Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022580 | XP_013448940.1 | 92.941 | 510 | 36 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1000 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022580 | A0A072U016 | 92.941 | 510 | 36 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1000 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024280 | Msa1022580 | 0.853173 | 2.846873e-61 | -8.615850e-47 |
| Msa0048950 | Msa1022580 | 0.835503 | 1.615419e-56 | -8.615850e-47 |
| Msa0059880 | Msa1022580 | 0.827340 | 1.651698e-54 | -8.615850e-47 |
| Msa0072030 | Msa1022580 | 0.820708 | 5.947366e-53 | -8.615850e-47 |
| Msa0120050 | Msa1022580 | 0.824662 | 7.146690e-54 | -8.615850e-47 |
| Msa0603950 | Msa1022580 | 0.820906 | 5.355283e-53 | -8.615850e-47 |
| Msa0605470 | Msa1022580 | 0.838307 | 3.107696e-57 | -8.615850e-47 |
| Msa0640290 | Msa1022580 | 0.803540 | 3.320046e-49 | -8.615850e-47 |
| Msa0643840 | Msa1022580 | 0.837825 | 4.136162e-57 | -8.615850e-47 |
| Msa0670360 | Msa1022580 | 0.804497 | 2.100194e-49 | -8.615850e-47 |
| Msa0678620 | Msa1022580 | 0.805482 | 1.306721e-49 | -8.615850e-47 |
| Msa0684720 | Msa1022580 | 0.823257 | 1.526580e-53 | -8.615850e-47 |
| Msa0727480 | Msa1022580 | 0.832236 | 1.060821e-55 | -8.615850e-47 |
| Msa0735280 | Msa1022580 | 0.831077 | 2.047275e-55 | -8.615850e-47 |
| Msa0768670 | Msa1022580 | 0.836926 | 7.026897e-57 | -8.615850e-47 |
| Msa0768720 | Msa1022580 | 0.830580 | 2.711232e-55 | -8.615850e-47 |
| Msa0777250 | Msa1022580 | 0.847266 | 1.289568e-59 | -8.615850e-47 |
| Msa0814160 | Msa1022580 | 0.806402 | 8.369394e-50 | -8.615850e-47 |
| Msa0814230 | Msa1022580 | 0.832189 | 1.089758e-55 | -8.615850e-47 |
| Msa0128350 | Msa1022580 | 0.834721 | 2.544993e-56 | -8.615850e-47 |
| Msa0128730 | Msa1022580 | 0.863665 | 2.116097e-64 | -8.615850e-47 |
| Msa0140270 | Msa1022580 | 0.824554 | 7.581801e-54 | -8.615850e-47 |
| Msa0144010 | Msa1022580 | 0.804616 | 1.983450e-49 | -8.615850e-47 |
| Msa0147670 | Msa1022580 | 0.800675 | 1.289574e-48 | -8.615850e-47 |
| Msa0150910 | Msa1022580 | 0.820124 | 8.093877e-53 | -8.615850e-47 |
| Msa0163340 | Msa1022580 | 0.861675 | 8.683918e-64 | -8.615850e-47 |
| Msa0163370 | Msa1022580 | 0.802080 | 6.647130e-49 | -8.615850e-47 |
| Msa0174600 | Msa1022580 | 0.850724 | 1.411219e-60 | -8.615850e-47 |
| Msa0219210 | Msa1022580 | 0.804160 | 2.468347e-49 | -8.615850e-47 |
| Msa0380680 | Msa1022580 | 0.833032 | 6.730909e-56 | -8.615850e-47 |
| Msa0401500 | Msa1022580 | 0.804690 | 1.913610e-49 | -8.615850e-47 |
| Msa0439000 | Msa1022580 | 0.801247 | 9.853672e-49 | -8.615850e-47 |
| Msa0985700 | Msa1022580 | 0.820667 | 6.078291e-53 | -8.615850e-47 |
| Msa0987640 | Msa1022580 | 0.846897 | 1.627695e-59 | -8.615850e-47 |
| Msa1003110 | Msa1022580 | 0.859752 | 3.327545e-63 | -8.615850e-47 |
| Msa1021620 | Msa1022580 | 0.887115 | 1.894371e-72 | -8.615850e-47 |
| Msa1022580 | Msa1046210 | 0.804773 | 1.839300e-49 | -8.615850e-47 |
| Msa1022580 | Msa1060320 | 0.818300 | 2.106940e-52 | -8.615850e-47 |
| Msa1022580 | Msa1076830 | 0.801680 | 8.033520e-49 | -8.615850e-47 |
| Msa1022580 | Msa1091000 | 0.804810 | 1.806984e-49 | -8.615850e-47 |
| Msa1022580 | Msa1106750 | 0.908931 | 9.964283e-82 | -8.615850e-47 |
| Msa1022580 | Msa1109880 | 0.812394 | 4.335432e-51 | -8.615850e-47 |
| Msa1022580 | Msa1109890 | 0.812236 | 4.693766e-51 | -8.615850e-47 |
| Msa1022580 | Msa1133860 | 0.850212 | 1.965026e-60 | -8.615850e-47 |
| Msa1022580 | Msa1149020 | 0.867591 | 1.222900e-65 | -8.615850e-47 |
| Msa1022580 | Msa1150150 | 0.951788 | 9.739919e-110 | -8.615850e-47 |
| Msa1022580 | Msa1269050 | 0.845278 | 4.487299e-59 | -8.615850e-47 |
| Msa1022580 | Msa1286420 | 0.811104 | 8.273962e-51 | -8.615850e-47 |
| Msa1022580 | Msa1323030 | 0.811902 | 5.549972e-51 | -8.615850e-47 |
| Msa1022580 | Msa1323120 | 0.873256 | 1.692947e-67 | -8.615850e-47 |
| Msa1022580 | Msa1368490 | 0.806903 | 6.562480e-50 | -8.615850e-47 |
| Msa1022580 | Msa1376070 | 0.813903 | 2.021999e-51 | -8.615850e-47 |
| Msa1022580 | Msa1377520 | 0.809356 | 1.970063e-50 | -8.615850e-47 |
| Msa1022580 | Msa1407670 | 0.843200 | 1.621411e-58 | -8.615850e-47 |
| Msa1022580 | Msa1420020 | 0.807858 | 4.116650e-50 | -8.615850e-47 |
| Msa1022580 | Msa1421120 | 0.803136 | 4.025750e-49 | -8.615850e-47 |
| Msa1022580 | Msa1445900 | 0.826372 | 2.813174e-54 | -8.615850e-47 |
| Msa1022580 | Msa1447790 | 0.837425 | 5.236659e-57 | -8.615850e-47 |
| Msa1022580 | Msa1449770 | 0.843760 | 1.149557e-58 | -8.615850e-47 |
| Msa1022580 | Msa1459610 | 0.805976 | 1.029058e-49 | -8.615850e-47 |
| Msa0298270 | Msa1022580 | 0.803661 | 3.133960e-49 | -8.615850e-47 |
| Msa0336630 | Msa1022580 | 0.807745 | 4.350643e-50 | -8.615850e-47 |
