AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094120 MtrunA17_Chr2g0332091 90.270 370 31 1 1 370 1 365 0.0 684
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094120 AT1G80420.2 51.872 374 145 10 1 364 1 349 9.09e-117 343
Msa0094120 AT1G80420.3 51.872 374 145 10 1 364 1 349 9.09e-117 343
Msa0094120 AT1G80420.5 51.872 374 145 10 1 364 1 349 9.09e-117 343
Msa0094120 AT1G80420.1 51.872 374 145 10 1 364 1 349 9.09e-117 343
Msa0094120 AT1G80420.4 50.949 369 144 9 1 364 1 337 1.96e-110 327

Find 92 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATGGTCACGGAAATTT+TGG 0.168059 1_2:+77221029 Msa0094120:CDS
TGTCGAAACTTGGGAGTATT+TGG 0.171012 1_2:-77221742 None:intergenic
TGTTGAGGAGCTTGCAAAAT+TGG 0.254184 1_2:+77224893 Msa0094120:CDS
CTTCTTCTTGTTCTTTGTTT+CGG 0.263701 1_2:-77220693 None:intergenic
GGTGAGAAATCCAGTGAAAT+TGG 0.267428 1_2:+77221077 Msa0094120:CDS
TAGTTTGGTTTGCACAATTT+TGG 0.268602 1_2:+77225233 Msa0094120:three_prime_UTR
TTCGGCGCTGTGTTTGATTT+TGG 0.271414 1_2:-77220675 None:intergenic
CTGATTGAACTGGTTTGTTT+AGG 0.274195 1_2:+77225197 Msa0094120:three_prime_UTR
TTTACGAGGAAGAACTAAAT+AGG 0.286647 1_2:+77224988 Msa0094120:CDS
GAACTCTAATTGCACTCTTT+TGG 0.288941 1_2:+77221708 Msa0094120:CDS
TTCTGACTTCAACAAGCTTA+TGG 0.294131 1_2:+77221148 Msa0094120:CDS
TGTATGCAGTGTATTGTCTT+AGG 0.324617 1_2:-77225265 None:intergenic
AGCTTCAACTTGTCGAAACT+TGG 0.336320 1_2:-77221752 None:intergenic
TTGAACTTTGGTCTTCTTGT+TGG 0.338177 1_2:-77221105 None:intergenic
GGGATGAAAAGTAGTTAGTT+TGG 0.339333 1_2:+77225218 Msa0094120:three_prime_UTR
ACAAATGCTGCATCTTCTTC+TGG 0.343819 1_2:+77225074 Msa0094120:CDS
TGATTGAACTGGTTTGTTTA+GGG 0.350215 1_2:+77225198 Msa0094120:three_prime_UTR
TTTGTTATCTCACTTGGATC+TGG 0.354921 1_2:-77223943 None:intergenic
GTGCACAAGTCCGAAAATTC+AGG 0.376157 1_2:-77225429 None:intergenic
ATATCTTCCTTTGACATTGA+AGG 0.399325 1_2:-77224936 None:intergenic
TGCAGTCCAGTGCTAGTTTG+TGG 0.400514 1_2:-77224959 None:intergenic
ATGGAAGTAGTCTCCTTTGA+AGG 0.419702 1_2:-77223418 None:intergenic
GAGGTCGCGTGCTATGGAAA+TGG 0.420876 1_2:+77221663 Msa0094120:CDS
GTTGGAAAGTCAAGAAGAAA+AGG 0.430535 1_2:+77223639 Msa0094120:CDS
TTAAATTTAACCAGGACATT+GGG 0.434931 1_2:+77224835 Msa0094120:intron
CCATGATGGAAGGTTTCTCT+TGG 0.438435 1_2:-77220991 None:intergenic
CAATTTCAACGAGTTTCCTC+TGG 0.440206 1_2:-77222726 None:intergenic
GAATAAAACAATTCAGTGGT+TGG 0.443870 1_2:+77223621 Msa0094120:CDS
CATCTTGAGGTCGCGTGCTA+TGG 0.453790 1_2:+77221657 Msa0094120:CDS
GTTAAATTTAACCAGGACAT+TGG 0.458466 1_2:+77224834 Msa0094120:intron
CGACAAGTTGAAGCTGATTG+TGG 0.469462 1_2:+77221760 Msa0094120:CDS
TCACAGGTGACACATCTTAG+AGG 0.470456 1_2:-77225171 None:intergenic
TCACCACCTTCATCCAAAGT+TGG 0.472003 1_2:-77221059 None:intergenic
GATAGTTACCTTATGCATGC+TGG 0.472246 1_2:+77222748 Msa0094120:CDS
GAAGGCTCAAAGCATTTCCT+AGG 0.473486 1_2:-77223568 None:intergenic
AAAGTTCAAAATGAAAATGC+TGG 0.480138 1_2:+77221119 Msa0094120:CDS
AGGTCGCGTGCTATGGAAAT+GGG 0.481408 1_2:+77221664 Msa0094120:CDS
GTGAGAAATCCAGTGAAATT+GGG 0.485864 1_2:+77221078 Msa0094120:CDS
AACAGACTAATCAACCAAAC+AGG 0.486202 1_2:+77220716 Msa0094120:five_prime_UTR
GTTGGAAGACCCAATTTCAC+TGG 0.493771 1_2:-77221087 None:intergenic
ATGGTTTCCCAGCATGCATA+AGG 0.493889 1_2:-77222756 None:intergenic
CCTGTGAATGCTGATTGAAC+TGG 0.494727 1_2:+77225187 Msa0094120:exon
TTGTGGAACCATTGTATCAA+AGG 0.498296 1_2:+77221777 Msa0094120:CDS
TGTGGTTTGTGGGGTACAGA+TGG 0.499919 1_2:-77223376 None:intergenic
GAAAAGACATTGACGATCCT+AGG 0.500018 1_2:+77223551 Msa0094120:CDS
AAACCACAAAAGCATGTTGA+AGG 0.502946 1_2:+77223391 Msa0094120:CDS
GCCCACTTCTTCACTTCAGA+AGG 0.503953 1_2:-77223586 None:intergenic
ATAGTTACCTTATGCATGCT+GGG 0.506945 1_2:+77222749 Msa0094120:CDS
GACCTCAAGATGCCACGCTC+CGG 0.520624 1_2:-77221646 None:intergenic
AAGACAATACACTGCATACA+AGG 0.522180 1_2:+77225268 Msa0094120:three_prime_UTR
AGATATCCACAAACTAGCAC+TGG 0.527248 1_2:+77224953 Msa0094120:CDS
ATTCTTACCTCGAGTTGTTG+AGG 0.540660 1_2:+77224878 Msa0094120:CDS
ATCCGGAGCGTGGCATCTTG+AGG 0.545472 1_2:+77221644 Msa0094120:CDS
CAAAGATAAATGAAGAACAT+AGG 0.545893 1_2:+77225036 Msa0094120:CDS
GAGCAGAGTATAAGCAGGAC+TGG 0.547595 1_2:+77221686 Msa0094120:CDS
GCTGGGAAACCATGGCGTAA+AGG 0.547805 1_2:+77222766 Msa0094120:CDS
