AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001810 MtrunA17_Chr8g0391901 99.055 635 6 0 1 635 1 635 0.0 1298
Msa0001810 MtrunA17_Chr2g0297971 67.190 573 186 1 59 629 37 609 0.0 813
Msa0001810 MtrunA17_Chr4g0002171 27.139 409 254 15 238 611 32 431 1.22e-30 125
Msa0001810 MtrunA17_Chr2g0327561 47.273 110 49 1 63 172 158 258 2.55e-22 102
Msa0001810 MtrunA17_Chr2g0327561 35.455 110 62 1 63 172 441 541 4.58e-13 72.8
Msa0001810 MtrunA17_Chr8g0369091 35.450 189 99 5 59 246 124 290 3.12e-19 92.4
Msa0001810 MtrunA17_Chr8g0369091 35.455 110 62 1 63 172 412 512 2.82e-12 70.1
Msa0001810 MtrunA17_Chr1g0192821 29.012 324 197 15 311 629 22 317 5.08e-18 88.2
Msa0001810 MtrunA17_Chr4g0061581 29.352 293 156 18 303 572 3 267 2.27e-15 79.7
Msa0001810 MtrunA17_Chr4g0061581 32.000 175 109 6 303 472 115 284 1.07e-12 71.2
Msa0001810 MtrunA17_Chr1g0197401 27.317 205 140 5 291 491 115 314 8.60e-15 77.4
Msa0001810 MtrunA17_Chr1g0197401 25.305 328 204 14 303 614 15 317 4.22e-12 68.9
Msa0001810 MtrunA17_Chr1g0198221 30.721 319 177 20 316 615 20 313 4.00e-14 75.5
Msa0001810 MtrunA17_Chr1g0198221 29.924 264 154 11 365 618 17 259 7.87e-14 74.3
Msa0001810 MtrunA17_Chr4g0030361 33.077 130 76 2 63 190 122 242 8.63e-14 74.7
Msa0001810 MtrunA17_Chr4g0074871 29.470 302 174 18 320 611 282 554 4.33e-13 72.8
Msa0001810 MtrunA17_Chr2g0322121 28.638 213 147 4 303 512 154 364 1.06e-12 71.6
Msa0001810 MtrunA17_Chr7g0272641 27.500 200 132 6 298 491 275 467 6.20e-12 68.9
Msa0001810 MtrunA17_Chr7g0272641 26.087 345 210 17 303 630 174 490 5.38e-11 65.9
Msa0001810 MtrunA17_Chr1g0196221 26.009 223 158 6 298 517 81 299 8.65e-12 68.2
Msa0001810 MtrunA17_Chr1g0196221 26.866 268 158 11 364 611 26 275 1.81e-11 67.4
Msa0001810 MtrunA17_Chr5g0415981 34.545 110 63 1 63 172 252 352 9.45e-12 67.4
Msa0001810 MtrunA17_Chr4g0025471 27.230 213 150 4 303 512 159 369 6.81e-11 65.9
Msa0001810 MtrunA17_Chr2g0286241 25.610 328 198 16 303 619 76 368 6.94e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001810 AT1G68050.1 79.775 623 116 4 15 635 5 619 0.0 1021
Msa0001810 AT5G57360.1 65.289 605 194 4 33 629 10 606 0.0 804
Msa0001810 AT5G57360.2 65.042 595 192 4 33 619 10 596 0.0 789
Msa0001810 AT2G18915.2 62.349 579 195 5 59 629 42 605 0.0 740
Msa0001810 AT2G18915.1 61.102 581 189 7 59 629 42 595 0.0 716
Msa0001810 AT1G51550.1 26.667 405 252 16 243 611 41 436 3.15e-28 119
Msa0001810 AT5G58140.4 43.860 114 55 1 59 172 130 234 1.46e-20 96.7
Msa0001810 AT5G58140.4 33.871 124 71 2 63 184 390 504 2.07e-12 70.9
Msa0001810 AT5G58140.3 43.860 114 55 1 59 172 130 234 2.11e-20 96.7
Msa0001810 AT5G58140.3 33.871 124 71 2 63 184 390 504 2.80e-12 70.5
Msa0001810 AT5G58140.6 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0001810 AT5G58140.6 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0001810 AT5G58140.7 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0001810 AT5G58140.7 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0001810 AT5G58140.5 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0001810 AT5G58140.5 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0001810 AT5G58140.2 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0001810 AT5G58140.2 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0001810 AT5G58140.1 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0001810 AT5G58140.1 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0001810 AT3G45780.2 40.909 110 56 1 63 172 198 298 2.55e-17 86.7
Msa0001810 AT3G45780.2 32.331 133 78 2 63 195 476 596 1.51e-12 71.6
Msa0001810 AT3G45780.1 40.909 110 56 1 63 172 198 298 2.55e-17 86.7
Msa0001810 AT3G45780.1 32.331 133 78 2 63 195 476 596 1.51e-12 71.6
Msa0001810 AT2G36360.5 30.741 270 153 11 365 618 17 268 7.31e-17 84.3
Msa0001810 AT1G18610.1 32.056 287 155 18 356 625 3 266 7.76e-17 84.7
Msa0001810 AT1G18610.1 28.526 312 162 19 287 571 44 321 1.01e-14 77.8
Msa0001810 AT1G18610.2 32.056 287 155 18 356 625 3 266 7.76e-17 84.7
Msa0001810 AT1G18610.2 28.526 312 162 19 287 571 44 321 1.01e-14 77.8
Msa0001810 AT1G03445.1 28.679 265 164 11 303 557 86 335 2.23e-16 83.6
Msa0001810 AT1G03445.2 29.020 255 157 10 303 547 86 326 2.38e-16 83.6
Msa0001810 AT2G36360.3 30.189 265 152 11 365 618 17 259 1.03e-15 80.9
Msa0001810 AT2G36360.3 28.527 319 186 17 315 615 19 313 1.44e-11 67.8
Msa0001810 AT2G36360.4 30.189 265 152 11 365 618 17 259 1.06e-15 80.9
Msa0001810 AT2G36360.4 28.527 319 186 17 315 615 19 313 1.50e-11 67.8
Msa0001810 AT2G36360.2 30.189 265 152 11 365 618 17 259 1.15e-15 80.5
Msa0001810 AT2G36360.2 28.527 319 186 17 315 615 19 313 1.73e-11 67.4
Msa0001810 AT2G36360.1 30.189 265 152 11 365 618 17 259 1.15e-15 80.5
Msa0001810 AT2G36360.1 28.527 319 186 17 315 615 19 313 1.73e-11 67.4
Msa0001810 AT2G02710.2 33.636 110 64 1 63 172 260 360 1.83e-14 76.3
