Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006160 | XP_024627228.1 | 98.201 | 278 | 5 | 0 | 1 | 278 | 1 | 278 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006160 | sp|Q8LGJ5|PCO2_ARATH | 60.573 | 279 | 93 | 7 | 1 | 271 | 1 | 270 | 4.53e-112 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006160 | G7KZU7 | 98.201 | 278 | 5 | 0 | 1 | 278 | 1 | 278 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0662570 | Msa1006160 | -0.809641 | 1.711447e-50 | -8.615850e-47 |
| Msa0199800 | Msa1006160 | 0.819981 | 8.729976e-53 | -8.615850e-47 |
| Msa0365490 | Msa1006160 | -0.807232 | 5.588782e-50 | -8.615850e-47 |
| Msa0444090 | Msa1006160 | -0.823930 | 1.062620e-53 | -8.615850e-47 |
| Msa0458440 | Msa1006160 | -0.807980 | 3.876652e-50 | -8.615850e-47 |
| Msa1006160 | Msa1033780 | -0.808147 | 3.572750e-50 | -8.615850e-47 |
| Msa1006160 | Msa1041600 | 0.812224 | 4.721608e-51 | -8.615850e-47 |
| Msa1006160 | Msa1075080 | 0.800243 | 1.579484e-48 | -8.615850e-47 |
| Msa1006160 | Msa1100270 | 0.964008 | 8.675914e-123 | -8.615850e-47 |
| Msa1006160 | Msa1166500 | 0.810500 | 1.117889e-50 | -8.615850e-47 |
| Msa1006160 | Msa1228160 | 0.861219 | 1.196247e-63 | -8.615850e-47 |
| Msa1006160 | Msa1255060 | -0.805455 | 1.323673e-49 | -8.615850e-47 |
| Msa1006160 | Msa1376930 | -0.828553 | 8.434899e-55 | -8.615850e-47 |
| Msa1006160 | Msa1398890 | -0.803863 | 2.845267e-49 | -8.615850e-47 |
| Msa1006160 | Msa1451620 | 0.818019 | 2.439013e-52 | -8.615850e-47 |
| Msa1006160 | Msa1461810 | 0.818896 | 1.542647e-52 | -8.615850e-47 |
| Msa0350000 | Msa1006160 | -0.814358 | 1.604605e-51 | -8.615850e-47 |
| Msa0354800 | Msa1006160 | 0.803889 | 2.810611e-49 | -8.615850e-47 |
| Msa0532810 | Msa1006160 | 0.810569 | 1.080027e-50 | -8.615850e-47 |
| Msa0574850 | Msa1006160 | -0.822878 | 1.871877e-53 | -8.615850e-47 |
| Msa0587190 | Msa1006160 | -0.801723 | 7.872137e-49 | -8.615850e-47 |
| Msa0876850 | Msa1006160 | 0.802560 | 5.294543e-49 | -8.615850e-47 |
| Msa0965520 | Msa1006160 | -0.809549 | 1.791401e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006160 | MtrunA17_Chr7g0216881 | 98.201 | 278 | 5 | 0 | 1 | 278 | 1 | 278 | 0.0 | 575 |
| Msa1006160 | MtrunA17_Chr6g0452941 | 66.078 | 283 | 87 | 3 | 1 | 278 | 1 | 279 | 3.34e-131 | 373 |
| Msa1006160 | MtrunA17_Chr6g0460971 | 51.770 | 226 | 99 | 4 | 45 | 265 | 58 | 278 | 1.29e-74 | 229 |
| Msa1006160 | MtrunA17_Chr7g0253891 | 46.350 | 274 | 130 | 8 | 3 | 265 | 1 | 268 | 6.23e-71 | 220 |
| Msa1006160 | MtrunA17_Chr2g0307681 | 40.613 | 261 | 136 | 6 | 26 | 271 | 9 | 265 | 1.26e-60 | 193 |
| Msa1006160 | MtrunA17_Chr2g0320221 | 42.678 | 239 | 112 | 7 | 45 | 270 | 5 | 231 | 2.02e-59 | 189 |
| Msa1006160 | MtrunA17_Chr4g0041281 | 41.250 | 240 | 115 | 8 | 45 | 270 | 5 | 232 | 2.81e-57 | 183 |
| Msa1006160 | MtrunA17_Chr2g0283961 | 39.583 | 240 | 119 | 9 | 42 | 265 | 1 | 230 | 3.42e-54 | 176 |
| Msa1006160 | MtrunA17_Chr5g0426531 | 37.238 | 239 | 116 | 5 | 41 | 265 | 2 | 220 | 4.47e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006160 | AT5G39890.1 | 60.573 | 279 | 93 | 7 | 1 | 271 | 1 | 270 | 4.61e-113 | 327 |
| Msa1006160 | AT5G39890.2 | 61.633 | 245 | 78 | 6 | 1 | 238 | 1 | 236 | 1.85e-99 | 291 |
| Msa1006160 | AT5G15120.1 | 58.678 | 242 | 87 | 5 | 42 | 275 | 55 | 291 | 9.17e-98 | 289 |
| Msa1006160 | AT3G58670.2 | 43.103 | 232 | 115 | 5 | 45 | 265 | 5 | 230 | 1.37e-61 | 195 |
| Msa1006160 | AT3G58670.3 | 43.103 | 232 | 115 | 5 | 45 | 265 | 5 | 230 | 1.37e-61 | 195 |
| Msa1006160 | AT3G58670.1 | 43.103 | 232 | 115 | 5 | 45 | 265 | 5 | 230 | 1.37e-61 | 195 |
| Msa1006160 | AT2G42670.2 | 42.735 | 234 | 113 | 6 | 45 | 265 | 5 | 230 | 1.54e-59 | 189 |
| Msa1006160 | AT2G42670.1 | 41.810 | 232 | 117 | 6 | 45 | 265 | 5 | 229 | 4.28e-59 | 188 |
| Msa1006160 | AT1G18490.1 | 42.105 | 247 | 122 | 8 | 37 | 265 | 27 | 270 | 1.15e-56 | 184 |
| Msa1006160 | AT3G58670.4 | 49.091 | 165 | 80 | 2 | 102 | 265 | 26 | 187 | 7.03e-55 | 176 |
| Msa1006160 | AT2G42670.3 | 48.684 | 152 | 70 | 3 | 117 | 265 | 16 | 162 | 3.77e-45 | 150 |
Find 64 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCGTTGAGAATTGAATTT+TGG | 0.120884 | 7_1:-4836419 | None:intergenic |
