Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350000 | XP_003598693.2 | 96.510 | 831 | 29 | 0 | 2 | 832 | 3 | 833 | 0.0 | 1612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350000 | sp|Q10FT0|PUB24_ORYSJ | 28.228 | 666 | 409 | 20 | 230 | 832 | 160 | 819 | 1.12e-44 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350000 | A0A396INB7 | 96.510 | 831 | 29 | 0 | 2 | 832 | 3 | 833 | 0.0 | 1612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058270 | Msa0350000 | 0.812612 | 3.884424e-51 | -8.615850e-47 |
| Msa0342070 | Msa0350000 | 0.817462 | 3.256665e-52 | -8.615850e-47 |
| Msa0347650 | Msa0350000 | 0.808967 | 2.386775e-50 | -8.615850e-47 |
| Msa0350000 | Msa0365490 | 0.808372 | 3.198685e-50 | -8.615850e-47 |
| Msa0350000 | Msa0438050 | 0.803413 | 3.527657e-49 | -8.615850e-47 |
| Msa0350000 | Msa0444290 | 0.855002 | 8.445831e-62 | -8.615850e-47 |
| Msa0350000 | Msa0492070 | 0.888602 | 5.102586e-73 | -8.615850e-47 |
| Msa0350000 | Msa0553460 | 0.801280 | 9.701733e-49 | -8.615850e-47 |
| Msa0350000 | Msa0573640 | 0.810017 | 1.420544e-50 | -8.615850e-47 |
| Msa0350000 | Msa0574850 | 0.807911 | 4.009974e-50 | -8.615850e-47 |
| Msa0350000 | Msa0716750 | 0.803507 | 3.372255e-49 | -8.615850e-47 |
| Msa0350000 | Msa0818110 | 0.802820 | 4.680214e-49 | -8.615850e-47 |
| Msa0350000 | Msa0874630 | 0.817452 | 3.274361e-52 | -8.615850e-47 |
| Msa0350000 | Msa0961490 | 0.815284 | 1.000281e-51 | -8.615850e-47 |
| Msa0350000 | Msa0976290 | 0.802390 | 5.738248e-49 | -8.615850e-47 |
| Msa0350000 | Msa1006160 | -0.814358 | 1.604605e-51 | -8.615850e-47 |
| Msa0350000 | Msa1033780 | 0.813856 | 2.070796e-51 | -8.615850e-47 |
| Msa0350000 | Msa1114180 | 0.814294 | 1.658115e-51 | -8.615850e-47 |
| Msa0350000 | Msa1243100 | 0.804775 | 1.837625e-49 | -8.615850e-47 |
| Msa0350000 | Msa1247030 | 0.804191 | 2.431667e-49 | -8.615850e-47 |
| Msa0350000 | Msa1288340 | 0.820532 | 6.528363e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350000 | MtrunA17_Chr3g0084371 | 96.510 | 831 | 29 | 0 | 2 | 832 | 3 | 833 | 0.0 | 1612 |
| Msa0350000 | MtrunA17_Chr8g0346441 | 34.337 | 664 | 420 | 7 | 183 | 832 | 345 | 1006 | 4.32e-104 | 344 |
| Msa0350000 | MtrunA17_Chr7g0275961 | 32.334 | 634 | 414 | 6 | 212 | 832 | 370 | 1001 | 3.21e-91 | 309 |
| Msa0350000 | MtrunA17_Chr3g0144071 | 27.702 | 657 | 419 | 18 | 221 | 832 | 165 | 810 | 1.26e-47 | 182 |
| Msa0350000 | MtrunA17_Chr1g0188041 | 27.751 | 627 | 400 | 18 | 230 | 823 | 392 | 998 | 9.76e-47 | 180 |
| Msa0350000 | MtrunA17_Chr3g0106931 | 32.258 | 155 | 101 | 1 | 296 | 450 | 593 | 743 | 2.61e-12 | 70.9 |
| Msa0350000 | MtrunA17_Chr7g0261371 | 28.495 | 186 | 130 | 2 | 245 | 428 | 502 | 686 | 1.32e-11 | 68.6 |
| Msa0350000 | MtrunA17_Chr1g0205751 | 28.796 | 191 | 122 | 6 | 237 | 419 | 220 | 404 | 2.96e-11 | 67.4 |
| Msa0350000 | MtrunA17_Chr1g0152561 | 27.404 | 208 | 146 | 4 | 255 | 459 | 59 | 264 | 9.66e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350000 | AT1G76390.1 | 28.331 | 653 | 418 | 18 | 223 | 832 | 162 | 807 | 1.69e-44 | 173 |
| Msa0350000 | AT1G76390.2 | 28.331 | 653 | 418 | 18 | 223 | 832 | 162 | 807 | 1.69e-44 | 173 |
| Msa0350000 | AT1G20780.1 | 27.656 | 687 | 458 | 19 | 183 | 832 | 113 | 797 | 5.89e-44 | 171 |
| Msa0350000 | AT1G20780.2 | 27.656 | 687 | 458 | 19 | 183 | 832 | 113 | 797 | 5.89e-44 | 171 |
| Msa0350000 | AT1G20780.3 | 27.656 | 687 | 458 | 19 | 183 | 832 | 113 | 797 | 5.89e-44 | 171 |
| Msa0350000 | AT1G68940.1 | 24.860 | 712 | 460 | 23 | 183 | 832 | 387 | 1085 | 4.42e-36 | 147 |
| Msa0350000 | AT1G68940.2 | 25.688 | 654 | 425 | 21 | 183 | 783 | 387 | 1032 | 1.72e-35 | 145 |
| Msa0350000 | AT1G68940.3 | 25.688 | 654 | 425 | 21 | 183 | 783 | 334 | 979 | 2.14e-35 | 145 |
| Msa0350000 | AT2G23140.1 | 32.903 | 155 | 100 | 1 | 296 | 450 | 586 | 736 | 3.35e-12 | 70.9 |
| Msa0350000 | AT2G23140.2 | 32.903 | 155 | 100 | 1 | 296 | 450 | 583 | 733 | 3.61e-12 | 70.9 |
| Msa0350000 | AT2G23140.4 | 32.903 | 155 | 100 | 1 | 296 | 450 | 583 | 733 | 3.61e-12 | 70.9 |
| Msa0350000 | AT3G01400.1 | 28.333 | 240 | 132 | 6 | 222 | 446 | 52 | 266 | 5.29e-12 | 68.9 |
| Msa0350000 | AT2G23140.3 | 32.903 | 155 | 100 | 1 | 296 | 450 | 394 | 544 | 7.25e-12 | 69.7 |
| Msa0350000 | AT2G23140.5 | 32.903 | 155 | 100 | 1 | 296 | 450 | 394 | 544 | 7.25e-12 | 69.7 |
| Msa0350000 | AT3G46510.1 | 29.048 | 210 | 145 | 3 | 267 | 474 | 365 | 572 | 3.27e-11 | 67.4 |
Find 150 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCCTCAATTTGCTTAAT+AGG | 0.119277 | 3_1:+14473976 | None:intergenic |
| ACATGATGCAGCAAAGTTAT+TGG | 0.194177 | 3_1:-14472930 | Msa0350000:CDS |
| AATAGATGACCTTGAATTAT+AGG | 0.201280 | 3_1:+14471808 | None:intergenic |
| CAAGATGAAATTTGGGAAAA+TGG | 0.205181 | 3_1:-14471010 | Msa0350000:CDS |
| ACTTCTTAGCAATTGAATTA+TGG | 0.217153 | 3_1:+14473561 | None:intergenic |
| AATTTCATTGCGAAATTATC+AGG | 0.234488 | 3_1:-14470983 | Msa0350000:CDS |
| TTGCTAAGAAGTATTGCTTT+TGG | 0.266379 | 3_1:-14473550 | Msa0350000:CDS |