| Msa0349930 | Msa1022580 | 0.808727 | 2.686386e-50 | -8.615850e-47 |
| Msa0356450 | Msa1022580 | 0.829754 | 4.312927e-55 | -8.615850e-47 |
| Msa0482790 | Msa1022580 | 0.813409 | 2.597117e-51 | -8.615850e-47 |
| Msa0491760 | Msa1022580 | 0.802689 | 4.979974e-49 | -8.615850e-47 |
| Msa0531030 | Msa1022580 | 0.808223 | 3.441462e-50 | -8.615850e-47 |
| Msa0531080 | Msa1022580 | 0.806914 | 6.525341e-50 | -8.615850e-47 |
| Msa0548970 | Msa1022580 | 0.812384 | 4.356382e-51 | -8.615850e-47 |
| Msa0549920 | Msa1022580 | 0.803580 | 3.257281e-49 | -8.615850e-47 |
| Msa0587920 | Msa1022580 | 0.831663 | 1.469517e-55 | -8.615850e-47 |
| Msa0599600 | Msa1022580 | 0.804066 | 2.581572e-49 | -8.615850e-47 |
| Msa0883640 | Msa1022580 | 0.819705 | 1.009363e-52 | -8.615850e-47 |
| Msa0910830 | Msa1022580 | 0.844261 | 8.437456e-59 | -8.615850e-47 |
| Msa0913550 | Msa1022580 | 0.848656 | 5.332193e-60 | -8.615850e-47 |
| Msa0951150 | Msa1022580 | 0.852434 | 4.628567e-61 | -8.615850e-47 |
| Msa0960090 | Msa1022580 | 0.824664 | 7.142615e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022580 | MtrunA17_Chr7g0239421 | 92.941 | 510 | 36 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1000 |
| Msa1022580 | MtrunA17_Chr3g0112211 | 50.000 | 510 | 231 | 10 | 1 | 508 | 1 | 488 | 3.25e-175 | 502 |
| Msa1022580 | MtrunA17_Chr8g0348511 | 45.666 | 473 | 243 | 8 | 39 | 507 | 25 | 487 | 1.21e-138 | 409 |
| Msa1022580 | MtrunA17_Chr2g0327551 | 46.135 | 414 | 198 | 4 | 81 | 483 | 34 | 433 | 5.07e-131 | 388 |
| Msa1022580 | MtrunA17_Chr8g0387371 | 44.844 | 417 | 204 | 5 | 81 | 485 | 94 | 496 | 5.83e-130 | 387 |
| Msa1022580 | MtrunA17_Chr4g0030331 | 52.493 | 341 | 159 | 2 | 81 | 420 | 96 | 434 | 2.69e-129 | 385 |
| Msa1022580 | MtrunA17_Chr4g0024001 | 41.966 | 417 | 228 | 7 | 92 | 508 | 74 | 476 | 5.83e-118 | 355 |
| Msa1022580 | MtrunA17_Chr4g0023991 | 44.286 | 420 | 221 | 7 | 92 | 507 | 63 | 473 | 5.11e-115 | 348 |
| Msa1022580 | MtrunA17_Chr5g0395861 | 41.250 | 400 | 230 | 4 | 85 | 481 | 118 | 515 | 3.91e-106 | 327 |
| Msa1022580 | MtrunA17_Chr2g0322991 | 41.766 | 419 | 228 | 7 | 90 | 501 | 55 | 464 | 4.07e-104 | 320 |
| Msa1022580 | MtrunA17_Chr7g0248241 | 49.035 | 259 | 123 | 2 | 37 | 291 | 37 | 290 | 4.73e-77 | 244 |
| Msa1022580 | MtrunA17_Chr5g0397301 | 54.634 | 205 | 91 | 1 | 88 | 292 | 78 | 280 | 1.02e-72 | 233 |
| Msa1022580 | MtrunA17_Chr5g0397311 | 40.092 | 217 | 106 | 5 | 293 | 498 | 22 | 225 | 2.69e-46 | 161 |
| Msa1022580 | MtrunA17_Chr7g0248231 | 49.219 | 128 | 64 | 1 | 293 | 419 | 4 | 131 | 8.49e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022580 | AT2G37730.1 | 58.103 | 506 | 199 | 5 | 15 | 510 | 12 | 514 | 0.0 | 616 |
| Msa1022580 | AT3G11420.1 | 48.178 | 494 | 243 | 8 | 19 | 507 | 20 | 505 | 1.77e-154 | 450 |
| Msa1022580 | AT5G41460.1 | 50.251 | 398 | 184 | 8 | 92 | 482 | 110 | 500 | 1.96e-132 | 394 |
| Msa1022580 | AT4G11350.1 | 44.376 | 489 | 223 | 13 | 33 | 498 | 35 | 497 | 5.71e-132 | 393 |
| Msa1022580 | AT4G23490.1 | 46.353 | 425 | 201 | 6 | 88 | 498 | 105 | 516 | 2.66e-131 | 392 |
| Msa1022580 | AT1G01570.1 | 46.472 | 411 | 206 | 8 | 85 | 483 | 44 | 452 | 2.98e-123 | 369 |
| Msa1022580 | AT1G01570.2 | 46.472 | 411 | 206 | 8 | 85 | 483 | 75 | 483 | 7.83e-123 | 369 |
| Msa1022580 | AT4G15240.1 | 44.254 | 409 | 215 | 5 | 92 | 497 | 78 | 476 | 1.98e-116 | 352 |
| Msa1022580 | AT1G07850.1 | 47.222 | 396 | 199 | 6 | 92 | 483 | 123 | 512 | 4.84e-114 | 348 |
| Msa1022580 | AT4G00295.1 | 49.722 | 360 | 163 | 8 | 75 | 418 | 55 | 412 | 5.64e-112 | 340 |
| Msa1022580 | AT1G05280.1 | 39.813 | 427 | 241 | 8 | 91 | 507 | 67 | 487 | 2.64e-106 | 326 |
| Msa1022580 | AT1G33250.1 | 41.221 | 393 | 224 | 5 | 93 | 481 | 130 | 519 | 7.36e-105 | 324 |
| Msa1022580 | AT5G12460.1 | 40.189 | 423 | 236 | 9 | 89 | 508 | 33 | 441 | 7.56e-102 | 313 |
| Msa1022580 | AT1G05280.2 | 43.380 | 355 | 191 | 5 | 91 | 436 | 67 | 420 | 6.85e-101 | 311 |
| Msa1022580 | AT4G11350.2 | 48.708 | 271 | 116 | 8 | 33 | 292 | 35 | 293 | 5.04e-75 | 239 |
Find 116 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCGCAGCATTGTCTTCT+TGG | 0.142429 | 7_1:+49086390 | None:intergenic |
| CGTTCCATGTTTGGGAAAAT+TGG | 0.160263 | 7_1:+49087574 | None:intergenic |
| CTCTTTAGCTGTTGCTAAAT+AGG | 0.169545 | 7_1:+49087417 | None:intergenic |
| CAAAGTTGCATTAGTGAAAT+TGG | 0.179177 | 7_1:-49088465 | Msa1022580:CDS |
| GATCGTTATTCTGAGTATTA+TGG | 0.235245 | 7_1:-49088504 | Msa1022580:CDS |
| GAAGAGATCATTGGATTTGA+TGG | 0.267371 | 7_1:+49089211 | None:intergenic |
| GGTCGGGTATTAAAAGTAAA+TGG | 0.275509 | 7_1:+49087343 | None:intergenic |
| GGCGGAGCTTGTGAAGATTT+TGG | 0.288835 | 7_1:-49088538 | Msa1022580:CDS |
| CTTCGGCAGATTCTATGATT+AGG | 0.294698 | 7_1:+49089042 | None:intergenic |
