%
ACACTAACCCTTTGCCATTC+TGG - chr6_2:79836688-79836707 None:intergenic 45.0%
CACAGCTCATGCACAATTGA+AGG + chr6_2:79836892-79836911 Msa0930760:CDS 45.0%
!! GGCTCTAAATTGGTTGTCTC+GGG + chr6_2:79836913-79836932 Msa0930760:CDS 45.0%
TCTAAATTGGTTGTCTCGGG+CGG + chr6_2:79836916-79836935 Msa0930760:CDS 45.0%
!! TTTGGTGGACTTGCAAAGAG+TGG + chr6_2:79837090-79837109 Msa0930760:CDS 45.0%
AAGCTGAACAACCACAATGG+AGG + chr6_2:79837157-79837176 Msa0930760:CDS 45.0%
! CATTCTAGTTGCCTCCATTG+TGG - chr6_2:79837171-79837190 None:intergenic 45.0%
ACTGCAACATGATCTAGTCG+AGG - chr6_2:79837240-79837259 None:intergenic 45.0%
TTGCAGTAAGCATGCCTTGT+GGG + chr6_2:79837253-79837272 Msa0930760:CDS 45.0%
! GGGAACCACCTAAATTTGCT+TGG + chr6_2:79837385-79837404 Msa0930760:CDS 45.0%
TGACCCCAAGCAAATTTAGG+TGG - chr6_2:79837393-79837412 None:intergenic 45.0%
ATAGCACTTGTGTGGTTGGA+GGG + chr6_2:79837412-79837431 Msa0930760:CDS 45.0%
!! AGGGACTAGAGTTTTGGTGT+TGG + chr6_2:79837431-79837450 Msa0930760:CDS 45.0%
!!! GGGACTAGAGTTTTGGTGTT+GGG + chr6_2:79837432-79837451 Msa0930760:CDS 45.0%
!!! ACTAGAGTTTTGGTGTTGGG+TGG + chr6_2:79837435-79837454 Msa0930760:CDS 45.0%
TGAGTTGCATGAGTTGTGCT+TGG + chr6_2:79837485-79837504 Msa0930760:CDS 45.0%
GAGAGAGAGAGACATGGCTA+TGG + chr6_2:79834931-79834950 Msa0930760:exon 50.0%
TATCGTGCTCATGAAGCCCT+TGG + chr6_2:79835208-79835227 Msa0930760:CDS 50.0%
ATGAAGCCCTTGGTCGTAAC+TGG + chr6_2:79835218-79835237 Msa0930760:CDS 50.0%
! GCAGCCGGTTCTTGCAATAT+AGG + chr6_2:79835918-79835937 Msa0930760:intron 50.0%
ATAGGGATCCTAGAGCTCAG+AGG + chr6_2:79835936-79835955 Msa0930760:CDS 50.0%
ACAACGACTGGATCCACCAA+AGG - chr6_2:79835968-79835987 None:intergenic 50.0%
TATTGTCACGCTTGACACCG+AGG + chr6_2:79836326-79836345 Msa0930760:CDS 50.0%
ATTGTCACGCTTGACACCGA+GGG + chr6_2:79836327-79836346 Msa0930760:CDS 50.0%
CCAATCGATGCAACATCCCT+CGG - chr6_2:79836346-79836365 None:intergenic 50.0%
!! CGATTGGTTCTGTTTGCAGG+AGG + chr6_2:79836359-79836378 Msa0930760:CDS 50.0%
GAACGAGCACGTTAGGAAGA+TGG + chr6_2:79836399-79836418 Msa0930760:CDS 50.0%
TAGTAAGCTCCCGAGTCAGA+CGG - chr6_2:79836495-79836514 None:intergenic 50.0%
TCGGGAGCTTACTACTCTTG+AGG + chr6_2:79836501-79836520 Msa0930760:CDS 50.0%
CTACTCTTGAGGCTGTTTGC+TGG + chr6_2:79836512-79836531 Msa0930760:CDS 50.0%
GCACTGAAATTGCAGCGTGA+AGG - chr6_2:79836568-79836587 None:intergenic 50.0%
GTGCTTGTGCTGCAGGAAAT+AGG + chr6_2:79836584-79836603 Msa0930760:CDS 50.0%
AGGAGTGGATATGCAGCCTA+TGG + chr6_2:79836627-79836646 Msa0930760:CDS 50.0%
! TTTGGTGGATGTGGTAGGCA+AGG + chr6_2:79836775-79836794 Msa0930760:CDS 50.0%
CCGAAGACTTCCTTCCATGT+CGG - chr6_2:79836844-79836863 None:intergenic 50.0%
CCGACATGGAAGGAAGTCTT+CGG + chr6_2:79836841-79836860 Msa0930760:CDS 50.0%