| TAATGGCAACAGCACTTTCT+AGG | 0.266610 | 3_1:-14472161 | Msa0350000:CDS |
| TTCACGACTTATCGAAATAT+TGG | 0.269396 | 3_1:-14471089 | Msa0350000:CDS |
| CATTCATTTATGTGCATGTT+TGG | 0.270562 | 3_1:-14470672 | Msa0350000:three_prime_UTR |
| CTCTATGAGAATGAATATTA+TGG | 0.277262 | 3_1:-14470717 | Msa0350000:three_prime_UTR |
| CTTGTCAAAATGTTCATTAC+TGG | 0.300519 | 3_1:-14472081 | Msa0350000:CDS |
| TCAAGTGGTTCTTATTGATT+TGG | 0.300541 | 3_1:-14470840 | Msa0350000:CDS |
| GTTAATGAGAAGCGGAAAAT+TGG | 0.300762 | 3_1:-14473665 | Msa0350000:CDS |
| GCATGATATTGGCCGGTCTT+TGG | 0.301786 | 3_1:-14473950 | Msa0350000:CDS |
| ACAGTGAACGGTCATAATTT+TGG | 0.303038 | 3_1:-14470625 | Msa0350000:three_prime_UTR |
| CATGATATTGGCCGGTCTTT+GGG | 0.304133 | 3_1:-14473949 | Msa0350000:CDS |
| GCTTTCAACGCTGAAAGTTT+TGG | 0.309458 | 3_1:-14474214 | Msa0350000:CDS |
| CTCAAAATTCACTCTCTCTT+AGG | 0.310714 | 3_1:-14471228 | Msa0350000:CDS |
| ATAGATGACCTTGAATTATA+GGG | 0.320252 | 3_1:+14471809 | None:intergenic |
| GATGTTGGAGAAAATATTTA+AGG | 0.323077 | 3_1:-14470897 | Msa0350000:CDS |
| TCGATTAAGCTATTTGTTGA+TGG | 0.326299 | 3_1:+14471409 | None:intergenic |
| TAGCTTCAGAGTTTCTTTGC+AGG | 0.335261 | 3_1:-14474896 | Msa0350000:intron |
| AAGACTTCAAAGTCAATAAC+AGG | 0.335641 | 3_1:-14475042 | Msa0350000:five_prime_UTR |
| TTTCAAAGTTCAACTATGTT+TGG | 0.341135 | 3_1:-14474951 | Msa0350000:five_prime_UTR |
| GAAGAACATAGAGTGAAATA+TGG | 0.348558 | 3_1:-14470872 | Msa0350000:CDS |
| ATCAAGGGCTGCAAACTCTT+TGG | 0.353733 | 3_1:-14471260 | Msa0350000:CDS |
| TGGCTGAGGCTGGTTACTTT+AGG | 0.356935 | 3_1:-14472871 | Msa0350000:CDS |
| GTTTGGATTGACGGTTAGTT+TGG | 0.358969 | 3_1:-14470655 | Msa0350000:three_prime_UTR |
| GCTATGTAGCATTAAATATA+AGG | 0.359678 | 3_1:+14475180 | None:intergenic |
| ATGACTTTCATCAAGATATT+CGG | 0.361296 | 3_1:+14471609 | None:intergenic |
| TTGATTCGATCAGGAATTAC+AGG | 0.367426 | 3_1:-14471985 | Msa0350000:CDS |
| TGTCCTCAATTTGCTTAATA+GGG | 0.368485 | 3_1:+14473977 | None:intergenic |
| GAGGACATGACGCATGATAT+TGG | 0.369234 | 3_1:-14473961 | Msa0350000:CDS |
| CAACAGGGTCATCACCATTA+AGG | 0.375156 | 3_1:+14472957 | None:intergenic |
| AGTTCAACTATGTTTGGTCT+TGG | 0.383090 | 3_1:-14474945 | Msa0350000:five_prime_UTR |
| CAAGTATATTATTATAAATA+TGG | 0.393637 | 3_1:+14470396 | None:intergenic |
| GCTGCATCATGTGAAGCAAC+AGG | 0.395579 | 3_1:+14472941 | None:intergenic |
| ATGTTGGTCGCCATCCTTAA+TGG | 0.395954 | 3_1:-14472971 | Msa0350000:CDS |
| TCACTCAATTCATTCAAGAT+TGG | 0.396017 | 3_1:+14474105 | None:intergenic |
| GAAAATCAATAGACACTTCA+AGG | 0.397793 | 3_1:+14473908 | None:intergenic |
| CAAGAAACTACAACTTGTTT+CGG | 0.404230 | 3_1:-14471344 | Msa0350000:CDS |
| TAGAAAGTGCTGTTGCCATT+AGG | 0.405420 | 3_1:+14472163 | None:intergenic |
| GTTGTAAATGTAATGACATA+TGG | 0.409306 | 3_1:+14475202 | None:intergenic |
| CTTTCAAGCCCTATAATTCA+AGG | 0.411340 | 3_1:-14471817 | Msa0350000:CDS |
| TAATCAAAATGCACTTCATA+TGG | 0.415025 | 3_1:-14472891 | Msa0350000:CDS |
| TATGTAATAATTTATTAGAA+AGG | 0.417184 | 3_1:-14470446 | Msa0350000:three_prime_UTR |
| GTTCAACGTTTGATTCGATC+AGG | 0.422266 | 3_1:-14471994 | Msa0350000:CDS |
| CCGATCCGCCTTCGAACTGC+TGG | 0.426866 | 3_1:+14473016 | None:intergenic |
| CAAGCGTCTAGTTTCATGTA+AGG | 0.427669 | 3_1:-14473599 | Msa0350000:CDS |
| TATGTGCATGTTTGGATTGA+CGG | 0.431821 | 3_1:-14470664 | Msa0350000:three_prime_UTR |
| GAGTGATAACATCGTTGTAT+TGG | 0.435330 | 3_1:-14474088 | Msa0350000:CDS |
| AATAGCATGTCTTCTCATCT+TGG | 0.449387 | 3_1:-14471775 | Msa0350000:CDS |
| AATTATTACATACACTAGAA+TGG | 0.449720 | 3_1:+14470457 | None:intergenic |
| ATAAAGACAACATGGAAAAG+AGG | 0.455414 | 3_1:-14474251 | Msa0350000:CDS |
| AGGAAAATAACATCAAAATC+AGG | 0.456937 | 3_1:-14471687 | Msa0350000:CDS |
| TAATAATTTATTAGAAAGGA+AGG | 0.458514 | 3_1:-14470442 | Msa0350000:three_prime_UTR |
| CAAGAAGAGTATAGAAAGAA+AGG | 0.460390 | 3_1:+14475121 | None:intergenic |
| TAACATCAAAATCAGGTGTA+AGG | 0.461132 | 3_1:-14471680 | Msa0350000:CDS |
| AAGTAACCGATATACTCAAA+AGG | 0.462832 | 3_1:-14471489 | Msa0350000:CDS |
| TCACAATACGCATTCGTTGA+AGG | 0.463387 | 3_1:+14471172 | None:intergenic |
| AACATCTTCGTTGACGAGAA+TGG | 0.469925 | 3_1:+14471867 | None:intergenic |
| AACTTGTTTCGGTACAACTC+GGG | 0.472664 | 3_1:-14471333 | Msa0350000:CDS |
| AAGCACAAGGGTGAAACATA+AGG | 0.476052 | 3_1:+14475066 | None:intergenic |
| CAACTTGTTTCGGTACAACT+CGG | 0.478145 | 3_1:-14471334 | Msa0350000:CDS |
| TCAAGGGTGTATTGTTATGT+TGG | 0.478969 | 3_1:-14472987 | Msa0350000:CDS |
| CTCAATTCATTCAAGATTGG+TGG | 0.479413 | 3_1:+14474108 | None:intergenic |
| TGGATTGACGGTTAGTTTGG+CGG | 0.481683 | 3_1:-14470652 | Msa0350000:three_prime_UTR |
| GTTCACCAATCACAAAATCA+AGG | 0.482327 | 3_1:-14471276 | Msa0350000:CDS |
| AGGCGGATCGGAAGAATTCA+AGG | 0.486451 | 3_1:-14473004 | Msa0350000:CDS |
| CGGTACAATGCAGGAGAAGA+TGG | 0.492804 | 3_1:-14473137 | Msa0350000:intron |
| TTGTCAAAATGTTCATTACT+GGG | 0.493626 | 3_1:-14472080 | Msa0350000:CDS |
| AGTTTCACTTATGAGACTAA+AGG | 0.494296 | 3_1:-14473689 | Msa0350000:CDS |
| ATGATGAATGCAAGATTTGA+CGG | 0.497379 | 3_1:-14473856 | Msa0350000:CDS |
| ATATTCATTCTCATAGAGAA+AGG | 0.497816 | 3_1:+14470722 | None:intergenic |
| CAGTGGTGAAGTCTCTTACA+AGG | 0.501321 | 3_1:-14473093 | Msa0350000:CDS |
| TGCTAAGAAATCTGAAATTG+AGG | 0.502480 | 3_1:-14474172 | Msa0350000:CDS |
| GGCAACAGCACTTTCTAGGT+TGG | 0.505877 | 3_1:-14472157 | Msa0350000:CDS |
| TGACATGAACAAGATCCTAA+TGG | 0.507798 | 3_1:-14472178 | Msa0350000:CDS |
| ATGAGTGAAACGAGGACGGT+TGG | 0.508455 | 3_1:-14473793 | Msa0350000:CDS |
| AGTGAAAAGGCGGCTGCGGT+TGG | 0.510804 | 3_1:-14471544 | Msa0350000:CDS |
| CAACATGGAAAACTCTGAAA+AGG | 0.511884 | 3_1:+14474143 | None:intergenic |
| CATCTGTGCTCATGACACTA+AGG | 0.512161 | 3_1:-14471933 | Msa0350000:CDS |
| ACAAAATAGATATCAAAAGC+TGG | 0.514590 | 3_1:+14471455 | None:intergenic |
| GCCACTAGTTCAGTATTTGA+AGG | 0.526366 | 3_1:-14472849 | Msa0350000:CDS |
| AAACTTACCCTCGGAGAAGA+TGG | 0.526413 | 3_1:-14472117 | Msa0350000:CDS |
| CAAGCAAAACTCCCAAAGAC+CGG | 0.529784 | 3_1:+14473938 | None:intergenic |
| GCACTTCATATGGCTGAGGC+TGG | 0.530551 | 3_1:-14472881 | Msa0350000:CDS |
| AGTAACCGATATACTCAAAA+GGG | 0.530566 | 3_1:-14471488 | Msa0350000:CDS |
| AGAAGAGAGGAGGGAAGCAG+TGG | 0.533234 | 3_1:-14473065 | Msa0350000:CDS |
| TAAAGACAACATGGAAAAGA+GGG | 0.541292 | 3_1:-14474250 | Msa0350000:CDS |
| AGAGAGTGAAAAGGCGGCTG+CGG | 0.546328 | 3_1:-14471548 | Msa0350000:CDS |
| CTAGTTCAGTATTTGAAGGA+AGG | 0.546371 | 3_1:-14472845 | Msa0350000:intron |
| AATATTGGAAGATAAAGAGA+AGG | 0.547474 | 3_1:-14471074 | Msa0350000:CDS |
| AGCTTAATCGAGAATGCTAC+CGG | 0.548988 | 3_1:-14471397 | Msa0350000:CDS |
| CTTTGAAGTCTTGAAGCACA+AGG | 0.554168 | 3_1:+14475053 | None:intergenic |
| TGCGCTTAGAGATGATAACT+TGG | 0.555711 | 3_1:+14472047 | None:intergenic |
| CGTGCAAGAATAGCTGATGC+AGG | 0.560177 | 3_1:+14471907 | None:intergenic |
| AACTAGACGCTTGAAAAGAA+AGG | 0.562900 | 3_1:+14473609 | None:intergenic |
| AAGATATTCGGTCAACTCAT+CGG | 0.566212 | 3_1:+14471621 | None:intergenic |
| AGTGGTGAAGTCTCTTACAA+GGG | 0.569174 | 3_1:-14473092 | Msa0350000:CDS |
| ATATGGAGAATCTGCTCAAG+TGG | 0.571666 | 3_1:-14470855 | Msa0350000:CDS |
| CTAACGTTCCAGCAGTTCGA+AGG | 0.573214 | 3_1:-14473024 | Msa0350000:CDS |
| TCTAGAAGTTGGTGATGCAA+AGG | 0.574108 | 3_1:-14470939 | Msa0350000:CDS |
| AAGGGATTCAGAAGAGAGGA+GGG | 0.574393 | 3_1:-14473074 | Msa0350000:CDS |
| ATCCACATCAGAGAGTGAAA+AGG | 0.578700 | 3_1:-14471557 | Msa0350000:CDS |
| TGGTAATTTCTCAACCAACA+TGG | 0.579200 | 3_1:+14474128 | None:intergenic |
| ACATGACGCATGATATTGGC+CGG | 0.581780 | 3_1:-14473957 | Msa0350000:CDS |
| TCTTGCACGAATTGCTCAGT+CGG | 0.585121 | 3_1:-14471893 | Msa0350000:CDS |
| TCCTTCAAATACTGAACTAG+TGG | 0.585593 | 3_1:+14472848 | None:intergenic |
| AAATGCACTTCATATGGCTG+AGG | 0.585763 | 3_1:-14472885 | Msa0350000:CDS |
| CCAGCAGTTCGAAGGCGGAT+CGG | 0.587143 | 3_1:-14473016 | Msa0350000:CDS |
| ATCTGTGCTCATGACACTAA+GGG | 0.589179 | 3_1:-14471932 | Msa0350000:CDS |
| ACACCCTATTAAGCAAATTG+AGG | 0.590072 | 3_1:-14473980 | Msa0350000:CDS |
| GAGTATAGAAAGAAAGGACA+AGG | 0.592207 | 3_1:+14475127 | None:intergenic |
| ACGTTCCAGCAGTTCGAAGG+CGG | 0.594463 | 3_1:-14473021 | Msa0350000:CDS |
| GAAGAGAGGAGGGAAGCAGT+GGG | 0.594508 | 3_1:-14473064 | Msa0350000:CDS |
| CGTGAAGCGGTTTATAACAC+CGG | 0.597145 | 3_1:+14471378 | None:intergenic |
| CTAAAGGAGTTAATGAGAAG+CGG | 0.597717 | 3_1:-14473673 | Msa0350000:CDS |
| AACAGGATTCAAGAAGAAAG+TGG | 0.597758 | 3_1:-14475025 | Msa0350000:five_prime_UTR |
| CAAGGGATTCAGAAGAGAGG+AGG | 0.598706 | 3_1:-14473075 | Msa0350000:CDS |
| TGTCAGATGAATTCGTGAAG+CGG | 0.600084 | 3_1:+14471365 | None:intergenic |
| AATGCAGGAGAAGATGGTTG+AGG | 0.605540 | 3_1:-14473131 | Msa0350000:intron |
| ACTTGTTTCGGTACAACTCG+GGG | 0.608648 | 3_1:-14471332 | Msa0350000:CDS |
| AAAACAAGATAAATTACAAG+AGG | 0.608659 | 3_1:+14470497 | None:intergenic |
| TTTGGCGGAATCACAGTGAA+CGG | 0.611017 | 3_1:-14470637 | Msa0350000:three_prime_UTR |
| TTCACCAATCACAAAATCAA+GGG | 0.611717 | 3_1:-14471275 | Msa0350000:CDS |
| TTTCATGAGTGAAACGAGGA+CGG | 0.612135 | 3_1:-14473797 | Msa0350000:CDS |
| GCGTATTGTGAAGTTCATGA+TGG | 0.612567 | 3_1:-14471160 | Msa0350000:CDS |
| ACATGAGTTTGATGAAATCA+CGG | 0.621898 | 3_1:+14470561 | None:intergenic |
| CAATCGCTCCATCTTCTCCG+AGG | 0.622338 | 3_1:+14472109 | None:intergenic |
| GAACTGCTGGAACGTTAGAG+AGG | 0.622766 | 3_1:+14473029 | None:intergenic |
| AGGGTCATCACCATTAAGGA+TGG | 0.623420 | 3_1:+14472961 | None:intergenic |
| GATCACAGCAAACTTACCCT+CGG | 0.632173 | 3_1:-14472126 | Msa0350000:CDS |
| AATCGCTCCATCTTCTCCGA+GGG | 0.633086 | 3_1:+14472110 | None:intergenic |
| GACGGTTGGAGAAATAGAAG+AGG | 0.634976 | 3_1:-14473779 | Msa0350000:CDS |
| CTGCATCATGTGAAGCAACA+GGG | 0.635408 | 3_1:+14472942 | None:intergenic |
| TTTCATGAATAAAGACAACA+TGG | 0.635427 | 3_1:-14474259 | Msa0350000:exon |
| CACATCAGAGAGTGAAAAGG+CGG | 0.639535 | 3_1:-14471554 | Msa0350000:CDS |
| AAACAAGATAAATTACAAGA+GGG | 0.643366 | 3_1:+14470498 | None:intergenic |
| GGAAATGTAGAAAGTCAAAG+TGG | 0.648664 | 3_1:-14471207 | Msa0350000:CDS |
| TTTGAAGTCTTGAAGCACAA+GGG | 0.657932 | 3_1:+14475054 | None:intergenic |
| TTACAAGGGATTCAGAAGAG+AGG | 0.665641 | 3_1:-14473078 | Msa0350000:CDS |
| GGCGGATCGGAAGAATTCAA+GGG | 0.667758 | 3_1:-14473003 | Msa0350000:CDS |
| AATCTCTTGAGAATGAGCTA+CGG | 0.669448 | 3_1:-14474038 | Msa0350000:CDS |
| ATGAGAAGCGGAAAATTGGA+CGG | 0.671694 | 3_1:-14473661 | Msa0350000:CDS |
| GATTCAAGAAGAAAGTGGTG+TGG | 0.684533 | 3_1:-14475020 | Msa0350000:five_prime_UTR |
| TTGTTTAGTCAAAGCAGGTG+CGG | 0.699281 | 3_1:-14471113 | Msa0350000:CDS |
| GGACGGTGGTTTGATTAACG+AGG | 0.709297 | 3_1:-14473644 | Msa0350000:CDS |
| AGAAGCGGAAAATTGGACGG+TGG | 0.714460 | 3_1:-14473658 | Msa0350000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAGTAAAATATACTTT+TGG | + | chr3_1:14473301-14473320 | None:intergenic | 10.0% |
| !!! | AGTATATTTTACTTAATATT+TGG | - | chr3_1:14473303-14473322 | Msa0350000:intron | 10.0% |
| !! | TATGTAATAATTTATTAGAA+AGG | - | chr3_1:14475183-14475202 | Msa0350000:five_prime_UTR | 10.0% |
| !! | AACAAAAACCTTAATTAATT+GGG | + | chr3_1:14470874-14470893 | None:intergenic | 15.0% |
| !!! | TAACTTGAATAATTTTTTGT+CGG | - | chr3_1:14471148-14471167 | Msa0350000:CDS | 15.0% |
| !!! | TCTAAAATTATTGCATATTT+AGG | - | chr3_1:14472214-14472233 | Msa0350000:intron | 15.0% |
| !! | TTTATAGAAATTTGATCTTA+CGG | + | chr3_1:14472875-14472894 | None:intergenic | 15.0% |
| !! | TCTATAAAATTTCAATTAGA+TGG | - | chr3_1:14472887-14472906 | Msa0350000:CDS | 15.0% |
| !! | AAATTAATAGTATAACATGA+AGG | + | chr3_1:14473058-14473077 | None:intergenic | 15.0% |
| !! | TAATAATTTATTAGAAAGGA+AGG | - | chr3_1:14475187-14475206 | Msa0350000:five_prime_UTR | 15.0% |
| !! | CATATAAAAACAAATTCAGA+AGG | + | chr3_1:14470772-14470791 | None:intergenic | 20.0% |
| !! | TCTAATATCCCAATTAATTA+AGG | - | chr3_1:14470863-14470882 | Msa0350000:CDS | 20.0% |
| !! | GAACAAAAACCTTAATTAAT+TGG | + | chr3_1:14470875-14470894 | None:intergenic | 20.0% |
| !! | AACATTTCCAACAAAAAAAT+AGG | + | chr3_1:14472192-14472211 | None:intergenic | 20.0% |
| !!! | TATTTTTTTGTTGGAAATGT+TGG | - | chr3_1:14472191-14472210 | Msa0350000:intron | 20.0% |
| !! | TAAGCTATCTCTATAATTAA+AGG | - | chr3_1:14472304-14472323 | Msa0350000:intron | 20.0% |
| !! | AAAGTAAGATAAAATGACTA+TGG | + | chr3_1:14472466-14472485 | None:intergenic | 20.0% |
| !!! | TTTTATCTTACTTTATGAAG+CGG | - | chr3_1:14472472-14472491 | Msa0350000:intron | 20.0% |
| !! | ATAACATGAAGGAAAAAAAA+AGG | + | chr3_1:14473047-14473066 | None:intergenic | 20.0% |
| !! | CTTCATTTGTACAATTAATT+TGG | + | chr3_1:14473217-14473236 | None:intergenic | 20.0% |
| !!! | CACTTATTTTCTATAAGAAT+TGG | - | chr3_1:14473248-14473267 | Msa0350000:intron | 20.0% |
| !! | ACATTTAATTGAAGTATGAT+CGG | + | chr3_1:14473338-14473357 | None:intergenic | 20.0% |
| !! | ATCATACTTCAATTAAATGT+AGG | - | chr3_1:14473338-14473357 | Msa0350000:intron | 20.0% |
| !! | AGAAGAAAAATGAAAGAAAA+AGG | - | chr3_1:14473890-14473909 | Msa0350000:CDS | 20.0% |
| !!! | ATGTTATTTTCCTTAAGAAA+AGG | + | chr3_1:14473935-14473954 | None:intergenic | 20.0% |
| !! | ATTATAAAAAGTCTAGAAGT+TGG | - | chr3_1:14474679-14474698 | Msa0350000:intron | 20.0% |
| !! | AAACAAGATAAATTACAAGA+GGG | + | chr3_1:14475134-14475153 | None:intergenic | 20.0% |
| !! | AAAACAAGATAAATTACAAG+AGG | + | chr3_1:14475135-14475154 | None:intergenic | 20.0% |
| !! | AATTATTACATACACTAGAA+TGG | + | chr3_1:14475175-14475194 | None:intergenic | 20.0% |
| ! | GTTGTAAATGTAATGACATA+TGG | + | chr3_1:14470430-14470449 | None:intergenic | 25.0% |
| ! | GCTATGTAGCATTAAATATA+AGG | + | chr3_1:14470452-14470471 | None:intergenic | 25.0% |
| !!! | TAATAAGAGTCATTTTCAGA+CGG | + | chr3_1:14470474-14470493 | None:intergenic | 25.0% |
| ! | TTTCAAAGTTCAACTATGTT+TGG | - | chr3_1:14470678-14470697 | Msa0350000:three_prime_UTR | 25.0% |
| ! | AATTTACCTTGATTGATTGT+TGG | - | chr3_1:14470938-14470957 | Msa0350000:CDS | 25.0% |
| !!! | GTAAACAGTTTGTTAGTTTT+AGG | - | chr3_1:14471021-14471040 | Msa0350000:CDS | 25.0% |
| ! | TATATTAAACACGAATCGTT+TGG | - | chr3_1:14471105-14471124 | Msa0350000:CDS | 25.0% |
| ! | ATATTAAACACGAATCGTTT+GGG | - | chr3_1:14471106-14471125 | Msa0350000:CDS | 25.0% |
| !! | TTCAAGTTAGAATTCAAACT+CGG | + | chr3_1:14471137-14471156 | None:intergenic | 25.0% |
| !! | AGTACTTTTCTCTAGTTATA+TGG | - | chr3_1:14471278-14471297 | Msa0350000:CDS | 25.0% |
| ! | TTTCATGAATAAAGACAACA+TGG | - | chr3_1:14471370-14471389 | Msa0350000:CDS | 25.0% |
| !!! | ATTGATTTTCGAGAAAAGAT+TGG | - | chr3_1:14471734-14471753 | Msa0350000:CDS | 25.0% |
| ! | CTCATGAAAAATTCTGATTT+CGG | + | chr3_1:14471821-14471840 | None:intergenic | 25.0% |
| ! | ACTTCTTAGCAATTGAATTA+TGG | + | chr3_1:14472071-14472090 | None:intergenic | 25.0% |
| !!! | TTTTGGAAATGATGAGAAAA+AGG | - | chr3_1:14472096-14472115 | Msa0350000:CDS | 25.0% |
| !! | GTAAAAATCAACTCATTTTC+AGG | + | chr3_1:14472128-14472147 | None:intergenic | 25.0% |
| !!! | ACCTTTTCCTATTTTTTTGT+TGG | - | chr3_1:14472182-14472201 | Msa0350000:CDS | 25.0% |
| ! | TCCAACAAAAAAATAGGAAA+AGG | + | chr3_1:14472186-14472205 | None:intergenic | 25.0% |
| ! | TAAAAGCTATAAACAGCTAA+TGG | - | chr3_1:14472351-14472370 | Msa0350000:intron | 25.0% |
| !! | GACTATGGATTAACTTATTT+AGG | + | chr3_1:14472451-14472470 | None:intergenic | 25.0% |
| ! | TAATCAAAATGCACTTCATA+TGG | - | chr3_1:14472738-14472757 | Msa0350000:intron | 25.0% |
| ! | TATCTACTAGAGAGTTTAAT+AGG | - | chr3_1:14472977-14472996 | Msa0350000:CDS | 25.0% |
| ! | TTAGAAAAGTGAATATGATG+TGG | - | chr3_1:14473088-14473107 | Msa0350000:CDS | 25.0% |
| ! | CTATTATACCACAGATTTAA+AGG | + | chr3_1:14473178-14473197 | None:intergenic | 25.0% |
| ! | TATAATAGTACTAAACTGAG+AGG | - | chr3_1:14473190-14473209 | Msa0350000:intron | 25.0% |
| !! | ATAGTTTCTAGATTAAGCAA+TGG | - | chr3_1:14473362-14473381 | Msa0350000:intron | 25.0% |
| !!! | AGTAATGAACATTTTGACAA+GGG | + | chr3_1:14473549-14473568 | None:intergenic | 25.0% |
| ! | TTGTCAAAATGTTCATTACT+GGG | - | chr3_1:14473549-14473568 | Msa0350000:CDS | 25.0% |
| !! | AATCAAACGTTGAACATTTT+CGG | + | chr3_1:14473630-14473649 | None:intergenic | 25.0% |
| ! | ATAGATGACCTTGAATTATA+GGG | + | chr3_1:14473823-14473842 | None:intergenic | 25.0% |
| ! | AATAGATGACCTTGAATTAT+AGG | + | chr3_1:14473824-14473843 | None:intergenic | 25.0% |
| !!! | TTTCATTTTTCTTCTCACTT+TGG | + | chr3_1:14473885-14473904 | None:intergenic | 25.0% |
| ! | AGGAAAATAACATCAAAATC+AGG | - | chr3_1:14473942-14473961 | Msa0350000:CDS | 25.0% |
| ! | ATGACTTTCATCAAGATATT+CGG | + | chr3_1:14474023-14474042 | None:intergenic | 25.0% |
| ! | ACAAAATAGATATCAAAAGC+TGG | + | chr3_1:14474177-14474196 | None:intergenic | 25.0% |
| ! | AATATTGGAAGATAAAGAGA+AGG | - | chr3_1:14474555-14474574 | Msa0350000:intron | 25.0% |
| !! | TCTTTTGCAAGATGAAATTT+GGG | - | chr3_1:14474612-14474631 | Msa0350000:intron | 25.0% |
| ! | AATTTCATTGCGAAATTATC+AGG | - | chr3_1:14474646-14474665 | Msa0350000:intron | 25.0% |
| ! | GATGTTGGAGAAAATATTTA+AGG | - | chr3_1:14474732-14474751 | Msa0350000:intron | 25.0% |
| ! | ATATTCATTCTCATAGAGAA+AGG | + | chr3_1:14474910-14474929 | None:intergenic | 25.0% |
| ! | CTCTATGAGAATGAATATTA+TGG | - | chr3_1:14474912-14474931 | Msa0350000:five_prime_UTR | 25.0% |
| !!! | AAGCATGAAGTTCATTTTTT+TGG | - | chr3_1:14475097-14475116 | Msa0350000:five_prime_UTR | 25.0% |
| ! | AAGGTTGTAAAGAAAAAATC+AGG | - | chr3_1:14475206-14475225 | Msa0350000:five_prime_UTR | 25.0% |
| ! | CAAGAAGAGTATAGAAAGAA+AGG | + | chr3_1:14470511-14470530 | None:intergenic | 30.0% |
| AAGACTTCAAAGTCAATAAC+AGG | - | chr3_1:14470587-14470606 | Msa0350000:three_prime_UTR | 30.0% | |
| !!! | TATTTTTTGTCTTAACCCTC+TGG | + | chr3_1:14471229-14471248 | None:intergenic | 30.0% |
| ! | ACTTTTCTCTAGTTATATGG+TGG | - | chr3_1:14471281-14471300 | Msa0350000:CDS | 30.0% |
| ATAAAGACAACATGGAAAAG+AGG | - | chr3_1:14471378-14471397 | Msa0350000:CDS | 30.0% | |
| TAAAGACAACATGGAAAAGA+GGG | - | chr3_1:14471379-14471398 | Msa0350000:CDS | 30.0% | |
| ! | TGCTAAGAAATCTGAAATTG+AGG | - | chr3_1:14471457-14471476 | Msa0350000:CDS | 30.0% |
| TCACTCAATTCATTCAAGAT+TGG | + | chr3_1:14471527-14471546 | None:intergenic | 30.0% | |
| ! | TCCAACGATTTTTGAATTGA+TGG | + | chr3_1:14471572-14471591 | None:intergenic | 30.0% |
| ! | TGTCCTCAATTTGCTTAATA+GGG | + | chr3_1:14471655-14471674 | None:intergenic | 30.0% |
| ! | ATGTCCTCAATTTGCTTAAT+AGG | + | chr3_1:14471656-14471675 | None:intergenic | 30.0% |
| GAAAATCAATAGACACTTCA+AGG | + | chr3_1:14471724-14471743 | None:intergenic | 30.0% | |
| ATGATGAATGCAAGATTTGA+CGG | - | chr3_1:14471773-14471792 | Msa0350000:CDS | 30.0% | |
| ! | AATTTTTCATGAGTGAAACG+AGG | - | chr3_1:14471828-14471847 | Msa0350000:CDS | 30.0% |
| ! | GTGATTTTGCAACTTAAGAA+TGG | - | chr3_1:14471899-14471918 | Msa0350000:CDS | 30.0% |
| AGTTTCACTTATGAGACTAA+AGG | - | chr3_1:14471940-14471959 | Msa0350000:CDS | 30.0% | |
| !!! | TTGCTAAGAAGTATTGCTTT+TGG | - | chr3_1:14472079-14472098 | Msa0350000:CDS | 30.0% |
| ACTTATTTAGGCTTATCTAC+TGG | + | chr3_1:14472439-14472458 | None:intergenic | 30.0% | |
| TAAAAGACAAGTATCTGTTG+AGG | + | chr3_1:14472824-14472843 | None:intergenic | 30.0% | |
| ! | AGTTTTACACTGACATCTAA+TGG | - | chr3_1:14473017-14473036 | Msa0350000:CDS | 30.0% |
| TTATGCATGCTACTGTAAAT+CGG | + | chr3_1:14473155-14473174 | None:intergenic | 30.0% | |
| ATGCATAACCTTTAAATCTG+TGG | - | chr3_1:14473167-14473186 | Msa0350000:intron | 30.0% | |
| TGAGAATGAGTGTTACATAT+AGG | - | chr3_1:14473273-14473292 | Msa0350000:intron | 30.0% | |
| GAGAATGAGTGTTACATATA+GGG | - | chr3_1:14473274-14473293 | Msa0350000:intron | 30.0% | |
| TCAAATTATCTTGTTACTGC+AGG | - | chr3_1:14473425-14473444 | Msa0350000:intron | 30.0% | |
| CAAATTATCTTGTTACTGCA+GGG | - | chr3_1:14473426-14473445 | Msa0350000:intron | 30.0% | |
| !! | GTAATGAACATTTTGACAAG+GGG | + | chr3_1:14473548-14473567 | None:intergenic | 30.0% |
| !! | CAGTAATGAACATTTTGACA+AGG | + | chr3_1:14473550-14473569 | None:intergenic | 30.0% |
| CTTGTCAAAATGTTCATTAC+TGG | - | chr3_1:14473548-14473567 | Msa0350000:CDS | 30.0% | |
| ! | ACTACTCTTACCTTTTCTTA+AGG | - | chr3_1:14473922-14473941 | Msa0350000:CDS | 30.0% |
| TAACATCAAAATCAGGTGTA+AGG | - | chr3_1:14473949-14473968 | Msa0350000:CDS | 30.0% | |
| AAGTAACCGATATACTCAAA+AGG | - | chr3_1:14474140-14474159 | Msa0350000:CDS | 30.0% | |
| AGTAACCGATATACTCAAAA+GGG | - | chr3_1:14474141-14474160 | Msa0350000:CDS | 30.0% | |
| !! | ATTAGCCCTTTTGAGTATAT+CGG | + | chr3_1:14474149-14474168 | None:intergenic | 30.0% |
| ! | TCGATTAAGCTATTTGTTGA+TGG | + | chr3_1:14474223-14474242 | None:intergenic | 30.0% |
| ! | CAAGAAACTACAACTTGTTT+CGG | - | chr3_1:14474285-14474304 | Msa0350000:intron | 30.0% |
| TTCACCAATCACAAAATCAA+GGG | - | chr3_1:14474354-14474373 | Msa0350000:intron | 30.0% | |
| !! | ACATTTTGTTTAGTCAAAGC+AGG | - | chr3_1:14474511-14474530 | Msa0350000:intron | 30.0% |
| TTCACGACTTATCGAAATAT+TGG | - | chr3_1:14474540-14474559 | Msa0350000:intron | 30.0% | |
| ! | CTCTTTTGCAAGATGAAATT+TGG | - | chr3_1:14474611-14474630 | Msa0350000:intron | 30.0% |
| CAAGATGAAATTTGGGAAAA+TGG | - | chr3_1:14474619-14474638 | Msa0350000:intron | 30.0% | |
| !! | AGGTTCAAGAAAAAGCATTA+TGG | - | chr3_1:14474710-14474729 | Msa0350000:intron | 30.0% |
| !! | AGAAAAAGCATTATGGATGT+TGG | - | chr3_1:14474717-14474736 | Msa0350000:intron | 30.0% |
| GAAGAACATAGAGTGAAATA+TGG | - | chr3_1:14474757-14474776 | Msa0350000:intron | 30.0% | |
| ! | TCAAGTGGTTCTTATTGATT+TGG | - | chr3_1:14474789-14474808 | Msa0350000:intron | 30.0% |
| CATTCATTTATGTGCATGTT+TGG | - | chr3_1:14474957-14474976 | Msa0350000:five_prime_UTR | 30.0% | |
| ACATGAGTTTGATGAAATCA+CGG | + | chr3_1:14475071-14475090 | None:intergenic | 30.0% | |
| !!! | AGAATGGTTTTATGTGTTTC+AGG | + | chr3_1:14475159-14475178 | None:intergenic | 30.0% |
| GAGTATAGAAAGAAAGGACA+AGG | + | chr3_1:14470505-14470524 | None:intergenic | 35.0% | |
| ! | TTTGAAGTCTTGAAGCACAA+GGG | + | chr3_1:14470578-14470597 | None:intergenic | 35.0% |
| AACAGGATTCAAGAAGAAAG+TGG | - | chr3_1:14470604-14470623 | Msa0350000:three_prime_UTR | 35.0% | |
| AGTTCAACTATGTTTGGTCT+TGG | - | chr3_1:14470684-14470703 | Msa0350000:three_prime_UTR | 35.0% | |
| TACCTTGATTGATTGTTGGT+TGG | - | chr3_1:14470942-14470961 | Msa0350000:CDS | 35.0% | |
| AACCAACCAACAATCAATCA+AGG | + | chr3_1:14470947-14470966 | None:intergenic | 35.0% | |
| ! | CATGGAAAAGAGGGAATTTT+CGG | - | chr3_1:14471388-14471407 | Msa0350000:CDS | 35.0% |
| ! | CAACATGGAAAACTCTGAAA+AGG | + | chr3_1:14471489-14471508 | None:intergenic | 35.0% |
| ! | CTTTTCAGAGTTTTCCATGT+TGG | - | chr3_1:14471487-14471506 | Msa0350000:CDS | 35.0% |
| TGGTAATTTCTCAACCAACA+TGG | + | chr3_1:14471504-14471523 | None:intergenic | 35.0% | |
| CTCAATTCATTCAAGATTGG+TGG | + | chr3_1:14471524-14471543 | None:intergenic | 35.0% | |
| GAGTGATAACATCGTTGTAT+TGG | - | chr3_1:14471541-14471560 | Msa0350000:CDS | 35.0% | |
| GCCATCAATTCAAAAATCGT+TGG | - | chr3_1:14471568-14471587 | Msa0350000:CDS | 35.0% | |
| AATCTCTTGAGAATGAGCTA+CGG | - | chr3_1:14471591-14471610 | Msa0350000:CDS | 35.0% | |
| ACACCCTATTAAGCAAATTG+AGG | - | chr3_1:14471649-14471668 | Msa0350000:CDS | 35.0% | |
| CTAAAGGAGTTAATGAGAAG+CGG | - | chr3_1:14471956-14471975 | Msa0350000:CDS | 35.0% | |
| GTTAATGAGAAGCGGAAAAT+TGG | - | chr3_1:14471964-14471983 | Msa0350000:CDS | 35.0% | |
| AACTAGACGCTTGAAAAGAA+AGG | + | chr3_1:14472023-14472042 | None:intergenic | 35.0% | |
| ATTGCATATTTAGGCCTGTT+TGG | - | chr3_1:14472223-14472242 | Msa0350000:intron | 35.0% | |
| TTGCATATTTAGGCCTGTTT+GGG | - | chr3_1:14472224-14472243 | Msa0350000:intron | 35.0% | |
| TTGTGAGTTGTAACAATGTC+TGG | + | chr3_1:14472407-14472426 | None:intergenic | 35.0% | |
| ! | GGTTGAATTTTTATCAGCAG+TGG | - | chr3_1:14472519-14472538 | Msa0350000:intron | 35.0% |
| ! | TCAAGGGTGTATTGTTATGT+TGG | - | chr3_1:14472642-14472661 | Msa0350000:intron | 35.0% |
| ACATGATGCAGCAAAGTTAT+TGG | - | chr3_1:14472699-14472718 | Msa0350000:intron | 35.0% | |
| TCCTTCAAATACTGAACTAG+TGG | + | chr3_1:14472784-14472803 | None:intergenic | 35.0% | |
| CTAGTTCAGTATTTGAAGGA+AGG | - | chr3_1:14472784-14472803 | Msa0350000:intron | 35.0% | |
| TATTTGAAGGAAGGTAATGC+AGG | - | chr3_1:14472793-14472812 | Msa0350000:intron | 35.0% | |
| GAAGCAGAAAAGTTAGCATT+TGG | - | chr3_1:14472941-14472960 | Msa0350000:CDS | 35.0% | |
| TGACATGAACAAGATCCTAA+TGG | - | chr3_1:14473451-14473470 | Msa0350000:intron | 35.0% | |
| ! | TTGATTCGATCAGGAATTAC+AGG | - | chr3_1:14473644-14473663 | Msa0350000:CDS | 35.0% |
| CTTTCAAGCCCTATAATTCA+AGG | - | chr3_1:14473812-14473831 | Msa0350000:CDS | 35.0% | |
| AATAGCATGTCTTCTCATCT+TGG | - | chr3_1:14473854-14473873 | Msa0350000:CDS | 35.0% | |
| AAGATATTCGGTCAACTCAT+CGG | + | chr3_1:14474011-14474030 | None:intergenic | 35.0% | |
| !!! | GTTACTTTTTTATCGCTAGC+AGG | + | chr3_1:14474127-14474146 | None:intergenic | 35.0% |
| GTTCACCAATCACAAAATCA+AGG | - | chr3_1:14474353-14474372 | Msa0350000:intron | 35.0% | |
| CTCAAAATTCACTCTCTCTT+AGG | - | chr3_1:14474401-14474420 | Msa0350000:intron | 35.0% | |
| GGAAATGTAGAAAGTCAAAG+TGG | - | chr3_1:14474422-14474441 | Msa0350000:intron | 35.0% | |
| TATGTGCATGTTTGGATTGA+CGG | - | chr3_1:14474965-14474984 | Msa0350000:intron | 35.0% | |
| ! | ACAGTGAACGGTCATAATTT+TGG | - | chr3_1:14475004-14475023 | Msa0350000:intron | 35.0% |
| AAGCACAAGGGTGAAACATA+AGG | + | chr3_1:14470566-14470585 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTCTTGAAGCACA+AGG | + | chr3_1:14470579-14470598 | None:intergenic | 40.0% |
| GATTCAAGAAGAAAGTGGTG+TGG | - | chr3_1:14470609-14470628 | Msa0350000:three_prime_UTR | 40.0% | |
| TAGCTTCAGAGTTTCTTTGC+AGG | - | chr3_1:14470733-14470752 | Msa0350000:exon | 40.0% | |
| ! | GCTTTCAACGCTGAAAGTTT+TGG | - | chr3_1:14471415-14471434 | Msa0350000:CDS | 40.0% |
| TTTCATGAGTGAAACGAGGA+CGG | - | chr3_1:14471832-14471851 | Msa0350000:CDS | 40.0% | |
| ATGAGAAGCGGAAAATTGGA+CGG | - | chr3_1:14471968-14471987 | Msa0350000:CDS | 40.0% | |
| ! | CAAGCGTCTAGTTTCATGTA+AGG | - | chr3_1:14472030-14472049 | Msa0350000:CDS | 40.0% |
| ! | ATTAAGTTGCTGACCCAAAC+AGG | + | chr3_1:14472240-14472259 | None:intergenic | 40.0% |
| TTTATGAAGCGGTACAATGC+AGG | - | chr3_1:14472483-14472502 | Msa0350000:intron | 40.0% | |
| AGTGGTGAAGTCTCTTACAA+GGG | - | chr3_1:14472537-14472556 | Msa0350000:intron | 40.0% | |
| TTACAAGGGATTCAGAAGAG+AGG | - | chr3_1:14472551-14472570 | Msa0350000:intron | 40.0% | |
| AAATGCACTTCATATGGCTG+AGG | - | chr3_1:14472744-14472763 | Msa0350000:intron | 40.0% | |
| GCCACTAGTTCAGTATTTGA+AGG | - | chr3_1:14472780-14472799 | Msa0350000:intron | 40.0% | |
| !! | TAGAAAGTGCTGTTGCCATT+AGG | + | chr3_1:14473469-14473488 | None:intergenic | 40.0% |
| TAATGGCAACAGCACTTTCT+AGG | - | chr3_1:14473468-14473487 | Msa0350000:intron | 40.0% | |
| TGCGCTTAGAGATGATAACT+TGG | + | chr3_1:14473585-14473604 | None:intergenic | 40.0% | |
| ! | GTTCAACGTTTGATTCGATC+AGG | - | chr3_1:14473635-14473654 | Msa0350000:CDS | 40.0% |
| ATCTGTGCTCATGACACTAA+GGG | - | chr3_1:14473697-14473716 | Msa0350000:CDS | 40.0% | |
| AACATCTTCGTTGACGAGAA+TGG | + | chr3_1:14473765-14473784 | None:intergenic | 40.0% | |
| ATCCACATCAGAGAGTGAAA+AGG | - | chr3_1:14474072-14474091 | Msa0350000:CDS | 40.0% | |
| AGCTTAATCGAGAATGCTAC+CGG | - | chr3_1:14474232-14474251 | Msa0350000:CDS | 40.0% | |
| TGTCAGATGAATTCGTGAAG+CGG | + | chr3_1:14474267-14474286 | None:intergenic | 40.0% | |
| ! | CAACTTGTTTCGGTACAACT+CGG | - | chr3_1:14474295-14474314 | Msa0350000:intron | 40.0% |
| ! | AACTTGTTTCGGTACAACTC+GGG | - | chr3_1:14474296-14474315 | Msa0350000:intron | 40.0% |
| ! | GAGAGCAATTTTACGAGCAA+AGG | + | chr3_1:14474328-14474347 | None:intergenic | 40.0% |
| TCACAATACGCATTCGTTGA+AGG | + | chr3_1:14474460-14474479 | None:intergenic | 40.0% | |
| GCGTATTGTGAAGTTCATGA+TGG | - | chr3_1:14474469-14474488 | Msa0350000:intron | 40.0% | |
| TTGTTTAGTCAAAGCAGGTG+CGG | - | chr3_1:14474516-14474535 | Msa0350000:intron | 40.0% | |
| !! | TCTAGAAGTTGGTGATGCAA+AGG | - | chr3_1:14474690-14474709 | Msa0350000:intron | 40.0% |
| ATATGGAGAATCTGCTCAAG+TGG | - | chr3_1:14474774-14474793 | Msa0350000:intron | 40.0% | |
| ! | GTTTGGATTGACGGTTAGTT+TGG | - | chr3_1:14474974-14474993 | Msa0350000:intron | 40.0% |
| GTCGGACTTTACTTGCCTTA+TGG | - | chr3_1:14471166-14471185 | Msa0350000:CDS | 45.0% | |
| TATGTCGGAGAACGACCATA+AGG | + | chr3_1:14471184-14471203 | None:intergenic | 45.0% | |
| ! | TCCTTTCTCTAGGAACCAGA+GGG | - | chr3_1:14471211-14471230 | Msa0350000:CDS | 45.0% |
| GAGGACATGACGCATGATAT+TGG | - | chr3_1:14471668-14471687 | Msa0350000:CDS | 45.0% | |
| ACATGACGCATGATATTGGC+CGG | - | chr3_1:14471672-14471691 | Msa0350000:CDS | 45.0% | |
| CATGATATTGGCCGGTCTTT+GGG | - | chr3_1:14471680-14471699 | Msa0350000:CDS | 45.0% | |
| CAAGCAAAACTCCCAAAGAC+CGG | + | chr3_1:14471694-14471713 | None:intergenic | 45.0% | |
| GACGGTTGGAGAAATAGAAG+AGG | - | chr3_1:14471850-14471869 | Msa0350000:CDS | 45.0% | |
| AATGCAGGAGAAGATGGTTG+AGG | - | chr3_1:14472498-14472517 | Msa0350000:intron | 45.0% | |
| CAGTGGTGAAGTCTCTTACA+AGG | - | chr3_1:14472536-14472555 | Msa0350000:intron | 45.0% | |
| AAGGGATTCAGAAGAGAGGA+GGG | - | chr3_1:14472555-14472574 | Msa0350000:intron | 45.0% | |
| ATGTTGGTCGCCATCCTTAA+TGG | - | chr3_1:14472658-14472677 | Msa0350000:intron | 45.0% | |
| AGGGTCATCACCATTAAGGA+TGG | + | chr3_1:14472671-14472690 | None:intergenic | 45.0% | |
| CAACAGGGTCATCACCATTA+AGG | + | chr3_1:14472675-14472694 | None:intergenic | 45.0% | |
| CTGCATCATGTGAAGCAACA+GGG | + | chr3_1:14472690-14472709 | None:intergenic | 45.0% | |
| GATCACAGCAAACTTACCCT+CGG | - | chr3_1:14473503-14473522 | Msa0350000:intron | 45.0% | |
| AAACTTACCCTCGGAGAAGA+TGG | - | chr3_1:14473512-14473531 | Msa0350000:intron | 45.0% | |
| CATCTGTGCTCATGACACTA+AGG | - | chr3_1:14473696-14473715 | Msa0350000:CDS | 45.0% | |
| TCTTGCACGAATTGCTCAGT+CGG | - | chr3_1:14473736-14473755 | Msa0350000:CDS | 45.0% | |