Msa0001810 AT2G02710.2 30.464 151 81 6 61 196 36 177 7.74e-11 65.1
Msa0001810 AT1G74150.1 28.571 266 152 14 317 572 27 264 4.72e-13 72.8
Msa0001810 AT1G74150.2 28.571 266 152 14 317 572 27 264 5.22e-13 72.4
Msa0001810 AT1G74150.3 28.571 266 152 14 317 572 27 264 5.25e-13 72.4
Msa0001810 AT5G04420.2 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0001810 AT5G04420.1 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0001810 AT5G04420.3 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0001810 AT2G02710.1 33.036 112 64 2 63 172 260 362 7.60e-13 71.2
Msa0001810 AT2G02710.1 32.743 113 66 3 61 172 36 139 8.08e-11 65.1
Msa0001810 AT1G08420.1 28.638 213 147 4 303 512 175 385 8.27e-13 72.4
Msa0001810 AT2G27210.1 28.169 213 148 4 303 512 164 374 9.70e-13 72.0
Msa0001810 AT1G08420.2 29.146 199 136 4 303 498 175 371 2.57e-12 70.9
Msa0001810 AT2G27210.2 28.643 199 137 4 303 498 164 360 3.25e-12 70.5
Msa0001810 AT5G27630.3 29.911 224 133 11 289 496 206 421 6.08e-12 69.3
Msa0001810 AT5G27630.4 29.911 224 133 11 289 496 206 421 7.00e-12 68.9
Msa0001810 AT5G27630.1 29.911 224 133 11 289 496 206 421 7.91e-12 68.9
Msa0001810 AT5G27630.2 29.911 224 133 11 289 496 206 421 1.04e-11 68.2
Msa0001810 AT2G02710.4 32.743 113 66 3 61 172 36 139 6.45e-11 64.7
Msa0001810 AT2G02710.3 30.464 151 81 6 61 196 36 177 6.71e-11 64.7

Find 181 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATAGGCTTGTATTATT+TGG 0.172159 1_1:-3530700 Msa0001810:CDS
TGTGGGAGGGTTATTATATT+TGG 0.207983 1_1:-3530028 Msa0001810:CDS
GGGCACTCACTCTCAGTTTA+TGG 0.213464 1_1:-3530250 Msa0001810:CDS
CATCGATTGGTTCTGTTTGC+AGG 0.229475 1_1:-3530942 Msa0001810:CDS
CTTCATGGACTCCTCCTTCT+AGG 0.236476 1_1:-3530276 Msa0001810:CDS
CACAATTGAAGGCTCTAAAT+TGG 0.241941 1_1:-3530395 Msa0001810:CDS
TCTCTTGCTTAAACAGTTCT+TGG 0.261051 1_1:-3530555 Msa0001810:CDS
ACACTAACCCTTTGCCATTC+TGG 0.266477 1_1:+3530613 None:intergenic
GTGCTTGTGCTGCAGGAAAT+AGG 0.284638 1_1:-3530714 Msa0001810:CDS
TGGACTCCTCCTTCTAGGTT+AGG 0.286313 1_1:-3530271 Msa0001810:CDS
CTATGACCCCAAGCAAATTT+AGG 0.308735 1_1:+3529905 None:intergenic
ACCGTCTCAGCTATTTCTAT+TGG 0.311844 1_1:-3529981 Msa0001810:CDS
TGTTTGCTTCGGAAAAGATT+TGG 0.312883 1_1:+3531163 None:intergenic
CAGCCGGTTCTTGCAATATA+GGG 0.313877 1_1:-3531379 Msa0001810:CDS
AAAGTCTTTGAAATCTCAAC+TGG 0.330143 1_1:-3532115 Msa0001810:CDS
ATATTTGGAGGTTCCATTGC+AGG 0.333382 1_1:-3530013 Msa0001810:CDS
GCAGCCGGTTCTTGCAATAT+AGG 0.345908 1_1:-3531380 Msa0001810:intron
ATCCTCCCCGCCCGGCCGAT+GGG 0.346004 1_1:-3530587 Msa0001810:CDS
AGCTCAGAGGCGGCATCCTT+TGG 0.346721 1_1:-3531349 Msa0001810:CDS
TGATGTGTTTGTGCTTGATT+TGG 0.349642 1_1:-3530491 Msa0001810:CDS
GGTTGGAGGGACTAGAGTTT+TGG 0.350009 1_1:-3529873 Msa0001810:CDS
TGTGGCCCCATCGGCCGGGC+GGG 0.357098 1_1:+3530581 None:intergenic
CTACTCTTGAGGCTGTTTGC+TGG 0.369379 1_1:-3530786 Msa0001810:CDS
GTGGAGGATCCTCAATGTTC+CGG 0.370289 1_1:-3529936 Msa0001810:CDS
ATGCAAGTCTCTCTGAAAAC+TGG 0.371445 1_1:+3531117 None:intergenic
CGCCGCCTCTTCCGAGATCT+TGG 0.372949 1_1:-3530429 Msa0001810:CDS
GTTGGGTAGAAGAAAAGTTC+TGG 0.374493 1_1:+3532202 None:intergenic
ACGGCCCCAACCTAACTTCT+TGG 0.384038 1_1:+3530825 None:intergenic
GGAGAGAAATTCCAACTTCA+TGG 0.384945 1_1:-3530291 Msa0001810:CDS
ATGAAGCCCTTGGTCGTAAC+TGG 0.387595 1_1:-3532081 Msa0001810:intron
CACGTCGGTTTCTCTTCGGC+AGG 0.391277 1_1:+3529956 None:intergenic
GGAACCACCTAAATTTGCTT+GGG 0.393741 1_1:-3529912 Msa0001810:CDS
GAGTGTGTGGCCCCATCGGC+CGG 0.399734 1_1:+3530576 None:intergenic
TGGACATACCGGGGAGGAAT+GGG 0.400686 1_1:-3529843 Msa0001810:CDS
TTGGTGTTGGGTGGACATAC+CGG 0.402125 1_1:-3529854 Msa0001810:CDS
TGGAGGATCCTCAATGTTCC+GGG 0.414753 1_1:-3529935 Msa0001810:CDS
TGGTGTTGGGTGGACATACC+GGG 0.415143 1_1:-3529853 Msa0001810:CDS
ACAAAAGATGTTGGTGTTGT+TGG 0.417028 1_1:+3532184 None:intergenic
GGAGTCGTGACACACATAAT+AGG 0.418405 1_1:-3531189 Msa0001810:CDS
TATCCTCCCCGCCCGGCCGA+TGG 0.425086 1_1:-3530588 Msa0001810:CDS
GAACTGATGACCAAGAAGTT+AGG 0.427716 1_1:-3530835 Msa0001810:CDS
CACAGCTCATGCACAATTGA+AGG 0.428020 1_1:-3530406 Msa0001810:CDS
AATTTCAGTGCTTGTGCTGC+AGG 0.430336 1_1:-3530721 Msa0001810:CDS
AGTGAGTGCCCTAACCTAGA+AGG 0.434298 1_1:+3530262 None:intergenic
TTGCAAAGAGTGGACACTTA+AGG 0.435187 1_1:-3530198 Msa0001810:CDS
GCTCGTTCTTTGTCAATTGA+CGG 0.436187 1_1:+3530914 None:intergenic
GCTAAATATTCTCCCAAAAG+TGG 0.437183 1_1:-3531075 Msa0001810:CDS
TCAGCTTTCTGATGAAGTCT+TGG 0.437833 1_1:-3531004 Msa0001810:CDS
AGGACAAAGATTCTCATGTT+TGG 0.440239 1_1:-3530226 Msa0001810:CDS
GTTCAAGTCTATGTTTGCTT+CGG 0.440669 1_1:+3531152 None:intergenic
GGGAGGGTTATTATATTTGG+AGG 0.441072 1_1:-3530025 Msa0001810:CDS
GGACTCCTCCTTCTAGGTTA+GGG 0.442999 1_1:-3530270 Msa0001810:CDS
GGTTCATAATCAAAATCAAA+AGG 0.443531 1_1:-3532317 Msa0001810:CDS