CATGAGCTGTGCCAAGATCT+CGG - chr6_2:79836883-79836902 None:intergenic 50.0%
GAAGGAGGAGTCCATGAAGT+TGG - chr6_2:79837021-79837040 None:intergenic 50.0%
CTTCATGGACTCCTCCTTCT+AGG + chr6_2:79837022-79837041 Msa0930760:CDS 50.0%
TGGACTCCTCCTTCTAGGTT+AGG + chr6_2:79837027-79837046 Msa0930760:CDS 50.0%
GGACTCCTCCTTCTAGGTTA+GGG + chr6_2:79837028-79837047 Msa0930760:CDS 50.0%
AGTGAGTGCCCTAACCTAGA+AGG - chr6_2:79837039-79837058 None:intergenic 50.0%
GGGCACTCACTCTCAGTTTA+TGG + chr6_2:79837048-79837067 Msa0930760:CDS 50.0%
ACATGATCTAGTCGAGGAGG+AGG - chr6_2:79837234-79837253 None:intergenic 50.0%
GCAACATGATCTAGTCGAGG+AGG - chr6_2:79837237-79837256 None:intergenic 50.0%
GTTGCAGTAAGCATGCCTTG+TGG + chr6_2:79837252-79837271 Msa0930760:CDS 50.0%
AGTAAGCATGCCTTGTGGGA+GGG + chr6_2:79837257-79837276 Msa0930760:CDS 50.0%
CGGTGAATGAAGACCTGCAA+TGG - chr6_2:79837301-79837320 None:intergenic 50.0%
ACATTGAGGATCCTCCACGT+CGG - chr6_2:79837360-79837379 None:intergenic 50.0%
GTGGAGGATCCTCAATGTTC+CGG + chr6_2:79837362-79837381 Msa0930760:CDS 50.0%
TGGAGGATCCTCAATGTTCC+GGG + chr6_2:79837363-79837382 Msa0930760:CDS 50.0%
GCAAATTTAGGTGGTTCCCC+CGG - chr6_2:79837384-79837403 None:intergenic 50.0%
TTGGGGTCATAGCACTTGTG+TGG + chr6_2:79837404-79837423 Msa0930760:CDS 50.0%
GGTCATAGCACTTGTGTGGT+TGG + chr6_2:79837408-79837427 Msa0930760:CDS 50.0%
CATAGCACTTGTGTGGTTGG+AGG + chr6_2:79837411-79837430 Msa0930760:CDS 50.0%
! GGTTGGAGGGACTAGAGTTT+TGG + chr6_2:79837425-79837444 Msa0930760:CDS 50.0%
!! TTGGTGTTGGGTGGACATAC+CGG + chr6_2:79837444-79837463 Msa0930760:CDS 50.0%
! CCGAGGGATGTTGCATCGAT+TGG + chr6_2:79836343-79836362 Msa0930760:CDS 55.0%
GCATGGGGCAAAGAAGTGAC+AGG + chr6_2:79836433-79836452 Msa0930760:CDS 55.0%
ACGGCCCCAACCTAACTTCT+TGG - chr6_2:79836476-79836495 None:intergenic 55.0%
! AAGAGAGTGTGTGGCCCCAT+CGG - chr6_2:79836729-79836748 None:intergenic 55.0%
TGGATGCTCAACAGCCGACA+TGG + chr6_2:79836827-79836846 Msa0930760:CDS 55.0%
TGCTCAACAGCCGACATGGA+AGG + chr6_2:79836831-79836850 Msa0930760:CDS 55.0%
TGCCAAGATCTCGGAAGAGG+CGG - chr6_2:79836874-79836893 None:intergenic 55.0%
CTGTGCCAAGATCTCGGAAG+AGG - chr6_2:79836877-79836896 None:intergenic 55.0%
GAGTGCCCTAACCTAGAAGG+AGG - chr6_2:79837036-79837055 None:intergenic 55.0%
CAGTAAGCATGCCTTGTGGG+AGG + chr6_2:79837256-79837275 Msa0930760:CDS 55.0%
!! ACGTCGGTTTCTCTTCGGCA+GGG - chr6_2:79837344-79837363 None:intergenic 55.0%
!! CCTCCACGTCGGTTTCTCTT+CGG - chr6_2:79837349-79837368 None:intergenic 55.0%
GGAGGATCCTCAATGTTCCG+GGG + chr6_2:79837364-79837383 Msa0930760:CDS 55.0%
GAGGATCCTCAATGTTCCGG+GGG + chr6_2:79837365-79837384 Msa0930760:CDS 55.0%
! TGGTGTTGGGTGGACATACC+GGG + chr6_2:79837445-79837464 Msa0930760:CDS 55.0%
