Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834450 | XP_003611408.1 | 98.343 | 543 | 9 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834450 | sp|O23553|BAM3_ARATH | 68.231 | 554 | 159 | 8 | 1 | 543 | 1 | 548 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834450 | G7JYN2 | 98.343 | 543 | 9 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1124 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0834450 | -0.812036 | 5.188940e-51 | -8.615850e-47 |
| Msa0003560 | Msa0834450 | 0.838819 | 2.292667e-57 | -8.615850e-47 |
| Msa0032610 | Msa0834450 | 0.806696 | 7.257034e-50 | -8.615850e-47 |
| Msa0086170 | Msa0834450 | -0.802712 | 4.926326e-49 | -8.615850e-47 |
| Msa0610770 | Msa0834450 | 0.832460 | 9.336296e-56 | -8.615850e-47 |
| Msa0614990 | Msa0834450 | 0.824430 | 8.107910e-54 | -8.615850e-47 |
| Msa0615270 | Msa0834450 | -0.802362 | 5.816128e-49 | -8.615850e-47 |
| Msa0622910 | Msa0834450 | -0.845687 | 3.476371e-59 | -8.615850e-47 |
| Msa0629440 | Msa0834450 | -0.808298 | 3.317812e-50 | -8.615850e-47 |
| Msa0644770 | Msa0834450 | -0.814782 | 1.292960e-51 | -8.615850e-47 |
| Msa0650620 | Msa0834450 | 0.814493 | 1.497988e-51 | -8.615850e-47 |
| Msa0650640 | Msa0834450 | 0.826748 | 2.288568e-54 | -8.615850e-47 |
| Msa0650650 | Msa0834450 | 0.808041 | 3.763742e-50 | -8.615850e-47 |
| Msa0650730 | Msa0834450 | 0.872910 | 2.212261e-67 | -8.615850e-47 |
| Msa0650740 | Msa0834450 | 0.813525 | 2.449276e-51 | -8.615850e-47 |
| Msa0651320 | Msa0834450 | 0.831045 | 2.084719e-55 | -8.615850e-47 |
| Msa0693490 | Msa0834450 | 0.820459 | 6.783686e-53 | -8.615850e-47 |
| Msa0709670 | Msa0834450 | 0.813722 | 2.216217e-51 | -8.615850e-47 |
| Msa0713210 | Msa0834450 | 0.886382 | 3.591165e-72 | -8.615850e-47 |
| Msa0713220 | Msa0834450 | 0.865922 | 4.152954e-65 | -8.615850e-47 |
| Msa0713230 | Msa0834450 | 0.916877 | 1.048769e-85 | -8.615850e-47 |
| Msa0754350 | Msa0834450 | 0.834804 | 2.424943e-56 | -8.615850e-47 |
| Msa0755080 | Msa0834450 | 0.980879 | 3.008244e-151 | -8.615850e-47 |
| Msa0755090 | Msa0834450 | 0.912760 | 1.346177e-83 | -8.615850e-47 |
| Msa0796950 | Msa0834450 | 0.901826 | 1.808883e-78 | -8.615850e-47 |
| Msa0797000 | Msa0834450 | 0.872695 | 2.609627e-67 | -8.615850e-47 |
| Msa0801360 | Msa0834450 | 0.804410 | 2.189897e-49 | -8.615850e-47 |
| Msa0834450 | Msa0834460 | 0.930700 | 1.118096e-93 | -8.615850e-47 |
| Msa0834450 | Msa0834600 | 0.859544 | 3.844382e-63 | -8.615850e-47 |
| Msa0834450 | Msa0839830 | 0.802717 | 4.913110e-49 | -8.615850e-47 |
| Msa0834450 | Msa0898860 | 0.806263 | 8.954409e-50 | -8.615850e-47 |
| Msa0834450 | Msa0928030 | 0.842930 | 1.913485e-58 | -8.615850e-47 |
| Msa0834450 | Msa0935850 | 0.801280 | 9.702220e-49 | -8.615850e-47 |
| Msa0834450 | Msa0964430 | 0.815669 | 8.212519e-52 | -8.615850e-47 |
| Msa0834450 | Msa0964580 | 0.843211 | 1.611077e-58 | -8.615850e-47 |
| Msa0834450 | Msa0982270 | 0.816487 | 5.392842e-52 | -8.615850e-47 |
| Msa0834450 | Msa0982590 | 0.817814 | 2.712844e-52 | -8.615850e-47 |
| Msa0834450 | Msa1012920 | 0.852526 | 4.357387e-61 | -8.615850e-47 |
| Msa0834450 | Msa1037020 | 0.829356 | 5.388454e-55 | -8.615850e-47 |
| Msa0834450 | Msa1075590 | 0.835843 | 1.325154e-56 | -8.615850e-47 |
| Msa0834450 | Msa1077670 | 0.807906 | 4.020393e-50 | -8.615850e-47 |
| Msa0834450 | Msa1079730 | -0.804005 | 2.657837e-49 | -8.615850e-47 |
| Msa0834450 | Msa1105270 | 0.807348 | 5.282866e-50 | -8.615850e-47 |
| Msa0834450 | Msa1137090 | 0.831659 | 1.472951e-55 | -8.615850e-47 |
| Msa0834450 | Msa1148750 | 0.807341 | 5.299324e-50 | -8.615850e-47 |
| Msa0834450 | Msa1162980 | 0.846746 | 1.789166e-59 | -8.615850e-47 |
| Msa0834450 | Msa1164530 | 0.836077 | 1.156033e-56 | -8.615850e-47 |
| Msa0834450 | Msa1168040 | -0.826291 | 2.940513e-54 | -8.615850e-47 |
| Msa0834450 | Msa1172360 | 0.807923 | 3.987470e-50 | -8.615850e-47 |
| Msa0834450 | Msa1174870 | 0.862902 | 3.646801e-64 | -8.615850e-47 |
| Msa0834450 | Msa1176070 | 0.800518 | 1.388280e-48 | -8.615850e-47 |
| Msa0834450 | Msa1182640 | 0.817256 | 3.624513e-52 | -8.615850e-47 |
| Msa0834450 | Msa1207460 | -0.833670 | 4.666105e-56 | -8.615850e-47 |
| Msa0834450 | Msa1234690 | 0.845368 | 4.242304e-59 | -8.615850e-47 |
| Msa0834450 | Msa1234730 | 0.858121 | 1.023435e-62 | -8.615850e-47 |
| Msa0834450 | Msa1241820 | 0.816328 | 5.851207e-52 | -8.615850e-47 |
| Msa0834450 | Msa1257640 | -0.807285 | 5.445567e-50 | -8.615850e-47 |
| Msa0834450 | Msa1282920 | 0.809405 | 1.922929e-50 | -8.615850e-47 |
| Msa0834450 | Msa1301650 | 0.811146 | 8.102541e-51 | -8.615850e-47 |
| Msa0834450 | Msa1307740 | 0.823175 | 1.595299e-53 | -8.615850e-47 |
| Msa0834450 | Msa1315110 | 0.859587 | 3.731574e-63 | -8.615850e-47 |
| Msa0834450 | Msa1350690 | 0.845563 | 3.757056e-59 | -8.615850e-47 |
| Msa0834450 | Msa1353670 | 0.875005 | 4.332268e-68 | -8.615850e-47 |
| Msa0834450 | Msa1356180 | 0.889572 | 2.147979e-73 | -8.615850e-47 |
| Msa0834450 | Msa1360280 | 0.830289 | 3.193648e-55 | -8.615850e-47 |
| Msa0834450 | Msa1368980 | 0.804869 | 1.756195e-49 | -8.615850e-47 |
| Msa0834450 | Msa1383480 | 0.862261 | 5.744336e-64 | -8.615850e-47 |
| Msa0834450 | Msa1459760 | -0.818877 | 1.558170e-52 | -8.615850e-47 |
| Msa0147880 | Msa0834450 | -0.814767 | 1.303068e-51 | -8.615850e-47 |
| Msa0148120 | Msa0834450 | 0.802809 | 4.704534e-49 | -8.615850e-47 |
| Msa0197180 | Msa0834450 | 0.890208 | 1.212530e-73 | -8.615850e-47 |
| Msa0223100 | Msa0834450 | 0.828913 | 6.902856e-55 | -8.615850e-47 |
| Msa0223290 | Msa0834450 | 0.831403 | 1.703011e-55 | -8.615850e-47 |
