Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467300 | XP_024635521.1 | 94.177 | 395 | 14 | 2 | 1 | 386 | 1 | 395 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467300 | A0A396IUB9 | 94.177 | 395 | 14 | 2 | 1 | 386 | 1 | 395 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa0467300 | 0.842761 | 2.122297e-58 | -8.615850e-47 |
| Msa0017510 | Msa0467300 | 0.811840 | 5.724992e-51 | -8.615850e-47 |
| Msa0018250 | Msa0467300 | 0.815560 | 8.683153e-52 | -8.615850e-47 |
| Msa0032840 | Msa0467300 | -0.800363 | 1.492853e-48 | -8.615850e-47 |
| Msa0036850 | Msa0467300 | 0.824535 | 7.657849e-54 | -8.615850e-47 |
| Msa0044020 | Msa0467300 | 0.804836 | 1.783775e-49 | -8.615850e-47 |
| Msa0046100 | Msa0467300 | 0.806909 | 6.542411e-50 | -8.615850e-47 |
| Msa0052080 | Msa0467300 | 0.803465 | 3.441862e-49 | -8.615850e-47 |
| Msa0081360 | Msa0467300 | 0.801716 | 7.895493e-49 | -8.615850e-47 |
| Msa0081480 | Msa0467300 | 0.807586 | 4.701919e-50 | -8.615850e-47 |
| Msa0090590 | Msa0467300 | 0.826770 | 2.261095e-54 | -8.615850e-47 |
| Msa0094120 | Msa0467300 | 0.818232 | 2.182134e-52 | -8.615850e-47 |
| Msa0094140 | Msa0467300 | 0.817335 | 3.478718e-52 | -8.615850e-47 |
| Msa0110970 | Msa0467300 | 0.845650 | 3.558137e-59 | -8.615850e-47 |
| Msa0115160 | Msa0467300 | 0.828932 | 6.827582e-55 | -8.615850e-47 |
| Msa0118570 | Msa0467300 | 0.800589 | 1.342828e-48 | -8.615850e-47 |
| Msa0124340 | Msa0467300 | 0.805136 | 1.544210e-49 | -8.615850e-47 |
| Msa0157290 | Msa0467300 | 0.811734 | 6.037766e-51 | -8.615850e-47 |
| Msa0183830 | Msa0467300 | 0.823903 | 1.078063e-53 | -8.615850e-47 |
| Msa0186890 | Msa0467300 | 0.814950 | 1.186542e-51 | -8.615850e-47 |
| Msa0223250 | Msa0467300 | 0.805255 | 1.457983e-49 | -8.615850e-47 |
| Msa0225740 | Msa0467300 | 0.825330 | 4.971729e-54 | -8.615850e-47 |
| Msa0225760 | Msa0467300 | 0.824869 | 6.388384e-54 | -8.615850e-47 |
| Msa0371110 | Msa0467300 | 0.803792 | 2.944062e-49 | -8.615850e-47 |
| Msa0413720 | Msa0467300 | 0.809615 | 1.734025e-50 | -8.615850e-47 |
| Msa0417880 | Msa0467300 | 0.822933 | 1.817279e-53 | -8.615850e-47 |
| Msa0422850 | Msa0467300 | 0.827197 | 1.786870e-54 | -8.615850e-47 |
| Msa0422930 | Msa0467300 | 0.824754 | 6.801525e-54 | -8.615850e-47 |
| Msa0436050 | Msa0467300 | 0.804136 | 2.497118e-49 | -8.615850e-47 |
| Msa0457470 | Msa0467300 | 0.811151 | 8.079715e-51 | -8.615850e-47 |
| Msa0467300 | Msa0475790 | 0.813167 | 2.935262e-51 | -8.615850e-47 |
| Msa0467300 | Msa0505370 | 0.808651 | 2.789266e-50 | -8.615850e-47 |
| Msa0467300 | Msa0521880 | 0.802908 | 4.486470e-49 | -8.615850e-47 |
| Msa0467300 | Msa0541860 | 0.817003 | 4.129934e-52 | -8.615850e-47 |
| Msa0467300 | Msa0569200 | 0.816583 | 5.130906e-52 | -8.615850e-47 |
| Msa0467300 | Msa0574890 | 0.820661 | 6.094809e-53 | -8.615850e-47 |
| Msa0467300 | Msa0576690 | 0.800103 | 1.686000e-48 | -8.615850e-47 |
| Msa0467300 | Msa0609450 | 0.810232 | 1.276643e-50 | -8.615850e-47 |
| Msa0467300 | Msa0618040 | 0.802845 | 4.623015e-49 | -8.615850e-47 |
| Msa0467300 | Msa0620990 | 0.824430 | 8.107898e-54 | -8.615850e-47 |
| Msa0467300 | Msa0647130 | 0.800907 | 1.156459e-48 | -8.615850e-47 |
| Msa0467300 | Msa0650020 | 0.836631 | 8.355863e-57 | -8.615850e-47 |
| Msa0467300 | Msa0650090 | 0.813604 | 2.353561e-51 | -8.615850e-47 |
| Msa0467300 | Msa0683510 | 0.810155 | 1.326941e-50 | -8.615850e-47 |
| Msa0467300 | Msa0683570 | 0.821025 | 5.028621e-53 | -8.615850e-47 |
| Msa0467300 | Msa0691980 | 0.836182 | 1.087250e-56 | -8.615850e-47 |
| Msa0467300 | Msa0692080 | 0.808378 | 3.190228e-50 | -8.615850e-47 |
| Msa0467300 | Msa0701280 | 0.821416 | 4.084516e-53 | -8.615850e-47 |
| Msa0467300 | Msa0703230 | 0.817199 | 3.731747e-52 | -8.615850e-47 |
| Msa0467300 | Msa0718550 | 0.801189 | 1.012654e-48 | -8.615850e-47 |
| Msa0467300 | Msa0722810 | 0.800328 | 1.517514e-48 | -8.615850e-47 |
| Msa0467300 | Msa0722960 | 0.807775 | 4.287411e-50 | -8.615850e-47 |
| Msa0467300 | Msa0754520 | 0.819017 | 1.448220e-52 | -8.615850e-47 |
| Msa0467300 | Msa0760380 | 0.808947 | 2.411469e-50 | -8.615850e-47 |
| Msa0467300 | Msa0763830 | 0.824550 | 7.597065e-54 | -8.615850e-47 |
| Msa0467300 | Msa0825020 | 0.816081 | 6.646185e-52 | -8.615850e-47 |
| Msa0467300 | Msa0833220 | 0.820144 | 8.009187e-53 | -8.615850e-47 |
| Msa0467300 | Msa0850960 | 0.820152 | 7.978568e-53 | -8.615850e-47 |
| Msa0467300 | Msa0869780 | 0.804922 | 1.712015e-49 | -8.615850e-47 |
| Msa0467300 | Msa0880140 | 0.813067 | 3.088224e-51 | -8.615850e-47 |
| Msa0467300 | Msa0930780 | 0.820650 | 6.130378e-53 | -8.615850e-47 |
| Msa0467300 | Msa1003030 | 0.801177 | 1.018126e-48 | -8.615850e-47 |
| Msa0467300 | Msa1012700 | 0.804960 | 1.680461e-49 | -8.615850e-47 |
| Msa0467300 | Msa1066490 | 0.816664 | 4.922662e-52 | -8.615850e-47 |
| Msa0467300 | Msa1091520 | 0.800316 | 1.525937e-48 | -8.615850e-47 |
| Msa0467300 | Msa1097640 | 0.828500 | 8.686389e-55 | -8.615850e-47 |
| Msa0467300 | Msa1124110 | 0.808201 | 3.479764e-50 | -8.615850e-47 |
| Msa0467300 | Msa1139810 | 0.827436 | 1.566298e-54 | -8.615850e-47 |
| Msa0467300 | Msa1157870 | 0.808316 | 3.289024e-50 | -8.615850e-47 |
| Msa0467300 | Msa1168950 | 0.811452 | 6.952155e-51 | -8.615850e-47 |
| Msa0467300 | Msa1169040 | 0.806756 | 7.046978e-50 | -8.615850e-47 |
| Msa0467300 | Msa1200370 | 0.830895 | 2.269628e-55 | -8.615850e-47 |
| Msa0467300 | Msa1209460 | 0.815362 | 9.611381e-52 | -8.615850e-47 |
| Msa0467300 | Msa1226620 | 0.827467 | 1.539467e-54 | -8.615850e-47 |
| Msa0467300 | Msa1232710 | 0.830322 | 3.135573e-55 | -8.615850e-47 |
| Msa0467300 | Msa1236100 | 0.828041 | 1.120492e-54 | -8.615850e-47 |