ACTCCATCATCATCATGAAT+TGG 0.445762 1_1:+3531207 None:intergenic
ACTTTGTTGACATAAATGAT+TGG 0.446777 1_1:+3532133 None:intergenic
GTGGCCCCATCGGCCGGGCG+GGG 0.447496 1_1:+3530582 None:intergenic
TAGGTTGGGGCCGTCTGACT+CGG 0.448906 1_1:-3530816 Msa0001810:CDS
GGTCATAGCACTTGTGTGGT+TGG 0.452644 1_1:-3529890 Msa0001810:CDS
TGACAAAGAACGAGCACGTT+AGG 0.454258 1_1:-3530906 Msa0001810:CDS
AGGCTCTAAATTGGTTGTCT+CGG 0.461684 1_1:-3530386 Msa0001810:CDS
GGCTCTAAATTGGTTGTCTC+GGG 0.463717 1_1:-3530385 Msa0001810:CDS
TCCTCCCCGCCCGGCCGATG+GGG 0.463860 1_1:-3530586 Msa0001810:CDS
CCGAGGGATGTTGCATCGAT+TGG 0.463890 1_1:-3530955 Msa0001810:CDS
AATAGGCTTGTATTATTTGG+AGG 0.465306 1_1:-3530697 Msa0001810:CDS
AAGCCTAAGTCTGTTGACTA+AGG 0.465707 1_1:+3531233 None:intergenic
GAACGAGCACGTTAGGAAGA+TGG 0.469272 1_1:-3530899 Msa0001810:CDS
CTTGTATTATTTGGAGGTGA+AGG 0.470299 1_1:-3530691 Msa0001810:CDS
GCCCCATCGGCCGGGCGGGG+AGG 0.477243 1_1:+3530585 None:intergenic
GATGACCAAGAAGTTAGGTT+GGG 0.477266 1_1:-3530830 Msa0001810:CDS
CAAAAGATGTTGGTGTTGTT+GGG 0.483296 1_1:+3532185 None:intergenic
GGGAACCACCTAAATTTGCT+TGG 0.486452 1_1:-3529913 Msa0001810:CDS
CACATCTCTTCGCGCTGCCG+TGG 0.487345 1_1:+3531036 None:intergenic
CTCCCTTAGTCAACAGACTT+AGG 0.488483 1_1:-3531236 Msa0001810:CDS
CATAGCACTTGTGTGGTTGG+AGG 0.488750 1_1:-3529887 Msa0001810:CDS
CCTCCACGTCGGTTTCTCTT+CGG 0.490496 1_1:+3529952 None:intergenic
ATTAGAAGATGTCTTGAAGA+AGG 0.497885 1_1:-3531303 Msa0001810:CDS
GTGGACATACCGGGGAGGAA+TGG 0.501214 1_1:-3529844 Msa0001810:CDS
GTTGGAATTTCTCTCCATGT+AGG 0.501983 1_1:+3530298 None:intergenic
GGATGCCGCCTCTGAGCTCT+AGG 0.505139 1_1:+3531354 None:intergenic
CTTCTGAATTTCAGAAAGGA+TGG 0.505201 1_1:-3531261 Msa0001810:CDS
TTGCAGTAAGCATGCCTTGT+GGG 0.506427 1_1:-3530045 Msa0001810:CDS
TGAAATTCAGAAGTTCCCCT+TGG 0.507034 1_1:+3531271 None:intergenic
GATCCCTATATTGCAAGAAC+CGG 0.508385 1_1:+3531376 None:intergenic
TTTGGTGGATGTGGTAGGCA+AGG 0.511551 1_1:-3530523 Msa0001810:CDS
GAAGGAGGAGTCCATGAAGT+TGG 0.513595 1_1:+3530280 None:intergenic
CAGTAAGCATGCCTTGTGGG+AGG 0.517765 1_1:-3530042 Msa0001810:CDS
ACAAAGATTCTCATGTTTGG+TGG 0.518883 1_1:-3530223 Msa0001810:CDS
GGAACTTCTGAATTTCAGAA+AGG 0.531302 1_1:-3531265 Msa0001810:CDS
CCGACATGGAAGGAAGTCTT+CGG 0.531353 1_1:-3530457 Msa0001810:CDS
AGATGGTTTGTCAAAACGCA+TGG 0.532902 1_1:-3530882 Msa0001810:CDS
CATTCTAGTTGCCTCCATTG+TGG 0.534438 1_1:+3530130 None:intergenic
GCAAATTTAGGTGGTTCCCC+CGG 0.536214 1_1:+3529917 None:intergenic
CAAAGAAGTGACAGGTACAT+TGG 0.538138 1_1:-3530857 Msa0001810:CDS
ATAGCACTTGTGTGGTTGGA+GGG 0.538751 1_1:-3529886 Msa0001810:CDS
AAGAGAGTGTGTGGCCCCAT+CGG 0.538839 1_1:+3530572 None:intergenic
TCGGGCGGCTGCACAGATGC+CGG 0.544982 1_1:-3530367 Msa0001810:CDS
AGGTTGGGGCCGTCTGACTC+GGG 0.545100 1_1:-3530815 Msa0001810:CDS
GTTCATAATCAAAATCAAAA+GGG 0.549520 1_1:-3532316 Msa0001810:CDS
GGACACTTAAGGTTAAGATC+AGG 0.550094 1_1:-3530187 Msa0001810:CDS
CGATTGGTTCTGTTTGCAGG+AGG 0.551211 1_1:-3530939 Msa0001810:CDS
AGGAGTGGATATGCAGCCTA+TGG 0.551520 1_1:-3530671 Msa0001810:CDS
CTAGAATGTAGTGCATTCAC+AGG 0.551583 1_1:-3530115 Msa0001810:CDS
ATCTTACCAGTTACGACCAA+GGG 0.552243 1_1:+3532075 None:intergenic
AAGAAGGTATTGAGTTCCAA+GGG 0.553691 1_1:-3531287 Msa0001810:CDS
TGATGACCAAGAAGTTAGGT+TGG 0.554354 1_1:-3530831 Msa0001810:CDS
TATCGTGCTCATGAAGCCCT+TGG 0.555109 1_1:-3532091 Msa0001810:CDS
TCAGAGGCGGCATCCTTTGG+TGG 0.557577 1_1:-3531346 Msa0001810:CDS
CATAATCAAAATCAAAAGGG+TGG 0.561242 1_1:-3532313 Msa0001810:CDS
AAAAGTTACAGTTGGAGGCG+GGG 0.563457 1_1:-3530761 Msa0001810:CDS
AGTCTCTCTGAAAACTGGAT+AGG 0.564618 1_1:+3531122 None:intergenic
ACGCCAATTCATGATGATGA+TGG 0.567655 1_1:-3531210 Msa0001810:CDS
CTGTGCCAAGATCTCGGAAG+AGG 0.567792 1_1:+3530424 None:intergenic
CTAAGAATCCAGAATGGCAA+AGG 0.567914 1_1:-3530621 Msa0001810:CDS
ACGTCGGTTTCTCTTCGGCA+GGG 0.569618 1_1:+3529957 None:intergenic
AGCCTAAGTCTGTTGACTAA+GGG 0.572540 1_1:+3531234 None:intergenic
CTAATCTCAGACACAACGAC+TGG 0.572852 1_1:+3531321 None:intergenic
AGTGTGTGGCCCCATCGGCC+GGG 0.576130 1_1:+3530577 None:intergenic
TGCTCAACAGCCGACATGGA+AGG 0.576956 1_1:-3530467 Msa0001810:CDS
CCGAAGACTTCCTTCCATGT+CGG 0.579808 1_1:+3530457 None:intergenic
AGAACAAAAGTATCATCCAT+AGG 0.580180 1_1:+3530655 None:intergenic
TCCAATAGAAATAGCTGAGA+CGG 0.580190 1_1:+3529980 None:intergenic
GATGGTTTGTCAAAACGCAT+GGG 0.583838 1_1:-3530881 Msa0001810:CDS
ATAATCAAAATCAAAAGGGT+GGG 0.584258 1_1:-3532312 Msa0001810:CDS
CCAATCGATGCAACATCCCT+CGG 0.585601 1_1:+3530955 None:intergenic
TGCCAAGATCTCGGAAGAGG+CGG 0.585827 1_1:+3530427 None:intergenic
AGTAAGCATGCCTTGTGGGA+GGG 0.586759 1_1:-3530041 Msa0001810:CDS
CGGTGAATGAAGACCTGCAA+TGG 0.588794 1_1:+3530000 None:intergenic
GTGTGGCCCCATCGGCCGGG+CGG 0.590319 1_1:+3530580 None:intergenic
CATGAGCTGTGCCAAGATCT+CGG 0.590774 1_1:+3530418 None:intergenic