| TTTCCTTGGTTTCATGTTAT+TGG | 0.147923 | 7_1:-4836634 | None:intergenic |
| GGTTTCAAGCCAAGGTCTTC+TGG | 0.290037 | 7_1:-4838644 | None:intergenic |
| CCGTTGATATTGCTGAAATA+TGG | 0.332743 | 7_1:-4838674 | None:intergenic |
| AGAGTAAAACAGAGGAAAAC+AGG | 0.338424 | 7_1:-4836347 | None:intergenic |
| TGTGTTTGTTTAGAGAAATT+TGG | 0.375739 | 7_1:+4840759 | Msa1006160:three_prime_UTR |
| TGCACATCAAATCTTATGAT+TGG | 0.383008 | 7_1:+4839227 | Msa1006160:CDS |
| ATTTGTGCCAGCCCAGATTC+CGG | 0.383303 | 7_1:+4839838 | Msa1006160:intron |
| GTACAGCAGCTCAAAGACTA+TGG | 0.383324 | 7_1:+4840705 | Msa1006160:CDS |
| ACAGAGGAAAACAGGGGAAA+TGG | 0.384491 | 7_1:-4836339 | None:intergenic |
| AGAAACATGGTTGAAAGAAA+AGG | 0.387921 | 7_1:+4836576 | Msa1006160:CDS |
| TAAATATGTACCTGGAAAGT+TGG | 0.418116 | 7_1:-4840056 | None:intergenic |
| TGCCACCATCATCAGGATAA+AGG | 0.418756 | 7_1:-4839922 | None:intergenic |
| GAAACATGGTTGAAAGAAAA+GGG | 0.426062 | 7_1:+4836577 | Msa1006160:CDS |
| TACCTGGAAAGTTGGAAAAC+GGG | 0.436431 | 7_1:-4840048 | None:intergenic |
| ATTTCAATGTGTTGAGAAGA+AGG | 0.442115 | 7_1:-4836756 | None:intergenic |
| TCGATCCTTTATCCTGATGA+TGG | 0.445483 | 7_1:+4839917 | Msa1006160:CDS |
| GTACCTGGAAAGTTGGAAAA+CGG | 0.456140 | 7_1:-4840049 | None:intergenic |
| CTTCCATCAGGATCAGAGTA+TGG | 0.461902 | 7_1:-4840001 | None:intergenic |
| TGCATGTTGCCACCATCATC+AGG | 0.462731 | 7_1:-4839929 | None:intergenic |
| ACTATTACTTGTAAACTCTC+AGG | 0.465714 | 7_1:-4840676 | None:intergenic |
| GCACATCAAATCTTATGATT+GGG | 0.469520 | 7_1:+4839228 | Msa1006160:CDS |
| TTGCTGAAATATGGCATGTC+CGG | 0.469806 | 7_1:-4838665 | None:intergenic |
| AGAAGACCTTGGCTTGAAAC+CGG | 0.474599 | 7_1:+4838646 | Msa1006160:CDS |
| AGGAAAAGAAAGACTATGAA+TGG | 0.478550 | 7_1:+4840635 | Msa1006160:CDS |
| CCAGATTCCGGAGAAAAGAT+TGG | 0.489680 | 7_1:+4839850 | Msa1006160:CDS |
| TATGCACAATGCCTTCCATC+AGG | 0.503855 | 7_1:-4840013 | None:intergenic |
| GAAAAGATTGGCGAAAATCA+AGG | 0.514528 | 7_1:+4839862 | Msa1006160:CDS |
| ATCATAAGATTTGATGTGCA+TGG | 0.522282 | 7_1:-4839224 | None:intergenic |
| GTCTTTGCTAATGCTGCTCA+TGG | 0.525842 | 7_1:+4836726 | Msa1006160:CDS |
| TTTCGCACTCATAAATGTGA+AGG | 0.537101 | 7_1:-4838718 | None:intergenic |
| CCTCCATACTCTGATCCTGA+TGG | 0.550286 | 7_1:+4839998 | Msa1006160:CDS |
| GGAATCAAGCCAGAAGACCT+TGG | 0.554306 | 7_1:+4838635 | Msa1006160:CDS |
| TCCTCTGACGAAGATGTCGC+CGG | 0.556146 | 7_1:-4836659 | None:intergenic |
| GACATCAGCAGGCAAGTCAC+CGG | 0.556152 | 7_1:-4839251 | None:intergenic |
| AGGAATAACCATACCAGAAG+AGG | 0.562233 | 7_1:+4840615 | Msa1006160:CDS |
| GATAAGAAAGAGATTCAAAG+AGG | 0.562874 | 7_1:-4836317 | None:intergenic |
| TCACTTTGTGAGACATCAGC+AGG | 0.570104 | 7_1:-4839262 | None:intergenic |
| TCACAATCACCCGGGAATGA+CGG | 0.574508 | 7_1:+4839177 | Msa1006160:CDS |
| AGTTGGAAAACGGGAAACTT+CGG | 0.575633 | 7_1:-4840039 | None:intergenic |
| ATCAAATCTTATGATTGGGC+CGG | 0.576035 | 7_1:+4839232 | Msa1006160:CDS |
| AATAACTGAAACAGCACCAA+AGG | 0.581852 | 7_1:-4840835 | None:intergenic |
| TAAAGGATCGAAGGATTGCA+TGG | 0.583409 | 7_1:-4839905 | None:intergenic |
| GCATGTCCGGTTTCAAGCCA+AGG | 0.589898 | 7_1:-4838652 | None:intergenic |
| TGAAGAGGAATTACTCCAGA+AGG | 0.596954 | 7_1:-4839157 | None:intergenic |
| AATTCCTCTTCACAATCACC+CGG | 0.602782 | 7_1:+4839168 | Msa1006160:CDS |
| TTTCAATGTGTTGAGAAGAA+GGG | 0.603610 | 7_1:-4836755 | None:intergenic |
| GAGTAAAACAGAGGAAAACA+GGG | 0.605458 | 7_1:-4836346 | None:intergenic |
| TCATCAGGATAAAGGATCGA+AGG | 0.612179 | 7_1:-4839914 | None:intergenic |
| ATCCTTTATCCTGATGATGG+TGG | 0.618101 | 7_1:+4839920 | Msa1006160:CDS |
| AAGAACATCTAAAACAGCAC+AGG | 0.623070 | 7_1:-4839972 | None:intergenic |
| AATGGGAATTGAGAGAAACA+TGG | 0.626246 | 7_1:+4836563 | Msa1006160:exon |
| ACCGGCGACATCTTCGTCAG+AGG | 0.627745 | 7_1:+4836658 | Msa1006160:CDS |
| CCATATTTCAGCAATATCAA+CGG | 0.649313 | 7_1:+4838674 | Msa1006160:CDS |
| CATACTCTGATCCTGATGGA+AGG | 0.655222 | 7_1:+4840002 | Msa1006160:CDS |
| ATACCAATAACATGAAACCA+AGG | 0.656862 | 7_1:+4836631 | Msa1006160:CDS |
| AGAGGAATTACTCCAGAAGG+TGG | 0.673932 | 7_1:-4839154 | None:intergenic |
| TCAGAGGACGAAGATGACGC+AGG | 0.673955 | 7_1:+4836674 | Msa1006160:CDS |
| ATTCCCGGGTGATTGTGAAG+AGG | 0.676921 | 7_1:-4839172 | None:intergenic |