| Msa0467300 | Msa1252190 | 0.809059 | 2.281708e-50 | -8.615850e-47 |
| Msa0467300 | Msa1253310 | 0.836371 | 9.733103e-57 | -8.615850e-47 |
| Msa0467300 | Msa1256340 | 0.801300 | 9.607834e-49 | -8.615850e-47 |
| Msa0467300 | Msa1292830 | 0.806000 | 1.017079e-49 | -8.615850e-47 |
| Msa0467300 | Msa1313300 | 0.828396 | 9.202523e-55 | -8.615850e-47 |
| Msa0467300 | Msa1370010 | 0.825292 | 5.074911e-54 | -8.615850e-47 |
| Msa0467300 | Msa1430690 | 0.800470 | 1.419929e-48 | -8.615850e-47 |
| Msa0467300 | Msa1432950 | 0.823415 | 1.402029e-53 | -8.615850e-47 |
| Msa0467300 | Msa1453740 | 0.815883 | 7.358136e-52 | -8.615850e-47 |
| Msa0467300 | Msa1458410 | 0.804204 | 2.417198e-49 | -8.615850e-47 |
| Msa0467300 | Msa1459380 | 0.844435 | 7.573666e-59 | -8.615850e-47 |
| Msa0260610 | Msa0467300 | 0.818202 | 2.217041e-52 | -8.615850e-47 |
| Msa0260670 | Msa0467300 | 0.809482 | 1.851267e-50 | -8.615850e-47 |
| Msa0261340 | Msa0467300 | 0.800578 | 1.349637e-48 | -8.615850e-47 |
| Msa0264870 | Msa0467300 | 0.813751 | 2.184736e-51 | -8.615850e-47 |
| Msa0277180 | Msa0467300 | 0.812963 | 3.254533e-51 | -8.615850e-47 |
| Msa0292400 | Msa0467300 | 0.831821 | 1.342869e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467300 | MtrunA17_Chr3g0121521 | 94.177 | 395 | 14 | 2 | 1 | 386 | 1 | 395 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467300 | AT3G23910.1 | 40.506 | 395 | 209 | 5 | 6 | 374 | 14 | 408 | 1.35e-86 | 269 |
| Msa0467300 | AT3G24255.2 | 38.015 | 413 | 223 | 7 | 6 | 385 | 14 | 426 | 1.91e-78 | 248 |
| Msa0467300 | AT3G24255.1 | 41.791 | 335 | 174 | 3 | 63 | 376 | 401 | 735 | 2.28e-72 | 240 |
| Msa0467300 | AT3G24255.7 | 40.988 | 344 | 182 | 3 | 63 | 385 | 483 | 826 | 1.22e-71 | 239 |
| Msa0467300 | AT3G23910.2 | 45.276 | 254 | 118 | 3 | 142 | 374 | 50 | 303 | 1.38e-70 | 224 |
| Msa0467300 | AT3G24255.8 | 43.019 | 265 | 130 | 3 | 142 | 385 | 50 | 314 | 9.75e-68 | 217 |
| Msa0467300 | AT3G24255.6 | 36.041 | 394 | 215 | 8 | 6 | 368 | 14 | 401 | 6.87e-65 | 213 |
Find 87 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATTCACATTTGAAATT+TGG | 0.100664 | 3_3:+68528176 | Msa0467300:five_prime_UTR |
| AACTTCAAACATACAGATTT+TGG | 0.181040 | 3_3:-68532773 | None:intergenic |
| GGTTTGATTCTTCTTCTTCT+TGG | 0.183880 | 3_3:-68528366 | None:intergenic |
| TTCTTCAGATTCTATTCTTT+TGG | 0.203000 | 3_3:+68528859 | Msa0467300:intron |
| CCCAACCTCGTTGCTCATTA+TGG | 0.220572 | 3_3:+68532744 | Msa0467300:three_prime_UTR |
| GCAATTGGAACTTGAGAATA+AGG | 0.242656 | 3_3:+68529670 | Msa0467300:intron |
| CATGAATCTAGGCGAAAATT+TGG | 0.266114 | 3_3:+68529447 | Msa0467300:CDS |
| TATGACGTTAAAGGATATTC+AGG | 0.272206 | 3_3:+68530019 | Msa0467300:CDS |
| TCTCATGGTTGGCCAATATT+TGG | 0.273858 | 3_3:+68531775 | Msa0467300:CDS |
| TTTCTTCCGTTGATTGATAA+TGG | 0.295499 | 3_3:+68528205 | Msa0467300:exon |
| TCATACTCGGCAAAATATAC+TGG | 0.307505 | 3_3:+68532635 | Msa0467300:CDS |
| TGAATTGAATTACCGAAATC+TGG | 0.307995 | 3_3:-68528582 | None:intergenic |
| TATCAATCAACGGAAGAAAA+TGG | 0.321391 | 3_3:-68528201 | None:intergenic |
| TGAGACCATTGTAGCTCATT+TGG | 0.323304 | 3_3:+68531723 | Msa0467300:CDS |
| TCTTTACAAAATCCAGATTT+CGG | 0.332313 | 3_3:+68528570 | Msa0467300:CDS |
| CCTAGAGCCGGTGATGGTTC+TGG | 0.353151 | 3_3:+68532708 | Msa0467300:CDS |
| AGATGCTTACTTAGAACATT+TGG | 0.357594 | 3_3:+68528670 | Msa0467300:intron |
| TCATCCACGTATATATCATT+TGG | 0.371803 | 3_3:-68531332 | None:intergenic |
| CACATTCGTGGAGTAAATCT+TGG | 0.374860 | 3_3:-68528399 | None:intergenic |
| AGAAGAGAGATCAGAGAATT+CGG | 0.378958 | 3_3:-68528550 | None:intergenic |
| GGAGGGGACTATGACGTTAA+AGG | 0.382729 | 3_3:+68530010 | Msa0467300:CDS |
| CAATCAATAACTCATGATTC+AGG | 0.388820 | 3_3:-68529980 | None:intergenic |
| TAGATATTCTCTTGAATACT+TGG | 0.402244 | 3_3:+68531693 | Msa0467300:intron |
| ATTGTAGCTCATTTGGTTAG+AGG | 0.418807 | 3_3:+68531730 | Msa0467300:CDS |
| TATGTAACATTCAAGTTGTC+AGG | 0.423398 | 3_3:+68532908 | Msa0467300:three_prime_UTR |
| TTCAACGGAGAACCAAATAT+TGG | 0.430959 | 3_3:-68531787 | None:intergenic |
| TTCAATCTCTTTAGCTACAT+TGG | 0.435257 | 3_3:-68528726 | None:intergenic |
| AGGAAACTGACATGCTGAAC+TGG | 0.438676 | 3_3:+68532883 | Msa0467300:three_prime_UTR |
| TGAGTTATTGATTGAAGTGT+TGG | 0.448149 | 3_3:+68529989 | Msa0467300:CDS |
| ACTTAGGTGTCTTGTGGTAA+AGG | 0.448895 | 3_3:+68531563 | Msa0467300:CDS |
| CCATAATGAGCAACGAGGTT+GGG | 0.456774 | 3_3:-68532744 | None:intergenic |
| GGAGGCTAAACTTGAAGAGT+TGG | 0.457166 | 3_3:+68528880 | Msa0467300:CDS |
| GTTGAAGCTAATATCAATCA+AGG | 0.459869 | 3_3:+68531804 | Msa0467300:CDS |
| GCCCTCTACCGTTGGCATAT+AGG | 0.460761 | 3_3:-68529913 | None:intergenic |
| GCCGGTGATGGTTCTGGCTA+AGG | 0.462788 | 3_3:+68532714 | Msa0467300:CDS |
| TTGACAGGTCTAAAAGTGAT+TGG | 0.465270 | 3_3:+68529855 | Msa0467300:CDS |
| TTACTTAGAACATTTGGAAA+AGG | 0.466490 | 3_3:+68528676 | Msa0467300:CDS |
| TTGATACTGCAAAGTCTGTC+AGG | 0.467306 | 3_3:+68531360 | Msa0467300:CDS |
| GACCTATATGCCAACGGTAG+AGG | 0.482139 | 3_3:+68529911 | Msa0467300:CDS |
| TTGATTGATATTAGCTTCAA+CGG | 0.489420 | 3_3:-68531802 | None:intergenic |
| TCCATAATGAGCAACGAGGT+TGG | 0.494291 | 3_3:-68532745 | None:intergenic |
| GTAGACACCGACATGAATCT+AGG | 0.497575 | 3_3:+68529436 | Msa0467300:CDS |
| GATAAATGCTGAGGCTAATG+AGG | 0.501176 | 3_3:+68529396 | Msa0467300:CDS |
| TGAGGGAATTTCTTCAATGC+TGG | 0.506990 | 3_3:+68529414 | Msa0467300:CDS |
| TAAAGGATGCTAACAAATCA+AGG | 0.518759 | 3_3:+68531580 | Msa0467300:CDS |
| ACATTCGTGGAGTAAATCTT+GGG | 0.522932 | 3_3:-68528398 | None:intergenic |
| AATCTCTTTAGCTACATTGG+TGG | 0.527069 | 3_3:-68528723 | None:intergenic |