TAAGAATCCAGAATGGCAAA+GGG 0.592387 1_1:-3530620 Msa0001810:CDS
GAAAATTATTGTACACTCCA+CGG 0.593713 1_1:-3531053 Msa0001810:CDS
TGAGTTGCATGAGTTGTGCT+TGG 0.594676 1_1:-3529813 Msa0001810:CDS
TGGATGCTCAACAGCCGACA+TGG 0.596002 1_1:-3530471 Msa0001810:CDS
GGTGTTGGGTGGACATACCG+GGG 0.599502 1_1:-3529852 Msa0001810:CDS
TTTGGTGGACTTGCAAAGAG+TGG 0.599541 1_1:-3530208 Msa0001810:CDS
ATTCAGCACCCATTCCTCCC+CGG 0.599838 1_1:+3529835 None:intergenic
TAGTAAGCTCCCGAGTCAGA+CGG 0.604022 1_1:+3530806 None:intergenic
ACATGATCTAGTCGAGGAGG+AGG 0.604406 1_1:+3530067 None:intergenic
TCTAAATTGGTTGTCTCGGG+CGG 0.604939 1_1:-3530382 Msa0001810:CDS
GAAGAAGGTATTGAGTTCCA+AGG 0.605857 1_1:-3531288 Msa0001810:CDS
ATTATTTGGAGGTGAAGGAG+TGG 0.606129 1_1:-3530686 Msa0001810:CDS
ATGACCAAGAAGTTAGGTTG+GGG 0.608700 1_1:-3530829 Msa0001810:CDS
GCATGGGGCAAAGAAGTGAC+AGG 0.615126 1_1:-3530865 Msa0001810:CDS
TCGGGAGCTTACTACTCTTG+AGG 0.615782 1_1:-3530797 Msa0001810:CDS
GCACTGAAATTGCAGCGTGA+AGG 0.616623 1_1:+3530733 None:intergenic
CTTAAGGTTAAGATCAGGTG+AGG 0.617307 1_1:-3530182 Msa0001810:CDS
ACTCACTCTCAGTTTATGGT+AGG 0.619329 1_1:-3530246 Msa0001810:CDS
GAGTGCCCTAACCTAGAAGG+AGG 0.621134 1_1:+3530265 None:intergenic
TTGGGGTCATAGCACTTGTG+TGG 0.623428 1_1:-3529894 Msa0001810:CDS
AGTGTGATATCCTCCCCGCC+CGG 0.623636 1_1:-3530595 Msa0001810:CDS
TCTGATACAACAAAAGATGT+TGG 0.624603 1_1:+3532175 None:intergenic
TGTGTCACTAAGAAGTACTC+CGG 0.630445 1_1:+3530348 None:intergenic
AATCTTACCAGTTACGACCA+AGG 0.632469 1_1:+3532074 None:intergenic
TGTTTAAGCAAGAGAGTGTG+TGG 0.633821 1_1:+3530563 None:intergenic
TTGATGCTAAGAATCCAGAA+TGG 0.634155 1_1:-3530627 Msa0001810:CDS
GAACCACCTAAATTTGCTTG+GGG 0.636271 1_1:-3529911 Msa0001810:CDS
GGAGGATCCTCAATGTTCCG+GGG 0.639537 1_1:-3529934 Msa0001810:CDS
TGACCCCAAGCAAATTTAGG+TGG 0.642462 1_1:+3529908 None:intergenic
ATTGTCACGCTTGACACCGA+GGG 0.643189 1_1:-3530971 Msa0001810:CDS
TCACAATAGATAATCCTACA+TGG 0.646440 1_1:-3530312 Msa0001810:CDS
CCGAAGAGAAACCGACGTGG+AGG 0.652010 1_1:-3529952 Msa0001810:CDS
ATGTAGGATTATCTATTGTG+AGG 0.656684 1_1:+3530314 None:intergenic
AAGCTGAACAACCACAATGG+AGG 0.657091 1_1:-3530141 Msa0001810:CDS
AATATAATAACCCTCCCACA+AGG 0.660973 1_1:+3530031 None:intergenic
CGGCAGCGCGAAGAGATGTG+TGG 0.661003 1_1:-3531033 Msa0001810:CDS
ACAACGACTGGATCCACCAA+AGG 0.667336 1_1:+3531333 None:intergenic
GAGGATCCTCAATGTTCCGG+GGG 0.669777 1_1:-3529933 Msa0001810:CDS
ATGGTTTGTCAAAACGCATG+GGG 0.675604 1_1:-3530880 Msa0001810:CDS
TAGAAGCTGAACAACCACAA+TGG 0.675759 1_1:-3530144 Msa0001810:CDS
AAGTCTTTGAAATCTCAACT+GGG 0.680191 1_1:-3532114 Msa0001810:CDS
ACTGCAACATGATCTAGTCG+AGG 0.685428 1_1:+3530061 None:intergenic
GCAACATGATCTAGTCGAGG+AGG 0.692964 1_1:+3530064 None:intergenic
GGGATCCTAGAGCTCAGAGG+CGG 0.695636 1_1:-3531359 Msa0001810:CDS
TGAAAACTGGATAGGAAACA+CGG 0.696786 1_1:+3531130 None:intergenic
GTTGCAGTAAGCATGCCTTG+TGG 0.698959 1_1:-3530046 Msa0001810:CDS
CTGCCGAAGAGAAACCGACG+TGG 0.709608 1_1:-3529955 Msa0001810:CDS
TATTGTCACGCTTGACACCG+AGG 0.711160 1_1:-3530972 Msa0001810:CDS
ATAGGGATCCTAGAGCTCAG+AGG 0.719677 1_1:-3531362 Msa0001810:CDS
GTTGGGTGGACATACCGGGG+AGG 0.725055 1_1:-3529849 Msa0001810:CDS
AGAAGGTATTGAGTTCCAAG+GGG 0.731475 1_1:-3531286 Msa0001810:CDS
ACATTGAGGATCCTCCACGT+CGG 0.754895 1_1:+3529941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATCTTTTTTATTGATTTA+AGG - chr1_1:3530161-3530180 Msa0001810:CDS 10.0%
!! AAAAATAAAATTTGAGAAAT+AGG + chr1_1:3530443-3530462 None:intergenic 10.0%
!!! GGTTTTTTTTTTTTAGTTTA+AGG + chr1_1:3530240-3530259 None:intergenic 15.0%
!! TTATTTATTATCCAATAAGA+TGG + chr1_1:3530400-3530419 None:intergenic 15.0%
!! AAAGAAATATCTTGTAAAAA+AGG + chr1_1:3530710-3530729 None:intergenic 15.0%
!!! TTCTTTTAGATATTTTGATT+TGG - chr1_1:3530724-3530743 Msa0001810:CDS 15.0%
!! GTTCATAATCAAAATCAAAA+GGG - chr1_1:3529861-3529880 Msa0001810:CDS 20.0%
!!! CTTTTTTATTGATTTAAGGT+TGG - chr1_1:3530165-3530184 Msa0001810:CDS 20.0%
!!! TTTTTTAGTTTAAGGAAAGT+GGG + chr1_1:3530232-3530251 None:intergenic 20.0%
!!! TTTTTTTAGTTTAAGGAAAG+TGG + chr1_1:3530233-3530252 None:intergenic 20.0%
!!! AAAAAAACCCTTTTATCAAA+CGG - chr1_1:3530251-3530270 Msa0001810:CDS 20.0%
!! TTTGCAAAATGAAACAAAAT+TGG + chr1_1:3530329-3530348 None:intergenic 20.0%
!!! AAGTTTATTTTCCATTCTAT+TGG - chr1_1:3530479-3530498 Msa0001810:CDS 20.0%
!! AAAATGTTAAACCAATAGAA+TGG + chr1_1:3530493-3530512 None:intergenic 20.0%
!! AGTACTTTCCATAATAATTA+AGG - chr1_1:3530550-3530569 Msa0001810:CDS 20.0%
!! TTGATGAACCTTAATTATTA+TGG + chr1_1:3530561-3530580 None:intergenic 20.0%
!! AATACCAAATATAACCAAAA+AGG + chr1_1:3530681-3530700 None:intergenic 20.0%
!!! TACAATAATTTTCCACTTTT+GGG + chr1_1:3531117-3531136 None:intergenic 20.0%
! GGTTCATAATCAAAATCAAA+AGG - chr1_1:3529860-3529879 Msa0001810:CDS 25.0%