| Msa0223380 | Msa0834450 | 0.837144 | 6.181536e-57 | -8.615850e-47 |
| Msa0368780 | Msa0834450 | 0.802571 | 5.268016e-49 | -8.615850e-47 |
| Msa0370870 | Msa0834450 | 0.802306 | 5.972529e-49 | -8.615850e-47 |
| Msa0376340 | Msa0834450 | 0.869863 | 2.250897e-66 | -8.615850e-47 |
| Msa0377010 | Msa0834450 | 0.801711 | 7.916017e-49 | -8.615850e-47 |
| Msa0379380 | Msa0834450 | 0.820093 | 8.226859e-53 | -8.615850e-47 |
| Msa0379540 | Msa0834450 | 0.801894 | 7.259478e-49 | -8.615850e-47 |
| Msa0381410 | Msa0834450 | 0.849482 | 3.142809e-60 | -8.615850e-47 |
| Msa0389810 | Msa0834450 | 0.817442 | 3.291210e-52 | -8.615850e-47 |
| Msa0404090 | Msa0834450 | 0.802358 | 5.826758e-49 | -8.615850e-47 |
| Msa0404220 | Msa0834450 | 0.803493 | 3.396217e-49 | -8.615850e-47 |
| Msa0404700 | Msa0834450 | 0.816068 | 6.691411e-52 | -8.615850e-47 |
| Msa0416320 | Msa0834450 | 0.861785 | 8.035968e-64 | -8.615850e-47 |
| Msa0424780 | Msa0834450 | 0.839959 | 1.159988e-57 | -8.615850e-47 |
| Msa0435000 | Msa0834450 | 0.803086 | 4.123536e-49 | -8.615850e-47 |
| Msa0453280 | Msa0834450 | 0.826442 | 2.706304e-54 | -8.615850e-47 |
| Msa0462540 | Msa0834450 | 0.809183 | 2.146326e-50 | -8.615850e-47 |
| Msa0468130 | Msa0834450 | 0.830412 | 2.980709e-55 | -8.615850e-47 |
| Msa0475240 | Msa0834450 | 0.844991 | 5.363091e-59 | -8.615850e-47 |
| Msa0479090 | Msa0834450 | 0.806735 | 7.121404e-50 | -8.615850e-47 |
| Msa0238940 | Msa0834450 | 0.872114 | 4.077281e-67 | -8.615850e-47 |
| Msa0266210 | Msa0834450 | 0.841175 | 5.570968e-58 | -8.615850e-47 |
| Msa0287670 | Msa0834450 | 0.846565 | 2.005175e-59 | -8.615850e-47 |
| Msa0302650 | Msa0834450 | 0.819781 | 9.696567e-53 | -8.615850e-47 |
| Msa0308770 | Msa0834450 | 0.883389 | 4.675649e-71 | -8.615850e-47 |
| Msa0316750 | Msa0834450 | 0.867378 | 1.430767e-65 | -8.615850e-47 |
| Msa0347610 | Msa0834450 | 0.802830 | 4.656974e-49 | -8.615850e-47 |
| Msa0361010 | Msa0834450 | 0.809546 | 1.793578e-50 | -8.615850e-47 |
| Msa0362060 | Msa0834450 | 0.872422 | 3.219824e-67 | -8.615850e-47 |
| Msa0363100 | Msa0834450 | 0.821252 | 4.457839e-53 | -8.615850e-47 |
| Msa0363170 | Msa0834450 | 0.820783 | 5.716316e-53 | -8.615850e-47 |
| Msa0491500 | Msa0834450 | 0.816933 | 4.283909e-52 | -8.615850e-47 |
| Msa0491520 | Msa0834450 | 0.801527 | 8.635582e-49 | -8.615850e-47 |
| Msa0504410 | Msa0834450 | 0.839975 | 1.148533e-57 | -8.615850e-47 |
| Msa0516160 | Msa0834450 | 0.868714 | 5.315969e-66 | -8.615850e-47 |
| Msa0530380 | Msa0834450 | 0.838080 | 3.555205e-57 | -8.615850e-47 |
| Msa0577320 | Msa0834450 | -0.845348 | 4.296841e-59 | -8.615850e-47 |
| Msa0579340 | Msa0834450 | 0.827726 | 1.334010e-54 | -8.615850e-47 |
| Msa0579350 | Msa0834450 | 0.873700 | 1.199780e-67 | -8.615850e-47 |
| Msa0579360 | Msa0834450 | 0.824780 | 6.705055e-54 | -8.615850e-47 |
| Msa0579370 | Msa0834450 | 0.817436 | 3.300930e-52 | -8.615850e-47 |
| Msa0581920 | Msa0834450 | 0.848717 | 5.130606e-60 | -8.615850e-47 |
| Msa0587290 | Msa0834450 | 0.800406 | 1.463304e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834450 | MtrunA17_Chr5g0399991 | 98.343 | 543 | 9 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1124 |
| Msa0834450 | MtrunA17_Chr5g0400001 | 91.927 | 545 | 40 | 2 | 1 | 543 | 1 | 543 | 0.0 | 1043 |
| Msa0834450 | MtrunA17_Chr4g0055281 | 73.801 | 542 | 124 | 5 | 1 | 535 | 1 | 531 | 0.0 | 832 |
| Msa0834450 | MtrunA17_Chr6g0481031 | 64.055 | 434 | 144 | 2 | 89 | 510 | 106 | 539 | 0.0 | 614 |
| Msa0834450 | MtrunA17_Chr4g0023601 | 50.115 | 435 | 200 | 4 | 87 | 507 | 11 | 442 | 1.47e-156 | 456 |
| Msa0834450 | MtrunA17_Chr2g0323051 | 50.229 | 436 | 200 | 4 | 86 | 507 | 83 | 515 | 1.02e-149 | 442 |
| Msa0834450 | MtrunA17_Chr8g0388651 | 46.039 | 467 | 231 | 7 | 90 | 543 | 80 | 538 | 3.37e-140 | 416 |
| Msa0834450 | MtrunA17_Chr7g0247631 | 46.591 | 440 | 218 | 6 | 89 | 515 | 265 | 700 | 2.66e-123 | 378 |
| Msa0834450 | MtrunA17_Chr2g0286431 | 38.581 | 451 | 267 | 4 | 63 | 508 | 57 | 502 | 1.54e-105 | 327 |
| Msa0834450 | MtrunA17_Chr5g0408851 | 38.013 | 463 | 269 | 8 | 59 | 510 | 189 | 644 | 5.69e-104 | 326 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834450 | AT4G17090.1 | 68.231 | 554 | 159 | 8 | 1 | 543 | 1 | 548 | 0.0 | 783 |
| Msa0834450 | AT3G23920.1 | 65.367 | 436 | 137 | 2 | 89 | 510 | 106 | 541 | 0.0 | 613 |
| Msa0834450 | AT4G15210.1 | 48.624 | 436 | 206 | 5 | 87 | 507 | 12 | 444 | 3.59e-149 | 437 |
| Msa0834450 | AT4G15210.2 | 52.051 | 390 | 182 | 4 | 87 | 474 | 12 | 398 | 9.95e-147 | 428 |
| Msa0834450 | AT2G32290.1 | 45.397 | 478 | 243 | 6 | 43 | 507 | 34 | 506 | 1.05e-141 | 421 |
| Msa0834450 | AT4G00490.1 | 49.074 | 432 | 203 | 6 | 89 | 507 | 95 | 522 | 5.94e-139 | 413 |
| Msa0834450 | AT4G15210.3 | 47.847 | 418 | 194 | 5 | 128 | 531 | 1 | 408 | 8.09e-139 | 409 |
| Msa0834450 | AT4G15210.4 | 47.847 | 418 | 194 | 5 | 128 | 531 | 1 | 408 | 8.09e-139 | 409 |
| Msa0834450 | AT5G55700.1 | 44.191 | 439 | 226 | 5 | 88 | 508 | 91 | 528 | 1.99e-130 | 391 |
| Msa0834450 | AT2G45880.1 | 46.154 | 429 | 214 | 6 | 89 | 504 | 248 | 672 | 6.10e-122 | 374 |
| Msa0834450 | AT5G45300.3 | 39.954 | 438 | 245 | 8 | 85 | 510 | 265 | 696 | 1.07e-99 | 317 |
| Msa0834450 | AT5G45300.2 | 39.954 | 438 | 245 | 8 | 85 | 510 | 249 | 680 | 1.11e-99 | 316 |
| Msa0834450 | AT5G45300.1 | 39.954 | 438 | 245 | 8 | 85 | 510 | 251 | 682 | 1.21e-99 | 316 |
| Msa0834450 | AT5G55700.2 | 45.260 | 327 | 166 | 3 | 195 | 508 | 39 | 365 | 3.42e-98 | 302 |
| Msa0834450 | AT5G18670.1 | 38.173 | 427 | 246 | 4 | 89 | 508 | 87 | 502 | 9.68e-90 | 286 |