TTGAAGTCATCCATGATGGA+AGG 0.549060 1_2:-77221001 None:intergenic
GCTTCAACTTGTCGAAACTT+GGG 0.550803 1_2:-77221751 None:intergenic
CCAAGAGAAACCTTCCATCA+TGG 0.554767 1_2:+77220991 Msa0094120:CDS
AAGAGACCAACTTTGGATGA+AGG 0.555473 1_2:+77221053 Msa0094120:CDS
AGCCTTCTGAAGTGAAGAAG+TGG 0.556085 1_2:+77223584 Msa0094120:CDS
GATCTACCTCCTTTACGCCA+TGG 0.556671 1_2:-77222775 None:intergenic
CAATAAACCTTCAATGTCAA+AGG 0.558692 1_2:+77224929 Msa0094120:CDS
CTTGCAAAATTGGATGTTGT+GGG 0.560366 1_2:+77224903 Msa0094120:CDS
CAAAGCAGACGTGAGCTGCA+AGG 0.568223 1_2:-77225350 None:intergenic
GCTTGCAAAATTGGATGTTG+TGG 0.569859 1_2:+77224902 Msa0094120:CDS
AGAGGCAAGTCTCATAGACC+TGG 0.570930 1_2:-77225292 None:intergenic
TTGGGAGAGTAACTGAGGAC+TGG 0.572129 1_2:+77224853 Msa0094120:CDS
AGGATAAAGTCTTATATGCA+AGG 0.572773 1_2:-77225151 None:intergenic
TGTTGAAGGAGAGCCTTCAA+AGG 0.574537 1_2:+77223405 Msa0094120:CDS
GACTACTTCCATAAAATCAA+AGG 0.576252 1_2:+77223429 Msa0094120:CDS
ATGACTTCAAAAGAAGATGA+TGG 0.581741 1_2:+77221014 Msa0094120:CDS
CCAGTTCAATCAGCATTCAC+AGG 0.584788 1_2:-77225187 None:intergenic
TGATGATACAATCGAGATGA+CGG 0.585128 1_2:+77225115 Msa0094120:CDS
TAATGAATGAATTGTTGTGA+AGG 0.585755 1_2:-77220648 None:intergenic
TCCGAACCAGGTGTGGAGGG+TGG 0.587826 1_2:-77225510 None:intergenic
ATTTGAATAAAACAATTCAG+TGG 0.592039 1_2:+77223617 Msa0094120:CDS
GCCTTCTGAAGTGAAGAAGT+GGG 0.595508 1_2:+77223585 Msa0094120:CDS
TGCAAGAGTGTTACAGCCAG+AGG 0.601480 1_2:+77222710 Msa0094120:CDS
ATACACTGCATACAAGGCCC+AGG 0.601757 1_2:+77225274 Msa0094120:three_prime_UTR
AGATCACATGAAGTCAATGA+AGG 0.603097 1_2:+77222793 Msa0094120:CDS
AATGGGAGCAGAGTATAAGC+AGG 0.603134 1_2:+77221681 Msa0094120:CDS
GCAAGCTCCTCAACAACTCG+AGG 0.615189 1_2:-77224885 None:intergenic
TTATGCATGCTGGGAAACCA+TGG 0.623179 1_2:+77222758 Msa0094120:CDS
TCAAAAGAAGATGATGGTCA+CGG 0.624811 1_2:+77221020 Msa0094120:CDS
GGGAAACCATGGCGTAAAGG+AGG 0.628797 1_2:+77222769 Msa0094120:CDS
AGATGCCATATGTTCTCTCG+AGG 0.652619 1_2:+77223999 Msa0094120:CDS
AGACCAACTTTGGATGAAGG+TGG 0.656003 1_2:+77221056 Msa0094120:CDS
GAGGCAAGTCTCATAGACCT+GGG 0.665165 1_2:-77225291 None:intergenic
GTGAGCTGCAAGGCTAACAA+AGG 0.669542 1_2:-77225340 None:intergenic
GGACATTGGGAGAGTAACTG+AGG 0.703411 1_2:+77224848 Msa0094120:intron
GGACTGCAAATGTATTTACG+AGG 0.711362 1_2:+77224974 Msa0094120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATAATTTGAGAAAAA+TGG + chr1_2:77223478-77223497 Msa0094120:intron 10.0%
!!! ATTTTTTTAACAAATGAATT+TGG - chr1_2:77223788-77223807 None:intergenic 10.0%
!! TAAAAAAAAAAAAACCTGTT+TGG - chr1_2:77220733-77220752 None:intergenic 15.0%
!! TAATTGATTAAGTTTATGTT+TGG + chr1_2:77221171-77221190 Msa0094120:intron 15.0%
!!! TAGTTTCAATTTTAATTCTA+CGG - chr1_2:77222087-77222106 None:intergenic 15.0%
!!! AAAGAAAAAAATGTTGTTTT+TGG + chr1_2:77223050-77223069 Msa0094120:intron 15.0%
!! CACTTATTTATATATATCTT+TGG - chr1_2:77223215-77223234 None:intergenic 15.0%
!!! AAAAAGTTAATTTTAAACAG+AGG - chr1_2:77225313-77225332 None:intergenic 15.0%
!!! TTTTTTTTGTACTTAACTTT+GGG + chr1_2:77225399-77225418 Msa0094120:three_prime_UTR 15.0%
!! AGGTTATTAATTCATTAAAC+TGG + chr1_2:77221576-77221595 Msa0094120:intron 20.0%
!!! TAATTCATTAAACTGGTTTA+TGG + chr1_2:77221583-77221602 Msa0094120:intron 20.0%
!!! AATATAAGCAGTACTTTTAA+AGG - chr1_2:77221853-77221872 None:intergenic 20.0%
!!! TAAAAGTACTGCTTATATTT+TGG + chr1_2:77221854-77221873 Msa0094120:intron 20.0%
!!! AGTTTCAATTTTAATTCTAC+GGG - chr1_2:77222086-77222105 None:intergenic 20.0%
!!! TATAATCTCATTTTTCTTTG+TGG + chr1_2:77222162-77222181 Msa0094120:intron 20.0%
!!! TGCTGTTTTTTTACTAATAT+TGG + chr1_2:77222512-77222531 Msa0094120:intron 20.0%
!!! TGTTTTTTTACTAATATTGG+TGG + chr1_2:77222515-77222534 Msa0094120:intron 20.0%
!!! GTTTTTGTTGACAAAATATA+TGG - chr1_2:77222644-77222663 None:intergenic 20.0%
!!! TGTATCCTTTATTTTGTTTT+TGG + chr1_2:77222673-77222692 Msa0094120:intron 20.0%
!!! GTATCCTTTATTTTGTTTTT+GGG + chr1_2:77222674-77222693 Msa0094120:intron 20.0%
!! AATGTACAATAACTTAAACT+AGG - chr1_2:77222853-77222872 None:intergenic 20.0%
!!! TCAATATATTTTGCAGATAA+TGG - chr1_2:77223109-77223128 None:intergenic 20.0%
!!! AAAGGTCTTTAAGTAATTTT+AGG - chr1_2:77223153-77223172 None:intergenic 20.0%