! ATAATCAAAATCAAAAGGGT+GGG - chr1_1:3529865-3529884 Msa0001810:CDS 25.0%
!!! AAGAAAAGTTCTGGTTTTAA+TGG + chr1_1:3529969-3529988 None:intergenic 25.0%
! ACTTTGTTGACATAAATGAT+TGG + chr1_1:3530047-3530066 None:intergenic 25.0%
!! TTCTTGCATCATAATTTTGT+TGG - chr1_1:3530135-3530154 Msa0001810:CDS 25.0%
!! TCTTGCATCATAATTTTGTT+GGG - chr1_1:3530136-3530155 Msa0001810:CDS 25.0%
!! ATTTTCACCGTTTGATAAAA+GGG + chr1_1:3530261-3530280 None:intergenic 25.0%
!! GAATGGATTCTATAAAAATG+TGG + chr1_1:3530352-3530371 None:intergenic 25.0%
! GGAATCAAAATTAGAAAGAA+TGG + chr1_1:3530369-3530388 None:intergenic 25.0%
!!! AGAAATTCTAAAGCAATTAG+AGG + chr1_1:3530770-3530789 None:intergenic 25.0%
!! GTACAATAATTTTCCACTTT+TGG + chr1_1:3531118-3531137 None:intergenic 25.0%
TAAAAACGAAGATGAAGAAG+AGG - chr1_1:3529839-3529858 Msa0001810:CDS 30.0%
CATAATCAAAATCAAAAGGG+TGG - chr1_1:3529864-3529883 Msa0001810:CDS 30.0%
TCTGATACAACAAAAGATGT+TGG + chr1_1:3530005-3530024 None:intergenic 30.0%
!! AAAGTCTTTGAAATCTCAAC+TGG - chr1_1:3530062-3530081 Msa0001810:CDS 30.0%
!! AAGTCTTTGAAATCTCAACT+GGG - chr1_1:3530063-3530082 Msa0001810:CDS 30.0%
! CTTGCATCATAATTTTGTTG+GGG - chr1_1:3530137-3530156 Msa0001810:CDS 30.0%
! CATTTTCACCGTTTGATAAA+AGG + chr1_1:3530262-3530281 None:intergenic 30.0%
TAGTATAGATCTGAAAGGAA+TGG + chr1_1:3530288-3530307 None:intergenic 30.0%
CAACATAGTATAGATCTGAA+AGG + chr1_1:3530293-3530312 None:intergenic 30.0%
!! GGTTTAACATTTTGACAACA+TGG - chr1_1:3530500-3530519 Msa0001810:CDS 30.0%
!! ATTTTGACAACATGGTTACT+TGG - chr1_1:3530508-3530527 Msa0001810:CDS 30.0%
ACTCTCATAGAATCAATGAT+AGG - chr1_1:3530648-3530667 Msa0001810:CDS 30.0%
CTCTCATAGAATCAATGATA+GGG - chr1_1:3530649-3530668 Msa0001810:CDS 30.0%
!!! CTGTCCTTTTTGGTTATATT+TGG - chr1_1:3530674-3530693 Msa0001810:CDS 30.0%
ATTAGAAGATGTCTTGAAGA+AGG - chr1_1:3530874-3530893 Msa0001810:CDS 30.0%
GAAAATTATTGTACACTCCA+CGG - chr1_1:3531124-3531143 Msa0001810:CDS 30.0%
GGAAATAGGCTTGTATTATT+TGG - chr1_1:3531477-3531496 Msa0001810:intron 30.0%
AATAGGCTTGTATTATTTGG+AGG - chr1_1:3531480-3531499 Msa0001810:intron 30.0%
!! AGAACAAAAGTATCATCCAT+AGG + chr1_1:3531525-3531544 None:intergenic 30.0%
ATGTAGGATTATCTATTGTG+AGG + chr1_1:3531866-3531885 None:intergenic 30.0%
TCACAATAGATAATCCTACA+TGG - chr1_1:3531865-3531884 Msa0001810:intron 30.0%
!! CAAAAGATGTTGGTGTTGTT+GGG + chr1_1:3529995-3530014 None:intergenic 35.0%
!! ACAAAAGATGTTGGTGTTGT+TGG + chr1_1:3529996-3530015 None:intergenic 35.0%
ATCCAATAAGATGGAAGCTA+GGG + chr1_1:3530391-3530410 None:intergenic 35.0%
TATCCAATAAGATGGAAGCT+AGG + chr1_1:3530392-3530411 None:intergenic 35.0%
!! GAATTTCTTTTGTTTGCAGC+CGG - chr1_1:3530782-3530801 Msa0001810:CDS 35.0%
!! AAGAAGGTATTGAGTTCCAA+GGG - chr1_1:3530890-3530909 Msa0001810:CDS 35.0%
GGAACTTCTGAATTTCAGAA+AGG - chr1_1:3530912-3530931 Msa0001810:CDS 35.0%
CTTCTGAATTTCAGAAAGGA+TGG - chr1_1:3530916-3530935 Msa0001810:CDS 35.0%
ACTCCATCATCATCATGAAT+TGG + chr1_1:3530973-3530992 None:intergenic 35.0%
TGTTTGCTTCGGAAAAGATT+TGG + chr1_1:3531017-3531036 None:intergenic 35.0%
GTTCAAGTCTATGTTTGCTT+CGG + chr1_1:3531028-3531047 None:intergenic 35.0%
TGAAAACTGGATAGGAAACA+CGG + chr1_1:3531050-3531069 None:intergenic 35.0%
GCTAAATATTCTCCCAAAAG+TGG - chr1_1:3531102-3531121 Msa0001810:CDS 35.0%
TGCTGGAAAAAAGTTACAGT+TGG - chr1_1:3531408-3531427 Msa0001810:intron 35.0%
TGGAAAAAAGTTACAGTTGG+AGG - chr1_1:3531411-3531430 Msa0001810:intron 35.0%
AAAAAAGTTACAGTTGGAGG+CGG - chr1_1:3531414-3531433 Msa0001810:intron 35.0%
CTTGTATTATTTGGAGGTGA+AGG - chr1_1:3531486-3531505 Msa0001810:intron 35.0%
TTGATGCTAAGAATCCAGAA+TGG - chr1_1:3531550-3531569 Msa0001810:intron 35.0%
TAAGAATCCAGAATGGCAAA+GGG - chr1_1:3531557-3531576 Msa0001810:intron 35.0%
TCTCTTGCTTAAACAGTTCT+TGG - chr1_1:3531622-3531641 Msa0001810:intron 35.0%
!! AGTTCTTGGCTAGTTGTTTT+TGG - chr1_1:3531636-3531655 Msa0001810:intron 35.0%
TGATGTGTTTGTGCTTGATT+TGG - chr1_1:3531686-3531705 Msa0001810:intron 35.0%
!! CACAATTGAAGGCTCTAAAT+TGG - chr1_1:3531782-3531801 Msa0001810:intron 35.0%
AGGACAAAGATTCTCATGTT+TGG - chr1_1:3531951-3531970 Msa0001810:intron 35.0%
ACAAAGATTCTCATGTTTGG+TGG - chr1_1:3531954-3531973 Msa0001810:intron 35.0%
AATATAATAACCCTCCCACA+AGG + chr1_1:3532149-3532168 None:intergenic 35.0%
TGTGGGAGGGTTATTATATT+TGG - chr1_1:3532149-3532168 Msa0001810:CDS 35.0%
TCCAATAGAAATAGCTGAGA+CGG + chr1_1:3532200-3532219 None:intergenic 35.0%
GTTGGGTAGAAGAAAAGTTC+TGG + chr1_1:3529978-3529997 None:intergenic 40.0%
ATCTTACCAGTTACGACCAA+GGG + chr1_1:3530105-3530124 None:intergenic 40.0%
AATCTTACCAGTTACGACCA+AGG + chr1_1:3530106-3530125 None:intergenic 40.0%
TCCAATAAGATGGAAGCTAG+GGG + chr1_1:3530390-3530409 None:intergenic 40.0%
! TGATAGGGAACTGTCCTTTT+TGG - chr1_1:3530664-3530683 Msa0001810:CDS 40.0%
GATCCCTATATTGCAAGAAC+CGG + chr1_1:3530804-3530823 None:intergenic 40.0%