| CAGAAAACAGAGTAAAACAG+AGG | 0.677557 | 7_1:-4836355 | None:intergenic |
| CCATCAGGATCAGAGTATGG+AGG | 0.686871 | 7_1:-4839998 | None:intergenic |
| TATTTCAGCAATATCAACGG+TGG | 0.692573 | 7_1:+4838677 | Msa1006160:CDS |
| ATTCCTCTTCACAATCACCC+GGG | 0.694001 | 7_1:+4839169 | Msa1006160:CDS |
| AGTAAAACAGAGGAAAACAG+GGG | 0.718743 | 7_1:-4836345 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTA+TGG | + | chr7_1:4836805-4836824 | Msa1006160:intron | 0.0% |
| !!! | TTTATTATTTTATTTTTTAT+GGG | + | chr7_1:4836984-4837003 | Msa1006160:intron | 0.0% |
| !!! | TTTAATTTAATTAATATTTT+AGG | + | chr7_1:4837073-4837092 | Msa1006160:intron | 0.0% |
| !!! | TTAATTTAATTAATATTTTA+GGG | + | chr7_1:4837074-4837093 | Msa1006160:intron | 0.0% |
| !! | AATTAAAATAAACGAAAATT+TGG | - | chr7_1:4838560-4838579 | None:intergenic | 10.0% |
| !! | AAATGAATTAATAAAGTAAA+TGG | + | chr7_1:4838951-4838970 | Msa1006160:intron | 10.0% |
| !!! | TAATCTAATAAATTTGTTTA+TGG | + | chr7_1:4839036-4839055 | Msa1006160:intron | 10.0% |
| !!! | ATAAATTTGGATTTAAAATT+GGG | - | chr7_1:4839627-4839646 | None:intergenic | 10.0% |
| !!! | TATAAATTTGGATTTAAAAT+TGG | - | chr7_1:4839628-4839647 | None:intergenic | 10.0% |
| !! | TAATGGTAAAAAAGAAAAAT+TGG | - | chr7_1:4836834-4836853 | None:intergenic | 15.0% |
| !! | AAACTCATTTATCTATAATA+AGG | + | chr7_1:4837231-4837250 | Msa1006160:intron | 15.0% |
| !!! | TTTTTTTCTTTATAGATTGT+AGG | + | chr7_1:4838367-4838386 | Msa1006160:intron | 15.0% |
| !!! | TTTTTTCTTTATAGATTGTA+GGG | + | chr7_1:4838368-4838387 | Msa1006160:intron | 15.0% |
| !!! | GATATTTTAAAAAAGTAAAC+GGG | - | chr7_1:4838758-4838777 | None:intergenic | 15.0% |
| !!! | CGATATTTTAAAAAAGTAAA+CGG | - | chr7_1:4838759-4838778 | None:intergenic | 15.0% |
| !!! | CGTTTACTTTTTTAAAATAT+CGG | + | chr7_1:4838757-4838776 | Msa1006160:intron | 15.0% |
| !! | TTAAAAGATGTAAAATAAAG+TGG | + | chr7_1:4838879-4838898 | Msa1006160:intron | 15.0% |
| !!! | CCTTTTATTATATTATAGAA+GGG | - | chr7_1:4839319-4839338 | None:intergenic | 15.0% |
| !!! | TCCTTTTATTATATTATAGA+AGG | - | chr7_1:4839320-4839339 | None:intergenic | 15.0% |
| !! | TTTAAATCCAAATTTATATG+TGG | + | chr7_1:4839630-4839649 | Msa1006160:intron | 15.0% |
| !! | TTACTTTCTCAAATTATTAT+TGG | - | chr7_1:4840351-4840370 | None:intergenic | 15.0% |
| !! | AATAAAAAAAATTATCTGCA+AGG | + | chr7_1:4840906-4840925 | Msa1006160:three_prime_UTR | 15.0% |
| !! | TGCAAAAACCATTTAAAAAA+GGG | - | chr7_1:4836857-4836876 | None:intergenic | 20.0% |
| !! | TTGCAAAAACCATTTAAAAA+AGG | - | chr7_1:4836858-4836877 | None:intergenic | 20.0% |
| !! | AAAATTTAGACTAGTAATGA+AGG | + | chr7_1:4836900-4836919 | Msa1006160:intron | 20.0% |
| !! | TAAAGTACACTTCTAAATTA+GGG | - | chr7_1:4837440-4837459 | None:intergenic | 20.0% |
| !! | TTAAAGTACACTTCTAAATT+AGG | - | chr7_1:4837441-4837460 | None:intergenic | 20.0% |
| !! | TTTAAACAGTACAAATTGTT+GGG | + | chr7_1:4837456-4837475 | Msa1006160:intron | 20.0% |
| !! | TTTGTTGAAGATAAATTTGA+TGG | + | chr7_1:4837777-4837796 | Msa1006160:intron | 20.0% |
| !! | AAACACATAATTTAATGTGA+TGG | + | chr7_1:4837838-4837857 | Msa1006160:intron | 20.0% |
| !! | AATAAACTAGTACTATTTGT+AGG | + | chr7_1:4838331-4838350 | Msa1006160:intron | 20.0% |
| !!! | TTCTTTTTTCTTTTGAGAAA+TGG | + | chr7_1:4838479-4838498 | Msa1006160:intron | 20.0% |
| !! | ATTATTGATCAAATCATTCT+TGG | - | chr7_1:4838532-4838551 | None:intergenic | 20.0% |
| !! | AGTTAAAATCTTAACTATCA+TGG | - | chr7_1:4838594-4838613 | None:intergenic | 20.0% |
| !!! | AAAACAAATCTAGCATTTTT+AGG | - | chr7_1:4838860-4838879 | None:intergenic | 20.0% |
| !! | TGAATTAATAAAGTAAATGG+TGG | + | chr7_1:4838954-4838973 | Msa1006160:intron | 20.0% |
| !!! | TTTCAAGTTATGTTTACAAT+TGG | + | chr7_1:4838990-4839009 | Msa1006160:intron | 20.0% |
| !! | CCCTTCTATAATATAATAAA+AGG | + | chr7_1:4839316-4839335 | Msa1006160:intron | 20.0% |
| !!! | ATGCACATTTTTAATCTAAT+TGG | + | chr7_1:4839539-4839558 | Msa1006160:intron | 20.0% |
| !!! | ACATAACTTAAATACACTTT+TGG | - | chr7_1:4839688-4839707 | None:intergenic | 20.0% |
| !! | TTTATAATGTTACAATGCAT+AGG | - | chr7_1:4839754-4839773 | None:intergenic | 20.0% |
| !! | TATGCATTGTAACATTATAA+AGG | + | chr7_1:4839753-4839772 | Msa1006160:intron | 20.0% |