| GTGTGACAAGGTTGATTATA+AGG | 0.297026 | 7_1:-49087203 | Msa1022580:CDS |
| CTGATGAAAACCAGGTTCTT+TGG | 0.305345 | 7_1:+49088431 | None:intergenic |
| AAAAGATATGATGATGGTTC+AGG | 0.309105 | 7_1:-49087232 | Msa1022580:CDS |
| GCATCAACACGTTCCATGTT+TGG | 0.317875 | 7_1:+49087565 | None:intergenic |
| TCTTTAGCTGTTGCTAAATA+GGG | 0.326584 | 7_1:+49087418 | None:intergenic |
| ATGGATCGGATTGAGGGTTT+TGG | 0.334021 | 7_1:-49087280 | Msa1022580:CDS |
| TTCGGCAGATTCTATGATTA+GGG | 0.357382 | 7_1:+49089043 | None:intergenic |
| CATAATCAAATGTACTATAT+TGG | 0.358117 | 7_1:-49088651 | Msa1022580:CDS |
| GTGTTGGCAGAGACTTTATA+TGG | 0.362541 | 7_1:+49088846 | None:intergenic |
| AAACAAAATGTGAGAGATAT+TGG | 0.369336 | 7_1:+49089007 | None:intergenic |
| CATCAACACGTTCCATGTTT+GGG | 0.372831 | 7_1:+49087566 | None:intergenic |
| AACACCGTAACGAGGTTGTC+GGG | 0.384605 | 7_1:+49088687 | None:intergenic |
| GCGGGTTTGGAACATTTGTT+TGG | 0.387276 | 7_1:+49089076 | None:intergenic |
| ATTGGTCAATATCAATATCA+TGG | 0.414518 | 7_1:-49087462 | Msa1022580:CDS |
| AGAGATATTGGTCGGCTCTT+CGG | 0.417149 | 7_1:+49089019 | None:intergenic |
| TCAAGATCCGTGTGTGAAAC+CGG | 0.425631 | 7_1:-49087314 | Msa1022580:CDS |
| GTCGGGTATTAAAAGTAAAT+GGG | 0.428065 | 7_1:+49087344 | None:intergenic |
| GTTTGCTATAAGCTACCCTT+TGG | 0.435594 | 7_1:-49088562 | Msa1022580:CDS |
| ATTGGATTTGATGGTGGGGA+AGG | 0.438539 | 7_1:+49089220 | None:intergenic |
| TTATATGGCGGTGACGTCTC+TGG | 0.439119 | 7_1:+49088861 | None:intergenic |
| ACCATGGCTTATGGCGGCGG+AGG | 0.439626 | 7_1:-49088585 | Msa1022580:CDS |
| CATTTAAAACGTGGAAGACT+TGG | 0.440818 | 7_1:-49087375 | Msa1022580:CDS |
| GAAGAGAGAGAAGAGATCAT+TGG | 0.447905 | 7_1:+49089202 | None:intergenic |
| GAGATAATCAACAATGTAGA+TGG | 0.448839 | 7_1:-49086372 | Msa1022580:CDS |
| TTCTCTCTCTTCCTCAAAGT+GGG | 0.460646 | 7_1:-49089191 | Msa1022580:CDS |
| AACAGCTAAAGAGCTTGAAA+TGG | 0.461484 | 7_1:-49087407 | Msa1022580:CDS |
| ATTGGTCGGCTCTTCGGCTT+CGG | 0.461534 | 7_1:+49089025 | None:intergenic |
| TAATGTGAGGTGGTTTGTAA+TGG | 0.468209 | 7_1:-49088733 | Msa1022580:CDS |
| AATGTGACCAATGGTGCAAC+TGG | 0.469257 | 7_1:+49087619 | None:intergenic |
| GCTAGTAACATCATACAAAT+CGG | 0.470667 | 7_1:-49087533 | Msa1022580:CDS |
| AAAGATATGATGATGGTTCA+GGG | 0.471625 | 7_1:-49087231 | Msa1022580:CDS |
| AACATCATACAAATCGGATC+CGG | 0.473625 | 7_1:-49087527 | Msa1022580:CDS |
| AGCACATCCAGTTGCACCAT+TGG | 0.473959 | 7_1:-49087626 | Msa1022580:CDS |
| GGTCATAGCAAAATGATTGT+TGG | 0.474890 | 7_1:+49087494 | None:intergenic |
| TCAAATGTCTTCTTCTTCGA+TGG | 0.476458 | 7_1:-49089285 | None:intergenic |
| TACACCATGGCTTATGGCGG+CGG | 0.480790 | 7_1:-49088588 | Msa1022580:CDS |
| TTGGATTTGATGGTGGGGAA+GGG | 0.484571 | 7_1:+49089221 | None:intergenic |
| TTGGTCAATATCAATATCAT+GGG | 0.486919 | 7_1:-49087461 | Msa1022580:CDS |
| ACACACGGATCTTGACTAAC+GGG | 0.488417 | 7_1:+49087322 | None:intergenic |
| GATATACGTGGTAACCCATA+TGG | 0.491335 | 7_1:-49087658 | Msa1022580:CDS |
| GTCTAGCCACACGAAGCCTC+TGG | 0.494645 | 7_1:+49088911 | None:intergenic |
| GGTCGGGGATTGACCCGGTC+CGG | 0.495472 | 7_1:-49087259 | Msa1022580:CDS |
| CTTCCCCGACAACCTCGTTA+CGG | 0.497124 | 7_1:-49088691 | Msa1022580:CDS |
| AATGTGAGGTGGTTTGTAAT+GGG | 0.497788 | 7_1:-49088732 | Msa1022580:CDS |
| ATGGGAGATGAGAAAGATTG+TGG | 0.498344 | 7_1:+49089157 | None:intergenic |
| AGATCATTGGATTTGATGGT+GGG | 0.501071 | 7_1:+49089215 | None:intergenic |
| TTTGCCTCATTATTGGAAAG+AGG | 0.503193 | 7_1:-49087137 | Msa1022580:intron |
| CGATCCATAAAATACACAAC+CGG | 0.503463 | 7_1:+49087295 | None:intergenic |
| GCCACCAGAGTTCGCTATAG+TGG | 0.506114 | 7_1:+49088946 | None:intergenic |
| AAATTGCTAGACCCACTTTG+AGG | 0.510114 | 7_1:+49089180 | None:intergenic |
| AATCAAATGTACTATATTGG+TGG | 0.512900 | 7_1:-49088648 | Msa1022580:CDS |
| TTTAAATACACATGTTGGTA+CGG | 0.517569 | 7_1:-49088816 | Msa1022580:CDS |
| GAGATCATTGGATTTGATGG+TGG | 0.521270 | 7_1:+49089214 | None:intergenic |
| CGGATCTTGACTAACGGGTC+GGG | 0.525035 | 7_1:+49087327 | None:intergenic |
| TGCTATAAGCTACCCTTTGG+CGG | 0.527490 | 7_1:-49088559 | Msa1022580:CDS |
| TTCACAAGCTCCGCCGCCAA+AGG | 0.528886 | 7_1:+49088546 | None:intergenic |
| GGATGCTATTGAATAGTAGT+GGG | 0.532135 | 7_1:+49089097 | None:intergenic |
| TCACAAGCTCCGCCGCCAAA+GGG | 0.532160 | 7_1:+49088547 | None:intergenic |
| GTTGATTATAAGGTGGCTCA+TGG | 0.535895 | 7_1:-49087193 | Msa1022580:CDS |
| CTTCTCTCTCTTCCTCAAAG+TGG | 0.539279 | 7_1:-49089192 | Msa1022580:CDS |
| TGTGCTGCTAGTAAGCCATA+TGG | 0.539704 | 7_1:+49087643 | None:intergenic |
| CACACACGGATCTTGACTAA+CGG | 0.540512 | 7_1:+49087321 | None:intergenic |
| CATACCTCTTTCCAATAATG+AGG | 0.541220 | 7_1:+49087133 | None:intergenic |