!!! AAGTTTTAAACACACAAAAA+AGG - chr1_2:77223171-77223190 None:intergenic 20.0%
!! TAAATAAGTGCAAAATTGTA+AGG + chr1_2:77223225-77223244 Msa0094120:intron 20.0%
!! AAATAAGTGCAAAATTGTAA+GGG + chr1_2:77223226-77223245 Msa0094120:intron 20.0%
!!! AACTTTTACCTTTGATTTTA+TGG - chr1_2:77223440-77223459 None:intergenic 20.0%
!! ATAAAATCAAAGGTAAAAGT+TGG + chr1_2:77223439-77223458 Msa0094120:intron 20.0%
!! ACAATCGACAAATAAAATAA+AGG - chr1_2:77223514-77223533 None:intergenic 20.0%
!! ATTTGAATAAAACAATTCAG+TGG + chr1_2:77223617-77223636 Msa0094120:CDS 20.0%
!!! TTGAGAATTTAGTTTTACAT+AGG - chr1_2:77223910-77223929 None:intergenic 20.0%
!!! ATTTAATCATTTTCTTTTCC+TGG + chr1_2:77224083-77224102 Msa0094120:intron 20.0%
!!! TTTAATCATTTTCTTTTCCT+GGG + chr1_2:77224084-77224103 Msa0094120:intron 20.0%
!!! TATTTTACTTGAATGAGAAT+TGG + chr1_2:77224546-77224565 Msa0094120:intron 20.0%
!!! CTTTTTTTTGTACTTAACTT+TGG + chr1_2:77225398-77225417 Msa0094120:three_prime_UTR 20.0%
! TAATGAATGAATTGTTGTGA+AGG - chr1_2:77220651-77220670 None:intergenic 25.0%
!! AGCATTTTCATTTTGAACTT+TGG - chr1_2:77221120-77221139 None:intergenic 25.0%
! AAAGTTCAAAATGAAAATGC+TGG + chr1_2:77221119-77221138 Msa0094120:CDS 25.0%
! TAAGTTTATGTTTGGTATCA+CGG + chr1_2:77221179-77221198 Msa0094120:intron 25.0%
!! TTGTAGCTTTTACAAAATCA+CGG - chr1_2:77221303-77221322 None:intergenic 25.0%
! CATGTAACAAGTTAAAAGAA+AGG - chr1_2:77221809-77221828 None:intergenic 25.0%
!!! TTTAACTTGTTACATGTGAA+TGG + chr1_2:77221813-77221832 Msa0094120:intron 25.0%
! ATCTATGTCTTATACTTCTT+AGG + chr1_2:77221911-77221930 Msa0094120:intron 25.0%
! GAATAACAAACCATACAATA+GGG - chr1_2:77221940-77221959 None:intergenic 25.0%
! AGAATAACAAACCATACAAT+AGG - chr1_2:77221941-77221960 None:intergenic 25.0%
!!! GTCATTTTATTAATGTCTCA+TGG + chr1_2:77221999-77222018 Msa0094120:intron 25.0%
!! AAATTAGGGATATTTTGTCT+TGG + chr1_2:77222337-77222356 Msa0094120:intron 25.0%
! GTTAGAAAAGAAAAGAACAA+CGG - chr1_2:77222414-77222433 None:intergenic 25.0%
! ACAAAATAAAGGATACATCA+TGG - chr1_2:77222670-77222689 None:intergenic 25.0%
! AACACCCAAAAACAAAATAA+AGG - chr1_2:77222681-77222700 None:intergenic 25.0%
!!! TTATTTTGTTTTTGGGTGTT+AGG + chr1_2:77222681-77222700 Msa0094120:intron 25.0%
! TTGTATGCTTGTAAATTGAT+AGG + chr1_2:77222826-77222845 Msa0094120:intron 25.0%
! TGTTATATACGAAATGATTG+AGG - chr1_2:77222897-77222916 None:intergenic 25.0%
!!! TCTTTTCTCTCTTATTTTTC+TGG + chr1_2:77223008-77223027 Msa0094120:intron 25.0%
!! TATATCTTTGGTGATAAAGA+TGG - chr1_2:77223203-77223222 None:intergenic 25.0%
!! TTCTAACTTCATTTTGTTCA+AGG + chr1_2:77223871-77223890 Msa0094120:intron 25.0%
! AAAACTAAAATCTACATGCA+AGG - chr1_2:77224133-77224152 None:intergenic 25.0%
! GTTGTAAAAATTAAGTGCAA+AGG - chr1_2:77224449-77224468 None:intergenic 25.0%
!! TTGCACTTAATTTTTACAAC+AGG + chr1_2:77224449-77224468 Msa0094120:intron 25.0%
!! ACTTAATTTTTACAACAGGA+TGG + chr1_2:77224453-77224472 Msa0094120:intron 25.0%
! TTCAAGTAAAATATCCAGTA+TGG - chr1_2:77224539-77224558 None:intergenic 25.0%
! TTGTACAGTCCATTTATATT+TGG + chr1_2:77224693-77224712 Msa0094120:intron 25.0%
! TGTGTAAAGCCAAATATAAA+TGG - chr1_2:77224705-77224724 None:intergenic 25.0%
! TTAAAGTAAGAATACCAAGA+TGG - chr1_2:77224743-77224762 None:intergenic 25.0%
!! TCTTACTTTAAGTTTCAATG+TGG + chr1_2:77224752-77224771 Msa0094120:intron 25.0%
!! CTTACTTTAAGTTTCAATGT+GGG + chr1_2:77224753-77224772 Msa0094120:intron 25.0%
!! TTACTTTAAGTTTCAATGTG+GGG + chr1_2:77224754-77224773 Msa0094120:intron 25.0%
! CTGTTATATCAAGGATTAAA+TGG + chr1_2:77224777-77224796 Msa0094120:intron 25.0%
!! TTGTCTTGTTAAATTTAACC+AGG + chr1_2:77224827-77224846 Msa0094120:intron 25.0%
! TTAAATTTAACCAGGACATT+GGG + chr1_2:77224835-77224854 Msa0094120:intron 25.0%
! CAAAGATAAATGAAGAACAT+AGG + chr1_2:77225036-77225055 Msa0094120:CDS 25.0%
! CTTCTTCTTGTTCTTTGTTT+CGG - chr1_2:77220696-77220715 None:intergenic 30.0%
ACTACAAAAACCTGCATTTA+GGG - chr1_2:77220905-77220924 None:intergenic 30.0%
!! ACTTGGGTGTTTTTCAAAAT+TGG + chr1_2:77220928-77220947 Msa0094120:five_prime_UTR 30.0%
ATGACTTCAAAAGAAGATGA+TGG + chr1_2:77221014-77221033 Msa0094120:CDS 30.0%
! CTGTACCTTTTACAAAATCA+CGG - chr1_2:77221358-77221377 None:intergenic 30.0%
GTTTCTTATTAGTGCATGTT+TGG - chr1_2:77221505-77221524 None:intergenic 30.0%
!! GTTTGCATTGTTGTTTAATG+AGG + chr1_2:77221556-77221575 Msa0094120:intron 30.0%
GGAAAAAACCTTTGATACAA+TGG - chr1_2:77221788-77221807 None:intergenic 30.0%
!! GTACTGCTTATATTTTGGAA+AGG + chr1_2:77221859-77221878 Msa0094120:intron 30.0%
!! TATTTTGGAAAGGATAGAAG+TGG + chr1_2:77221869-77221888 Msa0094120:intron 30.0%
GTATAAGACATAGATTCTTG+AGG - chr1_2:77221906-77221925 None:intergenic 30.0%
!! TTTGTTATTCTCACTACTTG+TGG + chr1_2:77221950-77221969 Msa0094120:intron 30.0%
! AGAGATTAGTTGAGACATAA+TGG + chr1_2:77222294-77222313 Msa0094120:intron 30.0%
TTTCCTCAATGAAGGAAATT+AGG + chr1_2:77222322-77222341 Msa0094120:intron 30.0%
TTCCTCAATGAAGGAAATTA+GGG + chr1_2:77222323-77222342 Msa0094120:intron 30.0%
! AGACATTAAGTTTTTGCTTG+AGG + chr1_2:77222369-77222388 Msa0094120:intron 30.0%
! TTAAGTTTTTGCTTGAGGAA+AGG + chr1_2:77222374-77222393 Msa0094120:intron 30.0%
GTCTGGATTATGTAACAAAT+AGG - chr1_2:77222490-77222509 None:intergenic 30.0%
!!! GCTTACCACTTTTTAGATTT+TGG + chr1_2:77222572-77222591 Msa0094120:intron 30.0%
!!! TACCACTTTTTAGATTTTGG+TGG + chr1_2:77222575-77222594 Msa0094120:intron 30.0%
!!! ACCACTTTTTAGATTTTGGT+GGG + chr1_2:77222576-77222595 Msa0094120:intron 30.0%
!!! TAGTAACGTTACACTGATTT+TGG + chr1_2:77222606-77222625 Msa0094120:intron 30.0%
GGAAATATTAGATGTGAAAC+TGG - chr1_2:77223323-77223342 None:intergenic 30.0%
GACTACTTCCATAAAATCAA+AGG + chr1_2:77223429-77223448 Msa0094120:CDS 30.0%
! ATTGTTTGCTACATATTCCA+GGG + chr1_2:77223529-77223548 Msa0094120:intron 30.0%
GAATAAAACAATTCAGTGGT+TGG + chr1_2:77223621-77223640 Msa0094120:CDS 30.0%
! AATGTTTCTGTTCATTCTAG+AGG + chr1_2:77223689-77223708 Msa0094120:intron 30.0%
!! TGCTTCTAAAGCATTTATCA+CGG - chr1_2:77223837-77223856 None:intergenic 30.0%
!! TGATAAATGCTTTAGAAGCA+AGG + chr1_2:77223837-77223856 Msa0094120:intron 30.0%
!!! GCTATTTTTGTTATCTCACT+TGG - chr1_2:77223952-77223971 None:intergenic 30.0%
ATAACAAAAATAGCTGCAGA+AGG + chr1_2:77223958-77223977 Msa0094120:CDS 30.0%
TAACAAAAATAGCTGCAGAA+GGG + chr1_2:77223959-77223978 Msa0094120:CDS 30.0%
! AAACTGATTGTGACTTGTAT+TGG + chr1_2:77224046-77224065 Msa0094120:intron 30.0%
ATCAGACTAATAATAGATGC+AGG + chr1_2:77224189-77224208 Msa0094120:intron 30.0%
TCAGACTAATAATAGATGCA+GGG + chr1_2:77224190-77224209 Msa0094120:intron 30.0%
AATACATTCCCAAGAAAGAT+AGG - chr1_2:77224277-77224296 None:intergenic 30.0%
! TTCTGGAGAAAACTATGTTA+GGG - chr1_2:77224426-77224445 None:intergenic 30.0%
AAAATTAAGTGCAAAGGTTC+TGG - chr1_2:77224443-77224462 None:intergenic 30.0%
TATAATTAGTCGGCATCATT+AGG - chr1_2:77224500-77224519 None:intergenic 30.0%
! AATGATGCCGACTAATTATA+AGG + chr1_2:77224500-77224519 Msa0094120:intron 30.0%
ATGAGAATTGGCAAATCATT+TGG + chr1_2:77224558-77224577 Msa0094120:intron 30.0%
GACATTGAAGGATATCTTAA+TGG - chr1_2:77224614-77224633 None:intergenic 30.0%
GTTAAATTTAACCAGGACAT+TGG + chr1_2:77224834-77224853 Msa0094120:intron 30.0%
CAATAAACCTTCAATGTCAA+AGG + chr1_2:77224929-77224948 Msa0094120:CDS 30.0%
ATATCTTCCTTTGACATTGA+AGG - chr1_2:77224939-77224958 None:intergenic 30.0%
TTTACGAGGAAGAACTAAAT+AGG + chr1_2:77224988-77225007 Msa0094120:CDS 30.0%
! AGGATAAAGTCTTATATGCA+AGG - chr1_2:77225154-77225173 None:intergenic 30.0%
!! TGATTGAACTGGTTTGTTTA+GGG + chr1_2:77225198-77225217 Msa0094120:three_prime_UTR 30.0%
!!! TAGTTTGGTTTGCACAATTT+TGG + chr1_2:77225233-77225252 Msa0094120:three_prime_UTR 30.0%
! TTTTTGTACTTAACTTTGGG+AGG + chr1_2:77225402-77225421 Msa0094120:three_prime_UTR 30.0%
AACAGACTAATCAACCAAAC+AGG + chr1_2:77220716-77220735 Msa0094120:five_prime_UTR 35.0%
TTTGAATGAACCCTAAATGC+AGG + chr1_2:77220892-77220911 Msa0094120:intron 35.0%
CACTACAAAAACCTGCATTT+AGG - chr1_2:77220906-77220925 None:intergenic 35.0%
! CTAAATGCAGGTTTTTGTAG+TGG + chr1_2:77220904-77220923 Msa0094120:intron 35.0%
!! AGGTTTTTGTAGTGGAACTT+GGG + chr1_2:77220912-77220931 Msa0094120:intron 35.0%
!!! TCTTTTGAAGTCATCCATGA+TGG - chr1_2:77221008-77221027 None:intergenic 35.0%
! TCAAAAGAAGATGATGGTCA+CGG + chr1_2:77221020-77221039 Msa0094120:CDS 35.0%
!! TTTTGGAAAGAGACCAACTT+TGG + chr1_2:77221046-77221065 Msa0094120:CDS 35.0%
GTGAGAAATCCAGTGAAATT+GGG + chr1_2:77221078-77221097 Msa0094120:CDS 35.0%
! TTGAACTTTGGTCTTCTTGT+TGG - chr1_2:77221108-77221127 None:intergenic 35.0%
TTCTGACTTCAACAAGCTTA+TGG + chr1_2:77221148-77221167 Msa0094120:CDS 35.0%
AAGCAGCTTTCGAAAAATCA+CGG - chr1_2:77221232-77221251 None:intergenic 35.0%
! TAGCTTTTACAAAATCACGG+TGG - chr1_2:77221300-77221319 None:intergenic 35.0%
TAAAAGCTACAATGCCAAAG+TGG + chr1_2:77221311-77221330 Msa0094120:intron 35.0%
! TGTCACCGTGATTTTGTAAA+AGG + chr1_2:77221350-77221369 Msa0094120:intron 35.0%
! ACGGAGCTTTTGTAAAATCA+GGG + chr1_2:77221444-77221463 Msa0094120:intron 35.0%
! AAGTAGCAGTTGTGTGTTTT+TGG + chr1_2:77221529-77221548 Msa0094120:intron 35.0%
! AGTAGCAGTTGTGTGTTTTT+GGG + chr1_2:77221530-77221549 Msa0094120:intron 35.0%
! CATTAAACTGGTTTATGGAC+AGG + chr1_2:77221588-77221607 Msa0094120:intron 35.0%
! GAACTCTAATTGCACTCTTT+TGG + chr1_2:77221708-77221727 Msa0094120:CDS 35.0%
TTGTGGAACCATTGTATCAA+AGG + chr1_2:77221777-77221796 Msa0094120:CDS 35.0%
TCTTAGGAATCCCTATTGTA+TGG + chr1_2:77221927-77221946 Msa0094120:intron 35.0%
! TATTAGCTGGTTCAAGTTTG+AGG - chr1_2:77222114-77222133 None:intergenic 35.0%
!! TAATAGCCAAGAAGGTACTA+GGG + chr1_2:77222129-77222148 Msa0094120:intron 35.0%
! TGGTTTTCTTTCCTCAATGA+AGG + chr1_2:77222314-77222333 Msa0094120:intron 35.0%
ATCCCTAATTTCCTTCATTG+AGG - chr1_2:77222328-77222347 None:intergenic 35.0%
AGTAAAAAAACAGCATCGTC+TGG - chr1_2:77222507-77222526 None:intergenic 35.0%
TCCCACCAAAATCTAAAAAG+TGG - chr1_2:77222580-77222599 None:intergenic 35.0%
!!! TTGTTTTTGGGTGTTAGGAT+TGG + chr1_2:77222686-77222705 Msa0094120:intron 35.0%
ATAGTTACCTTATGCATGCT+GGG + chr1_2:77222749-77222768 Msa0094120:CDS 35.0%
AGATCACATGAAGTCAATGA+AGG + chr1_2:77222793-77222812 Msa0094120:CDS 35.0%
AGAAGCCAATTAAGATTGCA+TGG + chr1_2:77222934-77222953 Msa0094120:intron 35.0%
! ATCTAAGATGCAAGTCACAA+AGG - chr1_2:77222969-77222988 None:intergenic 35.0%
ACTCACGCATAAATTTCATG+AGG - chr1_2:77223344-77223363 None:intergenic 35.0%
!! AACATGCTTTTGTGGTTTGT+GGG - chr1_2:77223389-77223408 None:intergenic 35.0%
! AAACCACAAAAGCATGTTGA+AGG + chr1_2:77223391-77223410 Msa0094120:CDS 35.0%
! GATTGTTTGCTACATATTCC+AGG + chr1_2:77223528-77223547 Msa0094120:intron 35.0%
GTTGGAAAGTCAAGAAGAAA+AGG + chr1_2:77223639-77223658 Msa0094120:CDS 35.0%
TAAGCTTTCAGAACTTGCAT+AGG + chr1_2:77223725-77223744 Msa0094120:intron 35.0%
! TTTGTTATCTCACTTGGATC+TGG - chr1_2:77223946-77223965 None:intergenic 35.0%
! TTTTTCCTCGAGAGAACATA+TGG - chr1_2:77224007-77224026 None:intergenic 35.0%
AGCAATTTGCCTATCTTTCT+TGG + chr1_2:77224265-77224284 Msa0094120:intron 35.0%
GCAATTTGCCTATCTTTCTT+GGG + chr1_2:77224266-77224285 Msa0094120:intron 35.0%
ATCCAAGTAGTAAGCAATAC+TGG - chr1_2:77224363-77224382 None:intergenic 35.0%
TGTTAGGGACAAAAAAAGCT+AGG - chr1_2:77224411-77224430 None:intergenic 35.0%
!! GTTCTGGAGAAAACTATGTT+AGG - chr1_2:77224427-77224446 None:intergenic 35.0%
! ACTCAGGCCTTATAATTAGT+CGG - chr1_2:77224510-77224529 None:intergenic 35.0%
CTTGCAAAATTGGATGTTGT+GGG + chr1_2:77224903-77224922 Msa0094120:CDS 35.0%
GAAGAACATAGGAGCAAAAA+TGG + chr1_2:77225047-77225066 Msa0094120:CDS 35.0%
TGATGATACAATCGAGATGA+CGG + chr1_2:77225115-77225134 Msa0094120:CDS 35.0%
!! CTGATTGAACTGGTTTGTTT+AGG + chr1_2:77225197-77225216 Msa0094120:three_prime_UTR 35.0%
GGGATGAAAAGTAGTTAGTT+TGG + chr1_2:77225218-77225237 Msa0094120:three_prime_UTR 35.0%
TGTATGCAGTGTATTGTCTT+AGG - chr1_2:77225268-77225287 None:intergenic 35.0%
AAGACAATACACTGCATACA+AGG + chr1_2:77225268-77225287 Msa0094120:three_prime_UTR 35.0%
! GCGAGTACTAATTTTATCCA+CGG + chr1_2:77225372-77225391 Msa0094120:three_prime_UTR 35.0%
AGTACAAAAAAAAGAGTCCG+TGG - chr1_2:77225392-77225411 None:intergenic 35.0%
!! CAGGTTTTTGTAGTGGAACT+TGG + chr1_2:77220911-77220930 Msa0094120:intron 40.0%
! TTGAAGTCATCCATGATGGA+AGG - chr1_2:77221004-77221023 None:intergenic 40.0%
!! GATGATGGTCACGGAAATTT+TGG + chr1_2:77221029-77221048 Msa0094120:CDS 40.0%
AAGAGACCAACTTTGGATGA+AGG + chr1_2:77221053-77221072 Msa0094120:CDS 40.0%
GGTGAGAAATCCAGTGAAAT+TGG + chr1_2:77221077-77221096 Msa0094120:CDS 40.0%
TTAGTGCGTGTTTGGTATCA+TGG + chr1_2:77221250-77221269 Msa0094120:intron 40.0%
AAAGTGGCTATGCGAAATCA+CGG + chr1_2:77221327-77221346 Msa0094120:intron 40.0%
TTTACAAAAGCTCCGTGCAT+TGG - chr1_2:77221440-77221459 None:intergenic 40.0%
! CACGGAGCTTTTGTAAAATC+AGG + chr1_2:77221443-77221462 Msa0094120:intron 40.0%
! GAGCTTTTGTAAAATCAGGG+TGG + chr1_2:77221447-77221466 Msa0094120:intron 40.0%
! AAACTGGTTTATGGACAGGA+AGG + chr1_2:77221592-77221611 Msa0094120:intron 40.0%
! AGGTGTAGTTTTTGTGCTGT+CGG + chr1_2:77221612-77221631 Msa0094120:CDS 40.0%
!! TGTCGAAACTTGGGAGTATT+TGG - chr1_2:77221745-77221764 None:intergenic 40.0%
GCTTCAACTTGTCGAAACTT+GGG - chr1_2:77221754-77221773 None:intergenic 40.0%
AGCTTCAACTTGTCGAAACT+TGG - chr1_2:77221755-77221774 None:intergenic 40.0%
TTGGAAAGGATAGAAGTGGA+AGG + chr1_2:77221873-77221892 Msa0094120:intron 40.0%
!! CTAATAGCCAAGAAGGTACT+AGG + chr1_2:77222128-77222147 Msa0094120:intron 40.0%
! TAGCGTCAATTACTGACTGT+AGG + chr1_2:77222236-77222255 Msa0094120:intron 40.0%
! TGCTGTAGTGTCTTAGTTTG+CGG + chr1_2:77222263-77222282 Msa0094120:intron 40.0%
TAATCCAAGCCTTTCACTGA+GGG + chr1_2:77222460-77222479 Msa0094120:intron 40.0%
CAATTTCAACGAGTTTCCTC+TGG - chr1_2:77222729-77222748 None:intergenic 40.0%
GATAGTTACCTTATGCATGC+TGG + chr1_2:77222748-77222767 Msa0094120:CDS 40.0%
CAGCTCCATGCAATCTTAAT+TGG - chr1_2:77222942-77222961 None:intergenic 40.0%
!!! TGTTTTTGGAGCAGAATCAC+TGG + chr1_2:77223064-77223083 Msa0094120:intron 40.0%
!! ACATGCTTTTGTGGTTTGTG+GGG - chr1_2:77223388-77223407 None:intergenic 40.0%
! CAACATGCTTTTGTGGTTTG+TGG - chr1_2:77223390-77223409 None:intergenic 40.0%
! TCTCCTTCAACATGCTTTTG+TGG - chr1_2:77223397-77223416 None:intergenic 40.0%
ATGGAAGTAGTCTCCTTTGA+AGG - chr1_2:77223421-77223440 None:intergenic 40.0%
GAAAAGACATTGACGATCCT+AGG + chr1_2:77223551-77223570 Msa0094120:CDS 40.0%
ATGTTCTCTCGAGGAAAAAC+AGG + chr1_2:77224008-77224027 Msa0094120:CDS 40.0%
! TCATTTTCTTTTCCTGGGAG+TGG + chr1_2:77224089-77224108 Msa0094120:intron 40.0%
TTACTTATATTGCCACTCCC+AGG - chr1_2:77224104-77224123 None:intergenic 40.0%
CACCAGTATTGCTTACTACT+TGG + chr1_2:77224358-77224377 Msa0094120:intron 40.0%
AAGCTAGGATGGCAATGATT+AGG - chr1_2:77224396-77224415 None:intergenic 40.0%
AGGGACAAAAAAAGCTAGGA+TGG - chr1_2:77224407-77224426 None:intergenic 40.0%
TCCAGTATGGCTATATACTC+AGG - chr1_2:77224526-77224545 None:intergenic 40.0%
TGTCATTCAGTGTGATGACT+CGG - chr1_2:77224584-77224603 None:intergenic 40.0%
CCAATTGTCAACGACATTGA+AGG - chr1_2:77224626-77224645 None:intergenic 40.0%
CCTTCAATGTCGTTGACAAT+TGG + chr1_2:77224623-77224642 Msa0094120:intron 40.0%
GTAAGAATACCAAGATGGCA+CGG - chr1_2:77224738-77224757 None:intergenic 40.0%
AATGTGGGGCTGTTATATCA+AGG + chr1_2:77224768-77224787 Msa0094120:intron 40.0%
! ATTCTTACCTCGAGTTGTTG+AGG + chr1_2:77224878-77224897 Msa0094120:CDS 40.0%
TGTTGAGGAGCTTGCAAAAT+TGG + chr1_2:77224893-77224912 Msa0094120:CDS 40.0%
GCTTGCAAAATTGGATGTTG+TGG + chr1_2:77224902-77224921 Msa0094120:CDS 40.0%
AGATATCCACAAACTAGCAC+TGG + chr1_2:77224953-77224972 Msa0094120:CDS 40.0%
GGACTGCAAATGTATTTACG+AGG + chr1_2:77224974-77224993 Msa0094120:CDS 40.0%
ACAAATGCTGCATCTTCTTC+TGG + chr1_2:77225074-77225093 Msa0094120:CDS 40.0%
!! TTCGGCGCTGTGTTTGATTT+TGG - chr1_2:77220678-77220697 None:intergenic 45.0%
! CCATGATGGAAGGTTTCTCT+TGG - chr1_2:77220994-77221013 None:intergenic 45.0%
CCAAGAGAAACCTTCCATCA+TGG + chr1_2:77220991-77221010 Msa0094120:CDS 45.0%
AGACCAACTTTGGATGAAGG+TGG + chr1_2:77221056-77221075 Msa0094120:CDS 45.0%
TCACCACCTTCATCCAAAGT+TGG - chr1_2:77221062-77221081 None:intergenic 45.0%
GTTGGAAGACCCAATTTCAC+TGG - chr1_2:77221090-77221109 None:intergenic 45.0%
ACGGTGGCTCAATGTGATTA+TGG - chr1_2:77221213-77221232 None:intergenic 45.0%
CAGCTTTCGAAAAATCACGG+TGG - chr1_2:77221229-77221248 None:intergenic 45.0%
AAAGCTGCTTAGTGCGTGTT+TGG + chr1_2:77221242-77221261 Msa0094120:intron 45.0%
GTGATTTCGCATAGCCACTT+TGG - chr1_2:77221328-77221347 None:intergenic 45.0%
TGTAAAATCAGGGTGGTTCG+CGG + chr1_2:77221454-77221473 Msa0094120:intron 45.0%
! GGTGTAGTTTTTGTGCTGTC+GGG + chr1_2:77221613-77221632 Msa0094120:CDS 45.0%
AATGGGAGCAGAGTATAAGC+AGG + chr1_2:77221681-77221700 Msa0094120:CDS 45.0%
! CGACAAGTTGAAGCTGATTG+TGG + chr1_2:77221760-77221779 Msa0094120:CDS 45.0%
TATTCTCACTACTTGTGGCG+TGG + chr1_2:77221955-77221974 Msa0094120:intron 45.0%
ATTCTCACTACTTGTGGCGT+GGG + chr1_2:77221956-77221975 Msa0094120:intron 45.0%
GAACCAGCTAATAGCCAAGA+AGG + chr1_2:77222121-77222140 Msa0094120:intron 45.0%
GTACCTTCTTGGCTATTAGC+TGG - chr1_2:77222127-77222146 None:intergenic 45.0%
!! TGTAGTGTCTTAGTTTGCGG+TGG + chr1_2:77222266-77222285 Msa0094120:intron 45.0%
CTAATCCAAGCCTTTCACTG+AGG + chr1_2:77222459-77222478 Msa0094120:intron 45.0%
AATCCAAGCCTTTCACTGAG+GGG + chr1_2:77222461-77222480 Msa0094120:intron 45.0%
ATAGGATTCCCCTCAGTGAA+AGG - chr1_2:77222472-77222491 None:intergenic 45.0%
ATGGTTTCCCAGCATGCATA+AGG - chr1_2:77222759-77222778 None:intergenic 45.0%
TTATGCATGCTGGGAAACCA+TGG + chr1_2:77222758-77222777 Msa0094120:CDS 45.0%
TGTTGAAGGAGAGCCTTCAA+AGG + chr1_2:77223405-77223424 Msa0094120:CDS 45.0%
! GATCGTCAATGTCTTTTCCC+TGG - chr1_2:77223549-77223568 None:intergenic 45.0%
! GAAGGCTCAAAGCATTTCCT+AGG - chr1_2:77223571-77223590 None:intergenic 45.0%
!! AGCCTTCTGAAGTGAAGAAG+TGG + chr1_2:77223584-77223603 Msa0094120:CDS 45.0%
!! GCCTTCTGAAGTGAAGAAGT+GGG + chr1_2:77223585-77223604 Msa0094120:CDS 45.0%
AGATGCCATATGTTCTCTCG+AGG + chr1_2:77223999-77224018 Msa0094120:CDS 45.0%
GCCTGAGTATATAGCCATAC+TGG + chr1_2:77224522-77224541 Msa0094120:intron 45.0%
TCACAGGTGACACATCTTAG+AGG - chr1_2:77225174-77225193 None:intergenic 45.0%
CCAGTTCAATCAGCATTCAC+AGG - chr1_2:77225190-77225209 None:intergenic 45.0%
! CCTGTGAATGCTGATTGAAC+TGG + chr1_2:77225187-77225206 Msa0094120:exon 45.0%
!!! GGGAGGAGTACCTGAATTTT+CGG + chr1_2:77225419-77225438 Msa0094120:three_prime_UTR 45.0%
GTGCACAAGTCCGAAAATTC+AGG - chr1_2:77225432-77225451 None:intergenic 45.0%
!!! ATTTTTCAAATATTATTTAT+TGG + chr1_2:77222543-77222562 Msa0094120:intron 5.0%
! CCGTGCATTGGTATCATGGT+GGG - chr1_2:77221428-77221447 None:intergenic 50.0%
CCCACCATGATACCAATGCA+CGG + chr1_2:77221425-77221444 Msa0094120:intron 50.0%
! TCCGTGCATTGGTATCATGG+TGG - chr1_2:77221429-77221448 None:intergenic 50.0%
! AGCTCCGTGCATTGGTATCA+TGG - chr1_2:77221432-77221451 None:intergenic 50.0%
!! GCTGTCGGGTTTTGTGAATC+CGG + chr1_2:77221627-77221646 Msa0094120:CDS 50.0%
AGGTCGCGTGCTATGGAAAT+GGG + chr1_2:77221664-77221683 Msa0094120:CDS 50.0%
GAGCAGAGTATAAGCAGGAC+TGG + chr1_2:77221686-77221705 Msa0094120:CDS 50.0%
GAGATGCCCTAGTACCTTCT+TGG - chr1_2:77222138-77222157 None:intergenic 50.0%
ATTCCCCTCAGTGAAAGGCT+TGG - chr1_2:77222467-77222486 None:intergenic 50.0%
!! TGCAAGAGTGTTACAGCCAG+AGG + chr1_2:77222710-77222729 Msa0094120:CDS 50.0%
GATCTACCTCCTTTACGCCA+TGG - chr1_2:77222778-77222797 None:intergenic 50.0%
GAGGTTGGCAAACATGCATG+TGG - chr1_2:77223271-77223290 None:intergenic 50.0%
GTGAAACTGGACCGAGACAA+CGG - chr1_2:77223310-77223329 None:intergenic 50.0%
! TGTGGTTTGTGGGGTACAGA+TGG - chr1_2:77223379-77223398 None:intergenic 50.0%
GCCCACTTCTTCACTTCAGA+AGG - chr1_2:77223589-77223608 None:intergenic 50.0%
CTCACTTGGATCTGGCTGAA+AGG - chr1_2:77223938-77223957 None:intergenic 50.0%
GTCTGAATTCCGTGCCATCT+TGG + chr1_2:77224726-77224745 Msa0094120:intron 50.0%
CAGTTACTCTCCCAATGTCC+TGG - chr1_2:77224848-77224867 None:intergenic 50.0%
GGACATTGGGAGAGTAACTG+AGG + chr1_2:77224848-77224867 Msa0094120:intron 50.0%
TTGGGAGAGTAACTGAGGAC+TGG + chr1_2:77224853-77224872 Msa0094120:CDS 50.0%
! TGCAGTCCAGTGCTAGTTTG+TGG - chr1_2:77224962-77224981 None:intergenic 50.0%
ATACACTGCATACAAGGCCC+AGG + chr1_2:77225274-77225293 Msa0094120:three_prime_UTR 50.0%
GAGGCAAGTCTCATAGACCT+GGG - chr1_2:77225294-77225313 None:intergenic 50.0%
AGAGGCAAGTCTCATAGACC+TGG - chr1_2:77225295-77225314 None:intergenic 50.0%
GTGAGCTGCAAGGCTAACAA+AGG - chr1_2:77225343-77225362 None:intergenic 50.0%
AGGGTGGTTCGCGGTGATTT+GGG + chr1_2:77221463-77221482 Msa0094120:intron 55.0%
!! GGTTTTGTGAATCCGGAGCG+TGG + chr1_2:77221634-77221653 Msa0094120:CDS 55.0%
CATCTTGAGGTCGCGTGCTA+TGG + chr1_2:77221657-77221676 Msa0094120:CDS 55.0%
GAGGTCGCGTGCTATGGAAA+TGG + chr1_2:77221663-77221682 Msa0094120:CDS 55.0%
GCTGGGAAACCATGGCGTAA+AGG + chr1_2:77222766-77222785 Msa0094120:CDS 55.0%
GGGAAACCATGGCGTAAAGG+AGG + chr1_2:77222769-77222788 Msa0094120:CDS 55.0%
GAGACAACGGTGTGGGACTT+GGG - chr1_2:77223297-77223316 None:intergenic 55.0%
CAAGTCCCACACCGTTGTCT+CGG + chr1_2:77223296-77223315 Msa0094120:intron 55.0%
GCAAGCTCCTCAACAACTCG+AGG - chr1_2:77224888-77224907 None:intergenic 55.0%
CAAAGCAGACGTGAGCTGCA+AGG - chr1_2:77225353-77225372 None:intergenic 55.0%
CAGGGTGGTTCGCGGTGATT+TGG + chr1_2:77221462-77221481 Msa0094120:intron 60.0%
ATCCGGAGCGTGGCATCTTG+AGG + chr1_2:77221644-77221663 Msa0094120:CDS 60.0%
GACCTCAAGATGCCACGCTC+CGG - chr1_2:77221649-77221668 None:intergenic 60.0%
GTGGGACTTGGGTAGGAGGT+TGG - chr1_2:77223286-77223305 None:intergenic 60.0%
CAACGGTGTGGGACTTGGGT+AGG - chr1_2:77223293-77223312 None:intergenic 60.0%
CGAGACAACGGTGTGGGACT+TGG - chr1_2:77223298-77223317 None:intergenic 60.0%
CTGGACCGAGACAACGGTGT+GGG - chr1_2:77223304-77223323 None:intergenic 60.0%
ACTGGACCGAGACAACGGTG+TGG - chr1_2:77223305-77223324 None:intergenic 60.0%
CGGTGTGGGACTTGGGTAGG+AGG - chr1_2:77223290-77223309 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77220643 77225517 77220643 ID=Msa0094120;Name=Msa0094120
chr1_2 mRNA 77220643 77225517 77220643 ID=Msa0094120-mRNA-1;Parent=Msa0094120;Name=Msa0094120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=165|1|1|1|0.85|0.75|8|324|370
chr1_2 exon 77220643 77220737 77220643 ID=Msa0094120-mRNA-1:exon:27319;Parent=Msa0094120-mRNA-1
chr1_2 exon 77220914 77221169 77220914 ID=Msa0094120-mRNA-1:exon:27320;Parent=Msa0094120-mRNA-1
chr1_2 exon 77221610 77221798 77221610 ID=Msa0094120-mRNA-1:exon:27321;Parent=Msa0094120-mRNA-1
chr1_2 exon 77222703 77222814 77222703 ID=Msa0094120-mRNA-1:exon:27322;Parent=Msa0094120-mRNA-1
chr1_2 exon 77223368 77223450 77223368 ID=Msa0094120-mRNA-1:exon:27323;Parent=Msa0094120-mRNA-1
chr1_2 exon 77223550 77223660 77223550 ID=Msa0094120-mRNA-1:exon:27324;Parent=Msa0094120-mRNA-1
chr1_2 exon 77223943 77224029 77223943 ID=Msa0094120-mRNA-1:exon:27325;Parent=Msa0094120-mRNA-1
chr1_2 exon 77224849 77225517 77224849 ID=Msa0094120-mRNA-1:exon:27326;Parent=Msa0094120-mRNA-1
chr1_2 five_prime_UTR 77220643 77220737 77220643 ID=Msa0094120-mRNA-1:five_prime_utr;Parent=Msa0094120-mRNA-1
chr1_2 five_prime_UTR 77220914 77220983 77220914 ID=Msa0094120-mRNA-1:five_prime_utr;Parent=Msa0094120-mRNA-1
chr1_2 CDS 77220984 77221169 77220984 ID=Msa0094120-mRNA-1:cds;Parent=Msa0094120-mRNA-1
chr1_2 CDS 77221610 77221798 77221610 ID=Msa0094120-mRNA-1:cds;Parent=Msa0094120-mRNA-1
chr1_2 CDS 77222703 77222814 77222703 ID=Msa0094120-mRNA-1:cds;Parent=Msa0094120-mRNA-1
chr1_2 CDS 77223368 77223450 77223368 ID=Msa0094120-mRNA-1:cds;Parent=Msa0094120-mRNA-1
chr1_2 CDS 77223550 77223660 77223550 ID=Msa0094120-mRNA-1:cds;Parent=Msa0094120-mRNA-1
chr1_2 CDS 77223943 77224029 77223943 ID=Msa0094120-mRNA-1:cds;Parent=Msa0094120-mRNA-1
chr1_2 CDS 77224849 77225193 77224849 ID=Msa0094120-mRNA-1:cds;Parent=Msa0094120-mRNA-1
chr1_2 three_prime_UTR 77225194 77225517 77225194 ID=Msa0094120-mRNA-1:three_prime_utr;Parent=Msa0094120-mRNA-1
Gene Sequence

>Msa0094120

ATGTCTTCCAAGAGAAACCTTCCATCATGGATGACTTCAAAAGAAGATGATGGTCACGGAAATTTTGGAAAGAGACCAACTTTGGATGAAGGTGGTGAGAAATCCAGTGAAATTGGGTCTTCCAACAAGAAGACCAAAGTTCAAAATGAAAATGCTGGAAAATCTTCTGACTTCAACAAGCTTATGGAAGGTGTAGTTTTTGTGCTGTCGGGTTTTGTGAATCCGGAGCGTGGCATCTTGAGGTCGCGTGCTATGGAAATGGGAGCAGAGTATAAGCAGGACTGGAACTCTAATTGCACTCTTTTGGTTTGTGCATTTCCAAATACTCCCAAGTTTCGACAAGTTGAAGCTGATTGTGGAACCATTGTATCAAAGGATTGGATGCAAGAGTGTTACAGCCAGAGGAAACTCGTTGAAATTGATAGTTACCTTATGCATGCTGGGAAACCATGGCGTAAAGGAGGTAGATCACATGAAGTCAATGAAGAACAAAAACCATCTGTACCCCACAAACCACAAAAGCATGTTGAAGGAGAGCCTTCAAAGGAGACTACTTCCATAAAATCAAAGGGAAAAGACATTGACGATCCTAGGAAATGCTTTGAGCCTTCTGAAGTGAAGAAGTGGGCTCTTGATGATTTGAATAAAACAATTCAGTGGTTGGAAAGTCAAGAAGAAAAGCCAGATCCAAGTGAGATAACAAAAATAGCTGCAGAAGGGATTCTGACTTGTTTGCAAGATGCCATATGTTCTCTCGAGGAAAAACAGGACATTGGGAGAGTAACTGAGGACTGGAAATTCTTACCTCGAGTTGTTGAGGAGCTTGCAAAATTGGATGTTGTGGGAAACAATAAACCTTCAATGTCAAAGGAAGATATCCACAAACTAGCACTGGACTGCAAATGTATTTACGAGGAAGAACTAAATAGGTTAGATCATGAATCGACAAAGAAATCAAAGATAAATGAAGAACATAGGAGCAAAAATGGAAGAACAAATGCTGCATCTTCTTCTGGTGCAGTTGACTATGATAGTGATGATACAATCGAGATGACGGAACAAGAAATAGACCTTGCATATAAGACTTTATCCTCTAAGATGTGTCACCTGTGA

Protein sequence

>Msa0094120

MSSKRNLPSWMTSKEDDGHGNFGKRPTLDEGGEKSSEIGSSNKKTKVQNENAGKSSDFNKLMEGVVFVLSGFVNPERGILRSRAMEMGAEYKQDWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKDWMQECYSQRKLVEIDSYLMHAGKPWRKGGRSHEVNEEQKPSVPHKPQKHVEGEPSKETTSIKSKGKDIDDPRKCFEPSEVKKWALDDLNKTIQWLESQEEKPDPSEITKIAAEGILTCLQDAICSLEEKQDIGRVTEDWKFLPRVVEELAKLDVVGNNKPSMSKEDIHKLALDCKCIYEEELNRLDHESTKKSKINEEHRSKNGRTNAASSSGAVDYDSDDTIEMTEQEIDLAYKTLSSKMCHL*