| !!! | ATTTACCTAGTTTTAATGAA+TGG | + | chr7_1:4840074-4840093 | Msa1006160:intron | 20.0% |
| !! | TTAATCAAATAGTTGAAGTT+TGG | + | chr7_1:4840247-4840266 | Msa1006160:intron | 20.0% |
| !! | TTAGGATACATCATAATATA+TGG | - | chr7_1:4840490-4840509 | None:intergenic | 20.0% |
| !! | ATAGCGTAAATCATTATTTA+TGG | + | chr7_1:4840542-4840561 | Msa1006160:intron | 20.0% |
| !!! | AAAAAGATTCATTGCATTTT+AGG | - | chr7_1:4840580-4840599 | None:intergenic | 20.0% |
| !!! | TGAATCTTTTTTGAAATTTC+AGG | + | chr7_1:4840589-4840608 | Msa1006160:intron | 20.0% |
| !!! | AGAATTGAATTTTGGGAAAA+GGG | - | chr7_1:4836414-4836433 | None:intergenic | 25.0% |
| !!! | TGTTTTTGCTCTTTTTCAAT+GGG | + | chr7_1:4836546-4836565 | Msa1006160:exon | 25.0% |
| !!! | TACCATTACCCTTTTTTAAA+TGG | + | chr7_1:4836846-4836865 | Msa1006160:intron | 25.0% |
| ! | AACCATTTAAAAAAGGGTAA+TGG | - | chr7_1:4836851-4836870 | None:intergenic | 25.0% |
| !! | AATTATGTGTACTTTTCTCA+TGG | - | chr7_1:4837286-4837305 | None:intergenic | 25.0% |
| !! | AATTAGGGTTTTTATAGTAG+TGG | - | chr7_1:4837425-4837444 | None:intergenic | 25.0% |
| ! | CTTTAAACAGTACAAATTGT+TGG | + | chr7_1:4837455-4837474 | Msa1006160:intron | 25.0% |
| ! | GTATATCTAAACTTAAGTCA+TGG | + | chr7_1:4837530-4837549 | Msa1006160:intron | 25.0% |
| ! | ATAAATACAACCAAATCAAG+CGG | - | chr7_1:4837630-4837649 | None:intergenic | 25.0% |
| !!! | AGTGTTGTTTAACTATGAAA+TGG | + | chr7_1:4837720-4837739 | Msa1006160:intron | 25.0% |
| !! | AAGATAAATTTGATGGTTGT+AGG | + | chr7_1:4837784-4837803 | Msa1006160:intron | 25.0% |
| ! | GTAGGAAGAAATCAATTAAT+TGG | + | chr7_1:4837802-4837821 | Msa1006160:intron | 25.0% |
| !! | CACTCTTACCTTATAATTTT+GGG | - | chr7_1:4837992-4838011 | None:intergenic | 25.0% |
| !! | ACACTCTTACCTTATAATTT+TGG | - | chr7_1:4837993-4838012 | None:intergenic | 25.0% |
| ! | TACAAAAGAATGCGAAATAA+AGG | - | chr7_1:4838434-4838453 | None:intergenic | 25.0% |
| !! | ATGTGAAGGTAAGTAATTTT+TGG | - | chr7_1:4838707-4838726 | None:intergenic | 25.0% |
| !! | TTATGAGTGCGAAAAATTTT+CGG | + | chr7_1:4838727-4838746 | Msa1006160:CDS | 25.0% |
| !!! | AAGACATTGTGATAGTTTTT+TGG | + | chr7_1:4838821-4838840 | Msa1006160:intron | 25.0% |
| ! | CAGATTAAAATTCAGTGATA+TGG | + | chr7_1:4839377-4839396 | Msa1006160:intron | 25.0% |
| !! | CATTGATTAATTTGATGACA+TGG | - | chr7_1:4839469-4839488 | None:intergenic | 25.0% |
| ! | CATGTCATCAAATTAATCAA+TGG | + | chr7_1:4839467-4839486 | Msa1006160:intron | 25.0% |
| ! | GTTTCTTACAATTGTAACTT+TGG | + | chr7_1:4839658-4839677 | Msa1006160:intron | 25.0% |
| !! | TTTCATTTTGTGAAGATTTG+TGG | + | chr7_1:4839780-4839799 | Msa1006160:intron | 25.0% |
| ! | CTTATCCATTCATTAAAACT+AGG | - | chr7_1:4840082-4840101 | None:intergenic | 25.0% |
| !!! | CTAGTTTTAATGAATGGATA+AGG | + | chr7_1:4840080-4840099 | Msa1006160:intron | 25.0% |
| !!! | AAATTATTATTGGTGTCAAC+AGG | - | chr7_1:4840341-4840360 | None:intergenic | 25.0% |
| ! | TGAAAAGTTGAATAATGCAA+AGG | - | chr7_1:4840521-4840540 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAATTTCAGGTGA+AGG | + | chr7_1:4840595-4840614 | Msa1006160:intron | 25.0% |
| ! | TGTGTTTGTTTAGAGAAATT+TGG | + | chr7_1:4840759-4840778 | Msa1006160:three_prime_UTR | 25.0% |
| !!! | TTTTTGGTTTTTATCTCCTT+TGG | + | chr7_1:4840819-4840838 | Msa1006160:three_prime_UTR | 25.0% |
| ! | ATTATGTACATACCAAAAAC+TGG | + | chr7_1:4840855-4840874 | Msa1006160:three_prime_UTR | 25.0% |
| !! | ATTCAAAGAGGTTTTTGAAG+AGG | - | chr7_1:4836308-4836327 | None:intergenic | 30.0% |
| GATAAGAAAGAGATTCAAAG+AGG | - | chr7_1:4836320-4836339 | None:intergenic | 30.0% | |
| !! | GAGAATTGAATTTTGGGAAA+AGG | - | chr7_1:4836415-4836434 | None:intergenic | 30.0% |
| !! | AGCGTTGAGAATTGAATTTT+GGG | - | chr7_1:4836421-4836440 | None:intergenic | 30.0% |
| ! | AGAGGATTTTTGTAGAGAAA+TGG | - | chr7_1:4836461-4836480 | None:intergenic | 30.0% |
| !! | TTTGGTCCATTTTTCTTATC+TGG | + | chr7_1:4836482-4836501 | Msa1006160:five_prime_UTR | 30.0% |
| !! | TTGGTCCATTTTTCTTATCT+GGG | + | chr7_1:4836483-4836502 | Msa1006160:five_prime_UTR | 30.0% |
| AATGACCCAGATAAGAAAAA+TGG | - | chr7_1:4836491-4836510 | None:intergenic | 30.0% | |
| TTGAAAAAGAGCAAAAACAG+AGG | - | chr7_1:4836545-4836564 | None:intergenic | 30.0% | |