| TCGGCGGCTCTTCAGCTACA+TGG | 0.555386 | 7_1:-49088980 | Msa1022580:CDS |
| TGGATGCTATTGAATAGTAG+TGG | 0.555641 | 7_1:+49089096 | None:intergenic |
| ATTACATCACTTAGACTATG+TGG | 0.555644 | 7_1:-49087599 | Msa1022580:CDS |
| GTGCTGCTAGTAAGCCATAT+GGG | 0.563052 | 7_1:+49087644 | None:intergenic |
| CCCTCCGCCGCCATAAGCCA+TGG | 0.563703 | 7_1:+49088584 | None:intergenic |
| ACATCATACAAATCGGATCC+GGG | 0.564580 | 7_1:-49087526 | Msa1022580:CDS |
| TATAAGCTACCCTTTGGCGG+CGG | 0.564991 | 7_1:-49088556 | Msa1022580:CDS |
| ACGGATCTTGACTAACGGGT+CGG | 0.569910 | 7_1:+49087326 | None:intergenic |
| GTTCAGATTACCAAAGAACC+TGG | 0.570984 | 7_1:-49088441 | Msa1022580:CDS |
| TACACAACCGGTTTCACACA+CGG | 0.573621 | 7_1:+49087307 | None:intergenic |
| GATCATTGGATTTGATGGTG+GGG | 0.574733 | 7_1:+49089216 | None:intergenic |
| CAACACCGTAACGAGGTTGT+CGG | 0.582802 | 7_1:+49088686 | None:intergenic |
| CCATGGCTTATGGCGGCGGA+GGG | 0.583286 | 7_1:-49088584 | Msa1022580:CDS |
| ATTGATGATAAGTATGAGAA+AGG | 0.586884 | 7_1:+49089126 | None:intergenic |
| CATCGTTTAAATACACATGT+TGG | 0.586906 | 7_1:-49088821 | Msa1022580:CDS |
| CAATAATGAGGCAAAAGCAT+AGG | 0.587166 | 7_1:+49087145 | None:intergenic |
| GGTTATAAAAGATATGATGA+TGG | 0.594197 | 7_1:-49087238 | Msa1022580:CDS |
| GTGATCAATGTCAAAATCAG+AGG | 0.606553 | 7_1:-49086336 | Msa1022580:CDS |
| AATTAGGGTTAGATAATGTG+AGG | 0.609265 | 7_1:-49088746 | Msa1022580:CDS |
| ATATGATGATGGTTCAGGGA+AGG | 0.617134 | 7_1:-49087227 | Msa1022580:CDS |
| AAATGTACCTGATGAAAACC+AGG | 0.619010 | 7_1:+49088423 | None:intergenic |
| AAAATGTGAGAGATATTGGT+CGG | 0.626298 | 7_1:+49089011 | None:intergenic |
| GAGGTTGTCGGGGAAGAAGA+CGG | 0.628561 | 7_1:+49088698 | None:intergenic |
| TTCAGGGAAGGAGTGTGACA+AGG | 0.630094 | 7_1:-49087215 | Msa1022580:CDS |
| GTCGCCACTATAGCGAACTC+TGG | 0.630700 | 7_1:-49088950 | Msa1022580:CDS |
| TAGGGTTAGATAATGTGAGG+TGG | 0.632426 | 7_1:-49088743 | Msa1022580:CDS |
| GTATTTAAACGATGACGTGT+TGG | 0.635519 | 7_1:+49088830 | None:intergenic |
| GAGACCTTCTCATCAAACCA+TGG | 0.635804 | 7_1:-49089253 | Msa1022580:CDS |
| CATACAAATCGGATCCGGGT+CGG | 0.636300 | 7_1:-49087522 | Msa1022580:CDS |
| TAGCCACACGAAGCCTCTGG+TGG | 0.644538 | 7_1:+49088914 | None:intergenic |
| ACACCGTAACGAGGTTGTCG+GGG | 0.648576 | 7_1:+49088688 | None:intergenic |
| AAGTGATGTAATGTGACCAA+TGG | 0.649500 | 7_1:+49087610 | None:intergenic |
| ATTTCGACAACACCGTAACG+AGG | 0.653291 | 7_1:+49088679 | None:intergenic |
| GCCACTATAGCGAACTCTGG+TGG | 0.653872 | 7_1:-49088947 | Msa1022580:CDS |
| TTTCCCAAACATTTAAAACG+TGG | 0.662282 | 7_1:-49087384 | Msa1022580:CDS |
| TGACAAGGTTGATTATAAGG+TGG | 0.676439 | 7_1:-49087200 | Msa1022580:CDS |
| TGGCGTCAAAACACCACCAG+AGG | 0.678981 | 7_1:-49088927 | Msa1022580:CDS |
| TTTGTTGTAAATTTCTAACG+AGG | 0.679187 | 7_1:+49086288 | None:intergenic |
| GATTGTTGGATAGTCCGACC+CGG | 0.683447 | 7_1:+49087508 | None:intergenic |
| ACACCACCAGAGGCTTCGTG+TGG | 0.687181 | 7_1:-49088917 | Msa1022580:CDS |
| TGGTCAATATCAATATCATG+GGG | 0.701871 | 7_1:-49087460 | Msa1022580:CDS |
| TCGGGTATTAAAAGTAAATG+GGG | 0.708683 | 7_1:+49087345 | None:intergenic |
| TTGGCAGAGACTTTATATGG+CGG | 0.715228 | 7_1:+49088849 | None:intergenic |
| TTAATGCAGGTAGATATACG+TGG | 0.808611 | 7_1:-49087670 | Msa1022580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTTACACATTAT+TGG | - | chr7_1:49087249-49087268 | Msa1022580:CDS | 10.0% |
| !! | AATAAATACGTAATAATTAA+TGG | + | chr7_1:49087356-49087375 | None:intergenic | 10.0% |
| !!! | AAATACTTTTTTTTGAATAA+AGG | + | chr7_1:49087482-49087501 | None:intergenic | 10.0% |
| !!! | AGTAAATATTTTTTTTTGAA+GGG | + | chr7_1:49087509-49087528 | None:intergenic | 10.0% |
| !!! | TTTATTTGATTTTCTTTTTT+TGG | + | chr7_1:49087663-49087682 | None:intergenic | 10.0% |
| !! | AATAAATAAATTAGCTAAAA+TGG | + | chr7_1:49087887-49087906 | None:intergenic | 10.0% |
| !! | ATTAACATAATAATTATATG+TGG | - | chr7_1:49088515-49088534 | Msa1022580:CDS | 10.0% |
| !! | TTAACATAATAATTATATGT+GGG | - | chr7_1:49088516-49088535 | Msa1022580:CDS | 10.0% |
| !!! | AGTTTTTAATTTAATTAATG+CGG | - | chr7_1:49088751-49088770 | Msa1022580:CDS | 10.0% |
| !!! | TTCTTTATTTTTATTACTAA+TGG | + | chr7_1:49088882-49088901 | None:intergenic | 10.0% |
| !!! | GAGTAAATATTTTTTTTTGA+AGG | + | chr7_1:49087510-49087529 | None:intergenic | 15.0% |
| !! | AAAATATATCATACCAATAA+AGG | + | chr7_1:49087699-49087718 | None:intergenic | 15.0% |
| !!! | ATATTTTTTGGAATGTAAAA+TGG | + | chr7_1:49087863-49087882 | None:intergenic | 15.0% |
| !!! | ATTTATTTATTGATTAATGC+AGG | - | chr7_1:49087900-49087919 | Msa1022580:intron | 15.0% |
| !! | TAAAGAAAAAAGAACAAATT+GGG | + | chr7_1:49088487-49088506 | None:intergenic | 15.0% |
| !! | ATAAAGAAAAAAGAACAAAT+TGG | + | chr7_1:49088488-49088507 | None:intergenic | 15.0% |