TGGACATACCGGGGAGGAAT+GGG + chr6_2:79837455-79837474 Msa0930760:CDS 55.0%
ATTCAGCACCCATTCCTCCC+CGG - chr6_2:79837466-79837485 None:intergenic 55.0%
GGGATCCTAGAGCTCAGAGG+CGG + chr6_2:79835939-79835958 Msa0930760:CDS 60.0%
AGCTCAGAGGCGGCATCCTT+TGG + chr6_2:79835949-79835968 Msa0930760:CDS 60.0%
TCAGAGGCGGCATCCTTTGG+TGG + chr6_2:79835952-79835971 Msa0930760:CDS 60.0%
! TAGGTTGGGGCCGTCTGACT+CGG + chr6_2:79836482-79836501 Msa0930760:CDS 60.0%
AGTGTGATATCCTCCCCGCC+CGG + chr6_2:79836703-79836722 Msa0930760:CDS 60.0%
!! CACGTCGGTTTCTCTTCGGC+AGG - chr6_2:79837345-79837364 None:intergenic 60.0%
CTGCCGAAGAGAAACCGACG+TGG + chr6_2:79837343-79837362 Msa0930760:CDS 60.0%
CCGAAGAGAAACCGACGTGG+AGG + chr6_2:79837346-79837365 Msa0930760:CDS 60.0%
GTGGTTCCCCCGGAACATTG+AGG - chr6_2:79837374-79837393 None:intergenic 60.0%
! GGTGTTGGGTGGACATACCG+GGG + chr6_2:79837446-79837465 Msa0930760:CDS 60.0%
GTGGACATACCGGGGAGGAA+TGG + chr6_2:79837454-79837473 Msa0930760:CDS 60.0%
GGATGCCGCCTCTGAGCTCT+AGG - chr6_2:79835947-79835966 None:intergenic 65.0%
CACATCTCTTCGCGCTGCCG+TGG - chr6_2:79836265-79836284 None:intergenic 65.0%
CGGCAGCGCGAAGAGATGTG+TGG + chr6_2:79836265-79836284 Msa0930760:CDS 65.0%
AGGTTGGGGCCGTCTGACTC+GGG + chr6_2:79836483-79836502 Msa0930760:CDS 65.0%
CGCCGCCTCTTCCGAGATCT+TGG + chr6_2:79836869-79836888 Msa0930760:CDS 65.0%
GTTGGGTGGACATACCGGGG+AGG + chr6_2:79837449-79837468 Msa0930760:CDS 65.0%
AGTGTGTGGCCCCATCGGCC+GGG - chr6_2:79836724-79836743 None:intergenic 70.0%
GAGTGTGTGGCCCCATCGGC+CGG - chr6_2:79836725-79836744 None:intergenic 70.0%
TCGGGCGGCTGCACAGATGC+CGG + chr6_2:79836931-79836950 Msa0930760:CDS 70.0%
TATCCTCCCCGCCCGGCCGA+TGG + chr6_2:79836710-79836729 Msa0930760:CDS 75.0%
ATCCTCCCCGCCCGGCCGAT+GGG + chr6_2:79836711-79836730 Msa0930760:CDS 75.0%
! TCCTCCCCGCCCGGCCGATG+GGG + chr6_2:79836712-79836731 Msa0930760:CDS 80.0%
! TGTGGCCCCATCGGCCGGGC+GGG - chr6_2:79836720-79836739 None:intergenic 80.0%
! GTGTGGCCCCATCGGCCGGG+CGG - chr6_2:79836721-79836740 None:intergenic 80.0%
! GTGGCCCCATCGGCCGGGCG+GGG - chr6_2:79836719-79836738 None:intergenic 85.0%
! GCCCCATCGGCCGGGCGGGG+AGG - chr6_2:79836716-79836735 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79834909 79837533 79834909 ID=Msa0930760;Name=Msa0930760
chr6_2 mRNA 79834909 79837533 79834909 ID=Msa0930760-mRNA-1;Parent=Msa0930760;Name=Msa0930760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=35|1|0.5|1|1|1|2|0|635
chr6_2 exon 79834909 79835239 79834909 ID=Msa0930760-mRNA-1:exon:13840;Parent=Msa0930760-mRNA-1
chr6_2 exon 79835922 79837533 79835922 ID=Msa0930760-mRNA-1:exon:13841;Parent=Msa0930760-mRNA-1