| !!! | CTGTTTTTGCTCTTTTTCAA+TGG | + | chr7_1:4836545-4836564 | Msa1006160:exon | 30.0% |
| AGAAACATGGTTGAAAGAAA+AGG | + | chr7_1:4836576-4836595 | Msa1006160:CDS | 30.0% | |
| GAAACATGGTTGAAAGAAAA+GGG | + | chr7_1:4836577-4836596 | Msa1006160:CDS | 30.0% | |
| ATACCAATAACATGAAACCA+AGG | + | chr7_1:4836631-4836650 | Msa1006160:CDS | 30.0% | |
| TTTCCTTGGTTTCATGTTAT+TGG | - | chr7_1:4836637-4836656 | None:intergenic | 30.0% | |
| TTTCAATGTGTTGAGAAGAA+GGG | - | chr7_1:4836758-4836777 | None:intergenic | 30.0% | |
| ATTTCAATGTGTTGAGAAGA+AGG | - | chr7_1:4836759-4836778 | None:intergenic | 30.0% | |
| AATCAGGTATCAATCTATCT+TGG | - | chr7_1:4837030-4837049 | None:intergenic | 30.0% | |
| !! | ATAGTGTTGACATCATGTAA+TGG | - | chr7_1:4837323-4837342 | None:intergenic | 30.0% |
| ATCTAAACTTAAGTCATGGT+AGG | + | chr7_1:4837534-4837553 | Msa1006160:intron | 30.0% | |
| TCTAAACTTAAGTCATGGTA+GGG | + | chr7_1:4837535-4837554 | Msa1006160:intron | 30.0% | |
| TCTTCAAAAGACATCTAGTT+AGG | - | chr7_1:4837660-4837679 | None:intergenic | 30.0% | |
| ATTTATGAACCAACTACATG+TGG | - | chr7_1:4837690-4837709 | None:intergenic | 30.0% | |
| GCTTGATATTAGCAAGTTAT+AGG | + | chr7_1:4837754-4837773 | Msa1006160:intron | 30.0% | |
| !! | TGTGATGGATGTAAAAAATG+AGG | + | chr7_1:4837853-4837872 | Msa1006160:intron | 30.0% |
| !!! | TGTTACTTTTTGAGAGTGAA+TGG | + | chr7_1:4837883-4837902 | Msa1006160:intron | 30.0% |
| AGATTCGACCCAAAATTATA+AGG | + | chr7_1:4837981-4838000 | Msa1006160:intron | 30.0% | |
| ACTTGACATTGTGTTTATCA+TGG | + | chr7_1:4838193-4838212 | Msa1006160:intron | 30.0% | |
| ! | TACAAAACTAGCTTGTAACA+CGG | - | chr7_1:4838229-4838248 | None:intergenic | 30.0% |
| AAAAATCGAGAGAAAAGAAC+GGG | - | chr7_1:4838302-4838321 | None:intergenic | 30.0% | |
| CAAAAATCGAGAGAAAAGAA+CGG | - | chr7_1:4838303-4838322 | None:intergenic | 30.0% | |
| !! | TTTTCTTTTGAGAAATGGAG+AGG | + | chr7_1:4838484-4838503 | Msa1006160:intron | 30.0% |
| CCATATTTCAGCAATATCAA+CGG | + | chr7_1:4838674-4838693 | Msa1006160:CDS | 30.0% | |
| ACATAACTTGAAAGCAGTTT+AGG | - | chr7_1:4838983-4839002 | None:intergenic | 30.0% | |
| !!! | ATATTTTGATGTGTTGCAGA+TGG | + | chr7_1:4839117-4839136 | Msa1006160:intron | 30.0% |
| !!! | TATTTTGATGTGTTGCAGAT+GGG | + | chr7_1:4839118-4839137 | Msa1006160:intron | 30.0% |
| ATCATAAGATTTGATGTGCA+TGG | - | chr7_1:4839227-4839246 | None:intergenic | 30.0% | |
| TGCACATCAAATCTTATGAT+TGG | + | chr7_1:4839227-4839246 | Msa1006160:CDS | 30.0% | |
| GCACATCAAATCTTATGATT+GGG | + | chr7_1:4839228-4839247 | Msa1006160:CDS | 30.0% | |
| ! | GATTTTATTCTGTTTCGTGT+CGG | + | chr7_1:4839338-4839357 | Msa1006160:intron | 30.0% |
| ! | GGATTTAAAATTGGGTGATA+TGG | - | chr7_1:4839619-4839638 | None:intergenic | 30.0% |
| TCCAAATTTATATGTGGAGA+AGG | + | chr7_1:4839636-4839655 | Msa1006160:intron | 30.0% | |
| ACCTTCTCCACATATAAATT+TGG | - | chr7_1:4839640-4839659 | None:intergenic | 30.0% | |
| ! | GTATATCACGTGCTTTTATT+TGG | + | chr7_1:4839706-4839725 | Msa1006160:intron | 30.0% |
| TAAATATGTACCTGGAAAGT+TGG | - | chr7_1:4840059-4840078 | None:intergenic | 30.0% | |
| AAACTAGGTAAATATGTACC+TGG | - | chr7_1:4840067-4840086 | None:intergenic | 30.0% | |
| !! | AGGTTTTATATATCGTTCGA+TGG | + | chr7_1:4840100-4840119 | Msa1006160:intron | 30.0% |
| TGGTTAAAACCATATGTGTA+CGG | + | chr7_1:4840120-4840139 | Msa1006160:intron | 30.0% | |
| AAACTATGACATCGTGTAAA+AGG | - | chr7_1:4840167-4840186 | None:intergenic | 30.0% | |
| TTTACAGTGATGAATCGAAT+TGG | + | chr7_1:4840190-4840209 | Msa1006160:intron | 30.0% | |
| AATAGTTGAAGTTTGGTTAG+AGG | + | chr7_1:4840254-4840273 | Msa1006160:intron | 30.0% | |
| ! | ATATACTGACACGTTTTCAA+TGG | - | chr7_1:4840296-4840315 | None:intergenic | 30.0% |
| ! | AATGCAAAGGTATAGCATTT+AGG | - | chr7_1:4840508-4840527 | None:intergenic | 30.0% |
| AGGAAAAGAAAGACTATGAA+TGG | + | chr7_1:4840635-4840654 | Msa1006160:CDS | 30.0% | |
| ACTATTACTTGTAAACTCTC+AGG | - | chr7_1:4840679-4840698 | None:intergenic | 30.0% | |
| ! | TGCTTCTTAGATAGTGTTTT+TGG | + | chr7_1:4840803-4840822 | Msa1006160:three_prime_UTR | 30.0% |
| TACATACCAAAAACTGGAAA+GGG | + | chr7_1:4840861-4840880 | Msa1006160:three_prime_UTR | 30.0% | |
| !! | GAGGTTTTTGAAGAGGTAAA+TGG | - | chr7_1:4836301-4836320 | None:intergenic | 35.0% |