| !!! | TAATTTTTGGAAAATGATAA+AGG | + | chr7_1:49089134-49089153 | None:intergenic | 15.0% |
| !! | CATAATCAAATGTACTATAT+TGG | - | chr7_1:49086932-49086951 | Msa1022580:intron | 20.0% |
| !!! | TTTTTCTCTTGAATATTCAT+TGG | - | chr7_1:49087210-49087229 | Msa1022580:CDS | 20.0% |
| !!! | ACATCATGAATCAAATTTTT+CGG | - | chr7_1:49087280-49087299 | Msa1022580:CDS | 20.0% |
| !!! | TGGTTTTTTTTTTTTTGACA+AGG | - | chr7_1:49087565-49087584 | Msa1022580:CDS | 20.0% |
| !!! | AGCTAAAATGGAATATTTTT+TGG | + | chr7_1:49087875-49087894 | None:intergenic | 20.0% |
| !!! | ATCATCATATCTTTTATAAC+CGG | + | chr7_1:49088346-49088365 | None:intergenic | 20.0% |
| !!! | TAGTTGCTAATATTTCATTT+TGG | - | chr7_1:49088684-49088703 | Msa1022580:CDS | 20.0% |
| !!! | TTTAATTTAATTAATGCGGA+TGG | - | chr7_1:49088755-49088774 | Msa1022580:CDS | 20.0% |
| !!! | TACACTAATTTTCTCAAATT+AGG | + | chr7_1:49088815-49088834 | None:intergenic | 20.0% |
| !!! | CTTTTCTGATTTATCATTAA+AGG | + | chr7_1:49089010-49089029 | None:intergenic | 20.0% |
| !! | CTTTAATGATAAATCAGAAA+AGG | - | chr7_1:49089008-49089027 | Msa1022580:CDS | 20.0% |
| !!! | AAAAGGTAACTTTTGATTTA+TGG | - | chr7_1:49089025-49089044 | Msa1022580:CDS | 20.0% |
| !! | AGATTGAAATTTGGATTAAT+AGG | - | chr7_1:49089168-49089187 | Msa1022580:CDS | 20.0% |
| ! | ATGAGAAAGGTAGAAAAAAT+GGG | + | chr7_1:49086447-49086466 | None:intergenic | 25.0% |
| ! | TATGAGAAAGGTAGAAAAAA+TGG | + | chr7_1:49086448-49086467 | None:intergenic | 25.0% |
| !! | ATTGATGATAAGTATGAGAA+AGG | + | chr7_1:49086460-49086479 | None:intergenic | 25.0% |
| ! | AAACAAAATGTGAGAGATAT+TGG | + | chr7_1:49086579-49086598 | None:intergenic | 25.0% |
| !! | AATATCTCTCACATTTTGTT+TGG | - | chr7_1:49086578-49086597 | Msa1022580:intron | 25.0% |
| ! | TTTAAATACACATGTTGGTA+CGG | - | chr7_1:49086767-49086786 | Msa1022580:intron | 25.0% |
| !!! | TGAAAGAGAGTTTTGAATTA+GGG | - | chr7_1:49086822-49086841 | Msa1022580:intron | 25.0% |
| ! | AATCAAATGTACTATATTGG+TGG | - | chr7_1:49086935-49086954 | Msa1022580:intron | 25.0% |
| ! | ATCGATTGAATTCTCTATAA+AGG | - | chr7_1:49087316-49087335 | Msa1022580:CDS | 25.0% |
| ! | TCGATTGAATTCTCTATAAA+GGG | - | chr7_1:49087317-49087336 | Msa1022580:CDS | 25.0% |
| ! | AAGGATAGTAAATACTTGAA+CGG | + | chr7_1:49087463-49087482 | None:intergenic | 25.0% |
| ! | ATCGTCGAAAACTAAAAATA+AGG | + | chr7_1:49087537-49087556 | None:intergenic | 25.0% |
| !! | TTTGACAAGGATATCTTTTA+TGG | - | chr7_1:49087578-49087597 | Msa1022580:CDS | 25.0% |
| ! | TTAAAGAACAGTTCCTTTAT+TGG | - | chr7_1:49087683-49087702 | Msa1022580:intron | 25.0% |
| !! | TCTAACTACCATTTTAGATT+CGG | - | chr7_1:49087747-49087766 | Msa1022580:intron | 25.0% |
| !!! | TATTTTGACCGAATCTAAAA+TGG | + | chr7_1:49087758-49087777 | None:intergenic | 25.0% |
| ! | TCAAAATAAAACTACCAGTT+TGG | - | chr7_1:49087770-49087789 | Msa1022580:intron | 25.0% |
| !!! | ATATTGACCAATTTTTTGAG+TGG | + | chr7_1:49088113-49088132 | None:intergenic | 25.0% |
| ! | ATTGGTCAATATCAATATCA+TGG | - | chr7_1:49088121-49088140 | Msa1022580:intron | 25.0% |
| ! | TTGGTCAATATCAATATCAT+GGG | - | chr7_1:49088122-49088141 | Msa1022580:intron | 25.0% |
| ! | GGTTATAAAAGATATGATGA+TGG | - | chr7_1:49088345-49088364 | Msa1022580:intron | 25.0% |
| !!! | TAAACGTATGGTCTTTATTT+TGG | - | chr7_1:49088604-49088623 | Msa1022580:CDS | 25.0% |
| ! | ACTAAATTATCATGTTCAAG+AGG | + | chr7_1:49088668-49088687 | None:intergenic | 25.0% |
| ! | AAATGTTAATGAGTGTTCTA+AGG | - | chr7_1:49088949-49088968 | Msa1022580:CDS | 25.0% |
| ! | GTTGTCAAACTTACTATTTA+TGG | + | chr7_1:49088988-49089007 | None:intergenic | 25.0% |
| !!! | TAACTTTTGATTTATGGTCT+AGG | - | chr7_1:49089031-49089050 | Msa1022580:CDS | 25.0% |
| !!! | AACTTTTGATTTATGGTCTA+GGG | - | chr7_1:49089032-49089051 | Msa1022580:CDS | 25.0% |
| !! | GTTAGGCACTAATTAATTTT+TGG | + | chr7_1:49089147-49089166 | None:intergenic | 25.0% |
| ! | ATCCAAATTTCAATCTAGTT+AGG | + | chr7_1:49089164-49089183 | None:intergenic | 25.0% |
| ! | GATTCTATGATTAGGGTTTT+TGG | + | chr7_1:49086536-49086555 | None:intergenic | 30.0% |
| AAAATGTGAGAGATATTGGT+CGG | + | chr7_1:49086575-49086594 | None:intergenic | 30.0% | |
| !! | TCTCACATTTTGTTTGGAAT+CGG | - | chr7_1:49086584-49086603 | Msa1022580:intron | 30.0% |
| CATCGTTTAAATACACATGT+TGG | - | chr7_1:49086762-49086781 | Msa1022580:intron | 30.0% | |
| !!! | GTGAAAGAGAGTTTTGAATT+AGG | - | chr7_1:49086821-49086840 | Msa1022580:intron | 30.0% |
| AATTAGGGTTAGATAATGTG+AGG | - | chr7_1:49086837-49086856 | Msa1022580:intron | 30.0% | |
| ! | TGTTGTACATTTTTACACCA+TGG | - | chr7_1:49086982-49087001 | Msa1022580:intron | 30.0% |
| GATCGTTATTCTGAGTATTA+TGG | - | chr7_1:49087079-49087098 | Msa1022580:intron | 30.0% | |
| CAAAGTTGCATTAGTGAAAT+TGG | - | chr7_1:49087118-49087137 | Msa1022580:intron | 30.0% | |
| ! | GTTTTCGACGATATCTTTTA+TGG | - | chr7_1:49087545-49087564 | Msa1022580:CDS | 30.0% |
| TTAGATCAAGTAATCCAAAC+TGG | + | chr7_1:49087787-49087806 | None:intergenic | 30.0% | |
| ATTACATCACTTAGACTATG+TGG | - | chr7_1:49087984-49088003 | Msa1022580:intron | 30.0% | |
| GCTAGTAACATCATACAAAT+CGG | - | chr7_1:49088050-49088069 | Msa1022580:intron | 30.0% | |
| TGGTCAATATCAATATCATG+GGG | - | chr7_1:49088123-49088142 | Msa1022580:intron | 30.0% | |
| TCTTTAGCTGTTGCTAAATA+GGG | + | chr7_1:49088168-49088187 | None:intergenic | 30.0% | |
| ! | TTTCCCAAACATTTAAAACG+TGG | - | chr7_1:49088199-49088218 | Msa1022580:intron | 30.0% |
| !! | CTTCCACGTTTTAAATGTTT+GGG | + | chr7_1:49088205-49088224 | None:intergenic | 30.0% |
| !! | TCTTCCACGTTTTAAATGTT+TGG | + | chr7_1:49088206-49088225 | None:intergenic | 30.0% |
| TCGGGTATTAAAAGTAAATG+GGG | + | chr7_1:49088241-49088260 | None:intergenic | 30.0% | |
| GTCGGGTATTAAAAGTAAAT+GGG | + | chr7_1:49088242-49088261 | None:intergenic | 30.0% | |
| ! | TATTTTATGGATCGGATTGA+GGG | - | chr7_1:49088297-49088316 | Msa1022580:intron | 30.0% |
| !! | AAAAGATATGATGATGGTTC+AGG | - | chr7_1:49088351-49088370 | Msa1022580:intron | 30.0% |
| !! | AAAGATATGATGATGGTTCA+GGG | - | chr7_1:49088352-49088371 | Msa1022580:intron | 30.0% |
| GATTCAAACTCTATCATTTG+AGG | - | chr7_1:49088538-49088557 | Msa1022580:CDS | 30.0% | |
| ! | AAAATGTTGATAAGTGTCCT+CGG | - | chr7_1:49088900-49088919 | Msa1022580:CDS | 30.0% |
| TGCCTAACTAGATTGAAATT+TGG | - | chr7_1:49089159-49089178 | Msa1022580:CDS | 30.0% | |
| GAGATAATCAACAATGTAGA+TGG | - | chr7_1:49089211-49089230 | Msa1022580:CDS | 30.0% | |
| ! | TTTTCCATGGTTTGATGAGA+AGG | + | chr7_1:49086337-49086356 | None:intergenic | 35.0% |
| ! | AGATCATTGGATTTGATGGT+GGG | + | chr7_1:49086371-49086390 | None:intergenic | 35.0% |
| GAAGAGATCATTGGATTTGA+TGG | + | chr7_1:49086375-49086394 | None:intergenic | 35.0% | |
| GGATGCTATTGAATAGTAGT+GGG | + | chr7_1:49086489-49086508 | None:intergenic | 35.0% | |
| TGGATGCTATTGAATAGTAG+TGG | + | chr7_1:49086490-49086509 | None:intergenic | 35.0% | |
| TTCGGCAGATTCTATGATTA+GGG | + | chr7_1:49086543-49086562 | None:intergenic | 35.0% | |
| GTATTTAAACGATGACGTGT+TGG | + | chr7_1:49086756-49086775 | None:intergenic | 35.0% | |
| ! | TAATGTGAGGTGGTTTGTAA+TGG | - | chr7_1:49086850-49086869 | Msa1022580:intron | 35.0% |
| ! | AATGTGAGGTGGTTTGTAAT+GGG | - | chr7_1:49086851-49086870 | Msa1022580:intron | 35.0% |
| ! | CATTTTTACACCATGGCTTA+TGG | - | chr7_1:49086989-49087008 | Msa1022580:intron | 35.0% |
| AAATGTACCTGATGAAAACC+AGG | + | chr7_1:49087163-49087182 | None:intergenic | 35.0% | |
| TTAATGCAGGTAGATATACG+TGG | - | chr7_1:49087913-49087932 | Msa1022580:intron | 35.0% | |
| AAGTGATGTAATGTGACCAA+TGG | + | chr7_1:49087976-49087995 | None:intergenic | 35.0% | |
| AACATCATACAAATCGGATC+CGG | - | chr7_1:49088056-49088075 | Msa1022580:intron | 35.0% | |
| GGTCATAGCAAAATGATTGT+TGG | + | chr7_1:49088092-49088111 | None:intergenic | 35.0% | |
| GCTATGACCACTCAAAAAAT+TGG | - | chr7_1:49088103-49088122 | Msa1022580:intron | 35.0% | |
| CTCTTTAGCTGTTGCTAAAT+AGG | + | chr7_1:49088169-49088188 | None:intergenic | 35.0% | |
| AACAGCTAAAGAGCTTGAAA+TGG | - | chr7_1:49088176-49088195 | Msa1022580:intron | 35.0% | |
| ! | CATTTAAAACGTGGAAGACT+TGG | - | chr7_1:49088208-49088227 | Msa1022580:intron | 35.0% |
| GGTCGGGTATTAAAAGTAAA+TGG | + | chr7_1:49088243-49088262 | None:intergenic | 35.0% | |
| ! | GAAACCGGTTGTGTATTTTA+TGG | - | chr7_1:49088284-49088303 | Msa1022580:intron | 35.0% |
| CGATCCATAAAATACACAAC+CGG | + | chr7_1:49088291-49088310 | None:intergenic | 35.0% | |
| ! | CGGTTGTGTATTTTATGGAT+CGG | - | chr7_1:49088289-49088308 | Msa1022580:intron | 35.0% |
| ! | GTATTTTATGGATCGGATTG+AGG | - | chr7_1:49088296-49088315 | Msa1022580:intron | 35.0% |
| ! | ATATCTTTTATAACCGGACC+GGG | + | chr7_1:49088340-49088359 | None:intergenic | 35.0% |
| ! | CATATCTTTTATAACCGGAC+CGG | + | chr7_1:49088341-49088360 | None:intergenic | 35.0% |
| ! | GTGTGACAAGGTTGATTATA+AGG | - | chr7_1:49088380-49088399 | Msa1022580:intron | 35.0% |
| ! | TGACAAGGTTGATTATAAGG+TGG | - | chr7_1:49088383-49088402 | Msa1022580:intron | 35.0% |
| ! | CAATAATGAGGCAAAAGCAT+AGG | + | chr7_1:49088441-49088460 | None:intergenic | 35.0% |
| ! | CTATGCTTTTGCCTCATTAT+TGG | - | chr7_1:49088439-49088458 | Msa1022580:CDS | 35.0% |
| TTTGCCTCATTATTGGAAAG+AGG | - | chr7_1:49088446-49088465 | Msa1022580:CDS | 35.0% | |
| CATACCTCTTTCCAATAATG+AGG | + | chr7_1:49088453-49088472 | None:intergenic | 35.0% | |
| TGTGTTTAGTGTCAGTTAAG+CGG | + | chr7_1:49088583-49088602 | None:intergenic | 35.0% | |
| CACTAAACACACTAAACGTA+TGG | - | chr7_1:49088592-49088611 | Msa1022580:CDS | 35.0% | |
| ! | TTGGTTATCAAGTTGTTGCT+TGG | - | chr7_1:49088703-49088722 | Msa1022580:CDS | 35.0% |
| ! | TGGTTATCAAGTTGTTGCTT+GGG | - | chr7_1:49088704-49088723 | Msa1022580:CDS | 35.0% |
| GTGATCAATGTCAAAATCAG+AGG | - | chr7_1:49089247-49089266 | Msa1022580:CDS | 35.0% | |
| !! | GATCATTGGATTTGATGGTG+GGG | + | chr7_1:49086370-49086389 | None:intergenic | 40.0% |
| GAGATCATTGGATTTGATGG+TGG | + | chr7_1:49086372-49086391 | None:intergenic | 40.0% | |
| GAAGAGAGAGAAGAGATCAT+TGG | + | chr7_1:49086384-49086403 | None:intergenic | 40.0% | |
| TTCTCTCTCTTCCTCAAAGT+GGG | - | chr7_1:49086392-49086411 | Msa1022580:CDS | 40.0% | |
| AAATTGCTAGACCCACTTTG+AGG | + | chr7_1:49086406-49086425 | None:intergenic | 40.0% | |
| ATGGGAGATGAGAAAGATTG+TGG | + | chr7_1:49086429-49086448 | None:intergenic | 40.0% | |
| !!! | TGATTAGGGTTTTTGGAGTG+CGG | + | chr7_1:49086529-49086548 | None:intergenic | 40.0% |
| CTTCGGCAGATTCTATGATT+AGG | + | chr7_1:49086544-49086563 | None:intergenic | 40.0% | |
| !! | CACATTTTGTTTGGAATCGG+CGG | - | chr7_1:49086587-49086606 | Msa1022580:intron | 40.0% |
| TTGGCAGAGACTTTATATGG+CGG | + | chr7_1:49086737-49086756 | None:intergenic | 40.0% | |
| ! | GTGTTGGCAGAGACTTTATA+TGG | + | chr7_1:49086740-49086759 | None:intergenic | 40.0% |
| TAGGGTTAGATAATGTGAGG+TGG | - | chr7_1:49086840-49086859 | Msa1022580:intron | 40.0% | |
| ! | TTTTACACCATGGCTTATGG+CGG | - | chr7_1:49086992-49087011 | Msa1022580:intron | 40.0% |
| !! | GTTTGCTATAAGCTACCCTT+TGG | - | chr7_1:49087021-49087040 | Msa1022580:intron | 40.0% |
| ! | GAGCTTGTGAAGATTTTGGA+CGG | - | chr7_1:49087049-49087068 | Msa1022580:intron | 40.0% |
| GTTCAGATTACCAAAGAACC+TGG | - | chr7_1:49087142-49087161 | Msa1022580:CDS | 40.0% | |
| CTGATGAAAACCAGGTTCTT+TGG | + | chr7_1:49087155-49087174 | None:intergenic | 40.0% | |
| !! | CAAAGAACCTGGTTTTCATC+AGG | - | chr7_1:49087153-49087172 | Msa1022580:CDS | 40.0% |
| GATATACGTGGTAACCCATA+TGG | - | chr7_1:49087925-49087944 | Msa1022580:intron | 40.0% | |
| ! | GGAACCAATTTTCCCAAACA+TGG | - | chr7_1:49088005-49088024 | Msa1022580:intron | 40.0% |
| CGTTCCATGTTTGGGAAAAT+TGG | + | chr7_1:49088012-49088031 | None:intergenic | 40.0% | |
| CATCAACACGTTCCATGTTT+GGG | + | chr7_1:49088020-49088039 | None:intergenic | 40.0% | |
| ACATCATACAAATCGGATCC+GGG | - | chr7_1:49088057-49088076 | Msa1022580:intron | 40.0% | |
| !! | ATATGATGATGGTTCAGGGA+AGG | - | chr7_1:49088356-49088375 | Msa1022580:intron | 40.0% |
| GTTGATTATAAGGTGGCTCA+TGG | - | chr7_1:49088390-49088409 | Msa1022580:intron | 40.0% | |
| !! | ATGTTCAAGAGGTGTCACTT+GGG | + | chr7_1:49088657-49088676 | None:intergenic | 40.0% |
| ! | TTATCAAGTTGTTGCTTGGG+TGG | - | chr7_1:49088707-49088726 | Msa1022580:CDS | 40.0% |
| GAGAAGTCAAAACACTGTCT+AGG | + | chr7_1:49089075-49089094 | None:intergenic | 40.0% | |
| GAGACCTTCTCATCAAACCA+TGG | - | chr7_1:49086330-49086349 | Msa1022580:CDS | 45.0% | |
| ! | GGGAAGGGAAATGTTTTCCA+TGG | + | chr7_1:49086350-49086369 | None:intergenic | 45.0% |
| !! | TTGGATTTGATGGTGGGGAA+GGG | + | chr7_1:49086365-49086384 | None:intergenic | 45.0% |
| !! | ATTGGATTTGATGGTGGGGA+AGG | + | chr7_1:49086366-49086385 | None:intergenic | 45.0% |
| CTTCTCTCTCTTCCTCAAAG+TGG | - | chr7_1:49086391-49086410 | Msa1022580:CDS | 45.0% | |
| ! | GCGGGTTTGGAACATTTGTT+TGG | + | chr7_1:49086510-49086529 | None:intergenic | 45.0% |
| !!! | GATTAGGGTTTTTGGAGTGC+GGG | + | chr7_1:49086528-49086547 | None:intergenic | 45.0% |
| ! | AGAGATATTGGTCGGCTCTT+CGG | + | chr7_1:49086567-49086586 | None:intergenic | 45.0% |
| AGCCGTTTAAAAACGAGACG+TGG | - | chr7_1:49086699-49086718 | Msa1022580:intron | 45.0% | |
| !! | GGCCACGTCTCGTTTTTAAA+CGG | + | chr7_1:49086704-49086723 | None:intergenic | 45.0% |
| ATTTCGACAACACCGTAACG+AGG | + | chr7_1:49086907-49086926 | None:intergenic | 45.0% | |
| TGCTATAAGCTACCCTTTGG+CGG | - | chr7_1:49087024-49087043 | Msa1022580:intron | 45.0% | |
| ! | GTGCTGCTAGTAAGCCATAT+GGG | + | chr7_1:49087942-49087961 | None:intergenic | 45.0% |
| ! | TGTGCTGCTAGTAAGCCATA+TGG | + | chr7_1:49087943-49087962 | None:intergenic | 45.0% |
| AATGTGACCAATGGTGCAAC+TGG | + | chr7_1:49087967-49087986 | None:intergenic | 45.0% | |
| GCATCAACACGTTCCATGTT+TGG | + | chr7_1:49088021-49088040 | None:intergenic | 45.0% | |
| ACACACGGATCTTGACTAAC+GGG | + | chr7_1:49088264-49088283 | None:intergenic | 45.0% | |
| CACACACGGATCTTGACTAA+CGG | + | chr7_1:49088265-49088284 | None:intergenic | 45.0% | |
| TCAAGATCCGTGTGTGAAAC+CGG | - | chr7_1:49088269-49088288 | Msa1022580:intron | 45.0% | |
| ! | TACACAACCGGTTTCACACA+CGG | + | chr7_1:49088279-49088298 | None:intergenic | 45.0% |
| ! | ATGGATCGGATTGAGGGTTT+TGG | - | chr7_1:49088303-49088322 | Msa1022580:intron | 45.0% |
| !! | ATCGGATTGAGGGTTTTGGT+CGG | - | chr7_1:49088307-49088326 | Msa1022580:intron | 45.0% |
| !! | CATGTTCAAGAGGTGTCACT+TGG | + | chr7_1:49088658-49088677 | None:intergenic | 45.0% |
| ! | ATGTTGATAAGTGTCCTCGG+TGG | - | chr7_1:49088903-49088922 | Msa1022580:CDS | 45.0% |
| AAACAATGTTCAAGCCACCG+AGG | + | chr7_1:49088920-49088939 | None:intergenic | 45.0% | |
| ATCTCGCAGCATTGTCTTCT+TGG | + | chr7_1:49089196-49089215 | None:intergenic | 45.0% | |
| !!! | AAAACTTAATTTTAAATTAT+AGG | + | chr7_1:49088737-49088756 | None:intergenic | 5.0% |
| TTATATGGCGGTGACGTCTC+TGG | + | chr7_1:49086725-49086744 | None:intergenic | 50.0% | |
| AACACCGTAACGAGGTTGTC+GGG | + | chr7_1:49086899-49086918 | None:intergenic | 50.0% | |
| CAACACCGTAACGAGGTTGT+CGG | + | chr7_1:49086900-49086919 | None:intergenic | 50.0% | |
| TATAAGCTACCCTTTGGCGG+CGG | - | chr7_1:49087027-49087046 | Msa1022580:intron | 50.0% | |
| ! | GGCGGAGCTTGTGAAGATTT+TGG | - | chr7_1:49087045-49087064 | Msa1022580:intron | 50.0% |
| AGCACATCCAGTTGCACCAT+TGG | - | chr7_1:49087957-49087976 | Msa1022580:intron | 50.0% | |
| CATACAAATCGGATCCGGGT+CGG | - | chr7_1:49088061-49088080 | Msa1022580:intron | 50.0% | |
| GATTGTTGGATAGTCCGACC+CGG | + | chr7_1:49088078-49088097 | None:intergenic | 50.0% | |
| ! | ACGGATCTTGACTAACGGGT+CGG | + | chr7_1:49088260-49088279 | None:intergenic | 50.0% |
| !! | TCGGATTGAGGGTTTTGGTC+GGG | - | chr7_1:49088308-49088327 | Msa1022580:intron | 50.0% |
| ! | TTCAGGGAAGGAGTGTGACA+AGG | - | chr7_1:49088368-49088387 | Msa1022580:intron | 50.0% |
| !! | TTCAAGAGGTGTCACTTGGG+TGG | + | chr7_1:49088654-49088673 | None:intergenic | 50.0% |
| !!! | GGGTTTTTGGAGTGCGGGTT+TGG | + | chr7_1:49086523-49086542 | None:intergenic | 55.0% |
| ! | ATTGGTCGGCTCTTCGGCTT+CGG | + | chr7_1:49086561-49086580 | None:intergenic | 55.0% |
| GTCGCCACTATAGCGAACTC+TGG | - | chr7_1:49086633-49086652 | Msa1022580:intron | 55.0% | |
| GCCACTATAGCGAACTCTGG+TGG | - | chr7_1:49086636-49086655 | Msa1022580:intron | 55.0% | |
| GCCACCAGAGTTCGCTATAG+TGG | + | chr7_1:49086640-49086659 | None:intergenic | 55.0% | |
| TGGCGTCAAAACACCACCAG+AGG | - | chr7_1:49086656-49086675 | Msa1022580:intron | 55.0% | |
| GAGGTTGTCGGGGAAGAAGA+CGG | + | chr7_1:49086888-49086907 | None:intergenic | 55.0% | |
| CTTCCCCGACAACCTCGTTA+CGG | - | chr7_1:49086892-49086911 | Msa1022580:intron | 55.0% | |
| ACACCGTAACGAGGTTGTCG+GGG | + | chr7_1:49086898-49086917 | None:intergenic | 55.0% | |
| TACACCATGGCTTATGGCGG+CGG | - | chr7_1:49086995-49087014 | Msa1022580:intron | 55.0% | |
| ! | CGGATCTTGACTAACGGGTC+GGG | + | chr7_1:49088259-49088278 | None:intergenic | 55.0% |
| !! | CGGATTGAGGGTTTTGGTCG+GGG | - | chr7_1:49088309-49088328 | Msa1022580:intron | 55.0% |
| !! | GTTTTGGTCGGGGATTGACC+CGG | - | chr7_1:49088319-49088338 | Msa1022580:intron | 55.0% |
| TCGGCGGCTCTTCAGCTACA+TGG | - | chr7_1:49086603-49086622 | Msa1022580:intron | 60.0% | |
| ACACCACCAGAGGCTTCGTG+TGG | - | chr7_1:49086666-49086685 | Msa1022580:intron | 60.0% | |
| TAGCCACACGAAGCCTCTGG+TGG | + | chr7_1:49086672-49086691 | None:intergenic | 60.0% | |
| GTCTAGCCACACGAAGCCTC+TGG | + | chr7_1:49086675-49086694 | None:intergenic | 60.0% | |
| TCACAAGCTCCGCCGCCAAA+GGG | + | chr7_1:49087039-49087058 | None:intergenic | 60.0% | |
| TTCACAAGCTCCGCCGCCAA+AGG | + | chr7_1:49087040-49087059 | None:intergenic | 60.0% | |
| ACCATGGCTTATGGCGGCGG+AGG | - | chr7_1:49086998-49087017 | Msa1022580:intron | 65.0% | |
| CCATGGCTTATGGCGGCGGA+GGG | - | chr7_1:49086999-49087018 | Msa1022580:intron | 65.0% | |
| CCCTCCGCCGCCATAAGCCA+TGG | + | chr7_1:49087002-49087021 | None:intergenic | 70.0% | |
| GGTCGGGGATTGACCCGGTC+CGG | - | chr7_1:49088324-49088343 | Msa1022580:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 49086302 | 49089303 | 49086302 | ID=Msa1022580;Name=Msa1022580 |
| chr7_1 | mRNA | 49086302 | 49089303 | 49086302 | ID=Msa1022580-mRNA-1;Parent=Msa1022580;Name=Msa1022580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|3|0|510 |
| chr7_1 | exon | 49088431 | 49089303 | 49088431 | ID=Msa1022580-mRNA-1:exon:9603;Parent=Msa1022580-mRNA-1 |
| chr7_1 | exon | 49087138 | 49087683 | 49087138 | ID=Msa1022580-mRNA-1:exon:9602;Parent=Msa1022580-mRNA-1 |
| chr7_1 | exon | 49086302 | 49086415 | 49086302 | ID=Msa1022580-mRNA-1:exon:9601;Parent=Msa1022580-mRNA-1 |
| chr7_1 | CDS | 49088431 | 49089303 | 49088431 | ID=Msa1022580-mRNA-1:cds;Parent=Msa1022580-mRNA-1 |
| chr7_1 | CDS | 49087138 | 49087683 | 49087138 | ID=Msa1022580-mRNA-1:cds;Parent=Msa1022580-mRNA-1 |
| chr7_1 | CDS | 49086302 | 49086415 | 49086302 | ID=Msa1022580-mRNA-1:cds;Parent=Msa1022580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