!! GAAGAAGGTATTGAGTTCCA+AGG - chr1_1:3530889-3530908 Msa0001810:CDS 40.0%
!! AGAAGGTATTGAGTTCCAAG+GGG - chr1_1:3530891-3530910 Msa0001810:CDS 40.0%
TGAAATTCAGAAGTTCCCCT+TGG + chr1_1:3530909-3530928 None:intergenic 40.0%
! AGCCTAAGTCTGTTGACTAA+GGG + chr1_1:3530946-3530965 None:intergenic 40.0%
! AAGCCTAAGTCTGTTGACTA+AGG + chr1_1:3530947-3530966 None:intergenic 40.0%
! ACGCCAATTCATGATGATGA+TGG - chr1_1:3530967-3530986 Msa0001810:CDS 40.0%
! AGTCTCTCTGAAAACTGGAT+AGG + chr1_1:3531058-3531077 None:intergenic 40.0%
! ATGCAAGTCTCTCTGAAAAC+TGG + chr1_1:3531063-3531082 None:intergenic 40.0%
TCAGCTTTCTGATGAAGTCT+TGG - chr1_1:3531173-3531192 Msa0001810:CDS 40.0%
GCTCGTTCTTTGTCAATTGA+CGG + chr1_1:3531266-3531285 None:intergenic 40.0%
! AGATGGTTTGTCAAAACGCA+TGG - chr1_1:3531295-3531314 Msa0001810:CDS 40.0%
! GATGGTTTGTCAAAACGCAT+GGG - chr1_1:3531296-3531315 Msa0001810:CDS 40.0%
! ATGGTTTGTCAAAACGCATG+GGG - chr1_1:3531297-3531316 Msa0001810:CDS 40.0%
CAAAGAAGTGACAGGTACAT+TGG - chr1_1:3531320-3531339 Msa0001810:CDS 40.0%
GAACTGATGACCAAGAAGTT+AGG - chr1_1:3531342-3531361 Msa0001810:CDS 40.0%
TGATGACCAAGAAGTTAGGT+TGG - chr1_1:3531346-3531365 Msa0001810:CDS 40.0%
GATGACCAAGAAGTTAGGTT+GGG - chr1_1:3531347-3531366 Msa0001810:CDS 40.0%
! ATGACCAAGAAGTTAGGTTG+GGG - chr1_1:3531348-3531367 Msa0001810:CDS 40.0%
AAAAAGTTACAGTTGGAGGC+GGG - chr1_1:3531415-3531434 Msa0001810:intron 40.0%
ATTATTTGGAGGTGAAGGAG+TGG - chr1_1:3531491-3531510 Msa0001810:intron 40.0%
CTAAGAATCCAGAATGGCAA+AGG - chr1_1:3531556-3531575 Msa0001810:intron 40.0%
! TGTTTAAGCAAGAGAGTGTG+TGG + chr1_1:3531617-3531636 None:intergenic 40.0%
!!! TCTTGGCTAGTTGTTTTTGG+TGG - chr1_1:3531639-3531658 Msa0001810:intron 40.0%
!!! CTAGTTGTTTTTGGTGGATG+TGG - chr1_1:3531645-3531664 Msa0001810:intron 40.0%
!!! TTGTTTTTGGTGGATGTGGT+AGG - chr1_1:3531649-3531668 Msa0001810:intron 40.0%
!! AGGCTCTAAATTGGTTGTCT+CGG - chr1_1:3531791-3531810 Msa0001810:intron 40.0%
!! TGTGTCACTAAGAAGTACTC+CGG + chr1_1:3531832-3531851 None:intergenic 40.0%
GTTGGAATTTCTCTCCATGT+AGG + chr1_1:3531882-3531901 None:intergenic 40.0%
GGAGAGAAATTCCAACTTCA+TGG - chr1_1:3531886-3531905 Msa0001810:intron 40.0%
ACTCACTCTCAGTTTATGGT+AGG - chr1_1:3531931-3531950 Msa0001810:intron 40.0%
TTGCAAAGAGTGGACACTTA+AGG - chr1_1:3531979-3531998 Msa0001810:intron 40.0%
GGACACTTAAGGTTAAGATC+AGG - chr1_1:3531990-3532009 Msa0001810:intron 40.0%
CTTAAGGTTAAGATCAGGTG+AGG - chr1_1:3531995-3532014 Msa0001810:intron 40.0%
TAGAAGCTGAACAACCACAA+TGG - chr1_1:3532033-3532052 Msa0001810:intron 40.0%
CTAGAATGTAGTGCATTCAC+AGG - chr1_1:3532062-3532081 Msa0001810:intron 40.0%
GGGAGGGTTATTATATTTGG+AGG - chr1_1:3532152-3532171 Msa0001810:CDS 40.0%
ATATTTGGAGGTTCCATTGC+AGG - chr1_1:3532164-3532183 Msa0001810:CDS 40.0%
!! ACCGTCTCAGCTATTTCTAT+TGG - chr1_1:3532196-3532215 Msa0001810:CDS 40.0%
! GGAACCACCTAAATTTGCTT+GGG - chr1_1:3532265-3532284 Msa0001810:CDS 40.0%
! GAACCACCTAAATTTGCTTG+GGG - chr1_1:3532266-3532285 Msa0001810:CDS 40.0%
CTATGACCCCAAGCAAATTT+AGG + chr1_1:3532275-3532294 None:intergenic 40.0%
TCCCCTAGCTTCCATCTTAT+TGG - chr1_1:3530386-3530405 Msa0001810:CDS 45.0%
! CAGCCGGTTCTTGCAATATA+GGG - chr1_1:3530798-3530817 Msa0001810:CDS 45.0%
CTAATCTCAGACACAACGAC+TGG + chr1_1:3530859-3530878 None:intergenic 45.0%
CTCCCTTAGTCAACAGACTT+AGG - chr1_1:3530941-3530960 Msa0001810:CDS 45.0%
GGAGTCGTGACACACATAAT+AGG - chr1_1:3530988-3531007 Msa0001810:CDS 45.0%
!! CATCGATTGGTTCTGTTTGC+AGG - chr1_1:3531235-3531254 Msa0001810:CDS 45.0%
TGACAAAGAACGAGCACGTT+AGG - chr1_1:3531271-3531290 Msa0001810:CDS 45.0%
AAAAGTTACAGTTGGAGGCG+GGG - chr1_1:3531416-3531435 Msa0001810:intron 45.0%
AATTTCAGTGCTTGTGCTGC+AGG - chr1_1:3531456-3531475 Msa0001810:intron 45.0%
ACACTAACCCTTTGCCATTC+TGG + chr1_1:3531567-3531586 None:intergenic 45.0%
CACAGCTCATGCACAATTGA+AGG - chr1_1:3531771-3531790 Msa0001810:intron 45.0%
!! GGCTCTAAATTGGTTGTCTC+GGG - chr1_1:3531792-3531811 Msa0001810:intron 45.0%
TCTAAATTGGTTGTCTCGGG+CGG - chr1_1:3531795-3531814 Msa0001810:intron 45.0%
!! TTTGGTGGACTTGCAAAGAG+TGG - chr1_1:3531969-3531988 Msa0001810:intron 45.0%
AAGCTGAACAACCACAATGG+AGG - chr1_1:3532036-3532055 Msa0001810:intron 45.0%
! CATTCTAGTTGCCTCCATTG+TGG + chr1_1:3532050-3532069 None:intergenic 45.0%
ACTGCAACATGATCTAGTCG+AGG + chr1_1:3532119-3532138 None:intergenic 45.0%
TTGCAGTAAGCATGCCTTGT+GGG - chr1_1:3532132-3532151 Msa0001810:CDS 45.0%
! GGGAACCACCTAAATTTGCT+TGG - chr1_1:3532264-3532283 Msa0001810:CDS 45.0%
TGACCCCAAGCAAATTTAGG+TGG + chr1_1:3532272-3532291 None:intergenic 45.0%
ATAGCACTTGTGTGGTTGGA+GGG - chr1_1:3532291-3532310 Msa0001810:CDS 45.0%
!! AGGGACTAGAGTTTTGGTGT+TGG - chr1_1:3532310-3532329 Msa0001810:CDS 45.0%
!!! GGGACTAGAGTTTTGGTGTT+GGG - chr1_1:3532311-3532330 Msa0001810:CDS 45.0%