| AGTAAAACAGAGGAAAACAG+GGG | - | chr7_1:4836348-4836367 | None:intergenic | 35.0% | |
| GAGTAAAACAGAGGAAAACA+GGG | - | chr7_1:4836349-4836368 | None:intergenic | 35.0% | |
| AGAGTAAAACAGAGGAAAAC+AGG | - | chr7_1:4836350-4836369 | None:intergenic | 35.0% | |
| CAGAAAACAGAGTAAAACAG+AGG | - | chr7_1:4836358-4836377 | None:intergenic | 35.0% | |
| !!! | GAGCGTTGAGAATTGAATTT+TGG | - | chr7_1:4836422-4836441 | None:intergenic | 35.0% |
| CTCTACAAAAATCCTCTCTT+TGG | + | chr7_1:4836464-4836483 | Msa1006160:five_prime_UTR | 35.0% | |
| AAGAAAAATGGACCAAAGAG+AGG | - | chr7_1:4836479-4836498 | None:intergenic | 35.0% | |
| AATGGGAATTGAGAGAAACA+TGG | + | chr7_1:4836563-4836582 | Msa1006160:exon | 35.0% | |
| ACATGAAACCAAGGAAAAAC+CGG | + | chr7_1:4836640-4836659 | Msa1006160:CDS | 35.0% | |
| ! | GAAATGCTTCGTTCTGTTTT+AGG | + | chr7_1:4836774-4836793 | Msa1006160:CDS | 35.0% |
| AATGAGAAACGACACAAATC+AGG | - | chr7_1:4837046-4837065 | None:intergenic | 35.0% | |
| ! | TTTTTATAGTAGTGGTGGCA+TGG | - | chr7_1:4837417-4837436 | None:intergenic | 35.0% |
| ! | TAGGGTTTTTATAGTAGTGG+TGG | - | chr7_1:4837422-4837441 | None:intergenic | 35.0% |
| AGAAACACAAGTGCTATAGA+TGG | - | chr7_1:4837575-4837594 | None:intergenic | 35.0% | |
| GATGGATGTAAAAAATGAGG+TGG | + | chr7_1:4837856-4837875 | Msa1006160:intron | 35.0% | |
| ! | TATAAGGTAAGAGTGTGTCT+AGG | + | chr7_1:4837997-4838016 | Msa1006160:intron | 35.0% |
| AAAATCGGACAATTTGAGTG+TGG | - | chr7_1:4838078-4838097 | None:intergenic | 35.0% | |
| ! | ACACTCAAATTGTCCGATTT+TGG | + | chr7_1:4838077-4838096 | Msa1006160:intron | 35.0% |
| AAAATCGGACAATTTGAGTG+TGG | - | chr7_1:4838078-4838097 | None:intergenic | 35.0% | |
| ! | ACACTCAAATTGTCCGATTT+TGG | + | chr7_1:4838077-4838096 | Msa1006160:intron | 35.0% |
| TGACATTGTGTTTATCATGG+TGG | + | chr7_1:4838196-4838215 | Msa1006160:intron | 35.0% | |
| !!! | CAAGCTAGTTTTGTAAGAGT+TGG | + | chr7_1:4838234-4838253 | Msa1006160:intron | 35.0% |
| CCGTTGATATTGCTGAAATA+TGG | - | chr7_1:4838677-4838696 | None:intergenic | 35.0% | |
| TATTTCAGCAATATCAACGG+TGG | + | chr7_1:4838677-4838696 | Msa1006160:CDS | 35.0% | |
| TTTCGCACTCATAAATGTGA+AGG | - | chr7_1:4838721-4838740 | None:intergenic | 35.0% | |
| !!! | GTTTTTAGCAAGCTTCTCTT+TGG | + | chr7_1:4839199-4839218 | Msa1006160:CDS | 35.0% |
| ATCAAATCTTATGATTGGGC+CGG | + | chr7_1:4839232-4839251 | Msa1006160:CDS | 35.0% | |
| GGATGAGTATTCTTCGAATT+GGG | - | chr7_1:4839448-4839467 | None:intergenic | 35.0% | |
| TGGATGAGTATTCTTCGAAT+TGG | - | chr7_1:4839449-4839468 | None:intergenic | 35.0% | |
| ! | ATTTTCGCCAATCTTTTCTC+CGG | - | chr7_1:4839860-4839879 | None:intergenic | 35.0% |
| GAAAAGATTGGCGAAAATCA+AGG | + | chr7_1:4839862-4839881 | Msa1006160:CDS | 35.0% | |
| ! | AAGAACATCTAAAACAGCAC+AGG | - | chr7_1:4839975-4839994 | None:intergenic | 35.0% |
| !!! | TGTGCTGTTTTAGATGTTCT+TGG | + | chr7_1:4839974-4839993 | Msa1006160:CDS | 35.0% |
| AAGTTTGGTTAGAGGATTCA+GGG | + | chr7_1:4840262-4840281 | Msa1006160:intron | 35.0% | |
| TATGCGTGTTAGTGTTATGT+TGG | + | chr7_1:4840393-4840412 | Msa1006160:intron | 35.0% | |
| TCTCGAACACTTCATATTGA+AGG | - | chr7_1:4840448-4840467 | None:intergenic | 35.0% | |
| ! | TTCAATATGAAGTGTTCGAG+AGG | + | chr7_1:4840447-4840466 | Msa1006160:intron | 35.0% |
| !! | GTTCGAGAGGTATCAATATT+TGG | + | chr7_1:4840460-4840479 | Msa1006160:intron | 35.0% |
| ! | TTTCTTTTCCTCTTCTGGTA+TGG | - | chr7_1:4840626-4840645 | None:intergenic | 35.0% |
| ! | TAGTCTTTCTTTTCCTCTTC+TGG | - | chr7_1:4840631-4840650 | None:intergenic | 35.0% |
| AATAACTGAAACAGCACCAA+AGG | - | chr7_1:4840838-4840857 | None:intergenic | 35.0% | |
| GTACATACCAAAAACTGGAA+AGG | + | chr7_1:4840860-4840879 | Msa1006160:three_prime_UTR | 35.0% | |
| ! | AATTTGCCCTTTCCAGTTTT+TGG | - | chr7_1:4840870-4840889 | None:intergenic | 35.0% |
| CTCATGGAAACACAAGTACA+TGG | - | chr7_1:4837270-4837289 | None:intergenic | 40.0% | |
| CAGTACAAATTGTTGGGAGT+TGG | + | chr7_1:4837462-4837481 | Msa1006160:intron | 40.0% | |
| TCCTTGTGTCACATTGTCAT+TGG | + | chr7_1:4837603-4837622 | Msa1006160:intron | 40.0% | |
| TCCAATGACAATGTGACACA+AGG | - | chr7_1:4837607-4837626 | None:intergenic | 40.0% | |
