Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610770 | XP_003607906.1 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 5.17e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610770 | sp|Q9SSL1|CAR7_ARATH | 55.488 | 164 | 73 | 0 | 1 | 164 | 1 | 164 | 2.54e-62 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610770 | G7JJZ3 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 2.47e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0610770 | 0.812253 | 4.652882e-51 | -8.615850e-47 |
| Msa0038310 | Msa0610770 | 0.820997 | 5.103490e-53 | -8.615850e-47 |
| Msa0087110 | Msa0610770 | 0.802933 | 4.434784e-49 | -8.615850e-47 |
| Msa0610770 | Msa0650650 | 0.846919 | 1.604724e-59 | -8.615850e-47 |
| Msa0610770 | Msa0650740 | 0.842344 | 2.739132e-58 | -8.615850e-47 |
| Msa0610770 | Msa0651320 | 0.984980 | 3.638686e-162 | -8.615850e-47 |
| Msa0610770 | Msa0693490 | 0.937097 | 6.021632e-98 | -8.615850e-47 |
| Msa0610770 | Msa0713210 | 0.804211 | 2.408292e-49 | -8.615850e-47 |
| Msa0610770 | Msa0754350 | 0.805834 | 1.102554e-49 | -8.615850e-47 |
| Msa0610770 | Msa0755080 | 0.830165 | 3.423471e-55 | -8.615850e-47 |
| Msa0610770 | Msa0755090 | 0.843722 | 1.176228e-58 | -8.615850e-47 |
| Msa0610770 | Msa0796950 | 0.816394 | 5.655885e-52 | -8.615850e-47 |
| Msa0610770 | Msa0797000 | 0.803134 | 4.029572e-49 | -8.615850e-47 |
| Msa0610770 | Msa0834450 | 0.832460 | 9.336296e-56 | -8.615850e-47 |
| Msa0610770 | Msa0834460 | 0.841848 | 3.704582e-58 | -8.615850e-47 |
| Msa0610770 | Msa0982590 | 0.811453 | 6.948352e-51 | -8.615850e-47 |
| Msa0610770 | Msa1015060 | 0.800663 | 1.296624e-48 | -8.615850e-47 |
| Msa0610770 | Msa1067920 | 0.803505 | 3.376687e-49 | -8.615850e-47 |
| Msa0610770 | Msa1092820 | 0.805964 | 1.034973e-49 | -8.615850e-47 |
| Msa0610770 | Msa1120620 | 0.823806 | 1.135995e-53 | -8.615850e-47 |
| Msa0610770 | Msa1157020 | 0.837292 | 5.665037e-57 | -8.615850e-47 |
| Msa0610770 | Msa1157920 | 0.824860 | 6.419822e-54 | -8.615850e-47 |
| Msa0610770 | Msa1211390 | 0.827121 | 1.863842e-54 | -8.615850e-47 |
| Msa0610770 | Msa1242990 | 0.801247 | 9.850680e-49 | -8.615850e-47 |
| Msa0610770 | Msa1282210 | 0.800328 | 1.517776e-48 | -8.615850e-47 |
| Msa0610770 | Msa1284390 | 0.826451 | 2.692970e-54 | -8.615850e-47 |
| Msa0610770 | Msa1306700 | 0.803385 | 3.575361e-49 | -8.615850e-47 |
| Msa0610770 | Msa1383480 | 0.833127 | 6.373968e-56 | -8.615850e-47 |
| Msa0223100 | Msa0610770 | 0.840247 | 9.753034e-58 | -8.615850e-47 |
| Msa0223290 | Msa0610770 | 0.839877 | 1.218414e-57 | -8.615850e-47 |
| Msa0223380 | Msa0610770 | 0.837195 | 5.997379e-57 | -8.615850e-47 |
| Msa0368780 | Msa0610770 | 0.822240 | 2.632745e-53 | -8.615850e-47 |
| Msa0414070 | Msa0610770 | 0.801567 | 8.471707e-49 | -8.615850e-47 |
| Msa0416320 | Msa0610770 | 0.833639 | 4.752449e-56 | -8.615850e-47 |
| Msa0471790 | Msa0610770 | 0.819342 | 1.221423e-52 | -8.615850e-47 |
| Msa0288240 | Msa0610770 | 0.813230 | 2.843285e-51 | -8.615850e-47 |
| Msa0288330 | Msa0610770 | 0.809479 | 1.853761e-50 | -8.615850e-47 |
| Msa0302650 | Msa0610770 | 0.829408 | 5.235308e-55 | -8.615850e-47 |
| Msa0304700 | Msa0610770 | 0.803265 | 3.785998e-49 | -8.615850e-47 |
| Msa0326670 | Msa0610770 | 0.810303 | 1.232522e-50 | -8.615850e-47 |
| Msa0336270 | Msa0610770 | 0.821121 | 4.778514e-53 | -8.615850e-47 |
| Msa0339870 | Msa0610770 | 0.808808 | 2.581475e-50 | -8.615850e-47 |