!!! ACTAGAGTTTTGGTGTTGGG+TGG - chr1_1:3532314-3532333 Msa0001810:CDS 45.0%
TGAGTTGCATGAGTTGTGCT+TGG - chr1_1:3532364-3532383 Msa0001810:exon 45.0%
GAGAGAGAGAGAGAGAGACA+TGG - chr1_1:3529803-3529822 Msa0001810:CDS 50.0%
GAGAGAGAGAGACATGGCTA+TGG - chr1_1:3529809-3529828 Msa0001810:CDS 50.0%
TATCGTGCTCATGAAGCCCT+TGG - chr1_1:3530086-3530105 Msa0001810:CDS 50.0%
ATGAAGCCCTTGGTCGTAAC+TGG - chr1_1:3530096-3530115 Msa0001810:CDS 50.0%
! GCAGCCGGTTCTTGCAATAT+AGG - chr1_1:3530797-3530816 Msa0001810:CDS 50.0%
ATAGGGATCCTAGAGCTCAG+AGG - chr1_1:3530815-3530834 Msa0001810:CDS 50.0%
ACAACGACTGGATCCACCAA+AGG + chr1_1:3530847-3530866 None:intergenic 50.0%
TATTGTCACGCTTGACACCG+AGG - chr1_1:3531205-3531224 Msa0001810:CDS 50.0%
ATTGTCACGCTTGACACCGA+GGG - chr1_1:3531206-3531225 Msa0001810:CDS 50.0%
CCAATCGATGCAACATCCCT+CGG + chr1_1:3531225-3531244 None:intergenic 50.0%
!! CGATTGGTTCTGTTTGCAGG+AGG - chr1_1:3531238-3531257 Msa0001810:CDS 50.0%
GAACGAGCACGTTAGGAAGA+TGG - chr1_1:3531278-3531297 Msa0001810:CDS 50.0%
TAGTAAGCTCCCGAGTCAGA+CGG + chr1_1:3531374-3531393 None:intergenic 50.0%
TCGGGAGCTTACTACTCTTG+AGG - chr1_1:3531380-3531399 Msa0001810:intron 50.0%
CTACTCTTGAGGCTGTTTGC+TGG - chr1_1:3531391-3531410 Msa0001810:intron 50.0%
GCACTGAAATTGCAGCGTGA+AGG + chr1_1:3531447-3531466 None:intergenic 50.0%
GTGCTTGTGCTGCAGGAAAT+AGG - chr1_1:3531463-3531482 Msa0001810:intron 50.0%
AGGAGTGGATATGCAGCCTA+TGG - chr1_1:3531506-3531525 Msa0001810:intron 50.0%
! TTTGGTGGATGTGGTAGGCA+AGG - chr1_1:3531654-3531673 Msa0001810:intron 50.0%
CCGAAGACTTCCTTCCATGT+CGG + chr1_1:3531723-3531742 None:intergenic 50.0%
CCGACATGGAAGGAAGTCTT+CGG - chr1_1:3531720-3531739 Msa0001810:intron 50.0%
CATGAGCTGTGCCAAGATCT+CGG + chr1_1:3531762-3531781 None:intergenic 50.0%
GAAGGAGGAGTCCATGAAGT+TGG + chr1_1:3531900-3531919 None:intergenic 50.0%
CTTCATGGACTCCTCCTTCT+AGG - chr1_1:3531901-3531920 Msa0001810:intron 50.0%
TGGACTCCTCCTTCTAGGTT+AGG - chr1_1:3531906-3531925 Msa0001810:intron 50.0%
GGACTCCTCCTTCTAGGTTA+GGG - chr1_1:3531907-3531926 Msa0001810:intron 50.0%
AGTGAGTGCCCTAACCTAGA+AGG + chr1_1:3531918-3531937 None:intergenic 50.0%
GGGCACTCACTCTCAGTTTA+TGG - chr1_1:3531927-3531946 Msa0001810:intron 50.0%
ACATGATCTAGTCGAGGAGG+AGG + chr1_1:3532113-3532132 None:intergenic 50.0%
GCAACATGATCTAGTCGAGG+AGG + chr1_1:3532116-3532135 None:intergenic 50.0%
GTTGCAGTAAGCATGCCTTG+TGG - chr1_1:3532131-3532150 Msa0001810:CDS 50.0%
AGTAAGCATGCCTTGTGGGA+GGG - chr1_1:3532136-3532155 Msa0001810:CDS 50.0%
CGGTGAATGAAGACCTGCAA+TGG + chr1_1:3532180-3532199 None:intergenic 50.0%
ACATTGAGGATCCTCCACGT+CGG + chr1_1:3532239-3532258 None:intergenic 50.0%
GTGGAGGATCCTCAATGTTC+CGG - chr1_1:3532241-3532260 Msa0001810:CDS 50.0%
TGGAGGATCCTCAATGTTCC+GGG - chr1_1:3532242-3532261 Msa0001810:CDS 50.0%
GCAAATTTAGGTGGTTCCCC+CGG + chr1_1:3532263-3532282 None:intergenic 50.0%
TTGGGGTCATAGCACTTGTG+TGG - chr1_1:3532283-3532302 Msa0001810:CDS 50.0%
GGTCATAGCACTTGTGTGGT+TGG - chr1_1:3532287-3532306 Msa0001810:CDS 50.0%
CATAGCACTTGTGTGGTTGG+AGG - chr1_1:3532290-3532309 Msa0001810:CDS 50.0%
! GGTTGGAGGGACTAGAGTTT+TGG - chr1_1:3532304-3532323 Msa0001810:CDS 50.0%
!! TTGGTGTTGGGTGGACATAC+CGG - chr1_1:3532323-3532342 Msa0001810:CDS 50.0%
! CCGAGGGATGTTGCATCGAT+TGG - chr1_1:3531222-3531241 Msa0001810:CDS 55.0%
GCATGGGGCAAAGAAGTGAC+AGG - chr1_1:3531312-3531331 Msa0001810:CDS 55.0%
ACGGCCCCAACCTAACTTCT+TGG + chr1_1:3531355-3531374 None:intergenic 55.0%
! AAGAGAGTGTGTGGCCCCAT+CGG + chr1_1:3531608-3531627 None:intergenic 55.0%
TGGATGCTCAACAGCCGACA+TGG - chr1_1:3531706-3531725 Msa0001810:intron 55.0%
TGCTCAACAGCCGACATGGA+AGG - chr1_1:3531710-3531729 Msa0001810:intron 55.0%
TGCCAAGATCTCGGAAGAGG+CGG + chr1_1:3531753-3531772 None:intergenic 55.0%
CTGTGCCAAGATCTCGGAAG+AGG + chr1_1:3531756-3531775 None:intergenic 55.0%
GAGTGCCCTAACCTAGAAGG+AGG + chr1_1:3531915-3531934 None:intergenic 55.0%
CAGTAAGCATGCCTTGTGGG+AGG - chr1_1:3532135-3532154 Msa0001810:CDS 55.0%
!! ACGTCGGTTTCTCTTCGGCA+GGG + chr1_1:3532223-3532242 None:intergenic 55.0%
!! CCTCCACGTCGGTTTCTCTT+CGG + chr1_1:3532228-3532247 None:intergenic 55.0%
GGAGGATCCTCAATGTTCCG+GGG - chr1_1:3532243-3532262 Msa0001810:CDS 55.0%
GAGGATCCTCAATGTTCCGG+GGG - chr1_1:3532244-3532263 Msa0001810:CDS 55.0%
! TGGTGTTGGGTGGACATACC+GGG - chr1_1:3532324-3532343 Msa0001810:CDS 55.0%
TGGACATACCGGGGAGGAAT+GGG - chr1_1:3532334-3532353 Msa0001810:CDS 55.0%
ATTCAGCACCCATTCCTCCC+CGG + chr1_1:3532345-3532364 None:intergenic 55.0%
GGGATCCTAGAGCTCAGAGG+CGG - chr1_1:3530818-3530837 Msa0001810:CDS 60.0%
AGCTCAGAGGCGGCATCCTT+TGG - chr1_1:3530828-3530847 Msa0001810:CDS 60.0%
TCAGAGGCGGCATCCTTTGG+TGG - chr1_1:3530831-3530850 Msa0001810:CDS 60.0%
! TAGGTTGGGGCCGTCTGACT+CGG - chr1_1:3531361-3531380 Msa0001810:CDS 60.0%
AGTGTGATATCCTCCCCGCC+CGG - chr1_1:3531582-3531601 Msa0001810:intron 60.0%