Find 134 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTTACAGATTATT+TGG | 0.120196 | 5_4:-7473571 | Msa0834450:CDS |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5_4:+7472299 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5_4:+7473065 | None:intergenic |
| TAAAAGCATGTTGAATTATT+AGG | 0.193317 | 5_4:-7471739 | Msa0834450:three_prime_UTR |
| CTAGTTTACACAGACAAATT+AGG | 0.217572 | 5_4:-7473696 | Msa0834450:CDS |
| ATGGTCCAATGAAGTATAAT+TGG | 0.253077 | 5_4:-7474773 | Msa0834450:CDS |
| ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5_4:+7472338 | None:intergenic |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5_4:-7473050 | Msa0834450:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5_4:-7474805 | Msa0834450:CDS |
| TATATTGAATTTCACATGTA+TGG | 0.303816 | 5_4:-7472169 | Msa0834450:CDS |
| GGTTGCTTGAGGGTGATAAT+TGG | 0.305293 | 5_4:-7471948 | Msa0834450:CDS |
| GGTTCGGTACGTAGATAATT+TGG | 0.306701 | 5_4:-7471658 | Msa0834450:three_prime_UTR |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5_4:-7472426 | Msa0834450:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5_4:-7472465 | Msa0834450:CDS |
| TTATGTTGGACACATAATTA+AGG | 0.321924 | 5_4:-7471842 | Msa0834450:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.324398 | 5_4:+7472201 | None:intergenic |
| CATCCCAATGAGATGTATTC+AGG | 0.331249 | 5_4:+7473663 | None:intergenic |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5_4:+7473038 | None:intergenic |
| ATAGTTTCACTCCACTTGTT+TGG | 0.337144 | 5_4:+7472325 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5_4:-7473056 | Msa0834450:CDS |
| GCTTCCCAATTATACTTCAT+TGG | 0.343253 | 5_4:+7474768 | None:intergenic |
| GAAGCATCAGCAGGGGCAAT+TGG | 0.347112 | 5_4:-7472534 | Msa0834450:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5_4:-7472407 | Msa0834450:CDS |
| CTGTAAAGAAAGACAAGAAA+TGG | 0.352936 | 5_4:-7475001 | Msa0834450:CDS |
| CATGGGTGCTAGAAGAAATA+AGG | 0.365078 | 5_4:-7473731 | Msa0834450:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | 5_4:-7474859 | Msa0834450:CDS |
| GACAGATTTACAGATTATTT+GGG | 0.378560 | 5_4:-7473570 | Msa0834450:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5_4:+7474903 | None:intergenic |
| CTTATCTAAGAATAAATAAG+AGG | 0.380389 | 5_4:-7471969 | Msa0834450:CDS |
| TAGTTTACACAGACAAATTA+GGG | 0.386153 | 5_4:-7473695 | Msa0834450:CDS |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5_4:-7472027 | Msa0834450:CDS |
| TTGTCTGTGTAAACTAGCTC+AGG | 0.393606 | 5_4:+7473702 | None:intergenic |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5_4:-7472299 | Msa0834450:CDS |
| CTTGCTGAAGCTGATTCATA+TGG | 0.414041 | 5_4:-7471874 | Msa0834450:CDS |
| AAATCCTGAATACATCTCAT+TGG | 0.419556 | 5_4:-7473667 | Msa0834450:CDS |
| CAGGAAATTCAAGTGGGACT+AGG | 0.423979 | 5_4:-7473119 | Msa0834450:CDS |
| CCCTTCACGGCCAACACTGA+TGG | 0.424772 | 5_4:-7471680 | Msa0834450:three_prime_UTR |
| AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5_4:-7473622 | Msa0834450:CDS |
| CCCATCAGTGTTGGCCGTGA+AGG | 0.426556 | 5_4:+7471679 | None:intergenic |
| ACGAAAGCTTCTCATGTAAT+CGG | 0.429869 | 5_4:+7473593 | None:intergenic |
| GGAGAATGATGTTATAATAG+AGG | 0.433712 | 5_4:-7471821 | Msa0834450:CDS |
| CTTATTTCTTCTAGCACCCA+TGG | 0.439199 | 5_4:+7473732 | None:intergenic |
| GGGCAATTGGGAAGAAAGAA+TGG | 0.442156 | 5_4:-7472521 | Msa0834450:CDS |
| TGTTTCTTTCTGATTAATCA+AGG | 0.443999 | 5_4:+7475160 | None:intergenic |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5_4:+7473630 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5_4:+7473066 | None:intergenic |
| TTGAAGAGTGCTGGTGTTGA+AGG | 0.453491 | 5_4:-7474834 | Msa0834450:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5_4:-7472309 | Msa0834450:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5_4:-7471856 | Msa0834450:CDS |
| TTTCACATGTATGGAAATGA+AGG | 0.460068 | 5_4:-7472160 | Msa0834450:CDS |
| AAGCATCAGCAGGGGCAATT+GGG | 0.462242 | 5_4:-7472533 | Msa0834450:CDS |
| ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5_4:-7473749 | Msa0834450:intron |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5_4:+7473074 | None:intergenic |
| TGATAATTGGAGGAAATTTG+TGG | 0.467073 | 5_4:-7471935 | Msa0834450:CDS |
| TTCAGTTTGTGACCAAAAGA+TGG | 0.467366 | 5_4:+7475077 | None:intergenic |
| AATCCTGAATACATCTCATT+GGG | 0.468064 | 5_4:-7473666 | Msa0834450:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.470424 | 5_4:+7473021 | None:intergenic |
| TGGTCCAATGAAGTATAATT+GGG | 0.473267 | 5_4:-7474772 | Msa0834450:CDS |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5_4:-7474811 | Msa0834450:CDS |
| GAACACATATATCATGTTGA+TGG | 0.479468 | 5_4:-7471779 | Msa0834450:three_prime_UTR |
| TCATCCTTGGAAGCATCAGC+AGG | 0.479509 | 5_4:-7472543 | Msa0834450:CDS |
| ATGGCAGGTGGTGAACTTGC+TGG | 0.480529 | 5_4:-7472066 | Msa0834450:CDS |
| TTGATGGCTTTGAAGAGTGC+TGG | 0.481934 | 5_4:-7474843 | Msa0834450:CDS |
| ACAGTATATGAGATCATCCT+TGG | 0.486046 | 5_4:-7472556 | Msa0834450:intron |
| ACTTGATTAACCAATCCTTC+TGG | 0.487449 | 5_4:+7472105 | None:intergenic |
| ATTGGTTAATCAAGTGAGAA+TGG | 0.490106 | 5_4:-7472097 | Msa0834450:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5_4:-7473067 | Msa0834450:CDS |
| CCATCAGTGTTGGCCGTGAA+GGG | 0.496816 | 5_4:+7471680 | None:intergenic |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5_4:-7472115 | Msa0834450:CDS |
| TAGCATTCCTCTACCTCCAT+GGG | 0.501230 | 5_4:-7473748 | Msa0834450:CDS |
| TGCTTGAGGGTGATAATTGG+AGG | 0.503043 | 5_4:-7471945 | Msa0834450:CDS |
| TCTAGCACCCATGGAGGTAG+AGG | 0.503923 | 5_4:+7473741 | None:intergenic |