| TATTGATTGAAGTGTTGGAG+GGG | 0.531809 | 3_3:+68529994 | Msa0467300:CDS |
| CCAGAACCATCACCGGCTCT+AGG | 0.534271 | 3_3:-68532708 | None:intergenic |
| CAGATTGACAATGCATTGAC+AGG | 0.537752 | 3_3:+68529840 | Msa0467300:CDS |
| GTTATTGATTGAAGTGTTGG+AGG | 0.538382 | 3_3:+68529992 | Msa0467300:CDS |
| ACCTATATGCCAACGGTAGA+GGG | 0.544751 | 3_3:+68529912 | Msa0467300:CDS |
| CATACTCGGCAAAATATACT+GGG | 0.547411 | 3_3:+68532636 | Msa0467300:CDS |
| TTCTTTGAATCATATTACAC+CGG | 0.549686 | 3_3:+68528907 | Msa0467300:CDS |
| TGGTATCTTCAACTCGCTGT+AGG | 0.556765 | 3_3:-68529944 | None:intergenic |
| GAACATGAAGAGCACATTCG+TGG | 0.557107 | 3_3:-68528411 | None:intergenic |
| TCCTTAGCCAGAACCATCAC+CGG | 0.568413 | 3_3:-68532715 | None:intergenic |
| CATGAAATGCCCTCTACCGT+TGG | 0.570086 | 3_3:-68529921 | None:intergenic |
| ATTCAGGATAGATGCATCCA+TGG | 0.576247 | 3_3:-68529964 | None:intergenic |
| GAATCTAGGCGAAAATTTGG+AGG | 0.576882 | 3_3:+68529450 | Msa0467300:CDS |
| GTAAATCTTGGGAATCTGAA+GGG | 0.577091 | 3_3:-68528387 | None:intergenic |
| ACATAAAGTTGTCTCATGGT+TGG | 0.580003 | 3_3:+68531764 | Msa0467300:CDS |
| CTTGATCCTAGAGCCGGTGA+TGG | 0.581110 | 3_3:+68532702 | Msa0467300:CDS |
| AGTATGAGTATCTAATGAGT+TGG | 0.582228 | 3_3:-68532619 | None:intergenic |
| AGTAAATCTTGGGAATCTGA+AGG | 0.582351 | 3_3:-68528388 | None:intergenic |
| TTGCAGCTTGATCCTAGAGC+CGG | 0.582505 | 3_3:+68532696 | Msa0467300:CDS |
| TCTAACCAAATGAGCTACAA+TGG | 0.590969 | 3_3:-68531728 | None:intergenic |
| CAGAAGCAAGTGAACTCCGC+AGG | 0.591758 | 3_3:+68528228 | Msa0467300:CDS |
| GAATTATACTAAGCACACTT+AGG | 0.592429 | 3_3:+68531547 | Msa0467300:CDS |
| CTTCTGCCATTATCAATCAA+CGG | 0.595703 | 3_3:-68528211 | None:intergenic |
| TTGTATTAACCATTGCAATG+AGG | 0.596339 | 3_3:-68531511 | None:intergenic |
| GAAGTCGATTCTGAAGGCCA+TGG | 0.604104 | 3_3:+68529703 | Msa0467300:CDS |
| TTGAAGCTAATATCAATCAA+GGG | 0.620980 | 3_3:+68531805 | Msa0467300:CDS |
| GCAGCAAGTCCTCATTGCAA+TGG | 0.623103 | 3_3:+68531502 | Msa0467300:intron |
| ATAAATGCTGAGGCTAATGA+GGG | 0.636629 | 3_3:+68529397 | Msa0467300:CDS |
| TGAAATGAAGTCGATTCTGA+AGG | 0.636722 | 3_3:+68529697 | Msa0467300:CDS |
| TTATTGATTGAAGTGTTGGA+GGG | 0.637105 | 3_3:+68529993 | Msa0467300:CDS |
| TTTGAATCATATTACACCGG+AGG | 0.640103 | 3_3:+68528910 | Msa0467300:CDS |
| AAGCACACTTAGGTGTCTTG+TGG | 0.641823 | 3_3:+68531557 | Msa0467300:CDS |
| CTTGCGAAAACTCGTAACGA+TGG | 0.646331 | 3_3:+68528752 | Msa0467300:CDS |
| ACTCATTAGATACTCATACT+CGG | 0.649710 | 3_3:+68532622 | Msa0467300:CDS |
| GCATACATAAAGTTGTCTCA+TGG | 0.652475 | 3_3:+68531760 | Msa0467300:CDS |
| ACAGCGAGTTGAAGATACCA+TGG | 0.659448 | 3_3:+68529947 | Msa0467300:CDS |
| ATAGGAGCAGATAAATGCTG+AGG | 0.674029 | 3_3:+68529387 | Msa0467300:intron |
| TTTGCAGACCTATATGCCAA+CGG | 0.681871 | 3_3:+68529905 | Msa0467300:CDS |
| TCATTCTTAACAGAACACAG+TGG | 0.739164 | 3_3:+68528515 | Msa0467300:intron |
| GGTATCCATAATGAGCAACG+AGG | 0.806237 | 3_3:-68532749 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAAAATAAAATAAA+TGG | + | chr3_3:68532444-68532463 | Msa0467300:intron | 0.0% |
| !!! | ATTTTTAAAATAAAATAAAT+GGG | + | chr3_3:68532445-68532464 | Msa0467300:intron | 0.0% |
| !! | AAGAATTAAGAAAATTGATA+TGG | + | chr3_3:68529053-68529072 | Msa0467300:intron | 15.0% |
| !! | ATAAATACTTATTGTTAACT+TGG | - | chr3_3:68529107-68529126 | None:intergenic | 15.0% |
| !! | AGTATTTATATCATATCTAT+TGG | + | chr3_3:68529118-68529137 | Msa0467300:intron | 15.0% |
| !! | AAAAACATGTTAAATACTTA+GGG | + | chr3_3:68529147-68529166 | Msa0467300:intron | 15.0% |
| !!! | TAACTTAATGTTTTTATATG+TGG | - | chr3_3:68531227-68531246 | None:intergenic | 15.0% |
| !!! | GTTAACTTTAATTCTTTTAA+GGG | + | chr3_3:68532523-68532542 | Msa0467300:intron | 15.0% |
| !! | AATTGATATGGTATTATGTT+CGG | + | chr3_3:68529065-68529084 | Msa0467300:intron | 20.0% |
| !! | GAAAAACATGTTAAATACTT+AGG | + | chr3_3:68529146-68529165 | Msa0467300:intron | 20.0% |
| !! | AAAACATGTTAAATACTTAG+GGG | + | chr3_3:68529148-68529167 | Msa0467300:intron | 20.0% |
| !!! | CTTTTCATTGTAAATTCAAA+TGG | + | chr3_3:68529729-68529748 | Msa0467300:intron | 20.0% |
| !! | ATTCATTCTGATATTCTATT+TGG | + | chr3_3:68530350-68530369 | Msa0467300:intron | 20.0% |
| !!! | CTTATTCTGCATTTTTTTTT+GGG | + | chr3_3:68530444-68530463 | Msa0467300:intron | 20.0% |
| !! | GAAAGGGTAATTATAATATT+AGG | + | chr3_3:68531045-68531064 | Msa0467300:intron | 20.0% |
| !! | ATTATAATATTAGGTGACAA+AGG | + | chr3_3:68531054-68531073 | Msa0467300:intron | 20.0% |
| !!! | TGATGATTTGTTAACTTTTT+TGG | + | chr3_3:68531290-68531309 | Msa0467300:intron | 20.0% |
| !! | GGGTTTAATGTTATTAAATT+TGG | + | chr3_3:68531631-68531650 | Msa0467300:intron | 20.0% |
| !!! | TCATTTCTTTTGATAATAAC+TGG | + | chr3_3:68532038-68532057 | Msa0467300:intron | 20.0% |
| !!! | GGTTAACTTTAATTCTTTTA+AGG | + | chr3_3:68532522-68532541 | Msa0467300:intron | 20.0% |
| !! | CATTATAAATAATGCAGTAT+TGG | + | chr3_3:68532546-68532565 | Msa0467300:intron | 20.0% |
| !! | CACAATTCACATTTGAAATT+TGG | + | chr3_3:68528176-68528195 | Msa0467300:five_prime_UTR | 25.0% |
| ! | TCTTTACAAAATCCAGATTT+CGG | + | chr3_3:68528570-68528589 | Msa0467300:CDS | 25.0% |
| ! | TTACTTAGAACATTTGGAAA+AGG | + | chr3_3:68528676-68528695 | Msa0467300:CDS | 25.0% |
| !! | TTCTTCAGATTCTATTCTTT+TGG | + | chr3_3:68528859-68528878 | Msa0467300:intron | 25.0% |
| ! | TTCTTTGAATCATATTACAC+CGG | + | chr3_3:68528907-68528926 | Msa0467300:CDS | 25.0% |
| !!! | TTAAATACTTAGGGGTATTT+TGG | + | chr3_3:68529156-68529175 | Msa0467300:intron | 25.0% |
| !! | TAGTTGAAAATTTCTGAAGA+GGG | + | chr3_3:68529196-68529215 | Msa0467300:intron | 25.0% |
| !!! | CAGTCGTTTTTGATAATTAT+AGG | + | chr3_3:68529369-68529388 | Msa0467300:intron | 25.0% |