| Msa0349680 | Msa0610770 | 0.814088 | 1.840357e-51 | -8.615850e-47 |
| Msa0491500 | Msa0610770 | 0.806025 | 1.004835e-49 | -8.615850e-47 |
| Msa0505660 | Msa0610770 | 0.809927 | 1.485567e-50 | -8.615850e-47 |
| Msa0530380 | Msa0610770 | 0.832940 | 7.094405e-56 | -8.615850e-47 |
| Msa0579340 | Msa0610770 | 0.853495 | 2.301107e-61 | -8.615850e-47 |
| Msa0581920 | Msa0610770 | 0.936335 | 2.046223e-97 | -8.615850e-47 |
| Msa0587290 | Msa0610770 | 0.806900 | 6.571328e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610770 | MtrunA17_Chr4g0043861 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 4.75e-123 | 343 |
| Msa0610770 | MtrunA17_Chr1g0160811 | 66.871 | 163 | 53 | 1 | 3 | 164 | 4 | 166 | 1.25e-76 | 226 |
| Msa0610770 | MtrunA17_Chr3g0111361 | 54.601 | 163 | 74 | 0 | 1 | 163 | 1 | 163 | 3.52e-64 | 194 |
| Msa0610770 | MtrunA17_Chr8g0393081 | 51.220 | 164 | 80 | 0 | 1 | 164 | 17 | 180 | 5.77e-58 | 179 |
| Msa0610770 | MtrunA17_Chr2g0280981 | 51.235 | 162 | 79 | 0 | 3 | 164 | 2 | 163 | 1.38e-57 | 177 |
| Msa0610770 | MtrunA17_Chr6g0478401 | 49.390 | 164 | 83 | 0 | 1 | 164 | 13 | 176 | 7.57e-56 | 174 |
| Msa0610770 | MtrunA17_Chr8g0380381 | 40.000 | 160 | 95 | 1 | 1 | 159 | 85 | 244 | 1.73e-36 | 126 |
| Msa0610770 | MtrunA17_Chr8g0352751 | 37.654 | 162 | 100 | 1 | 1 | 161 | 1 | 162 | 2.28e-33 | 116 |
| Msa0610770 | MtrunA17_Chr2g0292461 | 38.889 | 162 | 94 | 3 | 1 | 159 | 168 | 327 | 4.15e-32 | 117 |
| Msa0610770 | MtrunA17_Chr3g0083541 | 37.952 | 166 | 94 | 2 | 1 | 161 | 239 | 400 | 1.72e-30 | 114 |
| Msa0610770 | MtrunA17_Chr2g0290631 | 38.158 | 152 | 92 | 1 | 1 | 150 | 1 | 152 | 1.66e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610770 | AT1G70810.1 | 55.488 | 164 | 73 | 0 | 1 | 164 | 1 | 164 | 2.59e-63 | 192 |
| Msa0610770 | AT1G48590.4 | 55.090 | 167 | 72 | 1 | 1 | 167 | 6 | 169 | 1.21e-61 | 188 |
| Msa0610770 | AT1G48590.1 | 55.090 | 167 | 72 | 1 | 1 | 167 | 6 | 169 | 1.21e-61 | 188 |
| Msa0610770 | AT1G48590.2 | 55.090 | 167 | 72 | 1 | 1 | 167 | 37 | 200 | 1.46e-61 | 189 |
| Msa0610770 | AT1G70790.3 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.87e-60 | 184 |
| Msa0610770 | AT1G70790.2 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.87e-60 | 184 |
| Msa0610770 | AT1G70790.1 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.87e-60 | 184 |
| Msa0610770 | AT3G17980.1 | 51.829 | 164 | 79 | 0 | 1 | 164 | 13 | 176 | 1.34e-58 | 181 |
| Msa0610770 | AT1G23140.1 | 51.852 | 162 | 78 | 0 | 1 | 162 | 1 | 162 | 3.32e-58 | 179 |
| Msa0610770 | AT1G73580.1 | 48.780 | 164 | 84 | 0 | 1 | 164 | 4 | 167 | 5.90e-58 | 179 |
| Msa0610770 | AT2G01540.1 | 53.659 | 164 | 69 | 2 | 5 | 166 | 6 | 164 | 1.15e-57 | 179 |
| Msa0610770 | AT1G70800.1 | 50.955 | 157 | 77 | 0 | 1 | 157 | 10 | 166 | 2.99e-55 | 172 |
| Msa0610770 | AT1G66360.1 | 45.402 | 174 | 93 | 1 | 1 | 172 | 1 | 174 | 2.90e-53 | 167 |
| Msa0610770 | AT5G37740.1 | 46.707 | 167 | 86 | 1 | 1 | 164 | 1 | 167 | 1.29e-51 | 163 |
| Msa0610770 | AT5G37740.2 | 44.068 | 177 | 86 | 2 | 1 | 164 | 1 | 177 | 3.50e-48 | 154 |
| Msa0610770 | AT1G70790.4 | 55.385 | 130 | 56 | 1 | 39 | 166 | 3 | 132 | 3.64e-46 | 148 |
| Msa0610770 | AT1G48590.3 | 45.509 | 167 | 56 | 2 | 1 | 167 | 37 | 168 | 3.21e-43 | 141 |
| Msa0610770 | AT4G05330.2 | 41.875 | 160 | 88 | 3 | 1 | 157 | 140 | 297 | 2.85e-34 | 122 |
| Msa0610770 | AT4G21160.2 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.04e-33 | 122 |