| CACATCAGAGAGTGAAAAGG+CGG | - | chr3_1:14474075-14474094 | Msa0350000:CDS | 45.0% | |
| CGTGAAGCGGTTTATAACAC+CGG | + | chr3_1:14474254-14474273 | None:intergenic | 45.0% | |
| ACTTGTTTCGGTACAACTCG+GGG | - | chr3_1:14474297-14474316 | Msa0350000:intron | 45.0% | |
| ! | GCAGCCCTTGATTTTGTGAT+TGG | + | chr3_1:14474361-14474380 | None:intergenic | 45.0% |
| ATCAAGGGCTGCAAACTCTT+TGG | - | chr3_1:14474369-14474388 | Msa0350000:intron | 45.0% | |
| !! | TGGATTGACGGTTAGTTTGG+CGG | - | chr3_1:14474977-14474996 | Msa0350000:intron | 45.0% |
| TTTGGCGGAATCACAGTGAA+CGG | - | chr3_1:14474992-14475011 | Msa0350000:intron | 45.0% | |
| AGAAAGGACGCCTCGTATGT+CGG | + | chr3_1:14471199-14471218 | None:intergenic | 50.0% | |
| ! | ATACGAGGCGTCCTTTCTCT+AGG | - | chr3_1:14471201-14471220 | Msa0350000:CDS | 50.0% |
| ! | GTCCTTTCTCTAGGAACCAG+AGG | - | chr3_1:14471210-14471229 | Msa0350000:CDS | 50.0% |
| ! | ACCCTCTGGTTCCTAGAGAA+AGG | + | chr3_1:14471215-14471234 | None:intergenic | 50.0% |
| GCATGATATTGGCCGGTCTT+TGG | - | chr3_1:14471679-14471698 | Msa0350000:CDS | 50.0% | |
| ATGAGTGAAACGAGGACGGT+TGG | - | chr3_1:14471836-14471855 | Msa0350000:CDS | 50.0% | |
| AGAAGCGGAAAATTGGACGG+TGG | - | chr3_1:14471971-14471990 | Msa0350000:CDS | 50.0% | |
| GGACGGTGGTTTGATTAACG+AGG | - | chr3_1:14471985-14472004 | Msa0350000:CDS | 50.0% | |
| CGGTACAATGCAGGAGAAGA+TGG | - | chr3_1:14472492-14472511 | Msa0350000:intron | 50.0% | |
| CAAGGGATTCAGAAGAGAGG+AGG | - | chr3_1:14472554-14472573 | Msa0350000:intron | 50.0% | |
| GAACTGCTGGAACGTTAGAG+AGG | + | chr3_1:14472603-14472622 | None:intergenic | 50.0% | |
| CTAACGTTCCAGCAGTTCGA+AGG | - | chr3_1:14472605-14472624 | Msa0350000:intron | 50.0% | |
| AGGCGGATCGGAAGAATTCA+AGG | - | chr3_1:14472625-14472644 | Msa0350000:intron | 50.0% | |
| GGCGGATCGGAAGAATTCAA+GGG | - | chr3_1:14472626-14472645 | Msa0350000:intron | 50.0% | |
| GCTGCATCATGTGAAGCAAC+AGG | + | chr3_1:14472691-14472710 | None:intergenic | 50.0% | |
| ! | TGGCTGAGGCTGGTTACTTT+AGG | - | chr3_1:14472758-14472777 | Msa0350000:intron | 50.0% |
| GGCAACAGCACTTTCTAGGT+TGG | - | chr3_1:14473472-14473491 | Msa0350000:intron | 50.0% | |
| AATCGCTCCATCTTCTCCGA+GGG | + | chr3_1:14473522-14473541 | None:intergenic | 50.0% | |
| CGTGCAAGAATAGCTGATGC+AGG | + | chr3_1:14473725-14473744 | None:intergenic | 50.0% | |
| ! | CGCCTTTTCACTCTCTGATG+TGG | + | chr3_1:14474077-14474096 | None:intergenic | 50.0% |
| TGGTCGTTCTCCGACATACG+AGG | - | chr3_1:14471186-14471205 | Msa0350000:CDS | 55.0% | |
| AGAAGAGAGGAGGGAAGCAG+TGG | - | chr3_1:14472564-14472583 | Msa0350000:intron | 55.0% | |
| GAAGAGAGGAGGGAAGCAGT+GGG | - | chr3_1:14472565-14472584 | Msa0350000:intron | 55.0% | |
| ACGTTCCAGCAGTTCGAAGG+CGG | - | chr3_1:14472608-14472627 | Msa0350000:intron | 55.0% | |
| GCACTTCATATGGCTGAGGC+TGG | - | chr3_1:14472748-14472767 | Msa0350000:intron | 55.0% | |
| CAATCGCTCCATCTTCTCCG+AGG | + | chr3_1:14473523-14473542 | None:intergenic | 55.0% | |
| AGAGAGTGAAAAGGCGGCTG+CGG | - | chr3_1:14474081-14474100 | Msa0350000:CDS | 55.0% | |
| CCAGCAGTTCGAAGGCGGAT+CGG | - | chr3_1:14472613-14472632 | Msa0350000:intron | 60.0% | |
| AGTGAAAAGGCGGCTGCGGT+TGG | - | chr3_1:14474085-14474104 | Msa0350000:CDS | 60.0% | |
| CCGATCCGCCTTCGAACTGC+TGG | + | chr3_1:14472616-14472635 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 14470408 | 14475243 | 14470408 | ID=Msa0350000;Name=Msa0350000 |
| chr3_1 | mRNA | 14470408 | 14475243 | 14470408 | ID=Msa0350000-mRNA-1;Parent=Msa0350000;Name=Msa0350000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=322|1|1|1|0.5|0.4|5|343|832 |
| chr3_1 | exon | 14470408 | 14472204 | 14470408 | ID=Msa0350000-mRNA-1:exon:3585;Parent=Msa0350000-mRNA-1 |
| chr3_1 | exon | 14472846 | 14473146 | 14472846 | ID=Msa0350000-mRNA-1:exon:3584;Parent=Msa0350000-mRNA-1 |
| chr3_1 | exon | 14473534 | 14474282 | 14473534 | ID=Msa0350000-mRNA-1:exon:3583;Parent=Msa0350000-mRNA-1 |
| chr3_1 | exon | 14474897 | 14474982 | 14474897 | ID=Msa0350000-mRNA-1:exon:3582;Parent=Msa0350000-mRNA-1 |
| chr3_1 | exon | 14475013 | 14475243 | 14475013 | ID=Msa0350000-mRNA-1:exon:3581;Parent=Msa0350000-mRNA-1 |
| chr3_1 | five_prime_UTR | 14475013 | 14475243 | 14475013 | ID=Msa0350000-mRNA-1:five_prime_utr;Parent=Msa0350000-mRNA-1 |
| chr3_1 | five_prime_UTR | 14474897 | 14474982 | 14474897 | ID=Msa0350000-mRNA-1:five_prime_utr;Parent=Msa0350000-mRNA-1 |
| chr3_1 | five_prime_UTR | 14474278 | 14474282 | 14474278 | ID=Msa0350000-mRNA-1:five_prime_utr;Parent=Msa0350000-mRNA-1 |
| chr3_1 | CDS | 14473534 | 14474277 | 14473534 | ID=Msa0350000-mRNA-1:cds;Parent=Msa0350000-mRNA-1 |
| chr3_1 | CDS | 14472846 | 14473146 | 14472846 | ID=Msa0350000-mRNA-1:cds;Parent=Msa0350000-mRNA-1 |
| chr3_1 | CDS | 14470751 | 14472204 | 14470751 | ID=Msa0350000-mRNA-1:cds;Parent=Msa0350000-mRNA-1 |
| chr3_1 | three_prime_UTR | 14470408 | 14470750 | 14470408 | ID=Msa0350000-mRNA-1:three_prime_utr;Parent=Msa0350000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