| !! | GAATTAGTTTCAAACAAATG+TGG | + | chr3_3:68529529-68529548 | Msa0467300:intron | 25.0% |
| !! | TCTTTTACAGAGAATCATTT+TGG | + | chr3_3:68529579-68529598 | Msa0467300:intron | 25.0% |
| ! | TCAGATAATCATCTATTCTA+TGG | + | chr3_3:68529775-68529794 | Msa0467300:intron | 25.0% |
| ! | AAACAAGTCAAAGAATGAAA+CGG | - | chr3_3:68530060-68530079 | None:intergenic | 25.0% |
| ! | TTGTCAAATCTAATGAACAA+TGG | - | chr3_3:68530090-68530109 | None:intergenic | 25.0% |
| !!! | GCTTATTCTGCATTTTTTTT+TGG | + | chr3_3:68530443-68530462 | Msa0467300:intron | 25.0% |
| !! | TTTTACGCATCATTACATAT+TGG | - | chr3_3:68530909-68530928 | None:intergenic | 25.0% |
| ! | AACAGCAAAATATGATGTTA+AGG | - | chr3_3:68530997-68531016 | None:intergenic | 25.0% |
| ! | TCATGTAGAAAACTTATGAA+AGG | + | chr3_3:68531028-68531047 | Msa0467300:intron | 25.0% |
| ! | CATGTAGAAAACTTATGAAA+GGG | + | chr3_3:68531029-68531048 | Msa0467300:intron | 25.0% |
| !!! | CTTTTTTGGTCTTGTTATTT+AGG | + | chr3_3:68531304-68531323 | Msa0467300:intron | 25.0% |
| !! | TTTTCCAAATGATATATACG+TGG | + | chr3_3:68531328-68531347 | Msa0467300:CDS | 25.0% |
| !!! | TTTCCTTTTTCTCTTTGTTT+AGG | + | chr3_3:68531390-68531409 | Msa0467300:intron | 25.0% |
| ! | AAACCTAAACAAAGAGAAAA+AGG | - | chr3_3:68531396-68531415 | None:intergenic | 25.0% |
| !! | TAACTTAGAAAAGTATGCTT+AGG | - | chr3_3:68531454-68531473 | None:intergenic | 25.0% |
| ! | TAGATATTCTCTTGAATACT+TGG | + | chr3_3:68531693-68531712 | Msa0467300:intron | 25.0% |
| !! | TTGATTGATATTAGCTTCAA+CGG | - | chr3_3:68531805-68531824 | None:intergenic | 25.0% |
| ! | TTGAAGCTAATATCAATCAA+GGG | + | chr3_3:68531805-68531824 | Msa0467300:CDS | 25.0% |
| !!! | ATTTTTTATAGCCAACACAT+TGG | - | chr3_3:68531888-68531907 | None:intergenic | 25.0% |
| ! | GTGTTAAAAAATTTCTCATG+TGG | + | chr3_3:68531941-68531960 | Msa0467300:intron | 25.0% |
| ! | AATTTAAGTAAGACAGTTTG+AGG | - | chr3_3:68531980-68531999 | None:intergenic | 25.0% |
| ! | AAATCATGTCTCATATGTTT+CGG | + | chr3_3:68532500-68532519 | Msa0467300:intron | 25.0% |
| !! | AACTTCAAACATACAGATTT+TGG | - | chr3_3:68532776-68532795 | None:intergenic | 25.0% |
| ! | CAAATAAAAAAGTGAATGTG+AGG | - | chr3_3:68532810-68532829 | None:intergenic | 25.0% |
| TATCAATCAACGGAAGAAAA+TGG | - | chr3_3:68528204-68528223 | None:intergenic | 30.0% | |
| ! | TTTCTTCCGTTGATTGATAA+TGG | + | chr3_3:68528205-68528224 | Msa0467300:exon | 30.0% |
| TGAATTGAATTACCGAAATC+TGG | - | chr3_3:68528585-68528604 | None:intergenic | 30.0% | |
| ACTGAATAACGAAAACGAAA+CGG | - | chr3_3:68528616-68528635 | None:intergenic | 30.0% | |
| AGATGCTTACTTAGAACATT+TGG | + | chr3_3:68528670-68528689 | Msa0467300:intron | 30.0% | |
| TTCAATCTCTTTAGCTACAT+TGG | - | chr3_3:68528729-68528748 | None:intergenic | 30.0% | |
| TTTGTTTCACAGAACAACTA+TGG | + | chr3_3:68528798-68528817 | Msa0467300:intron | 30.0% | |
| ! | TTCAGATTCTATTCTTTTGG+AGG | + | chr3_3:68528862-68528881 | Msa0467300:intron | 30.0% |
| TTCTTGTGATTTAGTCATCT+GGG | - | chr3_3:68529038-68529057 | None:intergenic | 30.0% | |
| ATTCTTGTGATTTAGTCATC+TGG | - | chr3_3:68529039-68529058 | None:intergenic | 30.0% | |
| ! | GTAGTTGAAAATTTCTGAAG+AGG | + | chr3_3:68529195-68529214 | Msa0467300:intron | 30.0% |
| !! | TGAAGAGGGTTTTATGTATA+GGG | + | chr3_3:68529210-68529229 | Msa0467300:intron | 30.0% |
| AATATACATAACTCATGCCA+GGG | - | chr3_3:68529282-68529301 | None:intergenic | 30.0% | |
| GTCAAAACATGATTACTGAA+TGG | - | chr3_3:68529350-68529369 | None:intergenic | 30.0% | |
| AAAAGAAGCAGAAAATGTTC+AGG | - | chr3_3:68529565-68529584 | None:intergenic | 30.0% | |
| ! | TTTACAGAGAATCATTTTGG+TGG | + | chr3_3:68529582-68529601 | Msa0467300:intron | 30.0% |
| TTTACAATGAAAAGACTCCA+TGG | - | chr3_3:68529723-68529742 | None:intergenic | 30.0% | |
| CAATCAATAACTCATGATTC+AGG | - | chr3_3:68529983-68530002 | None:intergenic | 30.0% | |
| ! | TGAGTTATTGATTGAAGTGT+TGG | + | chr3_3:68529989-68530008 | Msa0467300:CDS | 30.0% |
| !! | TTATTGATTGAAGTGTTGGA+GGG | + | chr3_3:68529993-68530012 | Msa0467300:CDS | 30.0% |
| TATGACGTTAAAGGATATTC+AGG | + | chr3_3:68530019-68530038 | Msa0467300:CDS | 30.0% | |
| AATTACGTTTAGCAATGATG+TGG | + | chr3_3:68530108-68530127 | Msa0467300:intron | 30.0% | |
| ! | CTTTTTCCTAACAGATTTGA+TGG | - | chr3_3:68530151-68530170 | None:intergenic | 30.0% |
| AGTTATAGTGTTAGCCATTT+AGG | + | chr3_3:68530175-68530194 | Msa0467300:intron | 30.0% | |
| !! | TTTCTTGTGGTATTTTGAAG+TGG | + | chr3_3:68530258-68530277 | Msa0467300:intron | 30.0% |
| !!! | CTCAATTGCTTTTAGTTTGA+TGG | + | chr3_3:68530323-68530342 | Msa0467300:intron | 30.0% |
| !!! | TTCTGCATTTTTTTTTGGGA+TGG | + | chr3_3:68530448-68530467 | Msa0467300:intron | 30.0% |
| !!! | TCTGCATTTTTTTTTGGGAT+GGG | + | chr3_3:68530449-68530468 | Msa0467300:intron | 30.0% |
| !! | AATTTGCTGGATATATCATG+TGG | + | chr3_3:68530487-68530506 | Msa0467300:intron | 30.0% |
| TGATTTATGGTCTGTATTCT+AGG | + | chr3_3:68530531-68530550 | Msa0467300:intron | 30.0% | |
| !! | AGTTTTAGTACCTTTGTTGT+AGG | + | chr3_3:68530772-68530791 | Msa0467300:intron | 30.0% |
| GTATTAATCACCTACAACAA+AGG | - | chr3_3:68530785-68530804 | None:intergenic | 30.0% | |
| TGTGCTGTACTTGTAAAATT+TGG | + | chr3_3:68530815-68530834 | Msa0467300:intron | 30.0% | |
| ! | AATGTTTGGGGTAATGAAAT+TGG | - | chr3_3:68530962-68530981 | None:intergenic | 30.0% |
| ATTCCATCTAGAAATGTTTG+GGG | - | chr3_3:68530974-68530993 | None:intergenic | 30.0% | |
| GATTCCATCTAGAAATGTTT+GGG | - | chr3_3:68530975-68530994 | None:intergenic | 30.0% | |
| TCATCCACGTATATATCATT+TGG | - | chr3_3:68531335-68531354 | None:intergenic | 30.0% | |