| Msa0610770 | AT4G21160.3 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.04e-33 | 122 |
| Msa0610770 | AT4G21160.1 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.04e-33 | 122 |
| Msa0610770 | AT4G21160.4 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.04e-33 | 122 |
| Msa0610770 | AT4G05330.3 | 41.875 | 160 | 88 | 3 | 1 | 157 | 175 | 332 | 1.04e-33 | 122 |
| Msa0610770 | AT4G05330.1 | 41.875 | 160 | 88 | 3 | 1 | 157 | 175 | 332 | 1.04e-33 | 122 |
| Msa0610770 | AT3G07940.1 | 39.506 | 162 | 97 | 1 | 1 | 161 | 224 | 385 | 2.88e-32 | 119 |
| Msa0610770 | AT5G47710.1 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.93e-31 | 111 |
| Msa0610770 | AT5G47710.2 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.93e-31 | 111 |
| Msa0610770 | AT5G47710.3 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.93e-31 | 111 |
| Msa0610770 | AT5G47710.4 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.93e-31 | 111 |
Find 44 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCTTAAACTCATTTCT+TGG | 0.237962 | 4_2:-58654953 | None:intergenic |
| TTTCACTGTGGACGACAAAA+TGG | 0.248123 | 4_2:+58654776 | Msa0610770:CDS |
| TCATTATCAAATTAAGATTA+AGG | 0.276142 | 4_2:-58655161 | None:intergenic |
| GTCAGTTCTTCATTCCATTC+AGG | 0.282274 | 4_2:-58653949 | None:intergenic |
| ATCTTCACACATTGGAGATA+TGG | 0.313339 | 4_2:-58654822 | None:intergenic |
| GTTTCGATGGCAAACATTCT+AGG | 0.356912 | 4_2:+58653562 | Msa0610770:exon |
| GCTAGGCAATTAGTCGTATC+TGG | 0.362744 | 4_2:-58654891 | None:intergenic |
| TGATGTCAAATTCACTGATA+TGG | 0.369022 | 4_2:+58655181 | Msa0610770:three_prime_UTR |
| GTCTTGACTACATGTCCATC+TGG | 0.383427 | 4_2:-58654861 | None:intergenic |
| CTCGGATAAGCCTTTGCCTT+CGG | 0.389439 | 4_2:-58655033 | None:intergenic |
| ATGCAAACACAAGGTTGTTA+AGG | 0.454129 | 4_2:+58653536 | Msa0610770:five_prime_UTR |
| CAATCTTACATAGTAACTTC+AGG | 0.461633 | 4_2:-58655135 | None:intergenic |
| TCCATGGTGACAAGAACATA+AGG | 0.466228 | 4_2:-58653649 | None:intergenic |
| GTTGTTAAGGTTGGTTTCGA+TGG | 0.484495 | 4_2:+58653549 | Msa0610770:exon |
| CCATACGCAGCTACTCTCTT+CGG | 0.489124 | 4_2:-58654913 | None:intergenic |
| CTAACTAACTTGTTCTTCCA+TGG | 0.492512 | 4_2:-58653665 | None:intergenic |
| AGTAGCTGCGTATGGAGAGA+TGG | 0.493455 | 4_2:+58654921 | Msa0610770:CDS |
| AAGATAACTGCCATCCTGAA+TGG | 0.495110 | 4_2:+58653935 | Msa0610770:CDS |
| TGTTAACACACCAATACATC+TGG | 0.500731 | 4_2:+58653987 | Msa0610770:CDS |
| TTCACTGTGGACGACAAAAT+GGG | 0.505157 | 4_2:+58654777 | Msa0610770:CDS |
| ATATCTCCAATGTGTGAAGA+TGG | 0.506001 | 4_2:+58654824 | Msa0610770:CDS |
| AAACACAAGGTTGTTAAGGT+TGG | 0.510802 | 4_2:+58653540 | Msa0610770:five_prime_UTR |
| TGAGTACTGACCAGATGTAT+TGG | 0.524936 | 4_2:-58653997 | None:intergenic |
| TATCTCCAATGTGTGAAGAT+GGG | 0.525049 | 4_2:+58654825 | Msa0610770:CDS |
| CCGAAGAGAGTAGCTGCGTA+TGG | 0.539890 | 4_2:+58654913 | Msa0610770:CDS |
| GACAAGAACATAAGGGTCGC+TGG | 0.578982 | 4_2:-58653641 | None:intergenic |
| AGATTGAGAAATGTTGACTC+TGG | 0.584076 | 4_2:+58654969 | Msa0610770:CDS |
| CCCTTATGTTCTTGTCACCA+TGG | 0.587591 | 4_2:+58653648 | Msa0610770:CDS |
| CCATGGTGACAAGAACATAA+GGG | 0.590675 | 4_2:-58653648 | None:intergenic |
| CGCAGCTACTCTCTTCGGCT+AGG | 0.597984 | 4_2:-58654908 | None:intergenic |
| CTAATGCATAAAGTTAGAGA+AGG | 0.604755 | 4_2:-58655077 | None:intergenic |
| GTTACAGAATCCGAAGGCAA+AGG | 0.605128 | 4_2:+58655023 | Msa0610770:CDS |