| TGCCCCTGCTGATGCTTCCA+AGG | 0.505543 | 5_4:+7472539 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5_4:-7474903 | Msa0834450:CDS |
| ATAAATAAGAGGTTGCTTGA+GGG | 0.505894 | 5_4:-7471958 | Msa0834450:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5_4:-7474812 | Msa0834450:CDS |
| ACGGCCAACACTGATGGGTT+CGG | 0.509170 | 5_4:-7471674 | Msa0834450:three_prime_UTR |
| GAAATGTTGGTGACTCCTGC+AGG | 0.512870 | 5_4:-7474668 | Msa0834450:intron |
| TGTAAAGAAAGACAAGAAAT+GGG | 0.514719 | 5_4:-7475000 | Msa0834450:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5_4:-7474681 | Msa0834450:CDS |
| AATAAATAAGAGGTTGCTTG+AGG | 0.517623 | 5_4:-7471959 | Msa0834450:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5_4:-7474745 | Msa0834450:CDS |
| GGCAATTGGGAAGAAAGAAT+GGG | 0.521028 | 5_4:-7472520 | Msa0834450:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.525311 | 5_4:-7471910 | Msa0834450:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5_4:-7474810 | Msa0834450:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5_4:-7473639 | Msa0834450:CDS |
| CATGCAACTGAATTAACTGC+TGG | 0.531917 | 5_4:-7472258 | Msa0834450:CDS |
| AGTGAGAATGGCAACAAAGA+TGG | 0.533714 | 5_4:-7472085 | Msa0834450:CDS |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5_4:-7473074 | Msa0834450:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5_4:-7474904 | Msa0834450:CDS |
| TGTCTGATGGTGGTAAACTA+AGG | 0.542826 | 5_4:-7471897 | Msa0834450:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.543820 | 5_4:+7473609 | None:intergenic |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5_4:+7472394 | None:intergenic |
| AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5_4:-7472336 | Msa0834450:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5_4:-7472231 | Msa0834450:CDS |
| AACACATATATCATGTTGAT+GGG | 0.560154 | 5_4:-7471778 | Msa0834450:three_prime_UTR |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5_4:-7474815 | Msa0834450:CDS |
| GATGCTAATTGTTCACCAGA+AGG | 0.566913 | 5_4:-7472120 | Msa0834450:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.571037 | 5_4:-7471907 | Msa0834450:CDS |
| CCTTCACGGCCAACACTGAT+GGG | 0.571622 | 5_4:-7471679 | Msa0834450:three_prime_UTR |
| TGGTGGTGTCTCGAATGTAT+TGG | 0.573266 | 5_4:-7471638 | Msa0834450:three_prime_UTR |
| TTGCTGAAGCTGATTCATAT+GGG | 0.575219 | 5_4:-7471873 | Msa0834450:CDS |
| TGCTGGTGTTGAAGGAGTAA+TGG | 0.577099 | 5_4:-7474826 | Msa0834450:CDS |
| AGAATGGCAACAAAGATGGC+AGG | 0.578781 | 5_4:-7472081 | Msa0834450:CDS |
| CTGCTGGTTACTATAACACA+AGG | 0.578850 | 5_4:-7472242 | Msa0834450:CDS |
| CATCAGTGTTGGCCGTGAAG+GGG | 0.581635 | 5_4:+7471681 | None:intergenic |
| GCACAAATGCTAGCAAAGCA+TGG | 0.584330 | 5_4:-7472195 | Msa0834450:CDS |
| TCGGTACGTAGATAATTTGG+TGG | 0.585995 | 5_4:-7471655 | Msa0834450:three_prime_UTR |
| AAGAAAGAATGGGGAACAAG+TGG | 0.590370 | 5_4:-7472510 | Msa0834450:CDS |
| TGTCTGTGTAAACTAGCTCA+GGG | 0.595938 | 5_4:+7473703 | None:intergenic |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5_4:+7473095 | None:intergenic |
| AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5_4:-7473109 | Msa0834450:CDS |
| ACAAGTGGACCACATGACTC+AGG | 0.607814 | 5_4:-7472495 | Msa0834450:CDS |
| ACATTTGCAGGAAATTCAAG+TGG | 0.608489 | 5_4:-7473126 | Msa0834450:intron |
| CATCCTTGGAAGCATCAGCA+GGG | 0.618285 | 5_4:-7472542 | Msa0834450:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5_4:-7472381 | Msa0834450:CDS |
| TGGTGATTCGAATAGAGTAC+CGG | 0.636351 | 5_4:-7474940 | Msa0834450:CDS |
| CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5_4:-7473110 | Msa0834450:CDS |
| TTGTATTGACCTGAGTCATG+TGG | 0.648053 | 5_4:+7472486 | None:intergenic |
| GGTGAACAATTAGCATCACA+AGG | 0.655544 | 5_4:+7472126 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5_4:+7474921 | None:intergenic |
| ATCCTTGGAAGCATCAGCAG+GGG | 0.664828 | 5_4:-7472541 | Msa0834450:CDS |
| CATTTGCAGGAAATTCAAGT+GGG | 0.665537 | 5_4:-7473125 | Msa0834450:intron |
| CGTACCGAACCCATCAGTGT+TGG | 0.667280 | 5_4:+7471670 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5_4:-7474900 | Msa0834450:CDS |
| ATGGCAACAAAGATGGCAGG+TGG | 0.674756 | 5_4:-7472078 | Msa0834450:CDS |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5_4:-7472472 | Msa0834450:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5_4:-7473027 | Msa0834450:intron |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5_4:-7474913 | Msa0834450:CDS |
| AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5_4:-7473108 | Msa0834450:CDS |
| CTCTATTCGAATCACCATCG+TGG | 0.716638 | 5_4:+7474946 | None:intergenic |
| GCAATTGGGAAGAAAGAATG+GGG | 0.724973 | 5_4:-7472519 | Msa0834450:CDS |
| TCTGTCACTCATAACCACGA+TGG | 0.739469 | 5_4:-7474960 | Msa0834450:CDS |
| ATTTCTTCTAGCACCCATGG+AGG | 0.751020 | 5_4:+7473735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATAAAAAATTTGGTTT+TGG | - | chr5_4:7472512-7472531 | Msa0834450:CDS | 10.0% |
| !!! | AACCAAAAAAATATTTTTAT+AGG | - | chr5_4:7472739-7472758 | Msa0834450:intron | 10.0% |
| !!! | ACCAAAAAAATATTTTTATA+GGG | - | chr5_4:7472740-7472759 | Msa0834450:intron | 10.0% |
| !! | TTATTATCTATTACTATATT+AGG | + | chr5_4:7472815-7472834 | None:intergenic | 10.0% |
| !! | AATCCTAAATATAAATTATT+TGG | - | chr5_4:7473954-7473973 | Msa0834450:intron | 10.0% |
| !! | AGATATTATTACACTAAAAA+TGG | - | chr5_4:7471649-7471668 | Msa0834450:three_prime_UTR | 15.0% |
| !! | TAAAAATAAAATTCTAGTGT+AGG | + | chr5_4:7472389-7472408 | None:intergenic | 15.0% |
| !!! | TACACTAGAATTTTATTTTT+AGG | - | chr5_4:7472388-7472407 | Msa0834450:CDS | 15.0% |
| !!! | ACCAAAAAAATATTTTTACA+GGG | + | chr5_4:7472480-7472499 | None:intergenic | 15.0% |