| GCTTAGGTCATAATGAATTT+GGG | - | chr3_3:68531438-68531457 | None:intergenic | 30.0% | |
| TGCTTAGGTCATAATGAATT+TGG | - | chr3_3:68531439-68531458 | None:intergenic | 30.0% | |
| TTGTATTAACCATTGCAATG+AGG | - | chr3_3:68531514-68531533 | None:intergenic | 30.0% | |
| GAATTATACTAAGCACACTT+AGG | + | chr3_3:68531547-68531566 | Msa0467300:CDS | 30.0% | |
| TAAAGGATGCTAACAAATCA+AGG | + | chr3_3:68531580-68531599 | Msa0467300:CDS | 30.0% | |
| GTTGAAGCTAATATCAATCA+AGG | + | chr3_3:68531804-68531823 | Msa0467300:CDS | 30.0% | |
| TAAAAAACAGCATACAGACT+AGG | - | chr3_3:68532092-68532111 | None:intergenic | 30.0% | |
| ! | CTATGATATAGACACTTTTG+AGG | - | chr3_3:68532117-68532136 | None:intergenic | 30.0% |
| TTACTATTACTAGAGTGACT+CGG | + | chr3_3:68532164-68532183 | Msa0467300:intron | 30.0% | |
| !!! | ACATGTTTTGAAGTCACATT+TGG | + | chr3_3:68532271-68532290 | Msa0467300:intron | 30.0% |
| GTTCTATAGGGTAAAGTAAT+TGG | + | chr3_3:68532302-68532321 | Msa0467300:intron | 30.0% | |
| ! | TCTTTTAGACACGTGTAAAT+AGG | + | chr3_3:68532340-68532359 | Msa0467300:intron | 30.0% |
| AACTAACAGCAAAACATCAA+GGG | - | chr3_3:68532414-68532433 | None:intergenic | 30.0% | |
| AAACTAACAGCAAAACATCA+AGG | - | chr3_3:68532415-68532434 | None:intergenic | 30.0% | |
| AATCATGTCTCATATGTTTC+GGG | + | chr3_3:68532501-68532520 | Msa0467300:intron | 30.0% | |
| AGTATGAGTATCTAATGAGT+TGG | - | chr3_3:68532622-68532641 | None:intergenic | 30.0% | |
| ACTCATTAGATACTCATACT+CGG | + | chr3_3:68532622-68532641 | Msa0467300:CDS | 30.0% | |
| ! | TTCAAACATACAGATTTTGG+CGG | - | chr3_3:68532773-68532792 | None:intergenic | 30.0% |
| ! | GATTTACTGCAATTTTAGAC+AGG | + | chr3_3:68532863-68532882 | Msa0467300:three_prime_UTR | 30.0% |
| !! | TATGTAACATTCAAGTTGTC+AGG | + | chr3_3:68532908-68532927 | Msa0467300:three_prime_UTR | 30.0% |
| CTTCTGCCATTATCAATCAA+CGG | - | chr3_3:68528214-68528233 | None:intergenic | 35.0% | |
| AAGTGAGAGAGTAACGAAAA+CGG | - | chr3_3:68528280-68528299 | None:intergenic | 35.0% | |
| AGGTTTGGAGAATGTGATAA+CGG | - | chr3_3:68528309-68528328 | None:intergenic | 35.0% | |
| TGAAATTCGACTGAAAGGAA+AGG | - | chr3_3:68528329-68528348 | None:intergenic | 35.0% | |
| ATCTGTGAAATTCGACTGAA+AGG | - | chr3_3:68528334-68528353 | None:intergenic | 35.0% | |
| GGTTTGATTCTTCTTCTTCT+TGG | - | chr3_3:68528369-68528388 | None:intergenic | 35.0% | |
| GTAAATCTTGGGAATCTGAA+GGG | - | chr3_3:68528390-68528409 | None:intergenic | 35.0% | |
| AGTAAATCTTGGGAATCTGA+AGG | - | chr3_3:68528391-68528410 | None:intergenic | 35.0% | |
| ACATTCGTGGAGTAAATCTT+GGG | - | chr3_3:68528401-68528420 | None:intergenic | 35.0% | |
| GAAAATTGAAGAATGTGCGT+AGG | - | chr3_3:68528443-68528462 | None:intergenic | 35.0% | |
| TCATTCTTAACAGAACACAG+TGG | + | chr3_3:68528515-68528534 | Msa0467300:intron | 35.0% | |
| AGAAGAGAGATCAGAGAATT+CGG | - | chr3_3:68528553-68528572 | None:intergenic | 35.0% | |
| AATCTCTTTAGCTACATTGG+TGG | - | chr3_3:68528726-68528745 | None:intergenic | 35.0% | |
| TTTGAATCATATTACACCGG+AGG | + | chr3_3:68528910-68528929 | Msa0467300:CDS | 35.0% | |
| !! | CTGAAGAGGGTTTTATGTAT+AGG | + | chr3_3:68529209-68529228 | Msa0467300:intron | 35.0% |
| TATGCCTATGCTCATTATGA+TGG | + | chr3_3:68529248-68529267 | Msa0467300:intron | 35.0% | |
| CAATATACATAACTCATGCC+AGG | - | chr3_3:68529283-68529302 | None:intergenic | 35.0% | |
| ATAAATGCTGAGGCTAATGA+GGG | + | chr3_3:68529397-68529416 | Msa0467300:CDS | 35.0% | |
| ! | ATTTTCGCCTAGATTCATGT+CGG | - | chr3_3:68529446-68529465 | None:intergenic | 35.0% |
| CATGAATCTAGGCGAAAATT+TGG | + | chr3_3:68529447-68529466 | Msa0467300:CDS | 35.0% | |
| CAATTGCTGCAACACATAAA+AGG | - | chr3_3:68529657-68529676 | None:intergenic | 35.0% | |
| ! | CTTTTATGTGTTGCAGCAAT+TGG | + | chr3_3:68529655-68529674 | Msa0467300:intron | 35.0% |
| GCAATTGGAACTTGAGAATA+AGG | + | chr3_3:68529670-68529689 | Msa0467300:intron | 35.0% | |
| ! | TGAAATGAAGTCGATTCTGA+AGG | + | chr3_3:68529697-68529716 | Msa0467300:CDS | 35.0% |
| ! | TAAAGCATCAAACCTGAAAG+GGG | - | chr3_3:68529817-68529836 | None:intergenic | 35.0% |
| ! | CTAAAGCATCAAACCTGAAA+GGG | - | chr3_3:68529818-68529837 | None:intergenic | 35.0% |
| ! | TCTAAAGCATCAAACCTGAA+AGG | - | chr3_3:68529819-68529838 | None:intergenic | 35.0% |
| TTGACAGGTCTAAAAGTGAT+TGG | + | chr3_3:68529855-68529874 | Msa0467300:CDS | 35.0% | |
| !! | GTTATTGATTGAAGTGTTGG+AGG | + | chr3_3:68529992-68530011 | Msa0467300:CDS | 35.0% |
| !! | TATTGATTGAAGTGTTGGAG+GGG | + | chr3_3:68529994-68530013 | Msa0467300:CDS | 35.0% |
| TACGAACCATCAAATCTGTT+AGG | + | chr3_3:68530142-68530161 | Msa0467300:intron | 35.0% | |
| ATAGTGTTAGCCATTTAGGT+AGG | + | chr3_3:68530179-68530198 | Msa0467300:intron | 35.0% | |
| AAAAGCCTTTCACAGTTCAT+AGG | - | chr3_3:68530207-68530226 | None:intergenic | 35.0% | |
| !! | TGCTTTGAAGTTGTTTCTTG+TGG | + | chr3_3:68530245-68530264 | Msa0467300:intron | 35.0% |
| !!! | CTGCATTTTTTTTTGGGATG+GGG | + | chr3_3:68530450-68530469 | Msa0467300:intron | 35.0% |
| !!! | TGCATTTTTTTTTGGGATGG+GGG | + | chr3_3:68530451-68530470 | Msa0467300:intron | 35.0% |
| ATATCATGTGGTTACATCAG+TGG | + | chr3_3:68530499-68530518 | Msa0467300:intron | 35.0% | |
| TATCATGTGGTTACATCAGT+GGG | + | chr3_3:68530500-68530519 | Msa0467300:intron | 35.0% | |
| !!! | GTGGGTTTGCTTTTGATTTA+TGG | + | chr3_3:68530518-68530537 | Msa0467300:intron | 35.0% |
| AAAATACCAAAATACCCCCA+TGG | - | chr3_3:68530677-68530696 | None:intergenic | 35.0% | |
| CGCATCATTACATATTGGAT+GGG | - | chr3_3:68530904-68530923 | None:intergenic | 35.0% | |
| ACGCATCATTACATATTGGA+TGG | - | chr3_3:68530905-68530924 | None:intergenic | 35.0% | |
| AATGATCCTTCTACCAAACT+GGG | - | chr3_3:68530937-68530956 | None:intergenic | 35.0% | |