| AAGTACTAGTCGAAATTGAG+TGG | 0.607422 | 4_2:+58654994 | Msa0610770:CDS |
| TCTTGACTACATGTCCATCT+GGG | 0.611492 | 4_2:-58654860 | None:intergenic |
| GGGTTGAGCGATCTCCCAGA+TGG | 0.612527 | 4_2:+58654846 | Msa0610770:CDS |
| GTTCTTCATTCCATTCAGGA+TGG | 0.627122 | 4_2:-58653945 | None:intergenic |
| ATCTCCAATGTGTGAAGATG+GGG | 0.633945 | 4_2:+58654826 | Msa0610770:CDS |
| TCAACCCCATCTTCACACAT+TGG | 0.658196 | 4_2:-58654830 | None:intergenic |
| CGACAAAGACACTTTCACTG+TGG | 0.661032 | 4_2:+58654764 | Msa0610770:CDS |
| GTACTCCTAAAACTCAACCT+CGG | 0.669415 | 4_2:-58655051 | None:intergenic |
| ATTGATGTTACAGAATCCGA+AGG | 0.687927 | 4_2:+58655017 | Msa0610770:CDS |
| CGAAGGCAAAGGCTTATCCG+AGG | 0.695987 | 4_2:+58655034 | Msa0610770:CDS |
| AAGTTGTGCATGCAAACACA+AGG | 0.715116 | 4_2:+58653527 | Msa0610770:five_prime_UTR |
| TCGCTGGTACGAGAATCATG+AGG | 0.744769 | 4_2:-58653625 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAAAGGAAAAA+TGG | + | chr4_2:58654065-58654084 | Msa0610770:intron | 10.0% |
| !! | AAATAAATAAAAGGAAAAAT+GGG | + | chr4_2:58654066-58654085 | Msa0610770:intron | 10.0% |
| !!! | GAAATTTTGTTTATTATTAA+AGG | + | chr4_2:58655207-58655226 | Msa0610770:three_prime_UTR | 10.0% |
| !! | AAAATAAATAAAAGGAAAAA+TGG | + | chr4_2:58654065-58654084 | Msa0610770:intron | 10.0% |
| !! | AAATAAATAAAAGGAAAAAT+GGG | + | chr4_2:58654066-58654085 | Msa0610770:intron | 10.0% |
| !! | TTATGATATGTTACTATAAA+TGG | + | chr4_2:58653885-58653904 | Msa0610770:intron | 15.0% |
| !! | CAAAAGAGAAAATAAATAAA+AGG | + | chr4_2:58654057-58654076 | Msa0610770:intron | 15.0% |
| !!! | TTATCTTAGAAATTTTATCT+CGG | - | chr4_2:58654283-58654302 | None:intergenic | 15.0% |
| !!! | ATCTTAGAAATTTTATCTTA+GGG | - | chr4_2:58654312-58654331 | None:intergenic | 15.0% |
| !!! | AATCTTAGAAATTTTATCTT+AGG | - | chr4_2:58654313-58654332 | None:intergenic | 15.0% |
| !! | TCATTATCAAATTAAGATTA+AGG | - | chr4_2:58655164-58655183 | None:intergenic | 15.0% |
| !! | TTATGATATGTTACTATAAA+TGG | + | chr4_2:58653885-58653904 | Msa0610770:intron | 15.0% |
| !! | CAAAAGAGAAAATAAATAAA+AGG | + | chr4_2:58654057-58654076 | Msa0610770:intron | 15.0% |
| !!! | TTATCTTAGAAATTTTATCT+CGG | - | chr4_2:58654283-58654302 | None:intergenic | 15.0% |
| !!! | ATCTTAGAAATTTTATCTTA+GGG | - | chr4_2:58654312-58654331 | None:intergenic | 15.0% |
| !!! | AATCTTAGAAATTTTATCTT+AGG | - | chr4_2:58654313-58654332 | None:intergenic | 15.0% |
| !! | TCATTATCAAATTAAGATTA+AGG | - | chr4_2:58655164-58655183 | None:intergenic | 15.0% |
| !!! | ATCAACATAAAATACTGATT+TGG | - | chr4_2:58653746-58653765 | None:intergenic | 20.0% |
| !!! | ACTAAGATCTTTCTTTTTAT+TGG | + | chr4_2:58653826-58653845 | Msa0610770:intron | 20.0% |
| !! | ATAGTAGTCTAATAAATTAG+AGG | - | chr4_2:58654145-58654164 | None:intergenic | 20.0% |
| !!! | TCAATTTGAAACGAAAAAAA+CGG | - | chr4_2:58654685-58654704 | None:intergenic | 20.0% |
| !!! | ATCAACATAAAATACTGATT+TGG | - | chr4_2:58653746-58653765 | None:intergenic | 20.0% |
| !!! | ACTAAGATCTTTCTTTTTAT+TGG | + | chr4_2:58653826-58653845 | Msa0610770:intron | 20.0% |
| !! | ATAGTAGTCTAATAAATTAG+AGG | - | chr4_2:58654145-58654164 | None:intergenic | 20.0% |
| !!! | TCAATTTGAAACGAAAAAAA+CGG | - | chr4_2:58654685-58654704 | None:intergenic | 20.0% |
| ! | TTCTGCAACTTAAAAAAAGT+TGG | - | chr4_2:58654027-58654046 | None:intergenic | 25.0% |
| !!! | AATTTTTTATGCGTTTCCTT+TGG | + | chr4_2:58654186-58654205 | Msa0610770:intron | 25.0% |
| ! | ATTGAGATTTGAATAACCAT+AGG | + | chr4_2:58654438-58654457 | Msa0610770:intron | 25.0% |
| ! | ATGAGAATCACAAACAAATA+CGG | + | chr4_2:58654590-58654609 | Msa0610770:intron | 25.0% |
| ! | ACCACCAACAATTTAATATT+AGG | - | chr4_2:58654712-58654731 | None:intergenic | 25.0% |
| ! | TCAATCTTAAACTCATTTCT+TGG | - | chr4_2:58654956-58654975 | None:intergenic | 25.0% |
| ! | TTCTGCAACTTAAAAAAAGT+TGG | - | chr4_2:58654027-58654046 | None:intergenic | 25.0% |
| !!! | AATTTTTTATGCGTTTCCTT+TGG | + | chr4_2:58654186-58654205 | Msa0610770:intron | 25.0% |
| ! | ATTGAGATTTGAATAACCAT+AGG | + | chr4_2:58654438-58654457 | Msa0610770:intron | 25.0% |
| ! | ATGAGAATCACAAACAAATA+CGG | + | chr4_2:58654590-58654609 | Msa0610770:intron | 25.0% |
| ! | ACCACCAACAATTTAATATT+AGG | - | chr4_2:58654712-58654731 | None:intergenic | 25.0% |
| ! | TCAATCTTAAACTCATTTCT+TGG | - | chr4_2:58654956-58654975 | None:intergenic | 25.0% |
| ATCAGACTTCGTATCAAAAA+AGG | + | chr4_2:58653589-58653608 | Msa0610770:CDS | 30.0% | |
| TCCAAGAACTGATTGAAATT+TGG | + | chr4_2:58653767-58653786 | Msa0610770:intron | 30.0% | |
| TCCAAATTTCAATCAGTTCT+TGG | - | chr4_2:58653771-58653790 | None:intergenic | 30.0% | |
| ATCACACAAGTATAAACCAA+AGG | - | chr4_2:58654205-58654224 | None:intergenic | 30.0% | |
| TGGTTTATACTTGTGTGATT+TGG | + | chr4_2:58654206-58654225 | Msa0610770:intron | 30.0% | |
| CTCAGTTGAAGATAAGTTTA+AGG | - | chr4_2:58654344-58654363 | None:intergenic | 30.0% | |
| TTGAATAACCATAGGATCAA+AGG | + | chr4_2:58654446-58654465 | Msa0610770:intron | 30.0% | |
| TGAATAACCATAGGATCAAA+GGG | + | chr4_2:58654447-58654466 | Msa0610770:intron | 30.0% | |
| AAGTAATGTAGCCTAACAAA+TGG | + | chr4_2:58654538-58654557 | Msa0610770:intron | 30.0% | |
| TGTGATTTAAGCCATTTGTT+AGG | - | chr4_2:58654552-58654571 | None:intergenic | 30.0% | |
| CGAGCCTAATATTAAATTGT+TGG | + | chr4_2:58654705-58654724 | Msa0610770:intron | 30.0% | |
| GCCTAATATTAAATTGTTGG+TGG | + | chr4_2:58654708-58654727 | Msa0610770:intron | 30.0% | |
| CTAATGCATAAAGTTAGAGA+AGG | - | chr4_2:58655080-58655099 | None:intergenic | 30.0% | |
| CAATCTTACATAGTAACTTC+AGG | - | chr4_2:58655138-58655157 | None:intergenic | 30.0% | |
| TGATGTCAAATTCACTGATA+TGG | + | chr4_2:58655181-58655200 | Msa0610770:three_prime_UTR | 30.0% | |
| ATCAGACTTCGTATCAAAAA+AGG | + | chr4_2:58653589-58653608 | Msa0610770:CDS | 30.0% | |
| TCCAAGAACTGATTGAAATT+TGG | + | chr4_2:58653767-58653786 | Msa0610770:intron | 30.0% | |
| TCCAAATTTCAATCAGTTCT+TGG | - | chr4_2:58653771-58653790 | None:intergenic | 30.0% | |
| ATCACACAAGTATAAACCAA+AGG | - | chr4_2:58654205-58654224 | None:intergenic | 30.0% | |
| TGGTTTATACTTGTGTGATT+TGG | + | chr4_2:58654206-58654225 | Msa0610770:intron | 30.0% | |
| CTCAGTTGAAGATAAGTTTA+AGG | - | chr4_2:58654344-58654363 | None:intergenic | 30.0% | |
| TTGAATAACCATAGGATCAA+AGG | + | chr4_2:58654446-58654465 | Msa0610770:intron | 30.0% | |
| TGAATAACCATAGGATCAAA+GGG | + | chr4_2:58654447-58654466 | Msa0610770:intron | 30.0% | |
| AAGTAATGTAGCCTAACAAA+TGG | + | chr4_2:58654538-58654557 | Msa0610770:intron | 30.0% | |
| TGTGATTTAAGCCATTTGTT+AGG | - | chr4_2:58654552-58654571 | None:intergenic | 30.0% | |
| CGAGCCTAATATTAAATTGT+TGG | + | chr4_2:58654705-58654724 | Msa0610770:intron | 30.0% | |
| GCCTAATATTAAATTGTTGG+TGG | + | chr4_2:58654708-58654727 | Msa0610770:intron | 30.0% | |
| CTAATGCATAAAGTTAGAGA+AGG | - | chr4_2:58655080-58655099 | None:intergenic | 30.0% | |
| CAATCTTACATAGTAACTTC+AGG | - | chr4_2:58655138-58655157 | None:intergenic | 30.0% | |
| TGATGTCAAATTCACTGATA+TGG | + | chr4_2:58655181-58655200 | Msa0610770:three_prime_UTR | 30.0% | |
| ATGCAAACACAAGGTTGTTA+AGG | + | chr4_2:58653536-58653555 | Msa0610770:five_prime_UTR | 35.0% | |
| AAACACAAGGTTGTTAAGGT+TGG | + | chr4_2:58653540-58653559 | Msa0610770:five_prime_UTR | 35.0% | |
| !! | CTAACTAACTTGTTCTTCCA+TGG | - | chr4_2:58653668-58653687 | None:intergenic | 35.0% |
| TGTTAACACACCAATACATC+TGG | + | chr4_2:58653987-58654006 | Msa0610770:CDS | 35.0% | |
| !! | CAAGTTTTTGGACAACGATA+TGG | - | chr4_2:58654394-58654413 | None:intergenic | 35.0% |
| CATATCGTTGTCCAAAAACT+TGG | + | chr4_2:58654392-58654411 | Msa0610770:intron | 35.0% | |
| AACTGAGTTCATCACAAACT+TGG | + | chr4_2:58654470-58654489 | Msa0610770:intron | 35.0% | |
| ATCTTCACACATTGGAGATA+TGG | - | chr4_2:58654825-58654844 | None:intergenic | 35.0% | |
| ATATCTCCAATGTGTGAAGA+TGG | + | chr4_2:58654824-58654843 | Msa0610770:CDS | 35.0% | |
| TATCTCCAATGTGTGAAGAT+GGG | + | chr4_2:58654825-58654844 | Msa0610770:CDS | 35.0% | |
| !! | AGATTGAGAAATGTTGACTC+TGG | + | chr4_2:58654969-58654988 | Msa0610770:CDS | 35.0% |
| AAGTACTAGTCGAAATTGAG+TGG | + | chr4_2:58654994-58655013 | Msa0610770:CDS | 35.0% | |
| ATTGATGTTACAGAATCCGA+AGG | + | chr4_2:58655017-58655036 | Msa0610770:CDS | 35.0% | |
| ATGCAAACACAAGGTTGTTA+AGG | + | chr4_2:58653536-58653555 | Msa0610770:five_prime_UTR | 35.0% | |
| AAACACAAGGTTGTTAAGGT+TGG | + | chr4_2:58653540-58653559 | Msa0610770:five_prime_UTR | 35.0% | |
| !! | CTAACTAACTTGTTCTTCCA+TGG | - | chr4_2:58653668-58653687 | None:intergenic | 35.0% |
| TGTTAACACACCAATACATC+TGG | + | chr4_2:58653987-58654006 | Msa0610770:CDS | 35.0% | |
| !! | CAAGTTTTTGGACAACGATA+TGG | - | chr4_2:58654394-58654413 | None:intergenic | 35.0% |
| CATATCGTTGTCCAAAAACT+TGG | + | chr4_2:58654392-58654411 | Msa0610770:intron | 35.0% | |
| AACTGAGTTCATCACAAACT+TGG | + | chr4_2:58654470-58654489 | Msa0610770:intron | 35.0% | |
| ATCTTCACACATTGGAGATA+TGG | - | chr4_2:58654825-58654844 | None:intergenic | 35.0% | |
| ATATCTCCAATGTGTGAAGA+TGG | + | chr4_2:58654824-58654843 | Msa0610770:CDS | 35.0% | |
| TATCTCCAATGTGTGAAGAT+GGG | + | chr4_2:58654825-58654844 | Msa0610770:CDS | 35.0% | |
| !! | AGATTGAGAAATGTTGACTC+TGG | + | chr4_2:58654969-58654988 | Msa0610770:CDS | 35.0% |
| AAGTACTAGTCGAAATTGAG+TGG | + | chr4_2:58654994-58655013 | Msa0610770:CDS | 35.0% | |
| ATTGATGTTACAGAATCCGA+AGG | + | chr4_2:58655017-58655036 | Msa0610770:CDS | 35.0% | |
| AAGTTGTGCATGCAAACACA+AGG | + | chr4_2:58653527-58653546 | Msa0610770:five_prime_UTR | 40.0% | |
| !! | GTTGTTAAGGTTGGTTTCGA+TGG | + | chr4_2:58653549-58653568 | Msa0610770:exon | 40.0% |
| GTTTCGATGGCAAACATTCT+AGG | + | chr4_2:58653562-58653581 | Msa0610770:exon | 40.0% | |
| CCATGGTGACAAGAACATAA+GGG | - | chr4_2:58653651-58653670 | None:intergenic | 40.0% | |
| TCCATGGTGACAAGAACATA+AGG | - | chr4_2:58653652-58653671 | None:intergenic | 40.0% | |
| AAGATAACTGCCATCCTGAA+TGG | + | chr4_2:58653935-58653954 | Msa0610770:CDS | 40.0% | |
| GTTCTTCATTCCATTCAGGA+TGG | - | chr4_2:58653948-58653967 | None:intergenic | 40.0% | |
| GTCAGTTCTTCATTCCATTC+AGG | - | chr4_2:58653952-58653971 | None:intergenic | 40.0% | |
| !! | TGAGTACTGACCAGATGTAT+TGG | - | chr4_2:58654000-58654019 | None:intergenic | 40.0% |
| GTTCATCACAAACTTGGTTG+CGG | + | chr4_2:58654476-58654495 | Msa0610770:intron | 40.0% | |
| TGATGTTGTAGCCTAGATGA+AGG | + | chr4_2:58654648-58654667 | Msa0610770:intron | 40.0% | |
| GATGTTGTAGCCTAGATGAA+GGG | + | chr4_2:58654649-58654668 | Msa0610770:intron | 40.0% | |
| TTTCACTGTGGACGACAAAA+TGG | + | chr4_2:58654776-58654795 | Msa0610770:CDS | 40.0% | |
| TTCACTGTGGACGACAAAAT+GGG | + | chr4_2:58654777-58654796 | Msa0610770:CDS | 40.0% | |
| ATCTCCAATGTGTGAAGATG+GGG | + | chr4_2:58654826-58654845 | Msa0610770:CDS | 40.0% | |
| TCTTGACTACATGTCCATCT+GGG | - | chr4_2:58654863-58654882 | None:intergenic | 40.0% | |
| ! | CTTATCCGAGGTTGAGTTTT+AGG | + | chr4_2:58655046-58655065 | Msa0610770:CDS | 40.0% |
| GTACTCCTAAAACTCAACCT+CGG | - | chr4_2:58655054-58655073 | None:intergenic | 40.0% | |
| AAGTTGTGCATGCAAACACA+AGG | + | chr4_2:58653527-58653546 | Msa0610770:five_prime_UTR | 40.0% | |
| !! | GTTGTTAAGGTTGGTTTCGA+TGG | + | chr4_2:58653549-58653568 | Msa0610770:exon | 40.0% |
| GTTTCGATGGCAAACATTCT+AGG | + | chr4_2:58653562-58653581 | Msa0610770:exon | 40.0% | |
| CCATGGTGACAAGAACATAA+GGG | - | chr4_2:58653651-58653670 | None:intergenic | 40.0% | |
| TCCATGGTGACAAGAACATA+AGG | - | chr4_2:58653652-58653671 | None:intergenic | 40.0% | |
| AAGATAACTGCCATCCTGAA+TGG | + | chr4_2:58653935-58653954 | Msa0610770:CDS | 40.0% | |
| GTTCTTCATTCCATTCAGGA+TGG | - | chr4_2:58653948-58653967 | None:intergenic | 40.0% | |
| GTCAGTTCTTCATTCCATTC+AGG | - | chr4_2:58653952-58653971 | None:intergenic | 40.0% | |
| !! | TGAGTACTGACCAGATGTAT+TGG | - | chr4_2:58654000-58654019 | None:intergenic | 40.0% |
| GTTCATCACAAACTTGGTTG+CGG | + | chr4_2:58654476-58654495 | Msa0610770:intron | 40.0% | |
| TGATGTTGTAGCCTAGATGA+AGG | + | chr4_2:58654648-58654667 | Msa0610770:intron | 40.0% | |
| GATGTTGTAGCCTAGATGAA+GGG | + | chr4_2:58654649-58654668 | Msa0610770:intron | 40.0% | |
| TTTCACTGTGGACGACAAAA+TGG | + | chr4_2:58654776-58654795 | Msa0610770:CDS | 40.0% | |
| TTCACTGTGGACGACAAAAT+GGG | + | chr4_2:58654777-58654796 | Msa0610770:CDS | 40.0% | |
| ATCTCCAATGTGTGAAGATG+GGG | + | chr4_2:58654826-58654845 | Msa0610770:CDS | 40.0% | |
| TCTTGACTACATGTCCATCT+GGG | - | chr4_2:58654863-58654882 | None:intergenic | 40.0% | |
| ! | CTTATCCGAGGTTGAGTTTT+AGG | + | chr4_2:58655046-58655065 | Msa0610770:CDS | 40.0% |
| GTACTCCTAAAACTCAACCT+CGG | - | chr4_2:58655054-58655073 | None:intergenic | 40.0% | |
| CCCTTATGTTCTTGTCACCA+TGG | + | chr4_2:58653648-58653667 | Msa0610770:CDS | 45.0% | |
| ! | GTAGACTCTCGCCAAGTTTT+TGG | - | chr4_2:58654406-58654425 | None:intergenic | 45.0% |
| CTCAGTTCCCTTTGATCCTA+TGG | - | chr4_2:58654457-58654476 | None:intergenic | 45.0% | |
| CGACAAAGACACTTTCACTG+TGG | + | chr4_2:58654764-58654783 | Msa0610770:CDS | 45.0% | |
| TCAACCCCATCTTCACACAT+TGG | - | chr4_2:58654833-58654852 | None:intergenic | 45.0% | |
| GTCTTGACTACATGTCCATC+TGG | - | chr4_2:58654864-58654883 | None:intergenic | 45.0% | |
| GCTAGGCAATTAGTCGTATC+TGG | - | chr4_2:58654894-58654913 | None:intergenic | 45.0% | |
| GTTACAGAATCCGAAGGCAA+AGG | + | chr4_2:58655023-58655042 | Msa0610770:CDS | 45.0% | |
| CCCTTATGTTCTTGTCACCA+TGG | + | chr4_2:58653648-58653667 | Msa0610770:CDS | 45.0% | |
| ! | GTAGACTCTCGCCAAGTTTT+TGG | - | chr4_2:58654406-58654425 | None:intergenic | 45.0% |
| CTCAGTTCCCTTTGATCCTA+TGG | - | chr4_2:58654457-58654476 | None:intergenic | 45.0% | |
| CGACAAAGACACTTTCACTG+TGG | + | chr4_2:58654764-58654783 | Msa0610770:CDS | 45.0% | |
| TCAACCCCATCTTCACACAT+TGG | - | chr4_2:58654833-58654852 | None:intergenic | 45.0% | |
| GTCTTGACTACATGTCCATC+TGG | - | chr4_2:58654864-58654883 | None:intergenic | 45.0% | |
| GCTAGGCAATTAGTCGTATC+TGG | - | chr4_2:58654894-58654913 | None:intergenic | 45.0% | |
| GTTACAGAATCCGAAGGCAA+AGG | + | chr4_2:58655023-58655042 | Msa0610770:CDS | 45.0% | |
| TCGCTGGTACGAGAATCATG+AGG | - | chr4_2:58653628-58653647 | None:intergenic | 50.0% | |
| GACAAGAACATAAGGGTCGC+TGG | - | chr4_2:58653644-58653663 | None:intergenic | 50.0% | |
| TCTGTGTGCACCCTTCATCT+AGG | - | chr4_2:58654662-58654681 | None:intergenic | 50.0% | |
| CCATACGCAGCTACTCTCTT+CGG | - | chr4_2:58654916-58654935 | None:intergenic | 50.0% | |
| AGTAGCTGCGTATGGAGAGA+TGG | + | chr4_2:58654921-58654940 | Msa0610770:CDS | 50.0% | |
| CTCGGATAAGCCTTTGCCTT+CGG | - | chr4_2:58655036-58655055 | None:intergenic | 50.0% | |
| TCGCTGGTACGAGAATCATG+AGG | - | chr4_2:58653628-58653647 | None:intergenic | 50.0% | |
| GACAAGAACATAAGGGTCGC+TGG | - | chr4_2:58653644-58653663 | None:intergenic | 50.0% | |
| TCTGTGTGCACCCTTCATCT+AGG | - | chr4_2:58654662-58654681 | None:intergenic | 50.0% | |
| CCATACGCAGCTACTCTCTT+CGG | - | chr4_2:58654916-58654935 | None:intergenic | 50.0% | |
| AGTAGCTGCGTATGGAGAGA+TGG | + | chr4_2:58654921-58654940 | Msa0610770:CDS | 50.0% | |
| CTCGGATAAGCCTTTGCCTT+CGG | - | chr4_2:58655036-58655055 | None:intergenic | 50.0% | |
| CCGAAGAGAGTAGCTGCGTA+TGG | + | chr4_2:58654913-58654932 | Msa0610770:CDS | 55.0% | |
| CGAAGGCAAAGGCTTATCCG+AGG | + | chr4_2:58655034-58655053 | Msa0610770:CDS | 55.0% | |
| CCGAAGAGAGTAGCTGCGTA+TGG | + | chr4_2:58654913-58654932 | Msa0610770:CDS | 55.0% | |
| CGAAGGCAAAGGCTTATCCG+AGG | + | chr4_2:58655034-58655053 | Msa0610770:CDS | 55.0% | |
| GGGTTGAGCGATCTCCCAGA+TGG | + | chr4_2:58654846-58654865 | Msa0610770:CDS | 60.0% | |
| CGCAGCTACTCTCTTCGGCT+AGG | - | chr4_2:58654911-58654930 | None:intergenic | 60.0% | |
| GGGTTGAGCGATCTCCCAGA+TGG | + | chr4_2:58654846-58654865 | Msa0610770:CDS | 60.0% | |
| CGCAGCTACTCTCTTCGGCT+AGG | - | chr4_2:58654911-58654930 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58653488 | 58655228 | 58653488 | ID=Msa0610770;Name=Msa0610770 |
| chr4_2 | mRNA | 58653488 | 58655228 | 58653488 | ID=Msa0610770-mRNA-1;Parent=Msa0610770;Name=Msa0610770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=80|1|1|1|1|1|3|161|172 |
| chr4_2 | exon | 58653488 | 58653678 | 58653488 | ID=Msa0610770-mRNA-1:exon:15453;Parent=Msa0610770-mRNA-1 |
| chr4_2 | exon | 58653913 | 58654008 | 58653913 | ID=Msa0610770-mRNA-1:exon:15454;Parent=Msa0610770-mRNA-1 |
| chr4_2 | exon | 58654756 | 58655228 | 58654756 | ID=Msa0610770-mRNA-1:exon:15455;Parent=Msa0610770-mRNA-1 |
| chr4_2 | five_prime_UTR | 58653488 | 58653567 | 58653488 | ID=Msa0610770-mRNA-1:five_prime_utr;Parent=Msa0610770-mRNA-1 |
| chr4_2 | CDS | 58653568 | 58653678 | 58653568 | ID=Msa0610770-mRNA-1:cds;Parent=Msa0610770-mRNA-1 |
| chr4_2 | CDS | 58653913 | 58654008 | 58653913 | ID=Msa0610770-mRNA-1:cds;Parent=Msa0610770-mRNA-1 |
| chr4_2 | CDS | 58654756 | 58655067 | 58654756 | ID=Msa0610770-mRNA-1:cds;Parent=Msa0610770-mRNA-1 |
| chr4_2 | three_prime_UTR | 58655068 | 58655228 | 58655068 | ID=Msa0610770-mRNA-1:three_prime_utr;Parent=Msa0610770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