| !!! | AACCAAAAAAATATTTTTAC+AGG | + | chr5_4:7472481-7472500 | None:intergenic | 15.0% |
| !! | AAATCATTTCATATTGAAAT+TGG | + | chr5_4:7472657-7472676 | None:intergenic | 15.0% |
| !!! | AAATATAGAATATTTGGTTT+TGG | + | chr5_4:7472708-7472727 | None:intergenic | 15.0% |
| !!! | TCCCTATAAAAATATTTTTT+TGG | + | chr5_4:7472744-7472763 | None:intergenic | 15.0% |
| !! | TTTAGTTACTTATATATATG+TGG | - | chr5_4:7472981-7473000 | Msa0834450:intron | 15.0% |
| !!! | AGTCTTAGATTTTTTATTTT+TGG | + | chr5_4:7473065-7473084 | None:intergenic | 15.0% |
| !!! | TAAAAAATCTAAGACTAATT+TGG | - | chr5_4:7473069-7473088 | Msa0834450:CDS | 15.0% |
| !!! | ACATTTGTTCAAAATTTTAA+CGG | - | chr5_4:7473411-7473430 | Msa0834450:intron | 15.0% |
| !!! | TTATTAAATTAACATCGATT+AGG | + | chr5_4:7473506-7473525 | None:intergenic | 15.0% |
| !! | TGTCCAAATAATTTATATTT+AGG | + | chr5_4:7473960-7473979 | None:intergenic | 15.0% |
| !!! | TTCAGAGATTTTTTTTTTTT+TGG | - | chr5_4:7474087-7474106 | Msa0834450:intron | 15.0% |
| !! | TTTAGGTAGTAATAATATAG+TGG | - | chr5_4:7472405-7472424 | Msa0834450:CDS | 20.0% |
| !!! | TCCCTGTAAAAATATTTTTT+TGG | - | chr5_4:7472476-7472495 | Msa0834450:CDS | 20.0% |
| !!! | CCAAATTTTTTATATTTGCA+GGG | + | chr5_4:7472509-7472528 | None:intergenic | 20.0% |
| !!! | ACCAAATTTTTTATATTTGC+AGG | + | chr5_4:7472510-7472529 | None:intergenic | 20.0% |
| !!! | CAATATGAATCAATTTTACA+AGG | + | chr5_4:7472559-7472578 | None:intergenic | 20.0% |
| !!! | CTTGTAAAATTGATTCATAT+TGG | - | chr5_4:7472557-7472576 | Msa0834450:intron | 20.0% |
| !!! | AAATTGATTCATATTGGATT+TGG | - | chr5_4:7472563-7472582 | Msa0834450:intron | 20.0% |
| !! | CAAATATTCTACATATTACA+AGG | + | chr5_4:7472590-7472609 | None:intergenic | 20.0% |
| !! | AGGACTAAAATGAATATTAT+AGG | - | chr5_4:7472629-7472648 | Msa0834450:intron | 20.0% |
| !! | GGACTAAAATGAATATTATA+GGG | - | chr5_4:7472630-7472649 | Msa0834450:intron | 20.0% |
| !!! | CAATATGAAATGATTTTACA+AGG | - | chr5_4:7472661-7472680 | Msa0834450:intron | 20.0% |
| !! | ATTAGGCTTAAATATGAAAA+TGG | + | chr5_4:7472798-7472817 | None:intergenic | 20.0% |
| !!! | TAGTTGAAATTTTGATCAAA+TGG | - | chr5_4:7472835-7472854 | Msa0834450:intron | 20.0% |
| !!! | TAAAATTTTGAACAAATGTG+TGG | + | chr5_4:7473410-7473429 | None:intergenic | 20.0% |
| !!! | CATTTGTTCAAAATTTTAAC+GGG | - | chr5_4:7473412-7473431 | Msa0834450:intron | 20.0% |
| !!! | ATTTGTTCAAAATTTTAACG+GGG | - | chr5_4:7473413-7473432 | Msa0834450:intron | 20.0% |
| !!! | TTAAGATATTTTGCAATCAA+AGG | + | chr5_4:7474056-7474075 | None:intergenic | 20.0% |
| !! | TATATTGAATTTCACATGTA+TGG | - | chr5_4:7474687-7474706 | Msa0834450:CDS | 20.0% |
| !! | CTTATCTAAGAATAAATAAG+AGG | - | chr5_4:7474887-7474906 | Msa0834450:CDS | 20.0% |
| !!! | TAAAAGCATGTTGAATTATT+AGG | - | chr5_4:7475117-7475136 | Msa0834450:CDS | 20.0% |
| ! | TGTTTCTTTCTGATTAATCA+AGG | + | chr5_4:7471699-7471718 | None:intergenic | 25.0% |
| !!! | CCAAAAGATGGTTTAATTTT+TGG | + | chr5_4:7471770-7471789 | None:intergenic | 25.0% |
| !! | CCAAAAATTAAACCATCTTT+TGG | - | chr5_4:7471767-7471786 | Msa0834450:three_prime_UTR | 25.0% |
| ! | TGTAAAGAAAGACAAGAAAT+GGG | - | chr5_4:7471856-7471875 | Msa0834450:CDS | 25.0% |
| ! | AAATATTCAACCACCAATTT+AGG | - | chr5_4:7472237-7472256 | Msa0834450:CDS | 25.0% |
| ! | GAATGTAACAACTATAAACT+TGG | + | chr5_4:7472272-7472291 | None:intergenic | 25.0% |
| ! | CCCTGCAAATATAAAAAATT+TGG | - | chr5_4:7472506-7472525 | Msa0834450:CDS | 25.0% |
| !!! | AAAAATTTGGTTTTGGTTCT+TGG | - | chr5_4:7472519-7472538 | Msa0834450:CDS | 25.0% |
| ! | AGGATTAAAACAAAATACCA+AGG | - | chr5_4:7472681-7472700 | Msa0834450:intron | 25.0% |
| ! | ACCAAATATTCTATATTTGC+AGG | - | chr5_4:7472710-7472729 | Msa0834450:intron | 25.0% |
| ! | CCAAATATTCTATATTTGCA+GGG | - | chr5_4:7472711-7472730 | Msa0834450:intron | 25.0% |
| ! | GTGGTGAATTTATATATATG+AGG | - | chr5_4:7473000-7473019 | Msa0834450:intron | 25.0% |
| ! | TAGTTTACACAGACAAATTA+GGG | - | chr5_4:7473161-7473180 | Msa0834450:intron | 25.0% |
| ! | TGACAGATTTACAGATTATT+TGG | - | chr5_4:7473285-7473304 | Msa0834450:intron | 25.0% |
| ! | GACAGATTTACAGATTATTT+GGG | - | chr5_4:7473286-7473305 | Msa0834450:intron | 25.0% |
| !! | TAAGTACTTCATCAATTTTG+TGG | - | chr5_4:7473323-7473342 | Msa0834450:intron | 25.0% |
| ! | ACCAAAGTTATAATGATACT+TGG | - | chr5_4:7473348-7473367 | Msa0834450:intron | 25.0% |
| !!! | TTTGTTCAAAATTTTAACGG+GGG | - | chr5_4:7473414-7473433 | Msa0834450:intron | 25.0% |
| !! | TTATCTAAGACATTACGTTA+AGG | + | chr5_4:7473480-7473499 | None:intergenic | 25.0% |
| ! | ACTAACTATCTTGCTTAATA+TGG | + | chr5_4:7473577-7473596 | None:intergenic | 25.0% |
| !! | GACATATTTTGTTACAACTA+AGG | - | chr5_4:7473911-7473930 | Msa0834450:intron | 25.0% |
| ! | TTATAGAGAAAATCTTTGTG+TGG | + | chr5_4:7474028-7474047 | None:intergenic | 25.0% |
| ! | TTATGTTGGACACATAATTA+AGG | - | chr5_4:7475014-7475033 | Msa0834450:CDS | 25.0% |
| ! | AACACATATATCATGTTGAT+GGG | - | chr5_4:7475078-7475097 | Msa0834450:CDS | 25.0% |
| ! | TTTTGGACAAGAAACTTTGT+TGG | + | chr5_4:7471753-7471772 | None:intergenic | 30.0% |
| CTGTAAAGAAAGACAAGAAA+TGG | - | chr5_4:7471855-7471874 | Msa0834450:CDS | 30.0% | |
| ATGGTCCAATGAAGTATAAT+TGG | - | chr5_4:7472083-7472102 | Msa0834450:CDS | 30.0% | |
| TGGTCCAATGAAGTATAATT+GGG | - | chr5_4:7472084-7472103 | Msa0834450:CDS | 30.0% | |
| ! | ATCTACATACAAAGGTATGT+AGG | - | chr5_4:7472357-7472376 | Msa0834450:CDS | 30.0% |
| CAAAATGTCAGATATTTGCA+GGG | + | chr5_4:7472449-7472468 | None:intergenic | 30.0% | |
| !! | GATTTTAATCCCTCAAAATG+AGG | - | chr5_4:7472609-7472628 | Msa0834450:intron | 30.0% |
| !! | CATTTTAGTCCTCATTTTGA+GGG | + | chr5_4:7472621-7472640 | None:intergenic | 30.0% |
| !! | TCATTTTAGTCCTCATTTTG+AGG | + | chr5_4:7472622-7472641 | None:intergenic | 30.0% |
| CCCTGCAAATATAGAATATT+TGG | + | chr5_4:7472714-7472733 | None:intergenic | 30.0% | |
| !! | GATCCAGAAATTTTGAAAAG+TGG | + | chr5_4:7473031-7473050 | None:intergenic | 30.0% |
| !!! | TTTATTTTTGGTCTCAGTGA+CGG | + | chr5_4:7473053-7473072 | None:intergenic | 30.0% |
| CTAGTTTACACAGACAAATT+AGG | - | chr5_4:7473160-7473179 | Msa0834450:intron | 30.0% | |
| AAATCCTGAATACATCTCAT+TGG | - | chr5_4:7473189-7473208 | Msa0834450:intron | 30.0% | |
| AATCCTGAATACATCTCATT+GGG | - | chr5_4:7473190-7473209 | Msa0834450:intron | 30.0% | |
| GCCAAGTATCATTATAACTT+TGG | + | chr5_4:7473352-7473371 | None:intergenic | 30.0% | |
| GCAAGATAGTTAGTTATAAG+AGG | - | chr5_4:7473583-7473602 | Msa0834450:CDS | 30.0% | |
| TTAAGACCAAATACATTTGC+AGG | - | chr5_4:7473718-7473737 | Msa0834450:CDS | 30.0% | |
| GAATTTCCTGCAAATGTATT+TGG | + | chr5_4:7473727-7473746 | None:intergenic | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5_4:7474384-7474403 | Msa0834450:intron | 30.0% | |
| !! | ACTGGATTTTTCAAAAGAGA+AGG | - | chr5_4:7474409-7474428 | Msa0834450:intron | 30.0% |
| ! | TTTTCAAAAGAGAAGGAACA+TGG | - | chr5_4:7474416-7474435 | Msa0834450:intron | 30.0% |
| !! | ACTTGTTTGGAATATGCTTT+TGG | + | chr5_4:7474521-7474540 | None:intergenic | 30.0% |
| ! | AAAAGCATATTCCAAACAAG+TGG | - | chr5_4:7474520-7474539 | Msa0834450:intron | 30.0% |
| TATAACACAAGGTTTCATGA+TGG | - | chr5_4:7474625-7474644 | Msa0834450:intron | 30.0% | |
| TTTCACATGTATGGAAATGA+AGG | - | chr5_4:7474696-7474715 | Msa0834450:CDS | 30.0% | |
| ATTGGTTAATCAAGTGAGAA+TGG | - | chr5_4:7474759-7474778 | Msa0834450:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5_4:7474829-7474848 | Msa0834450:CDS | 30.0% | |
| AATAAATAAGAGGTTGCTTG+AGG | - | chr5_4:7474897-7474916 | Msa0834450:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+GGG | - | chr5_4:7474898-7474917 | Msa0834450:CDS | 30.0% | |
| TGATAATTGGAGGAAATTTG+TGG | - | chr5_4:7474921-7474940 | Msa0834450:CDS | 30.0% | |
| GGAGAATGATGTTATAATAG+AGG | - | chr5_4:7475035-7475054 | Msa0834450:CDS | 30.0% | |
| GAACACATATATCATGTTGA+TGG | - | chr5_4:7475077-7475096 | Msa0834450:CDS | 30.0% | |
| TTCAGTTTGTGACCAAAAGA+TGG | + | chr5_4:7471782-7471801 | None:intergenic | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5_4:7471997-7472016 | Msa0834450:CDS | 35.0% |
| GCTTCCCAATTATACTTCAT+TGG | + | chr5_4:7472091-7472110 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | chr5_4:7472124-7472143 | Msa0834450:CDS | 35.0% | |
| ! | GTCATGTCTTTTCATCAATG+TGG | - | chr5_4:7472163-7472182 | Msa0834450:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5_4:7472166-7472185 | Msa0834450:CDS | 35.0% |
| TTGGCAAATAGAGCCTAAAT+TGG | + | chr5_4:7472253-7472272 | None:intergenic | 35.0% | |
| CCAAAATGTCAGATATTTGC+AGG | + | chr5_4:7472450-7472469 | None:intergenic | 35.0% | |
| ! | CCTGCAAATATCTGACATTT+TGG | - | chr5_4:7472447-7472466 | Msa0834450:CDS | 35.0% |
| !!! | GAATATTTGGTTTTGGACCT+TGG | + | chr5_4:7472701-7472720 | None:intergenic | 35.0% |
| AAACCAAAACGCCAGATATT+TGG | - | chr5_4:7472767-7472786 | Msa0834450:intron | 35.0% | |
| ! | AAAGTTGTGTTGTTGTGTCA+AGG | + | chr5_4:7472911-7472930 | None:intergenic | 35.0% |
| !! | CCAGAAATTTTGAAAAGTGG+AGG | + | chr5_4:7473028-7473047 | None:intergenic | 35.0% |
| !! | CCTCCACTTTTCAAAATTTC+TGG | - | chr5_4:7473025-7473044 | Msa0834450:intron | 35.0% |
| ACGAAAGCTTCTCATGTAAT+CGG | + | chr5_4:7473266-7473285 | None:intergenic | 35.0% | |
| ACATTTGCAGGAAATTCAAG+TGG | - | chr5_4:7473730-7473749 | Msa0834450:CDS | 35.0% | |
| CATTTGCAGGAAATTCAAGT+GGG | - | chr5_4:7473731-7473750 | Msa0834450:CDS | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | chr5_4:7473829-7473848 | Msa0834450:intron | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | chr5_4:7473838-7473857 | None:intergenic | 35.0% | |
| TCCATTTGAGCACAACAATT+AGG | + | chr5_4:7474005-7474024 | None:intergenic | 35.0% | |
| ACAGTATATGAGATCATCCT+TGG | - | chr5_4:7474300-7474319 | Msa0834450:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5_4:7474391-7474410 | Msa0834450:intron | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5_4:7474403-7474422 | None:intergenic | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5_4:7474449-7474468 | Msa0834450:intron | 35.0% | |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5_4:7474475-7474494 | Msa0834450:intron | 35.0% |
| !! | ATATGCTTTTGGCTGATACA+AGG | + | chr5_4:7474510-7474529 | None:intergenic | 35.0% |
| ATAGTTTCACTCCACTTGTT+TGG | + | chr5_4:7474534-7474553 | None:intergenic | 35.0% | |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5_4:7474547-7474566 | Msa0834450:intron | 35.0% | |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5_4:7474560-7474579 | None:intergenic | 35.0% |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5_4:7474557-7474576 | Msa0834450:intron | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5_4:7474658-7474677 | None:intergenic | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | chr5_4:7474741-7474760 | Msa0834450:CDS | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | chr5_4:7474754-7474773 | None:intergenic | 35.0% | |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5_4:7474946-7474965 | Msa0834450:CDS | 35.0% |
| ! | TTGCTGAAGCTGATTCATAT+GGG | - | chr5_4:7474983-7475002 | Msa0834450:CDS | 35.0% |
| TATGGGACTGATCTTTATGT+TGG | - | chr5_4:7475000-7475019 | Msa0834450:CDS | 35.0% | |
| CTAAAAATGGCTCAAGCACT+TGG | - | chr5_4:7471662-7471681 | Msa0834450:three_prime_UTR | 40.0% | |
| TGGTGATTCGAATAGAGTAC+CGG | - | chr5_4:7471916-7471935 | Msa0834450:CDS | 40.0% | |
| AATGGCAACATCACAAACAC+CGG | + | chr5_4:7471938-7471957 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5_4:7471943-7471962 | Msa0834450:CDS | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5_4:7471953-7471972 | Msa0834450:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5_4:7472041-7472060 | Msa0834450:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5_4:7472045-7472064 | Msa0834450:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5_4:7472064-7472083 | Msa0834450:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5_4:7472111-7472130 | Msa0834450:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5_4:7472175-7472194 | Msa0834450:CDS | 40.0% |
| !! | AGTGTTATTTGCATACCTGC+AGG | + | chr5_4:7472206-7472225 | None:intergenic | 40.0% |
| GCAAATAGAGCCTAAATTGG+TGG | + | chr5_4:7472250-7472269 | None:intergenic | 40.0% | |
| ! | ATAGTCTTGCAAGACCAAAC+AGG | - | chr5_4:7472329-7472348 | Msa0834450:CDS | 40.0% |
| ! | TAGTCTTGCAAGACCAAACA+GGG | - | chr5_4:7472330-7472349 | Msa0834450:CDS | 40.0% |
| CAAAACGCCAGATATTTGGA+GGG | - | chr5_4:7472771-7472790 | Msa0834450:intron | 40.0% | |
| AAATGGTCCCTCCAAATATC+TGG | + | chr5_4:7472781-7472800 | None:intergenic | 40.0% | |
| ! | AAGTGTTGTGTGGTTTGTGT+GGG | + | chr5_4:7472861-7472880 | None:intergenic | 40.0% |
| !! | AAAGTGTTGTGTGGTTTGTG+TGG | + | chr5_4:7472862-7472881 | None:intergenic | 40.0% |
| ! | ACCACACAACACTTTTCTCT+TGG | - | chr5_4:7472867-7472886 | Msa0834450:intron | 40.0% |
| CAAGGTGTGTGTATATGTGT+GGG | + | chr5_4:7472893-7472912 | None:intergenic | 40.0% | |
| TCAAGGTGTGTGTATATGTG+TGG | + | chr5_4:7472894-7472913 | None:intergenic | 40.0% | |
| AATCAGATGCGAGATTGCAT+GGG | - | chr5_4:7472937-7472956 | Msa0834450:intron | 40.0% | |
| ! | CTTATTTCTTCTAGCACCCA+TGG | + | chr5_4:7473127-7473146 | None:intergenic | 40.0% |
| CATGGGTGCTAGAAGAAATA+AGG | - | chr5_4:7473125-7473144 | Msa0834450:intron | 40.0% | |
| TGTCTGTGTAAACTAGCTCA+GGG | + | chr5_4:7473156-7473175 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACTAGCTC+AGG | + | chr5_4:7473157-7473176 | None:intergenic | 40.0% | |
| CATCCCAATGAGATGTATTC+AGG | + | chr5_4:7473196-7473215 | None:intergenic | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5_4:7473793-7473812 | None:intergenic | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5_4:7473794-7473813 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5_4:7473806-7473825 | Msa0834450:intron | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5_4:7473821-7473840 | None:intergenic | 40.0% | |
| GCCTAATTGTTGTGCTCAAA+TGG | - | chr5_4:7474001-7474020 | Msa0834450:intron | 40.0% | |
| GGCAATTGGGAAGAAAGAAT+GGG | - | chr5_4:7474336-7474355 | Msa0834450:intron | 40.0% | |
| GCAATTGGGAAGAAAGAATG+GGG | - | chr5_4:7474337-7474356 | Msa0834450:intron | 40.0% | |
| AAGAAAGAATGGGGAACAAG+TGG | - | chr5_4:7474346-7474365 | Msa0834450:intron | 40.0% | |
| ! | TTGTATTGACCTGAGTCATG+TGG | + | chr5_4:7474373-7474392 | None:intergenic | 40.0% |
| GGAACATGGAACACAGAATA+TGG | - | chr5_4:7474430-7474449 | Msa0834450:intron | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5_4:7474465-7474484 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+TGG | - | chr5_4:7474598-7474617 | Msa0834450:intron | 40.0% | |
| ! | CTGCTGGTTACTATAACACA+AGG | - | chr5_4:7474614-7474633 | Msa0834450:intron | 40.0% |
| GGTGAACAATTAGCATCACA+AGG | + | chr5_4:7474733-7474752 | None:intergenic | 40.0% | |
| GATGCTAATTGTTCACCAGA+AGG | - | chr5_4:7474736-7474755 | Msa0834450:CDS | 40.0% | |
| AGTGAGAATGGCAACAAAGA+TGG | - | chr5_4:7474771-7474790 | Msa0834450:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCTACAAG+TGG | - | chr5_4:7474850-7474869 | Msa0834450:CDS | 40.0% |
| !! | TGTCTGATGGTGGTAAACTA+AGG | - | chr5_4:7474959-7474978 | Msa0834450:CDS | 40.0% |
| ! | CTTGCTGAAGCTGATTCATA+TGG | - | chr5_4:7474982-7475001 | Msa0834450:CDS | 40.0% |
| !! | TTTTTCAATGCACCCCTTCA+CGG | - | chr5_4:7475163-7475182 | Msa0834450:CDS | 40.0% |
| ! | GGTTCGGTACGTAGATAATT+TGG | - | chr5_4:7475198-7475217 | Msa0834450:exon | 40.0% |
| TCGGTACGTAGATAATTTGG+TGG | - | chr5_4:7475201-7475220 | Msa0834450:exon | 40.0% | |
| TCTGTCACTCATAACCACGA+TGG | - | chr5_4:7471896-7471915 | Msa0834450:CDS | 45.0% | |
| CTCTATTCGAATCACCATCG+TGG | + | chr5_4:7471913-7471932 | None:intergenic | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5_4:7471952-7471971 | Msa0834450:CDS | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5_4:7471956-7471975 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5_4:7471956-7471975 | Msa0834450:CDS | 45.0% | |
| !! | TTGATGGCTTTGAAGAGTGC+TGG | - | chr5_4:7472013-7472032 | Msa0834450:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGTGTTGA+AGG | - | chr5_4:7472022-7472041 | Msa0834450:CDS | 45.0% |
| ! | TGCTGGTGTTGAAGGAGTAA+TGG | - | chr5_4:7472030-7472049 | Msa0834450:CDS | 45.0% |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5_4:7472044-7472063 | Msa0834450:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5_4:7472046-7472065 | Msa0834450:CDS | 45.0% |
| TATGTAGATCCGTCCCTGTT+TGG | + | chr5_4:7472346-7472365 | None:intergenic | 45.0% | |
| AGGGACGGATCTACATACAA+AGG | - | chr5_4:7472349-7472368 | Msa0834450:CDS | 45.0% | |
| ! | CCTCCAAATATCTGGCGTTT+TGG | + | chr5_4:7472773-7472792 | None:intergenic | 45.0% |
| CCAAAACGCCAGATATTTGG+AGG | - | chr5_4:7472770-7472789 | Msa0834450:intron | 45.0% | |
| !! | GCCAAGAGAAAAGTGTTGTG+TGG | + | chr5_4:7472871-7472890 | None:intergenic | 45.0% |
| GAATCAGATGCGAGATTGCA+TGG | - | chr5_4:7472936-7472955 | Msa0834450:intron | 45.0% | |
| GAGATTGCATGGGAGATGAA+TGG | - | chr5_4:7472947-7472966 | Msa0834450:intron | 45.0% | |
| ATAGCATTCCTCTACCTCCA+TGG | - | chr5_4:7473107-7473126 | Msa0834450:CDS | 45.0% | |
| TAGCATTCCTCTACCTCCAT+GGG | - | chr5_4:7473108-7473127 | Msa0834450:CDS | 45.0% | |
| ATTTCTTCTAGCACCCATGG+AGG | + | chr5_4:7473124-7473143 | None:intergenic | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | + | chr5_4:7473250-7473269 | None:intergenic | 45.0% | |
| TAACGGGGGCTATATATCGT+CGG | - | chr5_4:7473428-7473447 | Msa0834450:intron | 45.0% | |
| CAGGAAATTCAAGTGGGACT+AGG | - | chr5_4:7473737-7473756 | Msa0834450:CDS | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5_4:7473785-7473804 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5_4:7473782-7473801 | Msa0834450:intron | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5_4:7473789-7473808 | Msa0834450:intron | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5_4:7473800-7473819 | Msa0834450:intron | 45.0% | |
| GGGCAATTGGGAAGAAAGAA+TGG | - | chr5_4:7474335-7474354 | Msa0834450:intron | 45.0% | |
| GCACAAATGCTAGCAAAGCA+TGG | - | chr5_4:7474661-7474680 | Msa0834450:intron | 45.0% | |
| AGAATGGCAACAAAGATGGC+AGG | - | chr5_4:7474775-7474794 | Msa0834450:CDS | 45.0% | |
| GGTTGCTTGAGGGTGATAAT+TGG | - | chr5_4:7474908-7474927 | Msa0834450:CDS | 45.0% | |
| TGCTTGAGGGTGATAATTGG+AGG | - | chr5_4:7474911-7474930 | Msa0834450:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5_4:7474949-7474968 | Msa0834450:CDS | 45.0% | |
| ! | TGGTGGTGTCTCGAATGTAT+TGG | - | chr5_4:7475218-7475237 | Msa0834450:five_prime_UTR | 45.0% |
| !! | GAAATGTTGGTGACTCCTGC+AGG | - | chr5_4:7472188-7472207 | Msa0834450:CDS | 50.0% |
| CTTGCAAGACCAAACAGGGA+CGG | - | chr5_4:7472334-7472353 | Msa0834450:CDS | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+AGG | - | chr5_4:7473217-7473236 | Msa0834450:intron | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5_4:7473229-7473248 | None:intergenic | 50.0% | |
| AGCAGGAAGAACTCCACTTC+AGG | - | chr5_4:7473234-7473253 | Msa0834450:intron | 50.0% | |
| AAGTGGGACTAGGTCCATGT+GGG | - | chr5_4:7473747-7473766 | Msa0834450:CDS | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5_4:7473764-7473783 | None:intergenic | 50.0% | |
| !! | TCATCCTTGGAAGCATCAGC+AGG | - | chr5_4:7474313-7474332 | Msa0834450:intron | 50.0% |
| !! | CATCCTTGGAAGCATCAGCA+GGG | - | chr5_4:7474314-7474333 | Msa0834450:intron | 50.0% |
| !! | ATCCTTGGAAGCATCAGCAG+GGG | - | chr5_4:7474315-7474334 | Msa0834450:intron | 50.0% |
| AAGCATCAGCAGGGGCAATT+GGG | - | chr5_4:7474323-7474342 | Msa0834450:intron | 50.0% | |
| ACAAGTGGACCACATGACTC+AGG | - | chr5_4:7474361-7474380 | Msa0834450:intron | 50.0% | |
| ATGGCAACAAAGATGGCAGG+TGG | - | chr5_4:7474778-7474797 | Msa0834450:CDS | 50.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5_4:7472051-7472070 | Msa0834450:CDS | 55.0% |
| TCTAGCACCCATGGAGGTAG+AGG | + | chr5_4:7473118-7473137 | None:intergenic | 55.0% | |
| CAAGTGGGACTAGGTCCATG+TGG | - | chr5_4:7473746-7473765 | Msa0834450:CDS | 55.0% | |
| AGTGGGACTAGGTCCATGTG+GGG | - | chr5_4:7473748-7473767 | Msa0834450:CDS | 55.0% | |
| ! | GAAGCATCAGCAGGGGCAAT+TGG | - | chr5_4:7474322-7474341 | Msa0834450:intron | 55.0% |
| ATGGCAGGTGGTGAACTTGC+TGG | - | chr5_4:7474790-7474809 | Msa0834450:CDS | 55.0% | |
| !! | CATCAGTGTTGGCCGTGAAG+GGG | + | chr5_4:7475178-7475197 | None:intergenic | 55.0% |
| !! | CCATCAGTGTTGGCCGTGAA+GGG | + | chr5_4:7475179-7475198 | None:intergenic | 55.0% |
| CCTTCACGGCCAACACTGAT+GGG | - | chr5_4:7475177-7475196 | Msa0834450:CDS | 55.0% | |
| !! | ACGGCCAACACTGATGGGTT+CGG | - | chr5_4:7475182-7475201 | Msa0834450:CDS | 55.0% |
| CGTACCGAACCCATCAGTGT+TGG | + | chr5_4:7475189-7475208 | None:intergenic | 55.0% | |
| TGCCCCTGCTGATGCTTCCA+AGG | + | chr5_4:7474320-7474339 | None:intergenic | 60.0% | |
| CCCTTCACGGCCAACACTGA+TGG | - | chr5_4:7475176-7475195 | Msa0834450:CDS | 60.0% | |
| !! | CCCATCAGTGTTGGCCGTGA+AGG | + | chr5_4:7475180-7475199 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7471635 | 7475243 | 7471635 | ID=Msa0834450;Name=Msa0834450 |
| chr5_4 | mRNA | 7471635 | 7475243 | 7471635 | ID=Msa0834450-mRNA-1;Parent=Msa0834450;Name=Msa0834450-mRNA-1;_AED=0.29;_eAED=0.29;_QI=33|1|1|1|1|1|4|172|543 |
| chr5_4 | exon | 7471635 | 7472574 | 7471635 | ID=Msa0834450-mRNA-1:exon:3358;Parent=Msa0834450-mRNA-1 |
| chr5_4 | exon | 7473028 | 7473138 | 7473028 | ID=Msa0834450-mRNA-1:exon:3357;Parent=Msa0834450-mRNA-1 |
| chr5_4 | exon | 7473557 | 7473767 | 7473557 | ID=Msa0834450-mRNA-1:exon:3356;Parent=Msa0834450-mRNA-1 |
| chr5_4 | exon | 7474669 | 7475243 | 7474669 | ID=Msa0834450-mRNA-1:exon:3355;Parent=Msa0834450-mRNA-1 |
| chr5_4 | five_prime_UTR | 7475211 | 7475243 | 7475211 | ID=Msa0834450-mRNA-1:five_prime_utr;Parent=Msa0834450-mRNA-1 |
| chr5_4 | CDS | 7474669 | 7475210 | 7474669 | ID=Msa0834450-mRNA-1:cds;Parent=Msa0834450-mRNA-1 |
| chr5_4 | CDS | 7473557 | 7473767 | 7473557 | ID=Msa0834450-mRNA-1:cds;Parent=Msa0834450-mRNA-1 |
| chr5_4 | CDS | 7473028 | 7473138 | 7473028 | ID=Msa0834450-mRNA-1:cds;Parent=Msa0834450-mRNA-1 |
| chr5_4 | CDS | 7471807 | 7472574 | 7471807 | ID=Msa0834450-mRNA-1:cds;Parent=Msa0834450-mRNA-1 |
| chr5_4 | three_prime_UTR | 7471635 | 7471806 | 7471635 | ID=Msa0834450-mRNA-1:three_prime_utr;Parent=Msa0834450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