| GATAATGTGCCACATGTAGT+TGG | + | chr7_1:4837678-4837697 | Msa1006160:intron | 40.0% | |
| CTATGAAATGGTCAACCACT+AGG | + | chr7_1:4837732-4837751 | Msa1006160:intron | 40.0% | |
| CTTGCTAATATCAAGCCTAG+TGG | - | chr7_1:4837750-4837769 | None:intergenic | 40.0% | |
| ! | ATGGTGTTAAGAGTCTCGTA+TGG | + | chr7_1:4837902-4837921 | Msa1006160:intron | 40.0% |
| GAAGATCTCACTTTACGAGT+TGG | + | chr7_1:4837940-4837959 | Msa1006160:intron | 40.0% | |
| ! | AGAGTGTGTCTAGGATCTAT+TGG | + | chr7_1:4838006-4838025 | Msa1006160:intron | 40.0% |
| ! | GAGTGTGTCTAGGATCTATT+GGG | + | chr7_1:4838007-4838026 | Msa1006160:intron | 40.0% |
| !! | TATAGCGGTGAGTTGATAGT+TGG | - | chr7_1:4838036-4838055 | None:intergenic | 40.0% |
| ACTATCAACTCACCGCTATA+AGG | + | chr7_1:4838036-4838055 | Msa1006160:intron | 40.0% | |
| ACTCTTCTCACGACCAAAAT+CGG | - | chr7_1:4838142-4838161 | None:intergenic | 40.0% | |
| TCATTCTTGGAATCGTACAG+AGG | - | chr7_1:4838519-4838538 | None:intergenic | 40.0% | |
| TTGCTGAAATATGGCATGTC+CGG | - | chr7_1:4838668-4838687 | None:intergenic | 40.0% | |
| ! | ATATTTTGCTTGCCACCTTC+TGG | + | chr7_1:4839142-4839161 | Msa1006160:CDS | 40.0% |
| TGAAGAGGAATTACTCCAGA+AGG | - | chr7_1:4839160-4839179 | None:intergenic | 40.0% | |
| AATTCCTCTTCACAATCACC+CGG | + | chr7_1:4839168-4839187 | Msa1006160:CDS | 40.0% | |
| TTGCTAAAAACCGTCATTCC+CGG | - | chr7_1:4839190-4839209 | None:intergenic | 40.0% | |
| ! | CAATCTTTTCTCCGGAATCT+GGG | - | chr7_1:4839852-4839871 | None:intergenic | 40.0% |
| TAAAGGATCGAAGGATTGCA+TGG | - | chr7_1:4839908-4839927 | None:intergenic | 40.0% | |
| TCATCAGGATAAAGGATCGA+AGG | - | chr7_1:4839917-4839936 | None:intergenic | 40.0% | |
| TCGATCCTTTATCCTGATGA+TGG | + | chr7_1:4839917-4839936 | Msa1006160:CDS | 40.0% | |
| !! | ATCCTTTATCCTGATGATGG+TGG | + | chr7_1:4839920-4839939 | Msa1006160:CDS | 40.0% |
| AGTTGGAAAACGGGAAACTT+CGG | - | chr7_1:4840042-4840061 | None:intergenic | 40.0% | |
| TACCTGGAAAGTTGGAAAAC+GGG | - | chr7_1:4840051-4840070 | None:intergenic | 40.0% | |
| GTACCTGGAAAGTTGGAAAA+CGG | - | chr7_1:4840052-4840071 | None:intergenic | 40.0% | |
| TCAAAGAGTCGAAGTTTAGC+TGG | - | chr7_1:4840227-4840246 | None:intergenic | 40.0% | |
| GAAGTTTGGTTAGAGGATTC+AGG | + | chr7_1:4840261-4840280 | Msa1006160:intron | 40.0% | |
| AGTTTGGTTAGAGGATTCAG+GGG | + | chr7_1:4840263-4840282 | Msa1006160:intron | 40.0% | |
| AGGAATAACCATACCAGAAG+AGG | + | chr7_1:4840615-4840634 | Msa1006160:CDS | 40.0% | |
| AGAGAGAGAGAGGTGGTTTA+GGG | - | chr7_1:4836209-4836228 | None:intergenic | 45.0% | |
| ACAGAGGAAAACAGGGGAAA+TGG | - | chr7_1:4836342-4836361 | None:intergenic | 45.0% | |
| GTCTTTGCTAATGCTGCTCA+TGG | + | chr7_1:4836726-4836745 | Msa1006160:CDS | 45.0% | |
| TGTCATTGGACCGCTTGATT+TGG | + | chr7_1:4837617-4837636 | Msa1006160:intron | 45.0% | |
| AGTGGTCTCACGACCAAAAT+CGG | - | chr7_1:4838093-4838112 | None:intergenic | 45.0% | |
| ! | AGAAGACCTTGGCTTGAAAC+CGG | + | chr7_1:4838646-4838665 | Msa1006160:CDS | 45.0% |
| AGAGGAATTACTCCAGAAGG+TGG | - | chr7_1:4839157-4839176 | None:intergenic | 45.0% | |
| ATTCCTCTTCACAATCACCC+GGG | + | chr7_1:4839169-4839188 | Msa1006160:CDS | 45.0% | |
| TGCTAAAAACCGTCATTCCC+GGG | - | chr7_1:4839189-4839208 | None:intergenic | 45.0% | |
| TCACTTTGTGAGACATCAGC+AGG | - | chr7_1:4839265-4839284 | None:intergenic | 45.0% | |
| CGAATTGGGAAATGCCACAT+CGG | - | chr7_1:4839434-4839453 | None:intergenic | 45.0% | |
| ! | CCAATCTTTTCTCCGGAATC+TGG | - | chr7_1:4839853-4839872 | None:intergenic | 45.0% |
| CCAGATTCCGGAGAAAAGAT+TGG | + | chr7_1:4839850-4839869 | Msa1006160:CDS | 45.0% | |
| TGCCACCATCATCAGGATAA+AGG | - | chr7_1:4839925-4839944 | None:intergenic | 45.0% | |
| CTTCCATCAGGATCAGAGTA+TGG | - | chr7_1:4840004-4840023 | None:intergenic | 45.0% | |
| CATACTCTGATCCTGATGGA+AGG | + | chr7_1:4840002-4840021 | Msa1006160:CDS | 45.0% | |
| TATGCACAATGCCTTCCATC+AGG | - | chr7_1:4840016-4840035 | None:intergenic | 45.0% | |
| ! | TTCCCGTTTTCCAACTTTCC+AGG | + | chr7_1:4840046-4840065 | Msa1006160:CDS | 45.0% |
| GTTTGGTTAGAGGATTCAGG+GGG | + | chr7_1:4840264-4840283 | Msa1006160:intron | 45.0% | |
| TTTGGTTAGAGGATTCAGGG+GGG | + | chr7_1:4840265-4840284 | Msa1006160:intron | 45.0% | |
| !! | TGTTGGTGTCATACACGTGT+TGG | + | chr7_1:4840410-4840429 | Msa1006160:intron | 45.0% |
| GTACAGCAGCTCAAAGACTA+TGG | + | chr7_1:4840705-4840724 | Msa1006160:CDS | 45.0% | |
| !!! | GTTTATTATTTTATTTTTTA+TGG | + | chr7_1:4836983-4837002 | Msa1006160:intron | 5.0% |
| GAGAGAGAGAGAGGTGGTTT+AGG | - | chr7_1:4836210-4836229 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr7_1:4836217-4836236 | None:intergenic | 50.0% | |
| !!! | AGATGTCGCCGGTTTTTCCT+TGG | - | chr7_1:4836651-4836670 | None:intergenic | 50.0% |
| !! | ACGCTTGAGTGGCCTTATAG+CGG | - | chr7_1:4838051-4838070 | None:intergenic | 50.0% |
| TGGAATCGTACAGAGGAGCA+AGG | - | chr7_1:4838512-4838531 | None:intergenic | 50.0% | |
| GTTGCTTCTGTTTGTGCAGC+TGG | + | chr7_1:4838614-4838633 | Msa1006160:intron | 50.0% | |
| GGAATCAAGCCAGAAGACCT+TGG | + | chr7_1:4838635-4838654 | Msa1006160:CDS | 50.0% | |
| GGTTTCAAGCCAAGGTCTTC+TGG | - | chr7_1:4838647-4838666 | None:intergenic | 50.0% | |
| ATTCCCGGGTGATTGTGAAG+AGG | - | chr7_1:4839175-4839194 | None:intergenic | 50.0% | |
| TCACAATCACCCGGGAATGA+CGG | + | chr7_1:4839177-4839196 | Msa1006160:CDS | 50.0% | |
| TGACAAGTGAGTTGCCGATG+TGG | + | chr7_1:4839417-4839436 | Msa1006160:intron | 50.0% | |
| ATTTGTGCCAGCCCAGATTC+CGG | + | chr7_1:4839838-4839857 | Msa1006160:intron | 50.0% | |
| TGCATGTTGCCACCATCATC+AGG | - | chr7_1:4839932-4839951 | None:intergenic | 50.0% | |
| CCATCAGGATCAGAGTATGG+AGG | - | chr7_1:4840001-4840020 | None:intergenic | 50.0% | |
| CCTCCATACTCTGATCCTGA+TGG | + | chr7_1:4839998-4840017 | Msa1006160:CDS | 50.0% | |
| TGACGTGCACCGTACACATA+TGG | - | chr7_1:4840132-4840151 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGG+TGG | - | chr7_1:4836216-4836235 | None:intergenic | 55.0% | |
| TCCTCTGACGAAGATGTCGC+CGG | - | chr7_1:4836662-4836681 | None:intergenic | 55.0% | |
| TCAGAGGACGAAGATGACGC+AGG | + | chr7_1:4836674-4836693 | Msa1006160:CDS | 55.0% | |
| AGTGTGGCTTGACGCTTGAG+TGG | - | chr7_1:4838062-4838081 | None:intergenic | 55.0% | |
| AGTGTGGCTTGACGCTTGAG+TGG | - | chr7_1:4838062-4838081 | None:intergenic | 55.0% | |
| GCATGTCCGGTTTCAAGCCA+AGG | - | chr7_1:4838655-4838674 | None:intergenic | 55.0% | |
| GACATCAGCAGGCAAGTCAC+CGG | - | chr7_1:4839254-4839273 | None:intergenic | 55.0% | |
| ! | CTTTTCTCCGGAATCTGGGC+TGG | - | chr7_1:4839848-4839867 | None:intergenic | 55.0% |
| ACCGGCGACATCTTCGTCAG+AGG | + | chr7_1:4836658-4836677 | Msa1006160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 4836196 | 4840960 | 4836196 | ID=Msa1006160;Name=Msa1006160 |
| chr7_1 | mRNA | 4836196 | 4840960 | 4836196 | ID=Msa1006160-mRNA-1;Parent=Msa1006160;Name=Msa1006160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=341|1|1|1|0.8|0.66|6|225|278 |
| chr7_1 | exon | 4836196 | 4836248 | 4836196 | ID=Msa1006160-mRNA-1:exon:1620;Parent=Msa1006160-mRNA-1 |
| chr7_1 | exon | 4836276 | 4836795 | 4836276 | ID=Msa1006160-mRNA-1:exon:1621;Parent=Msa1006160-mRNA-1 |
| chr7_1 | exon | 4838633 | 4838748 | 4838633 | ID=Msa1006160-mRNA-1:exon:1622;Parent=Msa1006160-mRNA-1 |
| chr7_1 | exon | 4839136 | 4839280 | 4839136 | ID=Msa1006160-mRNA-1:exon:1623;Parent=Msa1006160-mRNA-1 |
| chr7_1 | exon | 4839849 | 4840067 | 4839849 | ID=Msa1006160-mRNA-1:exon:1624;Parent=Msa1006160-mRNA-1 |
| chr7_1 | exon | 4840611 | 4840960 | 4840611 | ID=Msa1006160-mRNA-1:exon:1625;Parent=Msa1006160-mRNA-1 |
| chr7_1 | five_prime_UTR | 4836196 | 4836248 | 4836196 | ID=Msa1006160-mRNA-1:five_prime_utr;Parent=Msa1006160-mRNA-1 |
| chr7_1 | five_prime_UTR | 4836276 | 4836563 | 4836276 | ID=Msa1006160-mRNA-1:five_prime_utr;Parent=Msa1006160-mRNA-1 |
| chr7_1 | CDS | 4836564 | 4836795 | 4836564 | ID=Msa1006160-mRNA-1:cds;Parent=Msa1006160-mRNA-1 |
| chr7_1 | CDS | 4838633 | 4838748 | 4838633 | ID=Msa1006160-mRNA-1:cds;Parent=Msa1006160-mRNA-1 |
| chr7_1 | CDS | 4839136 | 4839280 | 4839136 | ID=Msa1006160-mRNA-1:cds;Parent=Msa1006160-mRNA-1 |
| chr7_1 | CDS | 4839849 | 4840067 | 4839849 | ID=Msa1006160-mRNA-1:cds;Parent=Msa1006160-mRNA-1 |
| chr7_1 | CDS | 4840611 | 4840735 | 4840611 | ID=Msa1006160-mRNA-1:cds;Parent=Msa1006160-mRNA-1 |
| chr7_1 | three_prime_UTR | 4840736 | 4840960 | 4840736 | ID=Msa1006160-mRNA-1:three_prime_utr;Parent=Msa1006160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