chr6_2 five_prime_UTR 79834909 79834943 79834909 ID=Msa0930760-mRNA-1:five_prime_utr;Parent=Msa0930760-mRNA-1
chr6_2 CDS 79834944 79835239 79834944 ID=Msa0930760-mRNA-1:cds;Parent=Msa0930760-mRNA-1
chr6_2 CDS 79835922 79837533 79835922 ID=Msa0930760-mRNA-1:cds;Parent=Msa0930760-mRNA-1
Gene Sequence

>Msa0930760

ATGGCTATGGCAAGAGATAAAAACGAAGATGAAGAAGAGGTTCATAATCAAAATCAAAAGGGTGGGAAGAGATTGAAATGCATGAACATGAAGAAGAATGAACAAGAAGAAAAGCAAGTAGTAGATGAAGAAGAAAGTGAGCTTCCATTAAAACCAGAACTTTTCTTCTACCCAACAACACCAACATCTTTTGTTGTATCAGATGCACTTGAATCAGATTTTCCAATCATTTATGTCAACAAAGTCTTTGAAATCTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTCGTAACTGCCGGTTCTTGCAATATAGGGATCCTAGAGCTCAGAGGCGGCATCCTTTGGTGGATCCAGTCGTTGTGTCTGAGATTAGAAGATGTCTTGAAGAAGGTATTGAGTTCCAAGGGGAACTTCTGAATTTCAGAAAGGATGGCACTCCCTTAGTCAACAGACTTAGGCTTACGCCAATTCATGATGATGATGGAGTCGTGACACACATAATAGGTATCCAAATCTTTTCCGAAGCAAACATAGACTTGAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAAAGTGGAAAATTATTGTACACTCCACGGCAGCGCGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCGCACAACATATTGTCACGCTTGACACCGAGGGATGTTGCATCGATTGGTTCTGTTTGCAGGAGGATCCGTCAATTGACAAAGAACGAGCACGTTAGGAAGATGGTTTGTCAAAACGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTAGGTTGGGGCCGTCTGACTCGGGAGCTTACTACTCTTGAGGCTGTTTGCTGGAAAAAAGTTACAGTTGGAGGCGGGGTTGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATAGGCTTGTATTATTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTAAATCTTGATGCTAAGAATCCAGAATGGCAAAGGGTTAGTGTGATATCCTCCCCGCCCGGCCGATGGGGCCACACACTCTCTTGCTTAAACAGTTCTTGGCTAGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTTAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCGACATGGAAGGAAGTCTTCGGTGAAGCGCCGCCTCTTCCGAGATCTTGGCACAGCTCATGCACAATTGAAGGCTCTAAATTGGTTGTCTCGGGCGGCTGCACAGATGCCGGAGTACTTCTTAGTGACACATATTTACTTGACCTCACAATAGATAATCCTACATGGAGAGAAATTCCAACTTCATGGACTCCTCCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAACCACAATGGAGGCAACTAGAATGTAGTGCATTCACAGGTTTATCAAATCAAAATGCTGTTGTACCTCCTCCTCGACTAGATCATGTTGCAGTAAGCATGCCTTGTGGGAGGGTTATTATATTTGGAGGTTCCATTGCAGGTCTTCATTCACCGTCTCAGCTATTTCTATTGGACCCTGCCGAAGAGAAACCGACGTGGAGGATCCTCAATGTTCCGGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGAGTTTTGGTGTTGGGTGGACATACCGGGGAGGAATGGGTGCTGAATGAGTTGCATGAGTTGTGCTTGGCAAGTCGACAAGACTCTGACATGTGA
Protein sequence

>Msa0930760

MAMARDKNEDEEEVHNQNQKGGKRLKCMNMKKNEQEEKQVVDEEESELPLKPELFFYPTTPTSFVVSDALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHIIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYTPRQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVISSPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGEAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPQWRQLECSAFTGLSNQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM*