Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349680 | XP_003598625.1 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349680 | sp|Q9FLE8|Y5986_ARATH | 48.780 | 164 | 66 | 6 | 116 | 261 | 225 | 388 | 2.30e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349680 | G7IYV7 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0349680 | Msa0362060 | 0.800853 | 1.186195e-48 | -8.615850e-47 |
| Msa0349680 | Msa0416320 | 0.830612 | 2.662967e-55 | -8.615850e-47 |
| Msa0349680 | Msa0491500 | 0.805373 | 1.377541e-49 | -8.615850e-47 |
| Msa0349680 | Msa0491520 | 0.818446 | 1.951527e-52 | -8.615850e-47 |
| Msa0349680 | Msa0581920 | 0.815224 | 1.031459e-51 | -8.615850e-47 |
| Msa0349680 | Msa0610770 | 0.814088 | 1.840357e-51 | -8.615850e-47 |
| Msa0349680 | Msa0651320 | 0.824123 | 9.571558e-54 | -8.615850e-47 |
| Msa0349680 | Msa1207460 | -0.812242 | 4.677623e-51 | -8.615850e-47 |
| Msa0349680 | Msa1383480 | 0.827601 | 1.429411e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349680 | MtrunA17_Chr3g0083531 | 96.831 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 0.0 | 558 |
| Msa0349680 | MtrunA17_Chr8g0352771 | 51.880 | 266 | 104 | 3 | 2 | 264 | 13 | 257 | 6.28e-86 | 257 |
| Msa0349680 | MtrunA17_Chr7g0256501 | 63.816 | 152 | 54 | 1 | 111 | 261 | 273 | 424 | 2.10e-69 | 221 |
| Msa0349680 | MtrunA17_Chr1g0171871 | 60.000 | 160 | 55 | 1 | 111 | 261 | 204 | 363 | 7.22e-67 | 212 |
| Msa0349680 | MtrunA17_Chr3g0105871 | 49.351 | 154 | 75 | 3 | 111 | 263 | 83 | 234 | 1.05e-49 | 164 |
| Msa0349680 | MtrunA17_Chr5g0437471 | 53.061 | 147 | 67 | 2 | 115 | 261 | 94 | 238 | 3.19e-49 | 163 |
| Msa0349680 | MtrunA17_Chr5g0431071 | 42.246 | 187 | 99 | 3 | 82 | 261 | 69 | 253 | 1.41e-46 | 157 |
| Msa0349680 | MtrunA17_Chr3g0113971 | 51.389 | 144 | 68 | 2 | 118 | 261 | 93 | 234 | 2.22e-45 | 153 |
| Msa0349680 | MtrunA17_Chr7g0266401 | 45.946 | 148 | 78 | 1 | 114 | 261 | 259 | 404 | 1.07e-40 | 145 |
| Msa0349680 | MtrunA17_Chr1g0196971 | 46.309 | 149 | 78 | 2 | 114 | 262 | 223 | 369 | 5.02e-40 | 142 |
| Msa0349680 | MtrunA17_Chr7g0267591 | 45.513 | 156 | 74 | 3 | 116 | 262 | 126 | 279 | 6.24e-40 | 140 |
| Msa0349680 | MtrunA17_Chr8g0388481 | 45.223 | 157 | 77 | 3 | 113 | 261 | 212 | 367 | 1.01e-36 | 134 |
| Msa0349680 | MtrunA17_Chr8g0392761 | 45.161 | 155 | 80 | 2 | 113 | 262 | 120 | 274 | 1.75e-36 | 131 |
| Msa0349680 | MtrunA17_Chr7g0217121 | 44.242 | 165 | 73 | 3 | 116 | 261 | 267 | 431 | 3.22e-35 | 131 |
| Msa0349680 | MtrunA17_Chr6g0453031 | 42.197 | 173 | 80 | 6 | 109 | 261 | 250 | 422 | 1.20e-34 | 129 |
| Msa0349680 | MtrunA17_Chr3g0089011 | 37.255 | 153 | 78 | 3 | 128 | 262 | 2 | 154 | 9.96e-24 | 94.4 |
| Msa0349680 | MtrunA17_Chr5g0412021 | 35.484 | 93 | 53 | 2 | 156 | 241 | 1 | 93 | 8.79e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349680 | AT5G13810.1 | 55.682 | 264 | 97 | 5 | 6 | 262 | 23 | 273 | 2.71e-95 | 282 |
| Msa0349680 | AT2G41330.1 | 56.442 | 163 | 69 | 2 | 101 | 261 | 239 | 401 | 1.80e-55 | 184 |
| Msa0349680 | AT3G57070.1 | 56.494 | 154 | 65 | 1 | 110 | 261 | 262 | 415 | 1.48e-54 | 182 |
| Msa0349680 | AT5G58530.1 | 45.000 | 200 | 94 | 5 | 76 | 262 | 70 | 266 | 1.11e-49 | 166 |
| Msa0349680 | AT5G39865.1 | 48.780 | 164 | 66 | 6 | 116 | 261 | 225 | 388 | 2.34e-42 | 149 |
| Msa0349680 | AT5G06470.1 | 41.618 | 173 | 86 | 4 | 102 | 262 | 70 | 239 | 7.76e-41 | 142 |
| Msa0349680 | AT3G28850.1 | 42.614 | 176 | 71 | 3 | 116 | 261 | 251 | 426 | 1.57e-38 | 140 |
| Msa0349680 | AT4G10630.1 | 46.584 | 161 | 74 | 4 | 114 | 262 | 174 | 334 | 2.15e-38 | 138 |
| Msa0349680 | AT1G32760.1 | 49.689 | 161 | 73 | 4 | 110 | 262 | 154 | 314 | 2.48e-38 | 137 |
| Msa0349680 | AT3G11773.1 | 46.479 | 142 | 73 | 3 | 121 | 262 | 12 | 150 | 4.68e-36 | 126 |
| Msa0349680 | AT5G03870.1 | 44.667 | 150 | 82 | 1 | 114 | 262 | 235 | 384 | 2.47e-35 | 131 |
| Msa0349680 | AT1G64500.1 | 43.421 | 152 | 78 | 3 | 118 | 261 | 214 | 365 | 3.14e-34 | 127 |
| Msa0349680 | AT5G01420.1 | 43.333 | 150 | 82 | 3 | 114 | 262 | 254 | 401 | 8.06e-32 | 122 |
| Msa0349680 | AT3G11773.2 | 47.321 | 112 | 56 | 3 | 151 | 262 | 92 | 200 | 6.08e-26 | 102 |
Find 70 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGGTTTAGGGTTT+GGG | 0.218316 | 3_1:+13726615 | Msa0349680:CDS |
| ATCAGAGAATAGGAGGAAAA+AGG | 0.262644 | 3_1:-13728390 | None:intergenic |
| TGTCCTTGTTGCGCCTGTTC+TGG | 0.272820 | 3_1:+13728022 | Msa0349680:CDS |
| TTATATTACAGAAGCGATTA+TGG | 0.292045 | 3_1:+13728161 | Msa0349680:three_prime_UTR |
| ATTAAACATAACTGCAAAAC+TGG | 0.316340 | 3_1:+13728279 | Msa0349680:three_prime_UTR |
| CCACGTGCGGCTTCGAAGTT+AGG | 0.339185 | 3_1:+13726448 | Msa0349680:CDS |
| ATGAAAAGGGTATGTTGTTT+CGG | 0.362170 | 3_1:+13726500 | Msa0349680:CDS |
| CTACCTCAAGTGTTCGTTAG+AGG | 0.363674 | 3_1:+13727773 | Msa0349680:CDS |
| AGGATTTGAAAGAAAGAAGT+TGG | 0.382704 | 3_1:-13725893 | None:intergenic |
| ATTAAGTCTCTATTTGAAAC+TGG | 0.396574 | 3_1:+13727821 | Msa0349680:CDS |
| TGCTTTCAGAAAAGAATTGC+AGG | 0.412980 | 3_1:+13726666 | Msa0349680:CDS |
| CTTCGAAGCCGCACGTGGTT+CGG | 0.416891 | 3_1:-13726443 | None:intergenic |
| TTGAAACTGGTGAATTGAAA+AGG | 0.417136 | 3_1:+13727834 | Msa0349680:CDS |
| TTAGGTCAGAAGCCGCGTTC+TGG | 0.417750 | 3_1:+13726466 | Msa0349680:CDS |
| TGATGAAAGAGATGTTTCTA+TGG | 0.421139 | 3_1:+13726639 | Msa0349680:CDS |
| TCAGAAGCCGCGTTCTGGTT+CGG | 0.442103 | 3_1:+13726471 | Msa0349680:CDS |
| GCCGCACGTGGTTCGGAAGA+AGG | 0.443209 | 3_1:-13726436 | None:intergenic |
| AACAAAGCCAGGCTTCATCT+TGG | 0.443746 | 3_1:-13727873 | None:intergenic |
| GGGTATGTTGTTTCGGTTGG+CGG | 0.446125 | 3_1:+13726507 | Msa0349680:CDS |
| ACAAAGCCAGGCTTCATCTT+GGG | 0.451900 | 3_1:-13727872 | None:intergenic |
| AAGCAAATTCTACGGTTCAA+TGG | 0.458730 | 3_1:+13726297 | Msa0349680:CDS |
| AGGGATAAGAAGAACGTTTG+AGG | 0.460025 | 3_1:+13726570 | Msa0349680:CDS |
| CAACTTTCGCAAACAAAGCC+AGG | 0.474869 | 3_1:-13727884 | None:intergenic |
| ACAGAACATCATTCCAGAAC+AGG | 0.474894 | 3_1:-13728035 | None:intergenic |
| TGGTTCGGAAGAAGATGAAA+AGG | 0.475046 | 3_1:+13726486 | Msa0349680:CDS |
| ATTGTTGCTGCAGTCTGTGA+TGG | 0.475824 | 3_1:+13727733 | Msa0349680:intron |
| GCGAAAGTTGTGGCGATGCT+AGG | 0.476444 | 3_1:+13727897 | Msa0349680:CDS |
| ATCATCTCTACGTGGAAGAA+TGG | 0.484954 | 3_1:+13726330 | Msa0349680:CDS |
| CGGTCTAGAAACTCGTTGAA+TGG | 0.485509 | 3_1:-13726262 | None:intergenic |
| GTAGAATTTGCTTAACGAAC+CGG | 0.485771 | 3_1:-13726287 | None:intergenic |
| AAAGGGTATGTTGTTTCGGT+TGG | 0.494457 | 3_1:+13726504 | Msa0349680:CDS |
| ACAAAACAAAACGATGTTCA+AGG | 0.501444 | 3_1:-13728226 | None:intergenic |
| AGGTTTGTTGAAAAGATGCT+TGG | 0.503226 | 3_1:+13727973 | Msa0349680:CDS |
| ACCTTCTTCCGAACCACGTG+CGG | 0.515628 | 3_1:+13726435 | Msa0349680:CDS |
| ATCCTTTATATTGTAAAATG+TGG | 0.518866 | 3_1:+13728090 | Msa0349680:exon |
| GAATTGAAAAGGATTCTTGA+AGG | 0.524790 | 3_1:+13727845 | Msa0349680:CDS |
| TGCTTGGAGTGCAATGAGAA+TGG | 0.530091 | 3_1:+13727989 | Msa0349680:CDS |
| AACGAGTTTCTAGACCGGTC+CGG | 0.530614 | 3_1:+13726268 | Msa0349680:CDS |
| CTATAGATAATGATAAAGAA+TGG | 0.531876 | 3_1:+13728355 | Msa0349680:three_prime_UTR |
| GTGAGAATTGCAGTGGGAGT+AGG | 0.533959 | 3_1:+13727930 | Msa0349680:CDS |
| GGCTTTGTTTGCGAAAGTTG+TGG | 0.541080 | 3_1:+13727887 | Msa0349680:CDS |
| ATTTGCTTAACGAACCGGAC+CGG | 0.549932 | 3_1:-13726282 | None:intergenic |
| GGTTGGCGGATGCTGATGAT+CGG | 0.555952 | 3_1:+13726521 | Msa0349680:CDS |
| TGTATTTGACGAGTTTGAGA+GGG | 0.565359 | 3_1:+13726551 | Msa0349680:CDS |
| GGTTCGGAAGAAGATGAAAA+GGG | 0.565516 | 3_1:+13726487 | Msa0349680:CDS |
| GTTAGAGGAAAGTACATTGG+TGG | 0.572212 | 3_1:+13727788 | Msa0349680:CDS |
| TTGTTGCTGCAGTCTGTGAT+GGG | 0.579187 | 3_1:+13727734 | Msa0349680:intron |
| GGTTCGTTAAGCAAATTCTA+CGG | 0.596106 | 3_1:+13726289 | Msa0349680:CDS |
| TTCGTTAGAGGAAAGTACAT+TGG | 0.597968 | 3_1:+13727785 | Msa0349680:CDS |
| TCTTCTTCCGAACCAGAACG+CGG | 0.600432 | 3_1:-13726478 | None:intergenic |
| GTGTATTTGACGAGTTTGAG+AGG | 0.605361 | 3_1:+13726550 | Msa0349680:CDS |
| AAGCGATTATGGTTGCAGCC+CGG | 0.607773 | 3_1:+13728172 | Msa0349680:three_prime_UTR |
| CTCCCACTGCAATTCTCACA+AGG | 0.613824 | 3_1:-13727926 | None:intergenic |
| TACCTTGTGAGAATTGCAGT+GGG | 0.615095 | 3_1:+13727924 | Msa0349680:CDS |
| ATACCTTGTGAGAATTGCAG+TGG | 0.616068 | 3_1:+13727923 | Msa0349680:CDS |
| ATTCCAGAACAGGCGCAACA+AGG | 0.629811 | 3_1:-13728025 | None:intergenic |
| GGATGCTGATGATCGGATTG+TGG | 0.634382 | 3_1:+13726528 | Msa0349680:CDS |
| ACGTGTGCATCGTGTTCGAT+CGG | 0.643592 | 3_1:-13726216 | None:intergenic |
| CCTAACTTCGAAGCCGCACG+TGG | 0.643711 | 3_1:-13726448 | None:intergenic |
| AAATTATTCGATGAGGACGA+AGG | 0.644929 | 3_1:+13727953 | Msa0349680:CDS |
| CATTCAACGAGTTTCTAGAC+CGG | 0.645792 | 3_1:+13726263 | Msa0349680:CDS |
| GCTGCAGTCTGTGATGGGTG+AGG | 0.646757 | 3_1:+13727739 | Msa0349680:intron |
| AAAGAGTGAAATGAAATGTG+TGG | 0.656253 | 3_1:-13725916 | None:intergenic |
| TTTCCTCTAACGAACACTTG+AGG | 0.658788 | 3_1:-13727776 | None:intergenic |
| TTCTGTGAATATGAAAACGA+GGG | 0.687228 | 3_1:+13728052 | Msa0349680:CDS |
| GGAATTTAAAACCATGACAG+TGG | 0.692693 | 3_1:+13728193 | Msa0349680:three_prime_UTR |
| GAGTGAAATGAAATGTGTGG+AGG | 0.701200 | 3_1:-13725913 | None:intergenic |
| GAGTAGGAAATTATTCGATG+AGG | 0.731014 | 3_1:+13727946 | Msa0349680:CDS |
| GTTCTGTGAATATGAAAACG+AGG | 0.763470 | 3_1:+13728051 | Msa0349680:CDS |
| TCAATGAAATCATCTCTACG+TGG | 0.778466 | 3_1:+13726322 | Msa0349680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTAAATTAAAAAAAA+GGG | - | chr3_1:13727106-13727125 | None:intergenic | 0.0% |
| !!! | GTTTTTTTTGTTTTTGTTTA+TGG | - | chr3_1:13726029-13726048 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGGTC+TGG | + | chr3_1:13726954-13726973 | Msa0349680:intron | 15.0% |
| !!! | GTTACAATTTTTTTAACATA+TGG | + | chr3_1:13727032-13727051 | Msa0349680:intron | 15.0% |
| !! | TAAATTAAAAAAAAGGGAAT+TGG | - | chr3_1:13727100-13727119 | None:intergenic | 15.0% |
| !!! | TTTTTTCTGTTTGCAATATT+TGG | - | chr3_1:13726051-13726070 | None:intergenic | 20.0% |
| !! | AATTAGAAAAGCTATGAATT+TGG | + | chr3_1:13727396-13727415 | Msa0349680:intron | 20.0% |
| !! | ATTAGAAAAGCTATGAATTT+GGG | + | chr3_1:13727397-13727416 | Msa0349680:intron | 20.0% |
| !! | TATAAAACTATGTTCTATAC+TGG | - | chr3_1:13727655-13727674 | None:intergenic | 20.0% |
| !! | ATCCTTTATATTGTAAAATG+TGG | + | chr3_1:13728090-13728109 | Msa0349680:exon | 20.0% |
| !! | CTATAGATAATGATAAAGAA+TGG | + | chr3_1:13728355-13728374 | Msa0349680:three_prime_UTR | 20.0% |
| !!! | GTTTTTTTGTGTTGGTTAAT+TGG | - | chr3_1:13725971-13725990 | None:intergenic | 25.0% |
| !!! | TAGTTGTTGTTTTTTTGTGT+TGG | - | chr3_1:13725979-13725998 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGTTTATGGCTA+TGG | - | chr3_1:13726023-13726042 | None:intergenic | 25.0% |
| !!! | CTGTTAAGATGATTTTGAAA+GGG | + | chr3_1:13726602-13726621 | Msa0349680:CDS | 25.0% |
| ! | AAAAAGAACAAGAAGAAAGA+AGG | - | chr3_1:13726699-13726718 | None:intergenic | 25.0% |
| ! | AACATGATCATACAAATTCA+CGG | - | chr3_1:13726777-13726796 | None:intergenic | 25.0% |