!! CACGTCGGTTTCTCTTCGGC+AGG + chr1_1:3532224-3532243 None:intergenic 60.0%
CTGCCGAAGAGAAACCGACG+TGG - chr1_1:3532222-3532241 Msa0001810:CDS 60.0%
CCGAAGAGAAACCGACGTGG+AGG - chr1_1:3532225-3532244 Msa0001810:CDS 60.0%
GTGGTTCCCCCGGAACATTG+AGG + chr1_1:3532253-3532272 None:intergenic 60.0%
! GGTGTTGGGTGGACATACCG+GGG - chr1_1:3532325-3532344 Msa0001810:CDS 60.0%
GTGGACATACCGGGGAGGAA+TGG - chr1_1:3532333-3532352 Msa0001810:CDS 60.0%
GGATGCCGCCTCTGAGCTCT+AGG + chr1_1:3530826-3530845 None:intergenic 65.0%
CACATCTCTTCGCGCTGCCG+TGG + chr1_1:3531144-3531163 None:intergenic 65.0%
CGGCAGCGCGAAGAGATGTG+TGG - chr1_1:3531144-3531163 Msa0001810:CDS 65.0%
AGGTTGGGGCCGTCTGACTC+GGG - chr1_1:3531362-3531381 Msa0001810:CDS 65.0%
CGCCGCCTCTTCCGAGATCT+TGG - chr1_1:3531748-3531767 Msa0001810:intron 65.0%
GTTGGGTGGACATACCGGGG+AGG - chr1_1:3532328-3532347 Msa0001810:CDS 65.0%
AGTGTGTGGCCCCATCGGCC+GGG + chr1_1:3531603-3531622 None:intergenic 70.0%
GAGTGTGTGGCCCCATCGGC+CGG + chr1_1:3531604-3531623 None:intergenic 70.0%
TCGGGCGGCTGCACAGATGC+CGG - chr1_1:3531810-3531829 Msa0001810:intron 70.0%
TATCCTCCCCGCCCGGCCGA+TGG - chr1_1:3531589-3531608 Msa0001810:intron 75.0%
ATCCTCCCCGCCCGGCCGAT+GGG - chr1_1:3531590-3531609 Msa0001810:intron 75.0%
! TCCTCCCCGCCCGGCCGATG+GGG - chr1_1:3531591-3531610 Msa0001810:intron 80.0%
! TGTGGCCCCATCGGCCGGGC+GGG + chr1_1:3531599-3531618 None:intergenic 80.0%
! GTGTGGCCCCATCGGCCGGG+CGG + chr1_1:3531600-3531619 None:intergenic 80.0%
! GTGGCCCCATCGGCCGGGCG+GGG + chr1_1:3531598-3531617 None:intergenic 85.0%
! GCCCCATCGGCCGGGCGGGG+AGG + chr1_1:3531595-3531614 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3529787 3532412 3529787 ID=Msa0001810;Name=Msa0001810
chr1_1 mRNA 3529787 3532412 3529787 ID=Msa0001810-mRNA-1;Parent=Msa0001810;Name=Msa0001810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=35|1|0.5|1|1|1|2|0|635
chr1_1 exon 3529787 3531398 3529787 ID=Msa0001810-mRNA-1:exon:1017;Parent=Msa0001810-mRNA-1
chr1_1 exon 3532082 3532412 3532082 ID=Msa0001810-mRNA-1:exon:1016;Parent=Msa0001810-mRNA-1
chr1_1 five_prime_UTR 3532378 3532412 3532378 ID=Msa0001810-mRNA-1:five_prime_utr;Parent=Msa0001810-mRNA-1
chr1_1 CDS 3532082 3532377 3532082 ID=Msa0001810-mRNA-1:cds;Parent=Msa0001810-mRNA-1
chr1_1 CDS 3529787 3531398 3529787 ID=Msa0001810-mRNA-1:cds;Parent=Msa0001810-mRNA-1
Gene Sequence

>Msa0001810

ATGGCTATGGCAAGAGATAAAAACGAAGATGAAGAAGAGGTTCATAATCAAAATCAAAAGGGTGGGAAGAGATTGAAATGCATGAACATGAAGAAGAATGAACAAGAAGAAAAGCAAGTAGTAGATGAAGAAGAAAGTGAGCTTCCATTAAAACCAGAACTTTTCTTCTACCCAACAACACCAACATCTTTTGTTGTATCAGATGCACTTGAATCAGATTTTCCAATCATTTATGTCAACAAAGTCTTTGAAATCTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTCGTAACTGCCGGTTCTTGCAATATAGGGATCCTAGAGCTCAGAGGCGGCATCCTTTGGTGGATCCAGTCGTTGTGTCTGAGATTAGAAGATGTCTTGAAGAAGGTATTGAGTTCCAAGGGGAACTTCTGAATTTCAGAAAGGATGGCACTCCCTTAGTCAACAGACTTAGGCTTACGCCAATTCATGATGATGATGGAGTCGTGACACACATAATAGGTATCCAAATCTTTTCCGAAGCAAACATAGACTTGAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAAAGTGGAAAATTATTGTACACTCCACGGCAGCGCGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCGCACAACATATTGTCACGCTTGACACCGAGGGATGTTGCATCGATTGGTTCTGTTTGCAGGAGGATCCGTCAATTGACAAAGAACGAGCACGTTAGGAAGATGGTTTGTCAAAACGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTAGGTTGGGGCCGTCTGACTCGGGAGCTTACTACTCTTGAGGCTGTTTGCTGGAAAAAAGTTACAGTTGGAGGCGGGGTTGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATAGGCTTGTATTATTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTAAATCTTGATGCTAAGAATCCAGAATGGCAAAGGGTTAGTGTGATATCCTCCCCGCCCGGCCGATGGGGCCACACACTCTCTTGCTTAAACAGTTCTTGGCTAGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTTAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCGACATGGAAGGAAGTCTTCGGTGAAGCGCCGCCTCTTCCGAGATCTTGGCACAGCTCATGCACAATTGAAGGCTCTAAATTGGTTGTCTCGGGCGGCTGCACAGATGCCGGAGTACTTCTTAGTGACACATATTTACTTGACCTCACAATAGATAATCCTACATGGAGAGAAATTCCAACTTCATGGACTCCTCCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAACCACAATGGAGGCAACTAGAATGTAGTGCATTCACAGGTTTATCAAATCAAAATGCTGTTGTACCTCCTCCTCGACTAGATCATGTTGCAGTAAGCATGCCTTGTGGGAGGGTTATTATATTTGGAGGTTCCATTGCAGGTCTTCATTCACCGTCTCAGCTATTTCTATTGGACCCTGCCGAAGAGAAACCGACGTGGAGGATCCTCAATGTTCCGGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGAGTTTTGGTGTTGGGTGGACATACCGGGGAGGAATGGGTGCTGAATGAGTTGCATGAGTTGTGCTTGGCAAGTCGACAAGACTCTGACATGTGA
Protein sequence

>Msa0001810

MAMARDKNEDEEEVHNQNQKGGKRLKCMNMKKNEQEEKQVVDEEESELPLKPELFFYPTTPTSFVVSDALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHIIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYTPRQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVISSPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGEAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPQWRQLECSAFTGLSNQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM*