AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0694170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694170 MtrunA17_Chr4g0044851 98.089 471 9 0 1 471 1 471 0.0 955
Msa0694170 MtrunA17_Chr4g0044841 84.289 471 70 2 3 469 1 471 0.0 801
Msa0694170 MtrunA17_Chr1g0153371 67.597 466 144 4 6 469 8 468 0.0 659
Msa0694170 MtrunA17_Chr8g0369791 55.180 473 203 5 1 471 1 466 0.0 543
Msa0694170 MtrunA17_Chr5g0408181 55.365 466 188 7 5 468 14 461 0.0 537
Msa0694170 MtrunA17_Chr1g0164371 55.292 463 197 4 5 466 19 472 2.46e-174 498
Msa0694170 MtrunA17_Chr2g0293421 33.409 443 279 8 37 466 45 484 1.67e-82 263
Msa0694170 MtrunA17_Chr2g0293411 33.034 445 281 7 37 466 41 483 3.25e-80 257
Msa0694170 MtrunA17_Chr8g0341951 33.333 450 286 7 3 442 1 446 7.09e-80 256
Msa0694170 MtrunA17_Chr3g0089361 33.408 446 279 10 36 470 39 477 1.02e-79 255
Msa0694170 MtrunA17_Chr6g0455461 31.712 473 301 11 2 467 4 461 3.32e-79 254
Msa0694170 MtrunA17_Chr3g0078411 31.078 473 304 11 2 467 4 461 6.30e-79 253
Msa0694170 MtrunA17_Chr8g0388921 30.189 477 309 9 6 468 9 475 3.91e-76 246
Msa0694170 MtrunA17_Chr8g0381541 33.806 423 265 7 37 445 43 464 3.46e-74 241
Msa0694170 MtrunA17_Chr8g0381571 33.890 419 262 7 37 441 43 460 1.00e-73 239
Msa0694170 MtrunA17_Chr5g0443401 30.898 479 312 8 1 466 1 473 2.12e-73 239
Msa0694170 MtrunA17_Chr7g0219961 29.759 457 305 8 13 466 16 459 3.70e-73 238
Msa0694170 MtrunA17_Chr3g0113321 32.394 426 263 9 33 442 25 441 3.93e-73 239
Msa0694170 MtrunA17_Chr5g0400421 31.687 486 303 13 10 470 9 490 5.37e-73 238
Msa0694170 MtrunA17_Chr5g0397971 31.731 416 273 6 36 442 30 443 9.22e-73 238
Msa0694170 MtrunA17_Chr3g0141801 30.737 475 311 9 10 471 16 485 3.07e-72 236
Msa0694170 MtrunA17_Chr7g0226771 31.209 455 299 8 6 453 7 454 1.08e-71 234
Msa0694170 MtrunA17_Chr3g0107501 30.543 442 294 4 37 466 33 473 4.71e-71 233
Msa0694170 MtrunA17_Chr5g0403931 32.143 476 292 11 13 466 10 476 1.13e-70 232
Msa0694170 MtrunA17_Chr5g0443731 31.435 439 288 6 36 463 28 464 1.47e-70 231
Msa0694170 MtrunA17_Chr3g0107511 30.252 476 315 6 1 464 1 471 2.44e-70 231
Msa0694170 MtrunA17_Chr3g0089351 31.343 402 266 8 72 470 1 395 2.45e-69 226
Msa0694170 MtrunA17_Chr5g0400411 32.091 483 304 11 10 470 9 489 5.02e-68 225
Msa0694170 MtrunA17_Chr8g0372411 31.279 438 285 8 38 464 40 472 2.45e-67 223
Msa0694170 MtrunA17_Chr8g0380471 30.316 475 305 11 6 467 12 473 4.81e-67 222
Msa0694170 MtrunA17_Chr8g0372711 29.873 472 314 7 2 464 16 479 9.96e-67 222
Msa0694170 MtrunA17_Chr8g0339861 32.200 441 277 12 37 462 45 478 3.32e-66 220
Msa0694170 MtrunA17_Chr8g0380931 30.277 469 283 11 26 467 51 502 1.70e-64 216
Msa0694170 MtrunA17_Chr8g0373441 31.178 433 263 11 13 429 10 423 3.42e-62 208
Msa0694170 MtrunA17_Chr6g0478161 30.044 456 288 11 5 443 23 464 1.75e-59 203
Msa0694170 MtrunA17_Chr1g0161671 29.795 292 192 6 37 316 29 319 1.98e-37 139
Msa0694170 MtrunA17_Chr8g0381551 30.241 291 189 6 37 314 43 332 1.98e-37 140
Msa0694170 MtrunA17_Chr4g0000161 30.675 326 198 10 10 312 6 326 6.97e-34 130
Msa0694170 MtrunA17_Chr5g0404861 43.357 143 76 2 327 466 15 155 5.48e-32 120
Msa0694170 MtrunA17_Chr4g0013471 27.869 305 193 8 37 328 43 333 4.00e-31 124
Msa0694170 MtrunA17_Chr4g0000171 29.110 292 185 8 37 313 43 327 4.72e-30 119
Msa0694170 MtrunA17_Chr6g0463551 31.844 179 114 2 195 366 12 189 9.57e-30 115
Msa0694170 MtrunA17_Chr5g0405001 24.792 480 305 13 3 444 20 481 3.00e-27 114
Msa0694170 MtrunA17_Chr1g0162811 25.478 471 309 16 5 444 9 468 2.32e-26 111
Msa0694170 MtrunA17_Chr3g0101751 24.380 484 313 14 1 444 6 476 1.10e-25 109
Msa0694170 MtrunA17_Chr8g0381561 47.115 104 54 1 339 441 8 111 1.87e-25 100
Msa0694170 MtrunA17_Chr1g0160851 25.667 487 289 18 10 446 4 467 2.61e-25 108
Msa0694170 MtrunA17_Chr5g0403321 25.330 454 282 16 36 444 33 474 2.91e-25 108
Msa0694170 MtrunA17_Chr1g0174481 23.899 477 315 15 7 446 7 472 7.27e-25 107
Msa0694170 MtrunA17_Chr3g0101711 23.739 476 313 15 7 444 9 472 1.27e-24 106
Msa0694170 MtrunA17_Chr3g0089291 26.891 238 166 7 72 306 1 233 2.21e-24 101
Msa0694170 MtrunA17_Chr5g0436981 38.272 162 86 5 36 187 27 184 2.25e-24 100
Msa0694170 MtrunA17_Chr8g0334891 24.449 454 288 16 33 457 34 461 5.60e-24 104
Msa0694170 MtrunA17_Chr4g0000151 38.281 128 77 2 333 459 5 131 7.90e-24 97.1
Msa0694170 MtrunA17_Chr5g0445421 23.922 464 301 15 7 444 84 521 8.91e-24 104
Msa0694170 MtrunA17_Chr3g0101691 25.052 479 300 17 9 444 11 473 9.33e-24 103
Msa0694170 MtrunA17_Chr6g0463801 24.837 459 308 12 22 453 23 471 1.09e-23 103
Msa0694170 MtrunA17_Chr2g0314731 23.016 504 336 12 1 470 1 486 1.60e-23 103
Msa0694170 MtrunA17_Chr5g0404881 30.131 229 152 4 3 225 1 227 2.07e-23 98.6
Msa0694170 MtrunA17_Chr1g0164211 23.831 449 294 14 34 446 28 464 2.60e-23 102
Msa0694170 MtrunA17_Chr3g0101801 23.459 503 326 17 1 461 5 490 5.31e-23 101
Msa0694170 MtrunA17_Chr4g0035921 24.183 459 281 15 38 444 38 481 6.75e-23 101
Msa0694170 MtrunA17_Chr1g0176831 24.008 504 328 14 2 470 33 516 8.03e-23 101
Msa0694170 MtrunA17_Chr1g0174451 22.981 483 324 13 3 446 5 478 8.36e-23 101
Msa0694170 MtrunA17_Chr3g0101661 24.174 484 305 17 7 446 9 474 9.83e-23 100
Msa0694170 MtrunA17_Chr5g0445451 24.625 467 315 16 7 444 10 468 1.32e-22 100
Msa0694170 MtrunA17_Chr5g0437001 41.667 108 59 1 334 437 1 108 1.63e-22 94.0
Msa0694170 MtrunA17_Chr7g0235261 25.059 427 263 17 66 455 85 491 1.69e-22 100
Msa0694170 MtrunA17_Chr3g0101701 24.528 477 309 16 9 446 11 475 3.05e-22 99.4
Msa0694170 MtrunA17_Chr1g0174441 23.409 487 308 17 6 446 32 499 4.08e-22 99.4
Msa0694170 MtrunA17_Chr7g0258221 24.059 478 316 13 7 446 8 476 4.87e-22 99.0
Msa0694170 MtrunA17_Chr1g0205371 26.105 475 313 14 3 446 1 468 5.06e-22 98.6
Msa0694170 MtrunA17_Chr2g0310381 22.661 481 311 14 5 444 1 461 8.82e-22 97.8
Msa0694170 MtrunA17_Chr4g0004601 24.384 406 258 14 83 455 123 512 8.99e-22 98.2
Msa0694170 MtrunA17_Chr3g0101671 23.789 475 317 16 6 444 8 473 9.06e-22 98.2
Msa0694170 MtrunA17_Chr7g0218611 22.676 441 301 9 38 444 34 468 1.12e-21 97.8
Msa0694170 MtrunA17_Chr5g0395321 23.567 471 321 13 2 444 6 465 1.53e-21 97.4
Msa0694170 MtrunA17_Chr8g0356001 25.160 469 295 16 19 444 19 474 1.77e-21 97.1
Msa0694170 MtrunA17_Chr4g0058231 24.646 495 299 19 5 449 4 474 1.82e-21 97.1
Msa0694170 MtrunA17_Chr8g0372251 22.940 449 293 11 38 444 36 473 1.93e-21 97.1
Msa0694170 MtrunA17_Chr5g0395331 25.052 479 298 17 11 444 10 472 2.08e-21 97.1
Msa0694170 MtrunA17_Chr3g0101821 22.645 499 336 19 6 466 3 489 2.71e-21 96.7
Msa0694170 MtrunA17_Chr2g0314721 23.849 478 319 11 18 459 23 491 2.73e-21 96.7
Msa0694170 MtrunA17_Chr3g0116741 24.194 496 304 15 4 452 21 491 2.93e-21 96.7
Msa0694170 MtrunA17_Chr3g0101631 23.493 481 312 13 3 444 1 464 2.99e-21 96.3
Msa0694170 MtrunA17_Chr2g0310391 21.384 477 314 13 5 440 1 457 3.39e-21 96.3
Msa0694170 MtrunA17_Chr8g0361471 24.421 475 313 17 6 444 5 469 3.77e-21 96.3
Msa0694170 MtrunA17_Chr4g0011901 24.406 463 288 14 26 444 20 464 3.95e-21 95.9
Msa0694170 MtrunA17_Chr1g0205361 25.673 483 289 16 11 446 8 467 4.17e-21 95.9
Msa0694170 MtrunA17_Chr4g0011981 24.561 456 296 12 26 444 20 464 4.61e-21 95.9
Msa0694170 MtrunA17_Chr1g0160861 29.130 230 145 6 229 446 85 308 4.63e-21 94.0
Msa0694170 MtrunA17_Chr5g0445381 24.000 475 316 16 2 444 38 499 6.23e-21 95.5
Msa0694170 MtrunA17_Chr6g0463541 38.235 102 63 0 364 465 4 105 7.80e-21 87.4
Msa0694170 MtrunA17_Chr3g0101611 24.053 449 295 13 33 445 34 472 8.40e-21 95.1
Msa0694170 MtrunA17_Chr8g0382901 22.727 462 313 12 5 444 4 443 8.95e-21 95.9
Msa0694170 MtrunA17_Chr8g0334941 28.235 255 157 7 216 457 65 306 8.96e-21 93.2
Msa0694170 MtrunA17_Chr7g0265611 22.857 455 301 13 31 444 40 485 1.08e-20 94.7
Msa0694170 MtrunA17_Chr3g0089381 32.298 161 105 2 208 366 34 192 1.13e-20 90.5
Msa0694170 MtrunA17_Chr3g0084921 24.124 485 318 16 9 451 10 486 1.31e-20 94.7
Msa0694170 MtrunA17_Chr6g0465511 24.583 480 306 19 6 444 5 469 1.37e-20 94.4
Msa0694170 MtrunA17_Chr6g0466331 24.632 475 312 18 6 444 5 469 1.55e-20 94.4
Msa0694170 MtrunA17_Chr7g0215181 26.984 315 203 11 149 444 176 482 1.63e-20 94.4
Msa0694170 MtrunA17_Chr4g0057001 25.167 449 291 16 33 444 44 484 1.63e-20 94.4
Msa0694170 MtrunA17_Chr8g0355961 25.105 478 301 16 9 444 12 474 1.65e-20 94.4
Msa0694170 MtrunA17_Chr5g0403351 24.528 477 308 18 6 444 9 471 1.69e-20 94.4
Msa0694170 MtrunA17_Chr5g0430031 22.410 473 320 14 6 444 13 472 2.92e-20 93.6
Msa0694170 MtrunA17_Chr8g0390881 22.803 478 318 15 5 444 8 472 3.64e-20 93.2
Msa0694170 MtrunA17_Chr5g0401681 21.130 478 325 12 2 446 5 463 3.74e-20 93.2
Msa0694170 MtrunA17_Chr7g0235551 24.116 481 310 17 7 444 8 476 5.22e-20 92.8
Msa0694170 MtrunA17_Chr6g0484811 22.669 472 321 13 8 444 11 473 5.79e-20 92.4
Msa0694170 MtrunA17_Chr2g0296651 24.101 473 307 13 8 446 9 463 6.91e-20 92.4
Msa0694170 MtrunA17_Chr8g0339331 25.431 464 296 18 24 444 28 484 7.48e-20 92.4
Msa0694170 MtrunA17_Chr1g0162801 23.849 478 311 16 6 444 8 471 1.35e-19 91.3
Msa0694170 MtrunA17_Chr3g0101601 24.000 475 318 14 3 444 1 465 1.46e-19 91.3
Msa0694170 MtrunA17_Chr4g0020041 21.895 475 333 13 3 444 1 470 2.01e-19 90.9
Msa0694170 MtrunA17_Chr1g0167321 24.638 483 308 14 3 444 1 468 2.16e-19 90.9
Msa0694170 MtrunA17_Chr6g0484841 23.251 443 300 14 36 444 36 472 2.51e-19 90.5
Msa0694170 MtrunA17_Chr5g0446161 23.769 467 319 14 7 444 10 468 2.81e-19 90.5
Msa0694170 MtrunA17_Chr2g0286091 23.620 453 290 15 23 438 32 465 2.89e-19 90.5
Msa0694170 MtrunA17_Chr4g0024771 22.030 463 328 14 11 444 10 468 3.31e-19 90.1
Msa0694170 MtrunA17_Chr0c19g0493771 27.354 223 139 6 239 445 406 621 3.33e-19 90.9
Msa0694170 MtrunA17_Chr1g0174471 23.395 483 315 16 7 446 23 493 3.41e-19 90.5
Msa0694170 MtrunA17_Chr3g0101761 22.105 475 326 16 6 444 3 469 4.14e-19 90.1
Msa0694170 MtrunA17_Chr4g0030701 23.593 462 295 12 38 451 36 487 6.40e-19 89.4
Msa0694170 MtrunA17_Chr4g0011961 24.160 476 306 15 8 444 4 463 6.54e-19 89.4
Msa0694170 MtrunA17_Chr3g0128461 29.333 225 141 7 231 444 280 497 7.82e-19 89.4
Msa0694170 MtrunA17_Chr5g0445461 23.142 471 317 17 7 444 10 468 7.87e-19 89.0
Msa0694170 MtrunA17_Chr5g0445441 23.881 469 316 15 7 444 51 509 8.04e-19 89.4
Msa0694170 MtrunA17_Chr4g0046321 24.057 424 276 12 67 451 65 481 8.35e-19 89.0
Msa0694170 MtrunA17_Chr8g0364651 23.459 503 297 19 10 454 6 478 8.92e-19 89.0
Msa0694170 MtrunA17_Chr5g0446151 22.955 440 296 13 37 444 41 469 8.97e-19 89.0
Msa0694170 MtrunA17_Chr6g0463561 30.625 160 100 2 7 161 14 167 9.16e-19 84.3
Msa0694170 MtrunA17_Chr4g0053621 21.573 445 304 14 37 445 31 466 1.12e-18 88.6
Msa0694170 MtrunA17_Chr1g0161651 25.532 282 157 6 37 267 43 322 1.19e-18 87.0
Msa0694170 MtrunA17_Chr4g0063221 23.810 441 292 15 61 467 86 516 1.22e-18 88.6
Msa0694170 MtrunA17_Chr8g0362731 26.020 392 221 18 97 444 15 381 1.24e-18 87.8
Msa0694170 MtrunA17_Chr5g0406651 23.983 467 299 13 20 444 13 465 1.33e-18 88.2
Msa0694170 MtrunA17_Chr8g0357421 24.628 471 314 18 6 444 8 469 1.56e-18 88.2
Msa0694170 MtrunA17_Chr3g0101811 22.201 518 327 20 9 466 3 504 2.33e-18 87.8
Msa0694170 MtrunA17_Chr7g0224551 23.327 493 318 14 3 451 1 477 3.41e-18 87.0
Msa0694170 MtrunA17_Chr3g0101731 22.594 478 320 15 5 444 4 469 4.36e-18 86.7
Msa0694170 MtrunA17_Chr8g0377341 22.426 437 294 12 40 442 70 495 6.34e-18 86.3
Msa0694170 MtrunA17_Chr5g0431501 22.345 452 293 15 37 444 33 470 6.81e-18 86.3
Msa0694170 MtrunA17_Chr5g0431461 22.345 452 293 15 37 444 33 470 6.81e-18 86.3
Msa0694170 MtrunA17_Chr3g0101831 22.863 503 328 18 9 466 3 490 6.92e-18 86.3
Msa0694170 MtrunA17_Chr8g0357431 22.432 477 328 13 3 444 1 470 7.17e-18 86.3
Msa0694170 MtrunA17_Chr7g0218601 23.956 455 278 14 37 444 34 467 7.31e-18 86.3
Msa0694170 MtrunA17_Chr6g0457421 28.936 235 152 7 219 444 252 480 7.73e-18 85.9
Msa0694170 MtrunA17_Chr6g0458561 23.505 485 315 20 3 444 26 497 9.15e-18 85.9
Msa0694170 MtrunA17_Chr3g0116681 24.359 468 303 18 12 444 20 471 1.11e-17 85.5
Msa0694170 MtrunA17_Chr3g0101571 21.818 440 306 13 36 444 35 467 1.19e-17 85.5
Msa0694170 MtrunA17_Chr7g0255531 24.180 488 296 18 3 442 1 462 1.70e-17 85.1
Msa0694170 MtrunA17_Chr2g0280261 21.670 443 294 9 37 442 34 460 2.15e-17 84.7
Msa0694170 MtrunA17_Chr3g0101721 22.993 461 307 16 37 461 37 485 2.57e-17 84.3
Msa0694170 MtrunA17_Chr5g0431511 23.226 465 308 16 37 464 33 485 2.60e-17 84.3
Msa0694170 MtrunA17_Chr3g0101651 23.382 479 312 16 9 446 11 475 2.84e-17 84.3
Msa0694170 MtrunA17_Chr8g0387101 25.057 439 285 15 61 458 58 493 2.85e-17 84.3
Msa0694170 MtrunA17_Chr1g0203141 23.272 434 293 12 61 464 86 509 3.32e-17 84.0
Msa0694170 MtrunA17_Chr5g0431671 22.500 440 301 15 37 444 38 469 3.82e-17 84.0
Msa0694170 MtrunA17_Chr3g0101581 23.026 456 283 17 36 444 36 470 4.53e-17 83.6
Msa0694170 MtrunA17_Chr1g0207841 24.163 418 259 15 71 451 93 489 4.56e-17 83.6
Msa0694170 MtrunA17_Chr1g0200961 22.870 446 296 13 38 444 29 465 4.93e-17 83.6
Msa0694170 MtrunA17_Chr4g0046351 22.642 424 282 12 67 451 65 481 4.96e-17 83.6
Msa0694170 MtrunA17_Chr4g0030711 23.218 435 284 11 62 451 61 490 5.34e-17 83.6
Msa0694170 MtrunA17_Chr5g0430101 21.730 474 320 17 6 444 12 469 5.55e-17 83.6
Msa0694170 MtrunA17_Chr1g0197891 23.226 465 318 14 10 444 8 463 5.61e-17 83.2
Msa0694170 MtrunA17_Chr1g0174461 22.222 459 303 13 6 425 13 456 6.25e-17 83.2
Msa0694170 MtrunA17_Chr3g0135841 22.128 470 288 15 39 440 44 503 7.84e-17 83.2
Msa0694170 MtrunA17_Chr5g0419691 23.937 447 288 12 38 444 30 464 8.39e-17 82.8
Msa0694170 MtrunA17_Chr4g0039901 23.620 453 283 16 36 444 34 467 9.46e-17 82.8
Msa0694170 MtrunA17_Chr5g0396521 26.154 260 150 8 227 452 299 550 9.79e-17 82.8
Msa0694170 MtrunA17_Chr7g0258211 24.138 232 152 4 235 446 255 482 9.98e-17 82.8
Msa0694170 MtrunA17_Chr1g0197851 23.077 468 314 15 11 444 8 463 1.16e-16 82.4
Msa0694170 MtrunA17_Chr1g0197871 24.370 476 313 19 3 444 1 463 1.29e-16 82.0
Msa0694170 MtrunA17_Chr7g0262111 26.434 401 258 15 69 444 90 478 1.79e-16 81.6
Msa0694170 MtrunA17_Chr1g0197881 23.291 468 312 16 11 444 8 462 1.95e-16 81.6
Msa0694170 MtrunA17_Chr4g0056951 21.163 430 296 13 52 444 56 479 2.25e-16 81.6
Msa0694170 MtrunA17_Chr1g0200951 22.545 448 288 16 40 442 64 497 2.55e-16 81.3
Msa0694170 MtrunA17_Chr5g0430081 21.921 479 330 15 1 444 1 470 2.55e-16 81.3
Msa0694170 MtrunA17_Chr4g0011921 24.742 485 293 15 8 444 4 464 2.91e-16 81.3
Msa0694170 MtrunA17_Chr5g0431641 21.839 435 309 12 37 444 38 468 3.01e-16 81.3
Msa0694170 MtrunA17_Chr2g0280071 23.361 488 306 16 5 444 40 507 3.56e-16 81.3
Msa0694170 MtrunA17_Chr1g0151221 22.293 471 281 13 39 440 41 495 4.15e-16 80.9
Msa0694170 MtrunA17_Chr4g0011871 23.438 448 290 11 38 444 30 465 5.27e-16 80.5
Msa0694170 MtrunA17_Chr1g0161641 42.105 76 43 1 367 441 13 88 6.62e-16 72.8
Msa0694170 MtrunA17_Chr8g0362701 22.685 432 292 12 53 446 50 477 6.97e-16 80.1
Msa0694170 MtrunA17_Chr4g0017411 26.636 214 148 3 231 443 243 448 7.19e-16 79.7
Msa0694170 MtrunA17_Chr4g0052881 23.671 207 153 2 238 443 259 461 7.76e-16 79.7
Msa0694170 MtrunA17_Chr2g0313771 25.128 390 257 13 83 444 114 496 9.29e-16 79.7
Msa0694170 MtrunA17_Chr4g0052861 20.747 482 314 15 2 446 13 463 1.19e-15 79.3
Msa0694170 MtrunA17_Chr1g0193811 22.791 430 287 14 69 464 92 510 1.43e-15 79.0
Msa0694170 MtrunA17_Chr6g0472221 23.810 420 269 15 61 444 95 499 1.46e-15 79.0
Msa0694170 MtrunA17_Chr8g0362481 22.359 407 268 13 81 446 9 408 1.47e-15 78.6
Msa0694170 MtrunA17_Chr4g0052851 27.103 214 147 3 231 443 246 451 1.49e-15 79.0
Msa0694170 MtrunA17_Chr4g0058281 22.083 480 327 12 9 452 21 489 1.78e-15 78.6
Msa0694170 MtrunA17_Chr5g0403331 22.614 482 319 18 3 444 5 472 1.91e-15 78.6
Msa0694170 MtrunA17_Chr4g0011881 23.467 473 295 15 19 444 12 464 2.23e-15 78.6
Msa0694170 MtrunA17_Chr5g0401691 24.000 200 145 3 252 448 287 482 2.26e-15 78.6
Msa0694170 MtrunA17_Chr5g0395381 29.500 200 129 6 251 444 247 440 4.12e-15 77.4
Msa0694170 MtrunA17_Chr1g0213671 24.283 453 285 15 36 442 33 473 4.21e-15 77.8
Msa0694170 MtrunA17_Chr4g0046631 23.451 452 294 17 29 434 37 482 5.59e-15 77.4
Msa0694170 MtrunA17_Chr2g0296661 25.389 193 139 2 252 443 277 465 6.73e-15 77.0
Msa0694170 MtrunA17_Chr8g0339311 22.737 453 295 16 36 440 43 488 7.63e-15 76.6
Msa0694170 MtrunA17_Chr5g0430131 21.784 482 328 16 1 444 1 471 8.55e-15 76.6
Msa0694170 MtrunA17_Chr5g0445531 22.146 438 303 13 37 444 38 467 9.81e-15 76.3
Msa0694170 MtrunA17_Chr4g0039391 21.154 416 281 10 69 446 66 472 1.63e-14 75.9
Msa0694170 MtrunA17_Chr5g0400391 39.535 86 51 1 385 469 2 87 2.09e-14 69.3
Msa0694170 MtrunA17_Chr4g0076161 22.718 471 325 15 6 444 8 471 2.36e-14 75.1
Msa0694170 MtrunA17_Chr5g0409051 22.199 482 282 17 31 444 23 479 2.60e-14 75.1
Msa0694170 MtrunA17_Chr5g0419451 23.333 450 299 17 26 442 50 486 3.85e-14 74.7
Msa0694170 MtrunA17_Chr8g0364631 24.499 449 292 17 37 443 32 475 1.55e-13 72.8
Msa0694170 MtrunA17_Chr2g0288661 22.299 435 275 12 45 444 85 491 2.19e-13 72.4
Msa0694170 MtrunA17_Chr7g0246221 24.691 243 165 6 217 445 234 472 2.81e-13 72.0
Msa0694170 MtrunA17_Chr8g0351801 25.197 254 152 7 223 444 239 486 3.25e-13 71.6
Msa0694170 MtrunA17_Chr7g0246181 26.141 241 162 7 217 445 235 471 3.89e-13 71.2
Msa0694170 MtrunA17_Chr4g0058191 27.461 193 129 4 269 454 280 468 4.38e-13 71.2
Msa0694170 MtrunA17_Chr6g0479681 22.594 478 316 17 35 464 52 523 9.76e-13 70.1
Msa0694170 MtrunA17_Chr4g0026941 28.627 255 153 9 231 468 295 537 9.93e-13 70.1
Msa0694170 MtrunA17_Chr3g0107611 20.623 514 333 16 8 458 23 524 1.95e-12 69.3
Msa0694170 MtrunA17_Chr1g0156081 20.654 489 330 12 5 444 24 503 2.08e-12 69.3
Msa0694170 MtrunA17_Chr4g0011851 26.943 193 117 5 266 444 1 183 2.19e-12 66.2
Msa0694170 MtrunA17_Chr2g0280061 32.222 180 101 6 280 444 9 182 5.23e-12 65.1
Msa0694170 MtrunA17_Chr7g0246151 24.783 230 156 7 229 445 246 471 5.91e-12 67.8
Msa0694170 MtrunA17_Chr3g0101741 22.365 389 263 14 83 442 11 389 8.80e-12 67.0
Msa0694170 MtrunA17_Chr2g0307291 23.218 435 271 15 45 444 85 491 1.17e-11 66.6
Msa0694170 MtrunA17_Chr2g0313831 23.990 396 260 14 81 444 103 489 1.77e-11 66.2
Msa0694170 MtrunA17_Chr2g0280041 22.558 430 276 14 61 444 88 506 2.01e-11 66.2
Msa0694170 MtrunA17_Chr7g0260831 22.772 404 259 16 78 441 80 470 2.15e-11 65.9
Msa0694170 MtrunA17_Chr8g0373431 48.333 60 30 1 407 466 4 62 3.82e-11 58.9
Msa0694170 MtrunA17_Chr8g0354511 22.864 398 265 13 79 444 110 497 4.91e-11 64.7
Msa0694170 MtrunA17_Chr7g0246121 26.250 240 156 7 217 442 234 466 5.65e-11 64.7
Msa0694170 MtrunA17_Chr8g0344191 22.366 465 305 17 22 444 56 506 5.70e-11 64.7
Msa0694170 MtrunA17_Chr8g0351401 23.457 243 166 6 231 453 249 491 8.50e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694170 AT3G19270.2 69.181 464 134 2 6 469 11 465 0.0 681
Msa0694170 AT3G19270.1 68.879 437 127 2 6 442 11 438 0.0 640
Msa0694170 AT4G19230.1 57.783 469 188 5 3 469 1 461 0.0 582
Msa0694170 AT5G45340.1 57.267 461 183 6 9 469 15 461 0.0 563
Msa0694170 AT4G19230.2 56.710 462 183 7 3 457 1 452 0.0 550
Msa0694170 AT5G45340.2 57.506 433 170 6 9 441 15 433 0.0 530
Msa0694170 AT2G29090.2 56.713 432 185 2 36 466 48 478 0.0 514
Msa0694170 AT2G29090.1 56.713 432 185 2 36 466 48 478 0.0 514
Msa0694170 AT2G29090.3 54.948 384 171 2 84 466 1 383 1.60e-150 434
Msa0694170 AT2G29090.4 52.920 274 127 2 36 308 48 320 3.34e-96 294
Msa0694170 AT1G05160.2 34.831 445 272 9 37 466 45 486 2.54e-87 276
Msa0694170 AT1G05160.1 34.831 445 272 9 37 466 45 486 2.54e-87 276
Msa0694170 AT2G32440.2 35.794 447 269 10 37 469 44 486 1.05e-85 271
Msa0694170 AT2G32440.1 35.794 447 269 10 37 469 44 486 1.05e-85 271
Msa0694170 AT5G05690.1 34.615 442 265 9 37 464 31 462 1.80e-76 247
Msa0694170 AT3G30180.1 32.614 417 274 6 33 446 30 442 6.86e-76 245
Msa0694170 AT5G36110.1 32.812 448 278 10 35 466 32 472 1.55e-74 242
Msa0694170 AT5G38970.1 30.067 449 300 7 1 446 5 442 6.29e-74 240
Msa0694170 AT1G19630.1 31.723 476 307 11 7 469 4 474 1.65e-72 237
Msa0694170 AT3G13730.1 32.874 435 272 8 24 442 35 465 3.15e-70 231
Msa0694170 AT3G50660.1 30.642 483 277 10 37 470 39 512 3.11e-69 229
Msa0694170 AT3G13730.2 32.719 434 272 8 24 441 35 464 5.95e-69 227
Msa0694170 AT1G12740.1 30.824 425 277 5 33 445 27 446 6.47e-69 228
Msa0694170 AT1G19630.3 31.473 448 290 10 7 442 4 446 2.34e-67 223
Msa0694170 AT1G12740.2 30.626 431 276 6 33 445 27 452 6.32e-67 222
Msa0694170 AT1G12740.4 30.394 431 277 6 33 445 27 452 1.91e-66 221
Msa0694170 AT4G36380.1 31.504 419 273 6 37 442 69 486 8.29e-66 221
Msa0694170 AT5G05690.2 34.667 375 226 7 37 401 31 396 6.22e-64 213
Msa0694170 AT5G38970.3 29.630 405 273 6 1 404 5 398 1.76e-63 212
Msa0694170 AT2G42850.1 31.448 442 284 9 37 466 45 479 8.01e-63 212
Msa0694170 AT1G55940.1 30.769 429 264 13 36 440 44 463 9.33e-58 198
Msa0694170 AT1G73340.1 29.535 430 268 9 33 442 39 453 1.96e-57 197
Msa0694170 AT1G55940.2 30.184 434 270 13 36 445 44 468 2.50e-57 197
Msa0694170 AT5G48000.2 30.317 442 294 9 36 466 34 472 2.52e-56 194
Msa0694170 AT5G48000.4 30.317 442 294 9 36 466 34 472 2.52e-56 194
Msa0694170 AT5G48000.7 30.317 442 294 9 36 466 34 472 2.52e-56 194
Msa0694170 AT5G48000.6 30.317 442 294 9 36 466 34 472 2.52e-56 194
Msa0694170 AT5G48000.5 30.317 442 294 9 36 466 34 472 2.52e-56 194
Msa0694170 AT5G48000.3 30.317 442 294 9 36 466 34 472 2.52e-56 194
Msa0694170 AT5G14400.2 29.241 448 265 13 42 467 1 418 2.62e-56 193
Msa0694170 AT5G48000.1 30.317 442 294 9 36 466 75 513 9.02e-56 194
Msa0694170 AT1G19630.2 30.713 407 265 10 7 401 4 405 1.20e-54 189
Msa0694170 AT5G14400.3 29.665 418 248 11 42 442 1 389 2.59e-54 187
Msa0694170 AT5G38970.2 29.032 372 255 6 89 457 4 369 2.02e-53 184
Msa0694170 AT5G38970.4 29.032 372 255 6 89 457 4 369 2.02e-53 184
Msa0694170 AT3G50660.2 29.602 402 237 9 37 401 39 431 3.57e-53 185
Msa0694170 AT1G78490.1 29.861 432 289 9 36 456 34 462 6.42e-53 185
Msa0694170 AT3G44970.1 28.605 423 283 7 36 444 34 451 4.05e-52 183
Msa0694170 AT5G05690.3 32.386 352 218 8 123 464 2 343 3.02e-50 175
Msa0694170 AT1G65670.1 29.384 422 271 9 36 444 34 441 7.29e-48 172
Msa0694170 AT4G15300.3 27.725 422 282 9 36 444 24 435 1.07e-47 171
Msa0694170 AT4G15300.2 27.725 422 282 9 36 444 34 445 1.11e-47 171
Msa0694170 AT4G15393.2 29.216 421 276 12 36 444 34 444 2.64e-47 170
Msa0694170 AT4G15396.1 27.857 420 285 10 36 444 34 446 6.82e-47 169
Msa0694170 AT4G15396.3 27.751 418 284 10 36 442 34 444 1.04e-45 166
Msa0694170 AT1G12740.3 27.536 345 236 4 33 368 27 366 2.81e-44 159
Msa0694170 AT5G36110.2 30.056 356 226 9 35 375 32 379 2.90e-44 160
Msa0694170 AT5G14400.1 28.753 393 232 12 93 467 2 364 1.18e-43 157
Msa0694170 AT1G78490.2 28.342 374 258 7 36 401 34 405 1.02e-41 154
Msa0694170 AT4G15300.1 26.351 444 282 11 36 444 24 457 1.29e-41 155
Msa0694170 AT4G15310.1 29.040 427 278 11 33 444 32 448 1.91e-40 151
Msa0694170 AT4G15396.2 26.303 422 268 11 36 444 34 425 2.36e-39 148
Msa0694170 AT4G36380.2 28.319 339 233 5 37 366 69 406 4.29e-39 147
Msa0694170 AT4G15393.1 28.075 374 252 10 36 401 34 398 1.67e-36 139
Msa0694170 AT2G42850.2 29.688 384 246 10 9 375 12 388 2.25e-36 138
Msa0694170 AT5G14400.4 28.446 341 217 10 42 366 1 330 6.47e-36 135
Msa0694170 AT4G15396.4 26.273 373 262 8 36 401 34 400 6.63e-36 137
Msa0694170 AT5G36130.1 44.444 135 73 2 334 466 1 135 7.16e-32 119
Msa0694170 AT5G36140.1 28.671 286 185 8 35 308 31 309 8.00e-31 121
Msa0694170 AT3G30290.1 24.868 378 271 8 73 444 5 375 1.93e-30 122
Msa0694170 AT4G13770.1 25.210 476 313 14 3 444 1 467 1.08e-26 113
Msa0694170 AT4G15393.3 25.737 373 229 10 36 401 34 365 5.44e-25 106
Msa0694170 AT5G04330.1 23.568 454 305 13 28 444 24 472 3.91e-23 102
Msa0694170 AT3G44970.2 23.867 331 236 6 36 355 34 359 5.56e-23 100
Msa0694170 AT5G57220.1 23.849 478 306 15 3 445 1 455 1.39e-22 100
Msa0694170 AT2G45560.1 23.918 485 316 17 3 444 1 475 3.36e-22 99.8
Msa0694170 AT3G20940.1 23.831 449 303 14 33 446 38 482 3.44e-22 99.8
Msa0694170 AT4G37320.1 22.407 482 319 16 3 448 1 463 3.78e-22 99.4
Msa0694170 AT4G37370.1 25.455 220 159 2 230 448 247 462 3.89e-22 99.4
Msa0694170 AT3G28740.1 26.267 217 155 2 230 445 256 468 3.98e-22 99.8
Msa0694170 AT1G11680.1 23.992 471 313 15 11 457 14 463 6.26e-22 99.0
Msa0694170 AT4G37400.1 27.755 245 160 5 215 449 228 465 9.07e-22 98.6
Msa0694170 AT2G26710.1 23.025 443 294 13 61 470 87 515 1.04e-21 98.2
Msa0694170 AT5G25120.1 25.420 476 297 17 7 444 6 461 1.08e-21 98.2
Msa0694170 AT4G37430.1 22.661 481 309 18 7 445 5 464 1.79e-21 97.4
Msa0694170 AT5G25140.1 24.421 475 304 16 6 444 6 461 3.40e-21 96.7
Msa0694170 AT2G23190.1 25.229 218 158 2 230 446 292 505 7.83e-21 95.9
Msa0694170 AT5G25180.1 23.890 473 314 15 6 444 1 461 1.65e-20 94.7
Msa0694170 AT3G20950.1 23.810 483 315 18 6 446 14 485 2.73e-20 94.0
Msa0694170 AT2G42250.1 24.490 490 321 14 3 448 1 485 3.68e-20 93.6
Msa0694170 AT5G24910.1 22.323 439 301 13 66 469 98 531 3.82e-20 93.6
Msa0694170 AT4G31500.1 24.268 478 314 16 3 444 1 466 6.79e-20 92.8
Msa0694170 AT1G66540.2 26.147 218 153 3 232 448 81 291 1.10e-19 90.1
Msa0694170 AT4G36220.1 22.624 442 296 10 44 444 47 483 1.55e-19 91.7
Msa0694170 AT1G66540.1 26.147 218 153 3 232 448 140 350 1.64e-19 90.5
Msa0694170 AT3G10560.1 22.874 494 320 16 4 454 17 492 2.15e-19 91.3
Msa0694170 AT3G61040.1 24.664 446 297 12 36 451 32 468 2.16e-19 91.3
Msa0694170 AT1G74110.1 23.114 411 258 14 83 446 112 511 2.18e-19 91.3
Msa0694170 AT4G37340.1 25.339 221 159 3 230 448 247 463 4.29e-19 90.1
Msa0694170 AT4G37360.1 27.273 198 139 2 252 448 270 463 5.26e-19 90.1
Msa0694170 AT4G15110.1 26.538 260 149 7 227 452 307 558 6.96e-19 90.1
Msa0694170 AT2G40890.1 23.701 481 297 18 8 442 5 461 1.03e-18 89.4
Msa0694170 AT5G42580.1 21.739 414 272 13 68 446 70 466 1.04e-18 89.0
Msa0694170 AT3G32047.1 23.800 479 313 14 7 446 13 478 1.68e-18 88.6
Msa0694170 AT2G28860.1 22.969 357 244 8 111 445 114 461 1.91e-18 88.2
Msa0694170 AT2G46660.1 23.341 437 291 16 39 442 72 497 2.43e-18 88.2
Msa0694170 AT5G06905.1 22.151 465 313 12 33 452 27 487 2.51e-18 88.2
Msa0694170 AT4G37410.1 25.941 239 162 5 215 445 230 461 7.13e-18 86.7
Msa0694170 AT3G03470.1 24.194 496 307 15 3 445 1 480 7.70e-18 86.7
Msa0694170 AT4G37330.1 25.688 218 157 2 230 446 245 458 8.12e-18 86.3
Msa0694170 AT5G25130.1 24.116 481 297 18 7 444 6 461 9.86e-18 86.3
Msa0694170 AT1G11610.2 23.894 452 308 15 31 452 27 472 1.25e-17 85.9
Msa0694170 AT1G11610.1 23.894 452 308 15 31 452 27 472 1.81e-17 85.1
Msa0694170 AT5G67310.1 23.395 483 303 17 3 443 12 469 2.42e-17 85.1
Msa0694170 AT2G23220.1 22.727 220 165 2 230 448 263 478 2.57e-17 84.7
Msa0694170 AT1G11600.1 22.541 488 315 14 4 442 5 478 4.58e-17 84.0
Msa0694170 AT1G31800.1 20.913 416 278 13 69 445 139 542 5.51e-17 84.0
Msa0694170 AT5G24900.1 21.995 441 301 11 62 466 90 523 5.92e-17 84.0
Msa0694170 AT2G28850.1 22.409 357 246 7 111 445 114 461 7.92e-17 83.2
Msa0694170 AT2G27010.1 22.010 418 285 13 68 458 66 469 8.42e-17 83.2
Msa0694170 AT5G24900.2 27.451 204 132 5 272 466 210 406 8.62e-17 82.8
Msa0694170 AT2G34500.1 22.543 346 232 10 111 432 113 446 8.72e-17 83.2
Msa0694170 AT2G45580.1 22.545 448 289 13 47 451 48 480 9.43e-17 83.2
Msa0694170 AT2G26170.1 22.667 450 284 12 39 436 47 484 1.02e-16 83.2
Msa0694170 AT1G50520.1 22.042 431 288 14 62 452 68 490 1.36e-16 82.8
Msa0694170 AT3G26310.1 23.222 478 317 18 3 444 1 464 2.64e-16 81.6
Msa0694170 AT2G24180.1 23.767 446 294 16 37 445 36 472 3.45e-16 81.3
Msa0694170 AT5G07990.1 22.129 479 328 15 6 446 1 472 4.13e-16 81.3
Msa0694170 AT2G45570.1 23.380 432 283 12 53 444 53 476 5.06e-16 80.9
Msa0694170 AT2G34490.1 21.649 485 338 16 5 462 15 484 6.33e-16 80.5
Msa0694170 AT3G52970.1 23.400 453 303 11 33 444 32 481 8.90e-16 80.1
Msa0694170 AT5G24950.1 22.944 462 309 16 29 454 24 474 8.96e-16 80.1
Msa0694170 AT5G36220.1 19.938 321 237 5 128 446 165 467 9.80e-16 80.1
Msa0694170 AT2G30750.1 24.619 459 309 17 24 452 21 472 1.04e-15 79.7
Msa0694170 AT4G37310.1 24.706 255 175 6 223 464 238 488 1.37e-15 79.7
Msa0694170 AT1G64940.1 23.228 508 297 20 6 448 5 484 2.14e-15 79.0
Msa0694170 AT5G36220.2 21.132 265 196 3 183 446 69 321 2.51e-15 77.8
Msa0694170 AT3G25180.1 23.430 414 273 14 62 440 65 469 6.13e-15 77.4
Msa0694170 AT4G31940.1 27.604 192 120 6 248 425 283 469 6.66e-15 77.4
Msa0694170 AT1G50560.1 24.498 249 168 6 214 446 241 485 7.07e-15 77.4
Msa0694170 AT3G52970.2 22.484 467 304 12 33 444 32 495 9.72e-15 77.0
Msa0694170 AT3G26190.1 25.056 447 275 17 33 430 24 459 1.12e-14 76.6
Msa0694170 AT3G26200.1 25.113 442 281 16 33 430 24 459 1.13e-14 76.6
Msa0694170 AT3G26280.1 23.326 463 307 17 22 444 17 471 1.59e-14 76.3
Msa0694170 AT4G31950.1 26.484 219 136 7 227 425 244 457 1.85e-14 75.9
Msa0694170 AT1G13710.1 23.241 469 276 20 37 442 35 482 2.03e-14 75.9
Msa0694170 AT3G26280.2 23.326 463 307 17 22 444 34 488 2.03e-14 75.9
Msa0694170 AT1G28430.1 22.785 237 165 4 230 452 253 485 2.53e-14 75.5
Msa0694170 AT1G64930.1 29.353 201 122 7 261 448 291 484 3.69e-14 75.1
Msa0694170 AT2G45580.2 24.180 244 163 5 223 451 90 326 9.58e-14 72.8
Msa0694170 AT2G45550.1 24.510 204 144 3 247 444 276 475 9.61e-14 73.9
Msa0694170 AT4G12330.1 22.642 424 287 11 57 444 63 481 1.10e-13 73.6
Msa0694170 AT3G44250.1 24.667 450 272 19 33 430 24 458 1.47e-13 73.2
Msa0694170 AT4G13290.1 23.851 457 294 17 24 444 20 458 1.48e-13 73.2
Msa0694170 AT2G26170.2 27.119 236 151 5 215 436 173 401 1.57e-13 72.8
Msa0694170 AT3G20935.1 26.404 178 117 2 279 446 134 307 1.67e-13 72.0
Msa0694170 AT2G46950.1 22.444 401 280 12 66 441 146 540 2.19e-13 72.8
Msa0694170 AT4G15360.1 21.384 477 333 13 2 444 8 476 2.35e-13 72.8
Msa0694170 AT1G01190.1 22.318 466 298 17 20 442 55 499 3.84e-13 72.0
Msa0694170 AT1G64950.1 28.922 204 125 6 257 448 288 483 4.44e-13 71.6
Msa0694170 AT1G01190.2 22.318 466 298 17 20 442 60 504 4.79e-13 71.6
Msa0694170 AT3G53300.1 21.384 477 307 18 34 462 25 481 6.56e-13 71.2
Msa0694170 AT5G05260.2 19.804 510 342 16 3 454 2 502 8.64e-13 70.9
Msa0694170 AT4G22710.1 22.434 419 281 12 62 444 78 488 9.90e-13 70.5
Msa0694170 AT3G26160.1 22.353 425 290 14 37 425 30 450 1.42e-12 70.1
Msa0694170 AT1G33730.1 25.431 232 161 6 221 444 112 339 1.46e-12 69.3
Msa0694170 AT1G33730.2 25.431 232 161 6 221 444 112 339 1.46e-12 69.3
Msa0694170 AT3G20100.1 22.059 476 329 16 8 446 11 481 2.81e-12 69.3
Msa0694170 AT1G34540.1 21.814 408 267 14 83 448 77 474 5.58e-12 68.2
Msa0694170 AT4G22690.1 22.196 419 282 12 62 444 109 519 6.24e-12 68.2
Msa0694170 AT3G26150.1 22.269 238 163 5 248 466 266 500 6.59e-12 68.2
Msa0694170 AT3G20120.4 20.000 415 290 12 68 446 72 480 7.44e-12 67.8
Msa0694170 AT4G12320.1 24.757 206 139 5 250 444 281 481 1.94e-11 66.6
Msa0694170 AT1G75130.1 23.560 382 254 13 69 425 89 457 9.42e-11 64.3

Find 144 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAAATTTACCTAAATT+TGG 0.175919 4_4:-63463900 None:intergenic
ATCAATTTCTTGATTGATTC+AGG 0.185642 4_4:-63462046 None:intergenic
AATAAGCTTCTCTTTGCTTT+TGG 0.189516 4_4:-63461948 None:intergenic
GATGTTCCGGGTATCTTATT+TGG 0.196265 4_4:-63462597 None:intergenic
CTTAAGCTGTTCTCTATAAT+TGG 0.196410 4_4:-63462535 None:intergenic
AAAAGCAAAGAGAAGCTTAT+TGG 0.203855 4_4:+63461950 Msa0694170:CDS
TAAAATCAACATGTTCAATT+TGG 0.206623 4_4:-63463861 None:intergenic
CTAAACTACAAGGATGAAAA+AGG 0.227377 4_4:+63462873 Msa0694170:CDS
AACAAACCTTCTTCATTTCA+TGG 0.245371 4_4:-63462141 None:intergenic
GGATTGGGAATGGGCTATAT+TGG 0.245695 4_4:-63464052 None:intergenic
TTGTATTGTGTAGGTAATAT+TGG 0.249201 4_4:+63463357 Msa0694170:intron
GCATCATATCATTCACGTTT+AGG 0.258699 4_4:+63463398 Msa0694170:CDS
ATCATACTCCAAAGCTCTTT+TGG 0.265661 4_4:+63462617 Msa0694170:CDS
TGTGTCATCAACTGATATTT+TGG 0.269091 4_4:+63464375 Msa0694170:three_prime_UTR
TGAAAAGTTTCTCCTATATA+AGG 0.274969 4_4:-63461652 None:intergenic
TTATGGCTTCAAGAAGTTTC+GGG 0.279952 4_4:-63463007 None:intergenic
TGAGGAGCAGGGTAGAATTC+TGG 0.289769 4_4:-63463624 None:intergenic
CATCATATCATTCACGTTTA+GGG 0.289792 4_4:+63463399 Msa0694170:CDS
TTAGAAGCAAAGAAGATGTT+AGG 0.291777 4_4:-63461691 None:intergenic
ATTTAATTTGAAGACTAATC+TGG 0.295395 4_4:+63464469 Msa0694170:three_prime_UTR
TTGCTACACTTGCATGTATA+TGG 0.301879 4_4:+63461507 Msa0694170:exon
GTTTGGCAGGTGGGAGGTAG+TGG 0.304492 4_4:+63464013 Msa0694170:intron
AGCTTTGGAGTATGATGTTC+CGG 0.315647 4_4:-63462610 None:intergenic
AATGAACCTGGAGGAAGTTT+AGG 0.317092 4_4:-63461622 None:intergenic
CCAAATGGCATAAAAGTATT+GGG 0.318496 4_4:-63463803 None:intergenic
ATATTTAAGACACACATATT+AGG 0.320706 4_4:+63461842 Msa0694170:CDS
ATCATCTAGTAACCAAATTT+AGG 0.324641 4_4:+63463888 Msa0694170:CDS
CTACAGCTAGTGTTCTTACT+TGG 0.327558 4_4:+63462961 Msa0694170:CDS
CCTCTCTGTCTTTGGTAACT+TGG 0.334282 4_4:+63462509 Msa0694170:CDS
TTTATGGCTTCAAGAAGTTT+CGG 0.334949 4_4:-63463008 None:intergenic
ATGTTCCGGGTATCTTATTT+GGG 0.340127 4_4:-63462596 None:intergenic
CATGCAAGTGTAGCAACTTT+GGG 0.340727 4_4:-63461500 None:intergenic
AGCAACTTTGGGGTAGTTGC+AGG 0.343546 4_4:-63461489 None:intergenic
TAAACTTCCTCCAGGTTCAT+TGG 0.346471 4_4:+63461624 Msa0694170:CDS
AAATCTTTGTGTGGATGATA+TGG 0.359717 4_4:-63461449 None:intergenic
AAGGTCTACCCACAAGATTT+TGG 0.363059 4_4:+63464081 Msa0694170:CDS
AATTTGGCTAGCTCATTTCC+TGG 0.372245 4_4:-63463845 None:intergenic
GTCGGGATCCTCTCTGTCTT+TGG 0.372445 4_4:+63462501 Msa0694170:CDS
TCATTGGGTTGGCCTTATAT+AGG 0.376295 4_4:+63461640 Msa0694170:CDS
GGCAGTTCTCTTTCAATGTC+GGG 0.378579 4_4:+63462484 Msa0694170:intron
TTCCTCCAGGTTCATTGGGT+TGG 0.381628 4_4:+63461629 Msa0694170:CDS
GGCATAAAAGTATTGGGCTT+TGG 0.388055 4_4:-63463797 None:intergenic
GGCATTACTTTCCAACCCTT+TGG 0.388434 4_4:-63463576 None:intergenic
TTGAATGAGAAGGATCTATT+AGG 0.391625 4_4:+63462843 Msa0694170:CDS
TAAATTTGGTTACTAGATGA+TGG 0.399270 4_4:-63463886 None:intergenic
GAAGCTTACCAAAAGAGCTT+TGG 0.399481 4_4:-63462625 None:intergenic
TTATTGAATTTCTTTATGAA+TGG 0.400718 4_4:-63461580 None:intergenic
ACATGCAAGTGTAGCAACTT+TGG 0.401108 4_4:-63461501 None:intergenic
GCCAAATGGCATAAAAGTAT+TGG 0.401232 4_4:-63463804 None:intergenic
CGCTTTCCATGAAATGAAGA+AGG 0.401375 4_4:+63462135 Msa0694170:CDS
GGTAGACCTTGCTGAGGGAT+TGG 0.409632 4_4:-63464068 None:intergenic
TAGTATACCTCAAATCTTGA+TGG 0.414171 4_4:-63463657 None:intergenic
AAACTTCCTCCAGGTTCATT+GGG 0.414333 4_4:+63461625 Msa0694170:CDS
ATGAGAGAAAGATGAGGAAG+AGG 0.416062 4_4:-63461543 None:intergenic
CATCCTTGTAGTTTAGCAAA+TGG 0.417428 4_4:-63462866 None:intergenic
AGGGAAAATGTTAACTGATA+AGG 0.417614 4_4:+63462893 Msa0694170:CDS
TCATTTCCTCACTAGAATCC+TGG 0.422005 4_4:+63462089 Msa0694170:CDS
ACCTGGAGGAAGTTTAGGTT+TGG 0.430894 4_4:-63461617 None:intergenic
CATATTACAGGCTGAGCAAA+TGG 0.441567 4_4:+63463132 Msa0694170:intron
TTTGGCAGGTGGGAGGTAGT+GGG 0.445491 4_4:+63464014 Msa0694170:intron
CATACCTATTCTATTGTAAA+GGG 0.446010 4_4:+63464289 Msa0694170:three_prime_UTR
AATCAAATGAGATCAATGTT+GGG 0.446309 4_4:-63464180 None:intergenic
GAAGTTGCTGATAATGTCAT+TGG 0.447481 4_4:+63462915 Msa0694170:CDS
AAATATGCCACTTACTCATA+AGG 0.449078 4_4:+63463210 Msa0694170:CDS
TTTATCTGACCCCATGTCAA+TGG 0.449977 4_4:-63463187 None:intergenic
TGGAATCTTCCCTCCATCAT+TGG 0.450558 4_4:-63463167 None:intergenic
GTAGACCTTGCTGAGGGATT+GGG 0.450729 4_4:-63464067 None:intergenic
ACATACCTATTCTATTGTAA+AGG 0.451493 4_4:+63464288 Msa0694170:three_prime_UTR
CATATAGGTATGAAGGTACT+AGG 0.455239 4_4:-63464239 None:intergenic
TTCTAAGCATATAGGTATGA+AGG 0.457842 4_4:-63464246 None:intergenic
GCGATTACCACACTCGTATC+CGG 0.457932 4_4:+63461999 Msa0694170:CDS
GGGGTAGTTGCAGGCGTAGA+AGG 0.459916 4_4:-63461480 None:intergenic
GCTTTGGAGTATGATGTTCC+GGG 0.462286 4_4:-63462609 None:intergenic
GGGTCAAAATTATGAGGAGC+AGG 0.462427 4_4:-63463636 None:intergenic
GAATCAAATGAGATCAATGT+TGG 0.463221 4_4:-63464181 None:intergenic
TGGCAGTTCTCTTTCAATGT+CGG 0.465740 4_4:+63462483 Msa0694170:intron
ATATGATGCTTGACATCCTT+AGG 0.466886 4_4:-63463384 None:intergenic
CATTTCCTCACTAGAATCCT+GGG 0.467464 4_4:+63462090 Msa0694170:CDS
TTTGATTCTCCAAAATCTTG+TGG 0.468913 4_4:-63464090 None:intergenic
TGAGATAATTTGCAAGAGAA+AGG 0.471556 4_4:+63462812 Msa0694170:CDS
AACACAAATCTTGCAGCCTC+AGG 0.480772 4_4:-63461890 None:intergenic
CAATTATAGAGAACAGCTTA+AGG 0.481085 4_4:+63462536 Msa0694170:CDS
CCTTGCTGAGGGATTGGGAA+TGG 0.487232 4_4:-63464062 None:intergenic
TACCATACCTTATGAGTAAG+TGG 0.488143 4_4:-63463217 None:intergenic
GATATTTAATACCAAAGGGT+TGG 0.489000 4_4:+63463565 Msa0694170:CDS
TTGATTCTCCAAAATCTTGT+GGG 0.489166 4_4:-63464089 None:intergenic
AGGAAGTTTAGGTTTGGCTA+TGG 0.490163 4_4:-63461611 None:intergenic
CTTGCTGAGGGATTGGGAAT+GGG 0.490233 4_4:-63464061 None:intergenic
CTTGATGGGTCAAAATTATG+AGG 0.491919 4_4:-63463642 None:intergenic
TAGAAGCAAAGAAGATGTTA+GGG 0.494475 4_4:-63461690 None:intergenic
TCAAGGATATTTAATACCAA+AGG 0.499241 4_4:+63463560 Msa0694170:intron
CAAGGATATTTAATACCAAA+GGG 0.500893 4_4:+63463561 Msa0694170:intron
AATGGAGTGCACTCATGTCC+AGG 0.511845 4_4:+63463827 Msa0694170:CDS
GGTAGAATTCTGGATTATGA+TGG 0.525486 4_4:-63463614 None:intergenic
GCCAAACCTAAACTTCCTCC+AGG 0.527470 4_4:+63461616 Msa0694170:CDS
TTTACTACCACTTACATACT+CGG 0.528872 4_4:-63464346 None:intergenic
GCCACCCTTTACAATAGAAT+AGG 0.535094 4_4:-63464293 None:intergenic
TAAGGCCAACCCAATGAACC+TGG 0.538206 4_4:-63461634 None:intergenic
TGTGTGGATGATATGGTTCA+AGG 0.538502 4_4:-63461442 None:intergenic
AGGCCATTTGCTAAACTACA+AGG 0.540203 4_4:+63462863 Msa0694170:CDS
GAGTGCACTCCATTGCCAAA+TGG 0.545280 4_4:-63463818 None:intergenic
TACGAGTGTGGTAATCGCCT+TGG 0.548799 4_4:-63461994 None:intergenic
AGATCAATGTTGGGGTGGCA+AGG 0.558406 4_4:-63464171 None:intergenic
TGAGGCTGCAAGATTTGTGT+TGG 0.565849 4_4:+63461892 Msa0694170:CDS
ACACACATATAGACCTATGT+TGG 0.566391 4_4:-63464515 None:intergenic
AATTAATCCGAGTATGTAAG+TGG 0.566464 4_4:+63464339 Msa0694170:three_prime_UTR
AGGTAATATTGGAAAGCCTA+AGG 0.566695 4_4:+63463368 Msa0694170:intron
GAGGGAAGATTCCATTGACA+TGG 0.569287 4_4:+63463176 Msa0694170:CDS
GGAGCAGAGATTGAATGAGA+AGG 0.573774 4_4:+63462833 Msa0694170:CDS
AATTACTGCATAGTAGAGAA+AGG 0.574763 4_4:+63462561 Msa0694170:CDS
AGTATACCTCAAATCTTGAT+GGG 0.581207 4_4:-63463656 None:intergenic
TCTTTATGAATGGATATGAG+AGG 0.581633 4_4:-63461570 None:intergenic
CATACTCGGATTAATTGACA+TGG 0.587601 4_4:-63464332 None:intergenic
GGAGAGATGAGAGAAAGATG+AGG 0.587664 4_4:-63461549 None:intergenic
ACCTATTCTATTGTAAAGGG+TGG 0.599372 4_4:+63464292 Msa0694170:three_prime_UTR
TGTGGTTGATGTGGTATACA+AGG 0.599457 4_4:+63463426 Msa0694170:CDS
ATCAAATGAGATCAATGTTG+GGG 0.613062 4_4:-63464179 None:intergenic
AAATGAGATCAATGTTGGGG+TGG 0.614190 4_4:-63464176 None:intergenic
GCAGTATGTGATACCAATGA+TGG 0.615249 4_4:+63463154 Msa0694170:CDS
CGAGTTTCCGGATACGAGTG+TGG 0.617194 4_4:-63462006 None:intergenic
GTATGTGATACCAATGATGG+AGG 0.619371 4_4:+63463157 Msa0694170:CDS
ATTCACGTTTAGGGAAGCTG+TGG 0.619792 4_4:+63463408 Msa0694170:CDS
TAGGGAAGCTGTGGTTGATG+TGG 0.623756 4_4:+63463417 Msa0694170:CDS
TCTTTCCCAAATAAGATACC+CGG 0.625072 4_4:+63462591 Msa0694170:CDS
AGGGAAGATTCCATTGACAT+GGG 0.626500 4_4:+63463177 Msa0694170:CDS
TTGTGGGTAGACCTTGCTGA+GGG 0.629302 4_4:-63464073 None:intergenic
GAGGTAGTGGGATATCAAAG+TGG 0.640983 4_4:+63464026 Msa0694170:CDS
ATGCAAGTGTAGCAACTTTG+GGG 0.643483 4_4:-63461499 None:intergenic
ATATTTGTTTGGCAGGTGGG+AGG 0.645744 4_4:+63464007 Msa0694170:intron
CTTGTGGGTAGACCTTGCTG+AGG 0.655922 4_4:-63464074 None:intergenic
GGACTTGTTAACATCACACA+TGG 0.656256 4_4:-63461869 None:intergenic
TGGATGATATGGTTCAAGGC+AGG 0.657396 4_4:-63461438 None:intergenic
TCTGCATTATTCTTTCACCA+AGG 0.665160 4_4:+63461977 Msa0694170:CDS
TATGTGATACCAATGATGGA+GGG 0.670681 4_4:+63463158 Msa0694170:CDS
GGTCAAAATTATGAGGAGCA+GGG 0.673511 4_4:-63463635 None:intergenic
CCATTCCCAATCCCTCAGCA+AGG 0.677459 4_4:+63464062 Msa0694170:CDS
TGATGGATGTTTCTGAACAG+TGG 0.679204 4_4:-63463597 None:intergenic
GAAACTGCGAAATCTTTGTG+TGG 0.684889 4_4:-63461458 None:intergenic
CCAAGTTACCAAAGACAGAG+AGG 0.687120 4_4:-63462509 None:intergenic
ATTGTCTAAATTAGGCGAGG+CGG 0.689320 4_4:+63462769 Msa0694170:intron
GGGAAGATTCCATTGACATG+GGG 0.697651 4_4:+63463178 Msa0694170:CDS
GGCCAACCCAATGAACCTGG+AGG 0.704247 4_4:-63461631 None:intergenic
TGTGATGTTAACAAGTCCTG+AGG 0.742960 4_4:+63461874 Msa0694170:CDS
GTGGTTGATGTGGTATACAA+GGG 0.754107 4_4:+63463427 Msa0694170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATTTTTATATAT+AGG + chr4_4:63462276-63462295 Msa0694170:intron 0.0%
!! AAATAATTTACATATGATTA+AGG - chr4_4:63461740-63461759 None:intergenic 10.0%
!!! TAATCATATGTAAATTATTT+TGG + chr4_4:63461740-63461759 Msa0694170:intron 10.0%
!!! AATCATATGTAAATTATTTT+GGG + chr4_4:63461741-63461760 Msa0694170:intron 10.0%
!!! TTTATTTTTATATATAGGAT+CGG + chr4_4:63462281-63462300 Msa0694170:intron 10.0%
!! AATTTAAATTTACCTAAATT+TGG - chr4_4:63463903-63463922 None:intergenic 10.0%
!! TTATTGAATTTCTTTATGAA+TGG - chr4_4:63461583-63461602 None:intergenic 15.0%
!! TACGATATATAAACATATAA+AGG + chr4_4:63462310-63462329 Msa0694170:intron 15.0%
!! AATATAACTTGACTAAAAAT+TGG + chr4_4:63462742-63462761 Msa0694170:intron 15.0%
!!! TTAATCTTTTGTACATTTAT+AGG + chr4_4:63463467-63463486 Msa0694170:intron 15.0%
!! ATATATATACATATATGACT+AGG - chr4_4:63463717-63463736 None:intergenic 15.0%
!! TATTTATGCTTATGAATATA+TGG + chr4_4:63463754-63463773 Msa0694170:intron 15.0%
!! ATTGCATTATGAATAAAATA+TGG - chr4_4:63463954-63463973 None:intergenic 15.0%
!!! CATCATATAATAATTTTCTT+TGG - chr4_4:63464121-63464140 None:intergenic 15.0%
!! ATATTGATCATAATCAGATA+TGG + chr4_4:63461815-63461834 Msa0694170:intron 20.0%
!!! ATATTTAAGACACACATATT+AGG + chr4_4:63461842-63461861 Msa0694170:CDS 20.0%
!! GATGAAATATATTGTCTTAT+TGG + chr4_4:63462353-63462372 Msa0694170:intron 20.0%
!!! TGAATTTTGTTTTCATTTGT+CGG + chr4_4:63462394-63462413 Msa0694170:intron 20.0%
!! TTGGTTAAATTGTCTAAATT+AGG + chr4_4:63462761-63462780 Msa0694170:intron 20.0%
!!! ATATTGATTTTCAAAACTGA+GGG - chr4_4:63463079-63463098 None:intergenic 20.0%
!!! AATATTGATTTTCAAAACTG+AGG - chr4_4:63463080-63463099 None:intergenic 20.0%
!! TAATAAACTGTACATATTAC+AGG + chr4_4:63463120-63463139 Msa0694170:intron 20.0%
!! TAAAATCAACATGTTCAATT+TGG - chr4_4:63463864-63463883 None:intergenic 20.0%
!!! ATTTAATTTGAAGACTAATC+TGG + chr4_4:63464469-63464488 Msa0694170:three_prime_UTR 20.0%
! TGAAAAGTTTCTCCTATATA+AGG - chr4_4:63461655-63461674 None:intergenic 25.0%
! TCTTTGCTTCTAAACAAAAA+AGG + chr4_4:63461701-63461720 Msa0694170:CDS 25.0%
!!! GGGTTAGCTTAATTAATTAT+TGG + chr4_4:63461761-63461780 Msa0694170:intron 25.0%
!! ATCAATTTCTTGATTGATTC+AGG - chr4_4:63462049-63462068 None:intergenic 25.0%
!! TGACTTCATTTTCAATATCA+GGG - chr4_4:63462072-63462091 None:intergenic 25.0%
!! ATGACTTCATTTTCAATATC+AGG - chr4_4:63462073-63462092 None:intergenic 25.0%
! GTGACAATAAATTCATGATT+CGG - chr4_4:63462421-63462440 None:intergenic 25.0%
! AATCATGAATTTATTGTCAC+TGG + chr4_4:63462421-63462440 Msa0694170:intron 25.0%
! ATCATGAATTTATTGTCACT+GGG + chr4_4:63462422-63462441 Msa0694170:intron 25.0%
! TAAACTACAAGGATGAAAAA+GGG + chr4_4:63462874-63462893 Msa0694170:CDS 25.0%
!!! GACAAAAACTCTTACTTTTA+TGG - chr4_4:63463027-63463046 None:intergenic 25.0%
! AAATATATACTATGCATGCA+TGG + chr4_4:63463251-63463270 Msa0694170:intron 25.0%
!! GTAAATAACTTGTATTGTGT+AGG + chr4_4:63463348-63463367 Msa0694170:intron 25.0%
! TTGTATTGTGTAGGTAATAT+TGG + chr4_4:63463357-63463376 Msa0694170:intron 25.0%
! TCAAGGATATTTAATACCAA+AGG + chr4_4:63463560-63463579 Msa0694170:intron 25.0%
! CAAGGATATTTAATACCAAA+GGG + chr4_4:63463561-63463580 Msa0694170:intron 25.0%
! TATATACATATATGACTAGG+TGG - chr4_4:63463714-63463733 None:intergenic 25.0%
!! CTTATGAATATATGGATTGA+TGG + chr4_4:63463762-63463781 Msa0694170:intron 25.0%
! TAAATTTGGTTACTAGATGA+TGG - chr4_4:63463889-63463908 None:intergenic 25.0%
! ATCATCTAGTAACCAAATTT+AGG + chr4_4:63463888-63463907 Msa0694170:CDS 25.0%
! AATCAAATGAGATCAATGTT+GGG - chr4_4:63464183-63464202 None:intergenic 25.0%
!!! TTCTTTTGTTCTAAGCATAT+AGG - chr4_4:63464257-63464276 None:intergenic 25.0%
! ACATACCTATTCTATTGTAA+AGG + chr4_4:63464288-63464307 Msa0694170:three_prime_UTR 25.0%
! CATACCTATTCTATTGTAAA+GGG + chr4_4:63464289-63464308 Msa0694170:three_prime_UTR 25.0%
!!! ATCAACTGATATTTTGGTTT+TGG + chr4_4:63464381-63464400 Msa0694170:three_prime_UTR 25.0%
AAATCTTTGTGTGGATGATA+TGG - chr4_4:63461452-63461471 None:intergenic 30.0%
TCTTTATGAATGGATATGAG+AGG - chr4_4:63461573-63461592 None:intergenic 30.0%
TAGAAGCAAAGAAGATGTTA+GGG - chr4_4:63461693-63461712 None:intergenic 30.0%
TTAGAAGCAAAGAAGATGTT+AGG - chr4_4:63461694-63461713 None:intergenic 30.0%
!! ATAAGCTTCTCTTTGCTTTT+GGG - chr4_4:63461950-63461969 None:intergenic 30.0%
! AATAAGCTTCTCTTTGCTTT+TGG - chr4_4:63461951-63461970 None:intergenic 30.0%
AAAAGCAAAGAGAAGCTTAT+TGG + chr4_4:63461950-63461969 Msa0694170:CDS 30.0%
AACAAACCTTCTTCATTTCA+TGG - chr4_4:63462144-63462163 None:intergenic 30.0%
TCCTTCATTATTGTTTGGTT+TGG + chr4_4:63462451-63462470 Msa0694170:intron 30.0%
ACCAAACCAAACAATAATGA+AGG - chr4_4:63462455-63462474 None:intergenic 30.0%
!! GTTTGGTTTGGTTTGATTAT+TGG + chr4_4:63462463-63462482 Msa0694170:intron 30.0%
CTTAAGCTGTTCTCTATAAT+TGG - chr4_4:63462538-63462557 None:intergenic 30.0%
CAATTATAGAGAACAGCTTA+AGG + chr4_4:63462536-63462555 Msa0694170:CDS 30.0%
AATTACTGCATAGTAGAGAA+AGG + chr4_4:63462561-63462580 Msa0694170:CDS 30.0%
TAAATTGTCTAAATTAGGCG+AGG + chr4_4:63462766-63462785 Msa0694170:intron 30.0%
! TGAGATAATTTGCAAGAGAA+AGG + chr4_4:63462812-63462831 Msa0694170:CDS 30.0%
TTGAATGAGAAGGATCTATT+AGG + chr4_4:63462843-63462862 Msa0694170:CDS 30.0%
CTAAACTACAAGGATGAAAA+AGG + chr4_4:63462873-63462892 Msa0694170:CDS 30.0%
AGGGAAAATGTTAACTGATA+AGG + chr4_4:63462893-63462912 Msa0694170:CDS 30.0%
TTTATGGCTTCAAGAAGTTT+CGG - chr4_4:63463011-63463030 None:intergenic 30.0%
! AAGAGTTTTTGTCTCTATCA+TGG + chr4_4:63463034-63463053 Msa0694170:intron 30.0%
ATGGATTTCCTATTCCTTAT+TGG + chr4_4:63463053-63463072 Msa0694170:intron 30.0%
! AAATATGCCACTTACTCATA+AGG + chr4_4:63463210-63463229 Msa0694170:CDS 30.0%
CATCATATCATTCACGTTTA+GGG + chr4_4:63463399-63463418 Msa0694170:CDS 30.0%
! ACAAGGGTAAGAATTTTAGA+CGG + chr4_4:63463443-63463462 Msa0694170:intron 30.0%
GATATTTAATACCAAAGGGT+TGG + chr4_4:63463565-63463584 Msa0694170:CDS 30.0%
AGTATACCTCAAATCTTGAT+GGG - chr4_4:63463659-63463678 None:intergenic 30.0%
TAGTATACCTCAAATCTTGA+TGG - chr4_4:63463660-63463679 None:intergenic 30.0%
!! CCAAATGGCATAAAAGTATT+GGG - chr4_4:63463806-63463825 None:intergenic 30.0%
GGTTGTGTTCAATATTTGTT+TGG + chr4_4:63463996-63464015 Msa0694170:intron 30.0%
TTGATTCTCCAAAATCTTGT+GGG - chr4_4:63464092-63464111 None:intergenic 30.0%
TTTGATTCTCCAAAATCTTG+TGG - chr4_4:63464093-63464112 None:intergenic 30.0%
ATCAAATGAGATCAATGTTG+GGG - chr4_4:63464182-63464201 None:intergenic 30.0%
GAATCAAATGAGATCAATGT+TGG - chr4_4:63464184-63464203 None:intergenic 30.0%
TTCTAAGCATATAGGTATGA+AGG - chr4_4:63464249-63464268 None:intergenic 30.0%
AATTAATCCGAGTATGTAAG+TGG + chr4_4:63464339-63464358 Msa0694170:three_prime_UTR 30.0%
TTTACTACCACTTACATACT+CGG - chr4_4:63464349-63464368 None:intergenic 30.0%
! TGTGTCATCAACTGATATTT+TGG + chr4_4:63464375-63464394 Msa0694170:three_prime_UTR 30.0%
TTGCTACACTTGCATGTATA+TGG + chr4_4:63461507-63461526 Msa0694170:exon 35.0%
!!! TCTTTGCTTTTGGGATATGT+AGG - chr4_4:63461941-63461960 None:intergenic 35.0%
TCTGCATTATTCTTTCACCA+AGG + chr4_4:63461977-63461996 Msa0694170:CDS 35.0%
! CTAGAATCCTGGGTTTTTAT+TGG + chr4_4:63462100-63462119 Msa0694170:CDS 35.0%
CCAAACAATAATGAAGGAGA+AGG - chr4_4:63462449-63462468 None:intergenic 35.0%
CCTTCTCCTTCATTATTGTT+TGG + chr4_4:63462446-63462465 Msa0694170:intron 35.0%
TCTTTCCCAAATAAGATACC+CGG + chr4_4:63462591-63462610 Msa0694170:CDS 35.0%
! ATGTTCCGGGTATCTTATTT+GGG - chr4_4:63462599-63462618 None:intergenic 35.0%
! ATCATACTCCAAAGCTCTTT+TGG + chr4_4:63462617-63462636 Msa0694170:CDS 35.0%
CATCCTTGTAGTTTAGCAAA+TGG - chr4_4:63462869-63462888 None:intergenic 35.0%
! GAAGTTGCTGATAATGTCAT+TGG + chr4_4:63462915-63462934 Msa0694170:CDS 35.0%
TTATGGCTTCAAGAAGTTTC+GGG - chr4_4:63463010-63463029 None:intergenic 35.0%
! TATGTGATACCAATGATGGA+GGG + chr4_4:63463158-63463177 Msa0694170:CDS 35.0%
TACCATACCTTATGAGTAAG+TGG - chr4_4:63463220-63463239 None:intergenic 35.0%
AGGTAATATTGGAAAGCCTA+AGG + chr4_4:63463368-63463387 Msa0694170:intron 35.0%
ATATGATGCTTGACATCCTT+AGG - chr4_4:63463387-63463406 None:intergenic 35.0%
GCATCATATCATTCACGTTT+AGG + chr4_4:63463398-63463417 Msa0694170:CDS 35.0%
GTTCTTTGATGCAACTATCA+AGG + chr4_4:63463543-63463562 Msa0694170:intron 35.0%
GGTAGAATTCTGGATTATGA+TGG - chr4_4:63463617-63463636 None:intergenic 35.0%
! CTTGATGGGTCAAAATTATG+AGG - chr4_4:63463645-63463664 None:intergenic 35.0%
! TTTTGACCCATCAAGATTTG+AGG + chr4_4:63463650-63463669 Msa0694170:CDS 35.0%
ATACATATATGACTAGGTGG+TGG - chr4_4:63463711-63463730 None:intergenic 35.0%
! CCCAATACTTTTATGCCATT+TGG + chr4_4:63463803-63463822 Msa0694170:CDS 35.0%
! GCCAAATGGCATAAAAGTAT+TGG - chr4_4:63463807-63463826 None:intergenic 35.0%
!! ACTTTTATGCCATTTGGCAA+TGG + chr4_4:63463809-63463828 Msa0694170:CDS 35.0%
GTGTTCAATATTTGTTTGGC+AGG + chr4_4:63464000-63464019 Msa0694170:intron 35.0%
TTCAATATTTGTTTGGCAGG+TGG + chr4_4:63464003-63464022 Msa0694170:intron 35.0%
TCAATATTTGTTTGGCAGGT+GGG + chr4_4:63464004-63464023 Msa0694170:intron 35.0%
!! CATATAGGTATGAAGGTACT+AGG - chr4_4:63464242-63464261 None:intergenic 35.0%
ACCTATTCTATTGTAAAGGG+TGG + chr4_4:63464292-63464311 Msa0694170:three_prime_UTR 35.0%
CATACTCGGATTAATTGACA+TGG - chr4_4:63464335-63464354 None:intergenic 35.0%
TGTGTGGATGATATGGTTCA+AGG - chr4_4:63461445-63461464 None:intergenic 40.0%
GAAACTGCGAAATCTTTGTG+TGG - chr4_4:63461461-63461480 None:intergenic 40.0%
ATGCAAGTGTAGCAACTTTG+GGG - chr4_4:63461502-63461521 None:intergenic 40.0%
CATGCAAGTGTAGCAACTTT+GGG - chr4_4:63461503-63461522 None:intergenic 40.0%
ACATGCAAGTGTAGCAACTT+TGG - chr4_4:63461504-63461523 None:intergenic 40.0%
ATGAGAGAAAGATGAGGAAG+AGG - chr4_4:63461546-63461565 None:intergenic 40.0%
! AGGAAGTTTAGGTTTGGCTA+TGG - chr4_4:63461614-63461633 None:intergenic 40.0%
AATGAACCTGGAGGAAGTTT+AGG - chr4_4:63461625-63461644 None:intergenic 40.0%
TAAACTTCCTCCAGGTTCAT+TGG + chr4_4:63461624-63461643 Msa0694170:CDS 40.0%
AAACTTCCTCCAGGTTCATT+GGG + chr4_4:63461625-63461644 Msa0694170:CDS 40.0%
!! TCATTGGGTTGGCCTTATAT+AGG + chr4_4:63461640-63461659 Msa0694170:CDS 40.0%
!! GGACTTGTTAACATCACACA+TGG - chr4_4:63461872-63461891 None:intergenic 40.0%
TGTGATGTTAACAAGTCCTG+AGG + chr4_4:63461874-63461893 Msa0694170:CDS 40.0%
!! GAGAGTTTTGTACGAGTTTC+CGG - chr4_4:63462021-63462040 None:intergenic 40.0%
TCATTTCCTCACTAGAATCC+TGG + chr4_4:63462089-63462108 Msa0694170:CDS 40.0%
CATTTCCTCACTAGAATCCT+GGG + chr4_4:63462090-63462109 Msa0694170:CDS 40.0%
AAAAACCCAGGATTCTAGTG+AGG - chr4_4:63462098-63462117 None:intergenic 40.0%
GACTTGTCCAATAAAAACCC+AGG - chr4_4:63462110-63462129 None:intergenic 40.0%
CGCTTTCCATGAAATGAAGA+AGG + chr4_4:63462135-63462154 Msa0694170:CDS 40.0%
TGGCAGTTCTCTTTCAATGT+CGG + chr4_4:63462483-63462502 Msa0694170:intron 40.0%
GATGTTCCGGGTATCTTATT+TGG - chr4_4:63462600-63462619 None:intergenic 40.0%
!! AGCTTTGGAGTATGATGTTC+CGG - chr4_4:63462613-63462632 None:intergenic 40.0%
GAAGCTTACCAAAAGAGCTT+TGG - chr4_4:63462628-63462647 None:intergenic 40.0%
! CTTCAATGCAGTGCAACTTT+TGG + chr4_4:63462644-63462663 Msa0694170:intron 40.0%
TCGATCACTAACTGCAATTG+CGG + chr4_4:63462696-63462715 Msa0694170:intron 40.0%
ATTGTCTAAATTAGGCGAGG+CGG + chr4_4:63462769-63462788 Msa0694170:intron 40.0%
! AGGCCATTTGCTAAACTACA+AGG + chr4_4:63462863-63462882 Msa0694170:CDS 40.0%
CTACAGCTAGTGTTCTTACT+TGG + chr4_4:63462961-63462980 Msa0694170:CDS 40.0%
TTCAAAACTGAGGGCCAATA+AGG - chr4_4:63463070-63463089 None:intergenic 40.0%
CATATTACAGGCTGAGCAAA+TGG + chr4_4:63463132-63463151 Msa0694170:intron 40.0%
GCAGTATGTGATACCAATGA+TGG + chr4_4:63463154-63463173 Msa0694170:CDS 40.0%
GTATGTGATACCAATGATGG+AGG + chr4_4:63463157-63463176 Msa0694170:CDS 40.0%
AGGGAAGATTCCATTGACAT+GGG + chr4_4:63463177-63463196 Msa0694170:CDS 40.0%
TTTATCTGACCCCATGTCAA+TGG - chr4_4:63463190-63463209 None:intergenic 40.0%
! TGCCACTTACTCATAAGGTA+TGG + chr4_4:63463215-63463234 Msa0694170:intron 40.0%
! TGTGGTTGATGTGGTATACA+AGG + chr4_4:63463426-63463445 Msa0694170:CDS 40.0%
! GTGGTTGATGTGGTATACAA+GGG + chr4_4:63463427-63463446 Msa0694170:CDS 40.0%
! TGATGGATGTTTCTGAACAG+TGG - chr4_4:63463600-63463619 None:intergenic 40.0%
GGTCAAAATTATGAGGAGCA+GGG - chr4_4:63463638-63463657 None:intergenic 40.0%
!! GGCATAAAAGTATTGGGCTT+TGG - chr4_4:63463800-63463819 None:intergenic 40.0%
! AATTTGGCTAGCTCATTTCC+TGG - chr4_4:63463848-63463867 None:intergenic 40.0%
! TCAAGATCAGAGTGCTCATT+TGG + chr4_4:63463975-63463994 Msa0694170:intron 40.0%
! AAGGTCTACCCACAAGATTT+TGG + chr4_4:63464081-63464100 Msa0694170:CDS 40.0%
AAATGAGATCAATGTTGGGG+TGG - chr4_4:63464179-63464198 None:intergenic 40.0%
GCCACCCTTTACAATAGAAT+AGG - chr4_4:63464296-63464315 None:intergenic 40.0%
TGGATGATATGGTTCAAGGC+AGG - chr4_4:63461441-63461460 None:intergenic 45.0%
GGAGAGATGAGAGAAAGATG+AGG - chr4_4:63461552-63461571 None:intergenic 45.0%
! ACCTGGAGGAAGTTTAGGTT+TGG - chr4_4:63461620-63461639 None:intergenic 45.0%
AACACAAATCTTGCAGCCTC+AGG - chr4_4:63461893-63461912 None:intergenic 45.0%
TGAGGCTGCAAGATTTGTGT+TGG + chr4_4:63461892-63461911 Msa0694170:CDS 45.0%
GGCAGTTCTCTTTCAATGTC+GGG + chr4_4:63462484-63462503 Msa0694170:intron 45.0%
CCAAGTTACCAAAGACAGAG+AGG - chr4_4:63462512-63462531 None:intergenic 45.0%
! CCTCTCTGTCTTTGGTAACT+TGG + chr4_4:63462509-63462528 Msa0694170:CDS 45.0%
!! GCTTTGGAGTATGATGTTCC+GGG - chr4_4:63462612-63462631 None:intergenic 45.0%
GGAGCAGAGATTGAATGAGA+AGG + chr4_4:63462833-63462852 Msa0694170:CDS 45.0%
ACTGAGGGCCAATAAGGAAT+AGG - chr4_4:63463064-63463083 None:intergenic 45.0%
TGGAATCTTCCCTCCATCAT+TGG - chr4_4:63463170-63463189 None:intergenic 45.0%
GAGGGAAGATTCCATTGACA+TGG + chr4_4:63463176-63463195 Msa0694170:CDS 45.0%
GGGAAGATTCCATTGACATG+GGG + chr4_4:63463178-63463197 Msa0694170:CDS 45.0%
ATTCACGTTTAGGGAAGCTG+TGG + chr4_4:63463408-63463427 Msa0694170:CDS 45.0%
GGCATTACTTTCCAACCCTT+TGG - chr4_4:63463579-63463598 None:intergenic 45.0%
GGGTCAAAATTATGAGGAGC+AGG - chr4_4:63463639-63463658 None:intergenic 45.0%
ATATTTGTTTGGCAGGTGGG+AGG + chr4_4:63464007-63464026 Msa0694170:intron 45.0%
!! GAGGTAGTGGGATATCAAAG+TGG + chr4_4:63464026-63464045 Msa0694170:CDS 45.0%
!! GGATTGGGAATGGGCTATAT+TGG - chr4_4:63464055-63464074 None:intergenic 45.0%
!! AGCAACTTTGGGGTAGTTGC+AGG - chr4_4:63461492-63461511 None:intergenic 50.0%
GCCAAACCTAAACTTCCTCC+AGG + chr4_4:63461616-63461635 Msa0694170:CDS 50.0%
TTCCTCCAGGTTCATTGGGT+TGG + chr4_4:63461629-63461648 Msa0694170:CDS 50.0%
TAAGGCCAACCCAATGAACC+TGG - chr4_4:63461637-63461656 None:intergenic 50.0%
TACGAGTGTGGTAATCGCCT+TGG - chr4_4:63461997-63462016 None:intergenic 50.0%
GCGATTACCACACTCGTATC+CGG + chr4_4:63461999-63462018 Msa0694170:CDS 50.0%
! TAGGGAAGCTGTGGTTGATG+TGG + chr4_4:63463417-63463436 Msa0694170:CDS 50.0%
TGAGGAGCAGGGTAGAATTC+TGG - chr4_4:63463627-63463646 None:intergenic 50.0%
GAGTGCACTCCATTGCCAAA+TGG - chr4_4:63463821-63463840 None:intergenic 50.0%
AATGGAGTGCACTCATGTCC+AGG + chr4_4:63463827-63463846 Msa0694170:CDS 50.0%
CTTGCTGAGGGATTGGGAAT+GGG - chr4_4:63464064-63464083 None:intergenic 50.0%
GTAGACCTTGCTGAGGGATT+GGG - chr4_4:63464070-63464089 None:intergenic 50.0%
TTGTGGGTAGACCTTGCTGA+GGG - chr4_4:63464076-63464095 None:intergenic 50.0%
AGATCAATGTTGGGGTGGCA+AGG - chr4_4:63464174-63464193 None:intergenic 50.0%
CGAGTTTCCGGATACGAGTG+TGG - chr4_4:63462009-63462028 None:intergenic 55.0%
GTCGGGATCCTCTCTGTCTT+TGG + chr4_4:63462501-63462520 Msa0694170:CDS 55.0%
TTTGGCAGGTGGGAGGTAGT+GGG + chr4_4:63464014-63464033 Msa0694170:intron 55.0%
CCTTGCTGAGGGATTGGGAA+TGG - chr4_4:63464065-63464084 None:intergenic 55.0%
CCATTCCCAATCCCTCAGCA+AGG + chr4_4:63464062-63464081 Msa0694170:CDS 55.0%
GGTAGACCTTGCTGAGGGAT+TGG - chr4_4:63464071-63464090 None:intergenic 55.0%
CTTGTGGGTAGACCTTGCTG+AGG - chr4_4:63464077-63464096 None:intergenic 55.0%
GGGGTAGTTGCAGGCGTAGA+AGG - chr4_4:63461483-63461502 None:intergenic 60.0%
GGCCAACCCAATGAACCTGG+AGG - chr4_4:63461634-63461653 None:intergenic 60.0%
GTTTGGCAGGTGGGAGGTAG+TGG + chr4_4:63464013-63464032 Msa0694170:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 63461411 63464522 63461411 ID=Msa0694170;Name=Msa0694170
chr4_4 mRNA 63461411 63464522 63461411 ID=Msa0694170-mRNA-1;Parent=Msa0694170;Name=Msa0694170-mRNA-1;_AED=0.15;_eAED=0.15;_QI=109|1|1|1|0.87|0.77|9|407|471
chr4_4 exon 63461411 63461722 63461411 ID=Msa0694170-mRNA-1:exon:17854;Parent=Msa0694170-mRNA-1
chr4_4 exon 63461832 63462156 63461832 ID=Msa0694170-mRNA-1:exon:17855;Parent=Msa0694170-mRNA-1
chr4_4 exon 63462489 63462638 63462489 ID=Msa0694170-mRNA-1:exon:17856;Parent=Msa0694170-mRNA-1
chr4_4 exon 63462783 63463031 63462783 ID=Msa0694170-mRNA-1:exon:17857;Parent=Msa0694170-mRNA-1
chr4_4 exon 63463142 63463231 63463142 ID=Msa0694170-mRNA-1:exon:17858;Parent=Msa0694170-mRNA-1
chr4_4 exon 63463370 63463448 63463370 ID=Msa0694170-mRNA-1:exon:17859;Parent=Msa0694170-mRNA-1
chr4_4 exon 63463565 63463671 63463565 ID=Msa0694170-mRNA-1:exon:17860;Parent=Msa0694170-mRNA-1
chr4_4 exon 63463791 63463909 63463791 ID=Msa0694170-mRNA-1:exon:17861;Parent=Msa0694170-mRNA-1
chr4_4 exon 63464022 63464522 63464022 ID=Msa0694170-mRNA-1:exon:17862;Parent=Msa0694170-mRNA-1
chr4_4 five_prime_UTR 63461411 63461519 63461411 ID=Msa0694170-mRNA-1:five_prime_utr;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63461520 63461722 63461520 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63461832 63462156 63461832 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63462489 63462638 63462489 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63462783 63463031 63462783 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63463142 63463231 63463142 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63463370 63463448 63463370 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63463565 63463671 63463565 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63463791 63463909 63463791 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 CDS 63464022 63464115 63464022 ID=Msa0694170-mRNA-1:cds;Parent=Msa0694170-mRNA-1
chr4_4 three_prime_UTR 63464116 63464522 63464116 ID=Msa0694170-mRNA-1:three_prime_utr;Parent=Msa0694170-mRNA-1
Gene Sequence

>Msa0694170

ATGTATATGGACATTATTATTATCCTCTTCCTCATCTTTCTCTCATCTCTCCTCTCATATCCATTCATAAAGAAATTCAATAAACACGAAACCATAGCCAAACCTAAACTTCCTCCAGGTTCATTGGGTTGGCCTTATATAGGAGAAACTTTTCAACTTTACTCTCAACACCCTAACATCTTCTTTGCTTCTAAACAAAAAAGATATGGAGAAATATTTAAGACACACATATTAGGATGTCCATGTGTGATGTTAACAAGTCCTGAGGCTGCAAGATTTGTGTTGGTGACTCATTCTCATTTGTTTAAGCCTACATATCCCAAAAGCAAAGAGAAGCTTATTGGTTCTTCTGCATTATTCTTTCACCAAGGCGATTACCACACTCGTATCCGGAAACTCGTACAAAACTCTCTTGCTCCTGAATCAATCAAGAAATTGATCCCTGATATTGAAAATGAAGTCATTTCCTCACTAGAATCCTGGGTTTTTATTGGACAAGTCATCAACGCTTTCCATGAAATGAAGAAGTTCTCTTTCAATGTCGGGATCCTCTCTGTCTTTGGTAACTTGGAAGCCAATTATAGAGAACAGCTTAAGGAGAATTACTGCATAGTAGAGAAAGGTTACAATTCTTTCCCAAATAAGATACCCGGAACATCATACTCCAAAGCTCTTTTGGCGAGGCGGCGAATTCAAGAGATTATAAGTGAGATAATTTGCAAGAGAAAGGAGCAGAGATTGAATGAGAAGGATCTATTAGGCCATTTGCTAAACTACAAGGATGAAAAAGGGAAAATGTTAACTGATAAGGAAGTTGCTGATAATGTCATTGGAGTACTATTTGCAGCTCAAGATACTACAGCTAGTGTTCTTACTTGGATTCTCAAGTATCTTCATGATGACCCGAAACTTCTTGAAGCCATAAAAGCTGAGCAAATGGCAGTATGTGATACCAATGATGGAGGGAAGATTCCATTGACATGGGGTCAGATAAAAAATATGCCACTTACTCATAAGGTAATATTGGAAAGCCTAAGGATGTCAAGCATCATATCATTCACGTTTAGGGAAGCTGTGGTTGATGTGGTATACAAGGGATATTTAATACCAAAGGGTTGGAAAGTAATGCCACTGTTCAGAAACATCCATCATAATCCAGAATTCTACCCTGCTCCTCATAATTTTGACCCATCAAGATTTGAGTTTGCTCCAAAGCCCAATACTTTTATGCCATTTGGCAATGGAGTGCACTCATGTCCAGGAAATGAGCTAGCCAAATTGAACATGTTGATTTTAATCCATCATCTAGTAACCAAATTTAGGTGGGAGGTAGTGGGATATCAAAGTGGAATCCAATATAGCCCATTCCCAATCCCTCAGCAAGGTCTACCCACAAGATTTTGGAGAATCAAATAG

Protein sequence

>Msa0694170

MYMDIIIILFLIFLSSLLSYPFIKKFNKHETIAKPKLPPGSLGWPYIGETFQLYSQHPNIFFASKQKRYGEIFKTHILGCPCVMLTSPEAARFVLVTHSHLFKPTYPKSKEKLIGSSALFFHQGDYHTRIRKLVQNSLAPESIKKLIPDIENEVISSLESWVFIGQVINAFHEMKKFSFNVGILSVFGNLEANYREQLKENYCIVEKGYNSFPNKIPGTSYSKALLARRRIQEIISEIICKRKEQRLNEKDLLGHLLNYKDEKGKMLTDKEVADNVIGVLFAAQDTTASVLTWILKYLHDDPKLLEAIKAEQMAVCDTNDGGKIPLTWGQIKNMPLTHKVILESLRMSSIISFTFREAVVDVVYKGYLIPKGWKVMPLFRNIHHNPEFYPAPHNFDPSRFEFAPKPNTFMPFGNGVHSCPGNELAKLNMLILIHHLVTKFRWEVVGYQSGIQYSPFPIPQQGLPTRFWRIK*