| ! | ACATGCATTAAGAAAATTGT+GGG | - | chr3_1:13726826-13726845 | None:intergenic | 25.0% |
| ! | AACATGCATTAAGAAAATTG+TGG | - | chr3_1:13726827-13726846 | None:intergenic | 25.0% |
| ! | TTAACATATGGTGAAAAATG+AGG | + | chr3_1:13727044-13727063 | Msa0349680:intron | 25.0% |
| ! | TAACATATGGTGAAAAATGA+GGG | + | chr3_1:13727045-13727064 | Msa0349680:intron | 25.0% |
| ! | AGAGCACAAAAAATAAAACT+GGG | - | chr3_1:13727144-13727163 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTTTAGTAGACA+GGG | + | chr3_1:13727170-13727189 | Msa0349680:intron | 25.0% |
| ! | TGATTGTTGATGCATAATAA+AGG | + | chr3_1:13727215-13727234 | Msa0349680:intron | 25.0% |
| ! | ACTTTAAATGCAGAATTTAG+AGG | - | chr3_1:13727248-13727267 | None:intergenic | 25.0% |
| ! | ATGAATTTGGGAAATTGATT+TGG | + | chr3_1:13727409-13727428 | Msa0349680:intron | 25.0% |
| !!! | CACAGTTTTTTATTTAGACT+CGG | + | chr3_1:13727448-13727467 | Msa0349680:intron | 25.0% |
| ! | AAGCTTTCAAAAATGATCAA+CGG | - | chr3_1:13727590-13727609 | None:intergenic | 25.0% |
| ! | GACAAAATTAAGACAAAACA+TGG | - | chr3_1:13727708-13727727 | None:intergenic | 25.0% |
| !! | ATTAAGTCTCTATTTGAAAC+TGG | + | chr3_1:13727821-13727840 | Msa0349680:CDS | 25.0% |
| ! | TTATATTACAGAAGCGATTA+TGG | + | chr3_1:13728161-13728180 | Msa0349680:three_prime_UTR | 25.0% |
| ! | ATTAAACATAACTGCAAAAC+TGG | + | chr3_1:13728279-13728298 | Msa0349680:three_prime_UTR | 25.0% |
| AGGATTTGAAAGAAAGAAGT+TGG | - | chr3_1:13725896-13725915 | None:intergenic | 30.0% | |
| AAAGAGTGAAATGAAATGTG+TGG | - | chr3_1:13725919-13725938 | None:intergenic | 30.0% | |
| !!! | GGAATTTTTTGTTTCTGTTG+AGG | - | chr3_1:13726002-13726021 | None:intergenic | 30.0% |
| ! | ATGAAAAGGGTATGTTGTTT+CGG | + | chr3_1:13726500-13726519 | Msa0349680:CDS | 30.0% |
| ! | GCTGTTAAGATGATTTTGAA+AGG | + | chr3_1:13726601-13726620 | Msa0349680:CDS | 30.0% |
| !! | AGATGATTTTGAAAGGGTTT+AGG | + | chr3_1:13726608-13726627 | Msa0349680:CDS | 30.0% |
| !! | GATGATTTTGAAAGGGTTTA+GGG | + | chr3_1:13726609-13726628 | Msa0349680:CDS | 30.0% |
| ! | TGATGAAAGAGATGTTTCTA+TGG | + | chr3_1:13726639-13726658 | Msa0349680:CDS | 30.0% |
| ! | TGTTCTTTTTATGACATGTC+TGG | + | chr3_1:13726709-13726728 | Msa0349680:intron | 30.0% |
| ! | GAGAGCACAAAAAATAAAAC+TGG | - | chr3_1:13727145-13727164 | None:intergenic | 30.0% |
| CTACTAAAAATCAAAACGCA+AGG | - | chr3_1:13727167-13727186 | None:intergenic | 30.0% | |
| !!! | CGTTTTGATTTTTAGTAGAC+AGG | + | chr3_1:13727169-13727188 | Msa0349680:intron | 30.0% |
| ATTCAGCAAAGTCAATATGT+GGG | - | chr3_1:13727310-13727329 | None:intergenic | 30.0% | |
| AATTCAGCAAAGTCAATATG+TGG | - | chr3_1:13727311-13727330 | None:intergenic | 30.0% | |
| TCTGATATCAAATTAACAGC+AGG | + | chr3_1:13727523-13727542 | Msa0349680:intron | 30.0% | |
| ACATGGACATAGGTTAAAAT+TGG | - | chr3_1:13727691-13727710 | None:intergenic | 30.0% | |
| TTAAGACAAAACATGGACAT+AGG | - | chr3_1:13727701-13727720 | None:intergenic | 30.0% | |
| TTGAAACTGGTGAATTGAAA+AGG | + | chr3_1:13727834-13727853 | Msa0349680:CDS | 30.0% | |
| GAATTGAAAAGGATTCTTGA+AGG | + | chr3_1:13727845-13727864 | Msa0349680:CDS | 30.0% | |
| TTCTGTGAATATGAAAACGA+GGG | + | chr3_1:13728052-13728071 | Msa0349680:CDS | 30.0% | |
| ! | CGCCACATTTTACAATATAA+AGG | - | chr3_1:13728095-13728114 | None:intergenic | 30.0% |
| !!! | ACTGTCATGGTTTTAAATTC+CGG | - | chr3_1:13728194-13728213 | None:intergenic | 30.0% |
| ACAAAACAAAACGATGTTCA+AGG | - | chr3_1:13728229-13728248 | None:intergenic | 30.0% | |
| ! | AAGAATTTTCGAAGATGTCG+AGG | + | chr3_1:13726179-13726198 | Msa0349680:exon | 35.0% |
| ! | GTAGAATTTGCTTAACGAAC+CGG | - | chr3_1:13726290-13726309 | None:intergenic | 35.0% |
| GGTTCGTTAAGCAAATTCTA+CGG | + | chr3_1:13726289-13726308 | Msa0349680:CDS | 35.0% | |
| AAGCAAATTCTACGGTTCAA+TGG | + | chr3_1:13726297-13726316 | Msa0349680:CDS | 35.0% | |
| TCAATGAAATCATCTCTACG+TGG | + | chr3_1:13726322-13726341 | Msa0349680:CDS | 35.0% | |
| TGTATTTGACGAGTTTGAGA+GGG | + | chr3_1:13726551-13726570 | Msa0349680:CDS | 35.0% | |
| !! | TTTTGAAAGGGTTTAGGGTT+TGG | + | chr3_1:13726614-13726633 | Msa0349680:CDS | 35.0% |
| ! | TTTGAAAGGGTTTAGGGTTT+GGG | + | chr3_1:13726615-13726634 | Msa0349680:CDS | 35.0% |
| TGCTTTCAGAAAAGAATTGC+AGG | + | chr3_1:13726666-13726685 | Msa0349680:CDS | 35.0% | |
| GAACAAGAAGAAAGAAGGTT+TGG | - | chr3_1:13726694-13726713 | None:intergenic | 35.0% | |
| ! | AGGGTTTAAAATTGTTCGTG+TGG | + | chr3_1:13727189-13727208 | Msa0349680:intron | 35.0% |
| ! | GTTTAAAATTGTTCGTGTGG+TGG | + | chr3_1:13727192-13727211 | Msa0349680:intron | 35.0% |
| CAAATTAACAGCAGGAAAAC+CGG | + | chr3_1:13727531-13727550 | Msa0349680:intron | 35.0% | |
| ! | TTCGTTAGAGGAAAGTACAT+TGG | + | chr3_1:13727785-13727804 | Msa0349680:CDS | 35.0% |
| GAGTAGGAAATTATTCGATG+AGG | + | chr3_1:13727946-13727965 | Msa0349680:CDS | 35.0% | |
| AAATTATTCGATGAGGACGA+AGG | + | chr3_1:13727953-13727972 | Msa0349680:CDS | 35.0% | |
| !! | AGGTTTGTTGAAAAGATGCT+TGG | + | chr3_1:13727973-13727992 | Msa0349680:CDS | 35.0% |
| GTTCTGTGAATATGAAAACG+AGG | + | chr3_1:13728051-13728070 | Msa0349680:CDS | 35.0% | |
| !!! | CTGTCATGGTTTTAAATTCC+GGG | - | chr3_1:13728193-13728212 | None:intergenic | 35.0% |
| ! | GGAATTTAAAACCATGACAG+TGG | + | chr3_1:13728193-13728212 | Msa0349680:three_prime_UTR | 35.0% |
| GAGTGAAATGAAATGTGTGG+AGG | - | chr3_1:13725916-13725935 | None:intergenic | 40.0% | |
| ! | CATTCAACGAGTTTCTAGAC+CGG | + | chr3_1:13726263-13726282 | Msa0349680:CDS | 40.0% |
| ATCATCTCTACGTGGAAGAA+TGG | + | chr3_1:13726330-13726349 | Msa0349680:CDS | 40.0% | |
| ! | TGGTTCGGAAGAAGATGAAA+AGG | + | chr3_1:13726486-13726505 | Msa0349680:CDS | 40.0% |
| GGTTCGGAAGAAGATGAAAA+GGG | + | chr3_1:13726487-13726506 | Msa0349680:CDS | 40.0% | |
| !! | AAAGGGTATGTTGTTTCGGT+TGG | + | chr3_1:13726504-13726523 | Msa0349680:CDS | 40.0% |
| GTGTATTTGACGAGTTTGAG+AGG | + | chr3_1:13726550-13726569 | Msa0349680:CDS | 40.0% | |
| AGGGATAAGAAGAACGTTTG+AGG | + | chr3_1:13726570-13726589 | Msa0349680:CDS | 40.0% | |
| ! | CTGCATTTAAAGTTGTCACG+AGG | + | chr3_1:13727255-13727274 | Msa0349680:intron | 40.0% |
| AAAAATTCGCTGCGACTGTA+TGG | - | chr3_1:13727559-13727578 | None:intergenic | 40.0% | |
| TTTCCTCTAACGAACACTTG+AGG | - | chr3_1:13727779-13727798 | None:intergenic | 40.0% | |
| ! | GTTAGAGGAAAGTACATTGG+TGG | + | chr3_1:13727788-13727807 | Msa0349680:CDS | 40.0% |
| ATACCTTGTGAGAATTGCAG+TGG | + | chr3_1:13727923-13727942 | Msa0349680:CDS | 40.0% | |
| TACCTTGTGAGAATTGCAGT+GGG | + | chr3_1:13727924-13727943 | Msa0349680:CDS | 40.0% | |
| ACAGAACATCATTCCAGAAC+AGG | - | chr3_1:13728038-13728057 | None:intergenic | 40.0% | |
| CGGTCTAGAAACTCGTTGAA+TGG | - | chr3_1:13726265-13726284 | None:intergenic | 45.0% | |
| ATTTGCTTAACGAACCGGAC+CGG | - | chr3_1:13726285-13726304 | None:intergenic | 45.0% | |
| ! | TCTTTTGTCGTCGTCGTTGT+TGG | - | chr3_1:13726385-13726404 | None:intergenic | 45.0% |
| !! | TATGATCACGTTGACTCGTC+TGG | + | chr3_1:13726886-13726905 | Msa0349680:intron | 45.0% |
| ! | GTCACGAGGTCTTTGATGAT+TGG | + | chr3_1:13727269-13727288 | Msa0349680:intron | 45.0% |
| ATTGTTGCTGCAGTCTGTGA+TGG | + | chr3_1:13727733-13727752 | Msa0349680:intron | 45.0% | |
| TTGTTGCTGCAGTCTGTGAT+GGG | + | chr3_1:13727734-13727753 | Msa0349680:intron | 45.0% | |
| CTACCTCAAGTGTTCGTTAG+AGG | + | chr3_1:13727773-13727792 | Msa0349680:CDS | 45.0% | |
| ACAAAGCCAGGCTTCATCTT+GGG | - | chr3_1:13727875-13727894 | None:intergenic | 45.0% | |
| AACAAAGCCAGGCTTCATCT+TGG | - | chr3_1:13727876-13727895 | None:intergenic | 45.0% | |
| CAACTTTCGCAAACAAAGCC+AGG | - | chr3_1:13727887-13727906 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTTGCGAAAGTTG+TGG | + | chr3_1:13727887-13727906 | Msa0349680:CDS | 45.0% |
| TGCTTGGAGTGCAATGAGAA+TGG | + | chr3_1:13727989-13728008 | Msa0349680:CDS | 45.0% | |
| !! | AAAAAAAAAAAAAAAATCAT+AGG | - | chr3_1:13726949-13726968 | None:intergenic | 5.0% |
| !!! | ATGATTTTTTTTTTTTTTTT+TGG | + | chr3_1:13726949-13726968 | Msa0349680:intron | 5.0% |
| !! | CAAAATTTAAATTAAAAAAA+AGG | - | chr3_1:13727107-13727126 | None:intergenic | 5.0% |
| ACGTGTGCATCGTGTTCGAT+CGG | - | chr3_1:13726219-13726238 | None:intergenic | 50.0% | |
| ! | AACGAGTTTCTAGACCGGTC+CGG | + | chr3_1:13726268-13726287 | Msa0349680:CDS | 50.0% |
| TCTTCTTCCGAACCAGAACG+CGG | - | chr3_1:13726481-13726500 | None:intergenic | 50.0% | |
| !! | GGGTATGTTGTTTCGGTTGG+CGG | + | chr3_1:13726507-13726526 | Msa0349680:CDS | 50.0% |
| GGATGCTGATGATCGGATTG+TGG | + | chr3_1:13726528-13726547 | Msa0349680:CDS | 50.0% | |
| ! | GGTTTTCCCAAGATGAAGCC+TGG | + | chr3_1:13727866-13727885 | Msa0349680:CDS | 50.0% |
| CTCCCACTGCAATTCTCACA+AGG | - | chr3_1:13727929-13727948 | None:intergenic | 50.0% | |
| GTGAGAATTGCAGTGGGAGT+AGG | + | chr3_1:13727930-13727949 | Msa0349680:CDS | 50.0% | |
| ATTCCAGAACAGGCGCAACA+AGG | - | chr3_1:13728028-13728047 | None:intergenic | 50.0% | |
| AAGCGATTATGGTTGCAGCC+CGG | + | chr3_1:13728172-13728191 | Msa0349680:three_prime_UTR | 50.0% | |
| GCGCAAAAACACCACTGTCA+TGG | - | chr3_1:13728207-13728226 | None:intergenic | 50.0% | |
| ACCTTCTTCCGAACCACGTG+CGG | + | chr3_1:13726435-13726454 | Msa0349680:CDS | 55.0% | |
| TTAGGTCAGAAGCCGCGTTC+TGG | + | chr3_1:13726466-13726485 | Msa0349680:CDS | 55.0% | |
| ! | TCAGAAGCCGCGTTCTGGTT+CGG | + | chr3_1:13726471-13726490 | Msa0349680:CDS | 55.0% |
| ! | GGTTGGCGGATGCTGATGAT+CGG | + | chr3_1:13726521-13726540 | Msa0349680:CDS | 55.0% |
| TCGCTGCGACTGTATGGATC+CGG | - | chr3_1:13727553-13727572 | None:intergenic | 55.0% | |
| GCGAAAGTTGTGGCGATGCT+AGG | + | chr3_1:13727897-13727916 | Msa0349680:CDS | 55.0% | |
| TGTCCTTGTTGCGCCTGTTC+TGG | + | chr3_1:13728022-13728041 | Msa0349680:CDS | 55.0% | |
| CTTCGAAGCCGCACGTGGTT+CGG | - | chr3_1:13726446-13726465 | None:intergenic | 60.0% | |
| CCTAACTTCGAAGCCGCACG+TGG | - | chr3_1:13726451-13726470 | None:intergenic | 60.0% | |
| CCACGTGCGGCTTCGAAGTT+AGG | + | chr3_1:13726448-13726467 | Msa0349680:CDS | 60.0% | |
| !! | GCTGCAGTCTGTGATGGGTG+AGG | + | chr3_1:13727739-13727758 | Msa0349680:intron | 60.0% |
| ! | GCCGCACGTGGTTCGGAAGA+AGG | - | chr3_1:13726439-13726458 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 13725873 | 13728397 | 13725873 | ID=Msa0349680;Name=Msa0349680 |
| chr3_1 | mRNA | 13725873 | 13728397 | 13725873 | ID=Msa0349680-mRNA-1;Parent=Msa0349680;Name=Msa0349680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=320|1|1|1|1|1|2|292|284 |
| chr3_1 | exon | 13725873 | 13726687 | 13725873 | ID=Msa0349680-mRNA-1:exon:3421;Parent=Msa0349680-mRNA-1 |
| chr3_1 | exon | 13727746 | 13728397 | 13727746 | ID=Msa0349680-mRNA-1:exon:3422;Parent=Msa0349680-mRNA-1 |
| chr3_1 | five_prime_UTR | 13725873 | 13726192 | 13725873 | ID=Msa0349680-mRNA-1:five_prime_utr;Parent=Msa0349680-mRNA-1 |
| chr3_1 | CDS | 13726193 | 13726687 | 13726193 | ID=Msa0349680-mRNA-1:cds;Parent=Msa0349680-mRNA-1 |
| chr3_1 | CDS | 13727746 | 13728105 | 13727746 | ID=Msa0349680-mRNA-1:cds;Parent=Msa0349680-mRNA-1 |
| chr3_1 | three_prime_UTR | 13728106 | 13728397 | 13728106 | ID=Msa0349680-mRNA-1:three_prime_utr;Parent=Msa0349680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