| AAATGATCCTTCTACCAAAC+TGG | - | chr3_3:68530938-68530957 | None:intergenic | 35.0% | |
| ! | TTACCCCAAACATTTCTAGA+TGG | + | chr3_3:68530968-68530987 | Msa0467300:intron | 35.0% |
| GGATTCCATCTAGAAATGTT+TGG | - | chr3_3:68530976-68530995 | None:intergenic | 35.0% | |
| CTAAAGGAAGAGATTAGGAA+CGG | - | chr3_3:68531153-68531172 | None:intergenic | 35.0% | |
| ATAATGAATTTGGGAGGAGA+GGG | - | chr3_3:68531429-68531448 | None:intergenic | 35.0% | |
| TAGGTCATAATGAATTTGGG+AGG | - | chr3_3:68531435-68531454 | None:intergenic | 35.0% | |
| TGACTGTAATGTAGTCCTTT+CGG | + | chr3_3:68531605-68531624 | Msa0467300:intron | 35.0% | |
| TAATGTAGTCCTTTCGGTTT+GGG | + | chr3_3:68531611-68531630 | Msa0467300:intron | 35.0% | |
| AACATTAAACCCAAACCGAA+AGG | - | chr3_3:68531623-68531642 | None:intergenic | 35.0% | |
| TCTAACCAAATGAGCTACAA+TGG | - | chr3_3:68531731-68531750 | None:intergenic | 35.0% | |
| ATTGTAGCTCATTTGGTTAG+AGG | + | chr3_3:68531730-68531749 | Msa0467300:CDS | 35.0% | |
| GCATACATAAAGTTGTCTCA+TGG | + | chr3_3:68531760-68531779 | Msa0467300:CDS | 35.0% | |
| ACATAAAGTTGTCTCATGGT+TGG | + | chr3_3:68531764-68531783 | Msa0467300:CDS | 35.0% | |
| TTCAACGGAGAACCAAATAT+TGG | - | chr3_3:68531790-68531809 | None:intergenic | 35.0% | |
| TTATTCTTCCTTGTGCTGTA+CGG | + | chr3_3:68531916-68531935 | Msa0467300:intron | 35.0% | |
| TGTTGAATCCACTGAAATTG+TGG | + | chr3_3:68532003-68532022 | Msa0467300:intron | 35.0% | |
| AAACTACTCCACAATTTCAG+TGG | - | chr3_3:68532014-68532033 | None:intergenic | 35.0% | |
| TACTATTACTAGAGTGACTC+GGG | + | chr3_3:68532165-68532184 | Msa0467300:intron | 35.0% | |
| TGGGAGTGAGGATAATTTAA+AGG | + | chr3_3:68532246-68532265 | Msa0467300:intron | 35.0% | |
| TTAGACACGTGTAAATAGGT+AGG | + | chr3_3:68532344-68532363 | Msa0467300:intron | 35.0% | |
| ACTAACAGCAAAACATCAAG+GGG | - | chr3_3:68532413-68532432 | None:intergenic | 35.0% | |
| !!! | TTTGTGCGTTGACTTTGTTT+TGG | + | chr3_3:68532573-68532592 | Msa0467300:intron | 35.0% |
| !! | TGGGTTGACTTTTCAGAATT+TGG | + | chr3_3:68532596-68532615 | Msa0467300:intron | 35.0% |
| TCATACTCGGCAAAATATAC+TGG | + | chr3_3:68532635-68532654 | Msa0467300:CDS | 35.0% | |
| CATACTCGGCAAAATATACT+GGG | + | chr3_3:68532636-68532655 | Msa0467300:CDS | 35.0% | |
| AGAGTAACGAAAACGGAGAA+AGG | - | chr3_3:68528273-68528292 | None:intergenic | 40.0% | |
| TTCGACTGAAAGGAAAGGTT+TGG | - | chr3_3:68528324-68528343 | None:intergenic | 40.0% | |
| CACATTCGTGGAGTAAATCT+TGG | - | chr3_3:68528402-68528421 | None:intergenic | 40.0% | |
| AATCAGCAAGTACTAACCTC+CGG | - | chr3_3:68528929-68528948 | None:intergenic | 40.0% | |
| !! | GAGGGTTTTATGTATAGGGA+AGG | + | chr3_3:68529214-68529233 | Msa0467300:intron | 40.0% |
| GGTTCCATCATAATGAGCAT+AGG | - | chr3_3:68529255-68529274 | None:intergenic | 40.0% | |
| ATAGGAGCAGATAAATGCTG+AGG | + | chr3_3:68529387-68529406 | Msa0467300:intron | 40.0% | |
| GATAAATGCTGAGGCTAATG+AGG | + | chr3_3:68529396-68529415 | Msa0467300:CDS | 40.0% | |
| TGAGGGAATTTCTTCAATGC+TGG | + | chr3_3:68529414-68529433 | Msa0467300:CDS | 40.0% | |
| GAATCTAGGCGAAAATTTGG+AGG | + | chr3_3:68529450-68529469 | Msa0467300:CDS | 40.0% | |
| !!! | GCGTTGGCTGTTATTCTTTT+CGG | + | chr3_3:68529502-68529521 | Msa0467300:intron | 40.0% |
| ! | AAAGCATCAAACCTGAAAGG+GGG | - | chr3_3:68529816-68529835 | None:intergenic | 40.0% |
| ! | CAGATTGACAATGCATTGAC+AGG | + | chr3_3:68529840-68529859 | Msa0467300:CDS | 40.0% |
| TTTGCAGACCTATATGCCAA+CGG | + | chr3_3:68529905-68529924 | Msa0467300:CDS | 40.0% | |
| ATTCAGGATAGATGCATCCA+TGG | - | chr3_3:68529967-68529986 | None:intergenic | 40.0% | |
| TTCATAGGAGCCTACCTAAA+TGG | - | chr3_3:68530192-68530211 | None:intergenic | 40.0% | |
| AGACCTTGACCAATAAAGTC+AGG | + | chr3_3:68530300-68530319 | Msa0467300:intron | 40.0% | |
| GCAATTGAGCCTGACTTTAT+TGG | - | chr3_3:68530312-68530331 | None:intergenic | 40.0% | |
| !!! | GCATTTTTTTTTGGGATGGG+GGG | + | chr3_3:68530452-68530471 | Msa0467300:intron | 40.0% |
| GTGTGAATCTCAGAATTTGC+TGG | + | chr3_3:68530474-68530493 | Msa0467300:intron | 40.0% | |
| !!! | GGGGTATTTTGGTATATCTG+CGG | - | chr3_3:68530596-68530615 | None:intergenic | 40.0% |
| ATATACCAAAATACCCCCAG+CGG | + | chr3_3:68530599-68530618 | Msa0467300:intron | 40.0% | |
| ! | TTTGGTATTTTCGTGACGTG+TGG | + | chr3_3:68530686-68530705 | Msa0467300:intron | 40.0% |
| ! | TTGGTATTTTCGTGACGTGT+GGG | + | chr3_3:68530687-68530706 | Msa0467300:intron | 40.0% |
| GCGTAAAAAAGATCCCAGTT+TGG | + | chr3_3:68530921-68530940 | Msa0467300:intron | 40.0% | |
| AAAGATCCCAGTTTGGTAGA+AGG | + | chr3_3:68530928-68530947 | Msa0467300:intron | 40.0% | |
| CGTTCCTAATCTCTTCCTTT+AGG | + | chr3_3:68531151-68531170 | Msa0467300:intron | 40.0% | |
| TCCTAATCTCTTCCTTTAGG+AGG | + | chr3_3:68531154-68531173 | Msa0467300:intron | 40.0% | |
| TCCTCCTAAAGGAAGAGATT+AGG | - | chr3_3:68531158-68531177 | None:intergenic | 40.0% | |
| ! | TAATCTCTTCCTTTAGGAGG+AGG | + | chr3_3:68531157-68531176 | Msa0467300:intron | 40.0% |
| ATTCAACAACCTCCTCCTAA+AGG | - | chr3_3:68531169-68531188 | None:intergenic | 40.0% | |
| TTGATACTGCAAAGTCTGTC+AGG | + | chr3_3:68531360-68531379 | Msa0467300:CDS | 40.0% | |
| CATAATGAATTTGGGAGGAG+AGG | - | chr3_3:68531430-68531449 | None:intergenic | 40.0% | |
| ACTTAGGTGTCTTGTGGTAA+AGG | + | chr3_3:68531563-68531582 | Msa0467300:CDS | 40.0% | |
| GTAATGTAGTCCTTTCGGTT+TGG | + | chr3_3:68531610-68531629 | Msa0467300:intron | 40.0% | |
| TGAGACCATTGTAGCTCATT+TGG | + | chr3_3:68531723-68531742 | Msa0467300:CDS | 40.0% | |
| ! | TCTCATGGTTGGCCAATATT+TGG | + | chr3_3:68531775-68531794 | Msa0467300:CDS | 40.0% |
| ! | AAGTTTTCTCTGCGAAGTAG+AGG | + | chr3_3:68531852-68531871 | Msa0467300:CDS | 40.0% |
| GTGAGACAATTCCAATGTGT+TGG | + | chr3_3:68531874-68531893 | Msa0467300:intron | 40.0% | |
| ! | GACAGTTTGAGGTGAAAACT+TGG | - | chr3_3:68531969-68531988 | None:intergenic | 40.0% |
| ACCACAATATGTATCACACG+TGG | - | chr3_3:68532227-68532246 | None:intergenic | 40.0% | |
| ACGTGTGATACATATTGTGG+TGG | + | chr3_3:68532226-68532245 | Msa0467300:intron | 40.0% | |
| CGTGTGATACATATTGTGGT+GGG | + | chr3_3:68532227-68532246 | Msa0467300:intron | 40.0% | |
| !! | TTGAAGTCACATTTGGTGCA+TGG | + | chr3_3:68532278-68532297 | Msa0467300:intron | 40.0% |
| ! | TTTGGTGCATGGTGTTCTAT+AGG | + | chr3_3:68532289-68532308 | Msa0467300:intron | 40.0% |
| TTGGTGCATGGTGTTCTATA+GGG | + | chr3_3:68532290-68532309 | Msa0467300:intron | 40.0% | |
| TCACCATAAGACATGCTAAC+TGG | - | chr3_3:68532388-68532407 | None:intergenic | 40.0% | |
| CGCTACAGATACATGTATGT+AGG | - | chr3_3:68532480-68532499 | None:intergenic | 40.0% | |
| !!! | TGCGTTGACTTTGTTTTGGT+GGG | + | chr3_3:68532577-68532596 | Msa0467300:intron | 40.0% |
| !! | AGGAAGGAAGAAAGTACCTG+CGG | - | chr3_3:68528247-68528266 | None:intergenic | 45.0% |
| AAACGGAGAAAGGAGAAGGA+AGG | - | chr3_3:68528263-68528282 | None:intergenic | 45.0% | |
| ACGAAAACGGAGAAAGGAGA+AGG | - | chr3_3:68528267-68528286 | None:intergenic | 45.0% | |
| ! | GAACATGAAGAGCACATTCG+TGG | - | chr3_3:68528414-68528433 | None:intergenic | 45.0% |
| CTTGCGAAAACTCGTAACGA+TGG | + | chr3_3:68528752-68528771 | Msa0467300:CDS | 45.0% | |
| GGAGGCTAAACTTGAAGAGT+TGG | + | chr3_3:68528880-68528899 | Msa0467300:CDS | 45.0% | |
| ! | TGCTCATTATGATGGAACCC+TGG | + | chr3_3:68529256-68529275 | Msa0467300:intron | 45.0% |
| ATCCATCCCTTTGTCGAATG+AGG | + | chr3_3:68529311-68529330 | Msa0467300:intron | 45.0% | |
| TCCATCCCTTTGTCGAATGA+GGG | + | chr3_3:68529312-68529331 | Msa0467300:intron | 45.0% | |
| GTAGACACCGACATGAATCT+AGG | + | chr3_3:68529436-68529455 | Msa0467300:CDS | 45.0% | |
| ACCTATATGCCAACGGTAGA+GGG | + | chr3_3:68529912-68529931 | Msa0467300:CDS | 45.0% | |
| TGGTATCTTCAACTCGCTGT+AGG | - | chr3_3:68529947-68529966 | None:intergenic | 45.0% | |
| ! | ACAGCGAGTTGAAGATACCA+TGG | + | chr3_3:68529947-68529966 | Msa0467300:CDS | 45.0% |
| AGGCTCCTATGAACTGTGAA+AGG | + | chr3_3:68530199-68530218 | Msa0467300:intron | 45.0% | |
| GAGCCTGACTTTATTGGTCA+AGG | - | chr3_3:68530306-68530325 | None:intergenic | 45.0% | |
| !!! | TAACTGCCATGGGGGTATTT+TGG | + | chr3_3:68530668-68530687 | Msa0467300:intron | 45.0% |
| TGACGTGTGGGAGCAAAAAA+TGG | + | chr3_3:68530699-68530718 | Msa0467300:intron | 45.0% | |
| TAACGCTTCACATGTGATCC+TGG | + | chr3_3:68531100-68531119 | Msa0467300:intron | 45.0% | |
| ATATGTTGCTGTGCTTTGCC+AGG | - | chr3_3:68531121-68531140 | None:intergenic | 45.0% | |
| AAGCACACTTAGGTGTCTTG+TGG | + | chr3_3:68531557-68531576 | Msa0467300:CDS | 45.0% | |
| TAACACATCCGTACAGCACA+AGG | - | chr3_3:68531927-68531946 | None:intergenic | 45.0% | |
| ! | ATTACTAGAGTGACTCGGGT+TGG | + | chr3_3:68532169-68532188 | Msa0467300:intron | 45.0% |
| ! | TTACTAGAGTGACTCGGGTT+GGG | + | chr3_3:68532170-68532189 | Msa0467300:intron | 45.0% |
| GCCACGTGTGATACATATTG+TGG | + | chr3_3:68532223-68532242 | Msa0467300:intron | 45.0% | |
| ! | TACATATTGTGGTGGGAGTG+AGG | + | chr3_3:68532234-68532253 | Msa0467300:intron | 45.0% |
| CAGCCAGTTAGCATGTCTTA+TGG | + | chr3_3:68532382-68532401 | Msa0467300:intron | 45.0% | |
| !!! | GTGCGTTGACTTTGTTTTGG+TGG | + | chr3_3:68532576-68532595 | Msa0467300:intron | 45.0% |
| CCATAATGAGCAACGAGGTT+GGG | - | chr3_3:68532747-68532766 | None:intergenic | 45.0% | |
| TCCATAATGAGCAACGAGGT+TGG | - | chr3_3:68532748-68532767 | None:intergenic | 45.0% | |
| GGTATCCATAATGAGCAACG+AGG | - | chr3_3:68532752-68532771 | None:intergenic | 45.0% | |
| AGGAAACTGACATGCTGAAC+TGG | + | chr3_3:68532883-68532902 | Msa0467300:three_prime_UTR | 45.0% | |
| CCATCCCTTTGTCGAATGAG+GGG | + | chr3_3:68529313-68529332 | Msa0467300:intron | 50.0% | |
| CCTTCCCCTCATTCGACAAA+GGG | - | chr3_3:68529320-68529339 | None:intergenic | 50.0% | |
| CCTTTGTCGAATGAGGGGAA+GGG | + | chr3_3:68529318-68529337 | Msa0467300:intron | 50.0% | |
| CTTTGTCGAATGAGGGGAAG+GGG | + | chr3_3:68529319-68529338 | Msa0467300:intron | 50.0% | |
| AATGACTACGCCGCACTACT+TGG | + | chr3_3:68529480-68529499 | Msa0467300:intron | 50.0% | |
| ! | GAAGTCGATTCTGAAGGCCA+TGG | + | chr3_3:68529703-68529722 | Msa0467300:CDS | 50.0% |
| CTCATCTTGTTCCCCCTTTC+AGG | + | chr3_3:68529802-68529821 | Msa0467300:intron | 50.0% | |
| GACCTATATGCCAACGGTAG+AGG | + | chr3_3:68529911-68529930 | Msa0467300:CDS | 50.0% | |
| CATGAAATGCCCTCTACCGT+TGG | - | chr3_3:68529924-68529943 | None:intergenic | 50.0% | |
| GGAGGGGACTATGACGTTAA+AGG | + | chr3_3:68530010-68530029 | Msa0467300:CDS | 50.0% | |
| AAATGATGTTGGGGAGCGAG+CGG | - | chr3_3:68530635-68530654 | None:intergenic | 50.0% | |
| CCGTTCGGCAAATGATGTTG+GGG | - | chr3_3:68530644-68530663 | None:intergenic | 50.0% | |
| CCCCAACATCATTTGCCGAA+CGG | + | chr3_3:68530641-68530660 | Msa0467300:intron | 50.0% | |
| GCCGTTCGGCAAATGATGTT+GGG | - | chr3_3:68530645-68530664 | None:intergenic | 50.0% | |
| TGCCGTTCGGCAAATGATGT+TGG | - | chr3_3:68530646-68530665 | None:intergenic | 50.0% | |
| CATGGCAGTTAACTGCCGTT+CGG | - | chr3_3:68530659-68530678 | None:intergenic | 50.0% | |
| GAACGGCAGTTAACTGCCAT+GGG | + | chr3_3:68530658-68530677 | Msa0467300:intron | 50.0% | |
| AACGGCAGTTAACTGCCATG+GGG | + | chr3_3:68530659-68530678 | Msa0467300:intron | 50.0% | |
| !! | TGCAATGAGGACTTGCTGCA+TGG | - | chr3_3:68531501-68531520 | None:intergenic | 50.0% |
| GCAGCAAGTCCTCATTGCAA+TGG | + | chr3_3:68531502-68531521 | Msa0467300:intron | 50.0% | |
| ! | TACAGACTAGGACGTTGGCT+TGG | - | chr3_3:68532080-68532099 | None:intergenic | 50.0% |
| CAGCATACAGACTAGGACGT+TGG | - | chr3_3:68532085-68532104 | None:intergenic | 50.0% | |
| TTGCAGCTTGATCCTAGAGC+CGG | + | chr3_3:68532696-68532715 | Msa0467300:CDS | 50.0% | |
| TCCTTAGCCAGAACCATCAC+CGG | - | chr3_3:68532718-68532737 | None:intergenic | 50.0% | |
| CCCAACCTCGTTGCTCATTA+TGG | + | chr3_3:68532744-68532763 | Msa0467300:three_prime_UTR | 50.0% | |
| CAGAAGCAAGTGAACTCCGC+AGG | + | chr3_3:68528228-68528247 | Msa0467300:CDS | 55.0% | |
| ! | TTATGATGGAACCCTGGCCC+TGG | + | chr3_3:68529262-68529281 | Msa0467300:intron | 55.0% |
| CATAACTCATGCCAGGGCCA+GGG | - | chr3_3:68529276-68529295 | None:intergenic | 55.0% | |
| ACATAACTCATGCCAGGGCC+AGG | - | chr3_3:68529277-68529296 | None:intergenic | 55.0% | |
| CCCCTCATTCGACAAAGGGA+TGG | - | chr3_3:68529316-68529335 | None:intergenic | 55.0% | |
| CCCTTTGTCGAATGAGGGGA+AGG | + | chr3_3:68529317-68529336 | Msa0467300:intron | 55.0% | |
| CCCTTCCCCTCATTCGACAA+AGG | - | chr3_3:68529321-68529340 | None:intergenic | 55.0% | |
| ACAGCCAACGCCAAGTAGTG+CGG | - | chr3_3:68529493-68529512 | None:intergenic | 55.0% | |
| GCCCTCTACCGTTGGCATAT+AGG | - | chr3_3:68529916-68529935 | None:intergenic | 55.0% | |
| !!! | AACTGCCGCTGGGGGTATTT+TGG | - | chr3_3:68530607-68530626 | None:intergenic | 55.0% |
| CGAACGGCAGTTAACTGCCA+TGG | + | chr3_3:68530657-68530676 | Msa0467300:intron | 55.0% | |
| ACGGCAGTTAACTGCCATGG+GGG | + | chr3_3:68530660-68530679 | Msa0467300:intron | 55.0% | |
| CTTGATCCTAGAGCCGGTGA+TGG | + | chr3_3:68532702-68532721 | Msa0467300:CDS | 55.0% | |
| TACGCCGCACTACTTGGCGT+TGG | + | chr3_3:68529486-68529505 | Msa0467300:intron | 60.0% | |
| AGCGGCAGTTAACTGCCGCT+GGG | - | chr3_3:68530617-68530636 | None:intergenic | 60.0% | |
| !! | CCAGAACCATCACCGGCTCT+AGG | - | chr3_3:68532711-68532730 | None:intergenic | 60.0% |
| ! | CCTAGAGCCGGTGATGGTTC+TGG | + | chr3_3:68532708-68532727 | Msa0467300:CDS | 60.0% |
| !! | GCCGGTGATGGTTCTGGCTA+AGG | + | chr3_3:68532714-68532733 | Msa0467300:CDS | 60.0% |
| CGGCAGTTAACTGCCGCTGG+GGG | - | chr3_3:68530615-68530634 | None:intergenic | 65.0% | |
| GCGGCAGTTAACTGCCGCTG+GGG | - | chr3_3:68530616-68530635 | None:intergenic | 65.0% | |
| GAGCGGCAGTTAACTGCCGC+TGG | - | chr3_3:68530618-68530637 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 68528160 | 68532980 | 68528160 | ID=Msa0467300;Name=Msa0467300 |
| chr3_3 | mRNA | 68528160 | 68532980 | 68528160 | ID=Msa0467300-mRNA-1;Parent=Msa0467300;Name=Msa0467300-mRNA-1;_AED=0.08;_eAED=0.08;_QI=64|0.91|0.92|1|0.75|0.69|13|224|386 |
| chr3_3 | exon | 68528160 | 68528249 | 68528160 | ID=Msa0467300-mRNA-1:exon:15873;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68528339 | 68528435 | 68528339 | ID=Msa0467300-mRNA-1:exon:15874;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68528528 | 68528591 | 68528528 | ID=Msa0467300-mRNA-1:exon:15875;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68528672 | 68528773 | 68528672 | ID=Msa0467300-mRNA-1:exon:15876;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68528867 | 68528931 | 68528867 | ID=Msa0467300-mRNA-1:exon:15877;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68529391 | 68529471 | 68529391 | ID=Msa0467300-mRNA-1:exon:15878;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68529671 | 68529726 | 68529671 | ID=Msa0467300-mRNA-1:exon:15879;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68529824 | 68530040 | 68529824 | ID=Msa0467300-mRNA-1:exon:15880;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68531326 | 68531381 | 68531326 | ID=Msa0467300-mRNA-1:exon:15881;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68531506 | 68531601 | 68531506 | ID=Msa0467300-mRNA-1:exon:15882;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68531696 | 68531873 | 68531696 | ID=Msa0467300-mRNA-1:exon:15883;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68532612 | 68532813 | 68532612 | ID=Msa0467300-mRNA-1:exon:15884;Parent=Msa0467300-mRNA-1 |
| chr3_3 | exon | 68532836 | 68532980 | 68532836 | ID=Msa0467300-mRNA-1:exon:15885;Parent=Msa0467300-mRNA-1 |
| chr3_3 | five_prime_UTR | 68528160 | 68528223 | 68528160 | ID=Msa0467300-mRNA-1:five_prime_utr;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68528224 | 68528249 | 68528224 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68528339 | 68528435 | 68528339 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68528528 | 68528591 | 68528528 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68528672 | 68528773 | 68528672 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68528867 | 68528931 | 68528867 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68529391 | 68529471 | 68529391 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68529671 | 68529726 | 68529671 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68529824 | 68530040 | 68529824 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68531326 | 68531381 | 68531326 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68531506 | 68531601 | 68531506 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68531696 | 68531873 | 68531696 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | CDS | 68532612 | 68532734 | 68532612 | ID=Msa0467300-mRNA-1:cds;Parent=Msa0467300-mRNA-1 |
| chr3_3 | three_prime_UTR | 68532735 | 68532813 | 68532735 | ID=Msa0467300-mRNA-1:three_prime_utr;Parent=Msa0467300-mRNA-1 |
| chr3_3 | three_prime_UTR | 68532836 | 68532980 | 68532836 | ID=Msa0467300-mRNA-1:three_prime_utr;Parent=Msa0467300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
