Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755080 | sp|O23553|BAM3_ARATH | 68.231 | 554 | 159 | 8 | 1 | 543 | 1 | 548 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755080 | G7JYN2 | 98.158 | 543 | 10 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1123 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0755080 | -0.802901 | 4.503037e-49 | -8.615850e-47 |
| Msa0003560 | Msa0755080 | 0.830515 | 2.812350e-55 | -8.615850e-47 |
| Msa0610770 | Msa0755080 | 0.830165 | 3.423471e-55 | -8.615850e-47 |
| Msa0614990 | Msa0755080 | 0.828063 | 1.106975e-54 | -8.615850e-47 |
| Msa0615270 | Msa0755080 | -0.801680 | 8.030720e-49 | -8.615850e-47 |
| Msa0622910 | Msa0755080 | -0.845843 | 3.153107e-59 | -8.615850e-47 |
| Msa0629440 | Msa0755080 | -0.819632 | 1.048927e-52 | -8.615850e-47 |
| Msa0644770 | Msa0755080 | -0.813695 | 2.247561e-51 | -8.615850e-47 |
| Msa0650620 | Msa0755080 | 0.815225 | 1.031197e-51 | -8.615850e-47 |
| Msa0650640 | Msa0755080 | 0.831283 | 1.822156e-55 | -8.615850e-47 |
| Msa0650650 | Msa0755080 | 0.804771 | 1.841089e-49 | -8.615850e-47 |
| Msa0650730 | Msa0755080 | 0.878384 | 2.933107e-69 | -8.615850e-47 |
| Msa0650740 | Msa0755080 | 0.811669 | 6.235135e-51 | -8.615850e-47 |
| Msa0651320 | Msa0755080 | 0.832045 | 1.182865e-55 | -8.615850e-47 |
| Msa0667070 | Msa0755080 | -0.805629 | 1.217398e-49 | -8.615850e-47 |
| Msa0693490 | Msa0755080 | 0.815377 | 9.537641e-52 | -8.615850e-47 |
| Msa0709670 | Msa0755080 | 0.820588 | 6.334623e-53 | -8.615850e-47 |
| Msa0713210 | Msa0755080 | 0.874804 | 5.069611e-68 | -8.615850e-47 |
| Msa0713220 | Msa0755080 | 0.858995 | 5.617783e-63 | -8.615850e-47 |
| Msa0713230 | Msa0755080 | 0.911195 | 8.004531e-83 | -8.615850e-47 |
| Msa0754350 | Msa0755080 | 0.833605 | 4.844157e-56 | -8.615850e-47 |
| Msa0755080 | Msa0755090 | 0.906677 | 1.149099e-80 | -8.615850e-47 |
| Msa0755080 | Msa0796950 | 0.895285 | 1.108484e-75 | -8.615850e-47 |
| Msa0755080 | Msa0797000 | 0.866145 | 3.531564e-65 | -8.615850e-47 |
| Msa0755080 | Msa0801360 | 0.800790 | 1.221907e-48 | -8.615850e-47 |
| Msa0755080 | Msa0834450 | 0.980879 | 3.008244e-151 | -8.615850e-47 |
| Msa0755080 | Msa0834460 | 0.915177 | 8.020331e-85 | -8.615850e-47 |
| Msa0755080 | Msa0834600 | 0.834359 | 3.136431e-56 | -8.615850e-47 |
| Msa0755080 | Msa0898860 | 0.807550 | 4.784684e-50 | -8.615850e-47 |
| Msa0755080 | Msa0928030 | 0.840409 | 8.848391e-58 | -8.615850e-47 |
| Msa0755080 | Msa0941540 | 0.808147 | 3.572508e-50 | -8.615850e-47 |
| Msa0755080 | Msa0964430 | 0.816781 | 4.633424e-52 | -8.615850e-47 |
| Msa0755080 | Msa0964580 | 0.857148 | 1.988789e-62 | -8.615850e-47 |
| Msa0755080 | Msa0982270 | 0.807188 | 5.710961e-50 | -8.615850e-47 |
| Msa0755080 | Msa0982590 | 0.816800 | 4.588727e-52 | -8.615850e-47 |
| Msa0755080 | Msa1012920 | 0.859722 | 3.398113e-63 | -8.615850e-47 |
| Msa0755080 | Msa1037020 | 0.817402 | 3.359432e-52 | -8.615850e-47 |
| Msa0755080 | Msa1075590 | 0.824840 | 6.488962e-54 | -8.615850e-47 |
| Msa0755080 | Msa1077670 | 0.808879 | 2.492774e-50 | -8.615850e-47 |
| Msa0755080 | Msa1105270 | 0.806831 | 6.795153e-50 | -8.615850e-47 |
| Msa0755080 | Msa1137090 | 0.828540 | 8.493263e-55 | -8.615850e-47 |
| Msa0755080 | Msa1148750 | 0.801361 | 9.334885e-49 | -8.615850e-47 |
| Msa0755080 | Msa1162980 | 0.841019 | 6.122567e-58 | -8.615850e-47 |
| Msa0755080 | Msa1164530 | 0.825240 | 5.221750e-54 | -8.615850e-47 |
| Msa0755080 | Msa1168040 | -0.819137 | 1.359753e-52 | -8.615850e-47 |
| Msa0755080 | Msa1174870 | 0.863429 | 2.504870e-64 | -8.615850e-47 |
| Msa0755080 | Msa1182640 | 0.824743 | 6.841752e-54 | -8.615850e-47 |
| Msa0755080 | Msa1207460 | -0.829823 | 4.149884e-55 | -8.615850e-47 |
| Msa0755080 | Msa1234690 | 0.845242 | 4.588435e-59 | -8.615850e-47 |
| Msa0755080 | Msa1234730 | 0.858302 | 9.041080e-63 | -8.615850e-47 |
| Msa0755080 | Msa1241820 | 0.814392 | 1.577199e-51 | -8.615850e-47 |
| Msa0755080 | Msa1257640 | -0.804738 | 1.870608e-49 | -8.615850e-47 |
| Msa0755080 | Msa1282920 | 0.813435 | 2.564086e-51 | -8.615850e-47 |
| Msa0755080 | Msa1301650 | 0.806785 | 6.949458e-50 | -8.615850e-47 |
| Msa0755080 | Msa1307740 | 0.811772 | 5.922902e-51 | -8.615850e-47 |
| Msa0755080 | Msa1315110 | 0.859092 | 5.253246e-63 | -8.615850e-47 |
| Msa0755080 | Msa1350690 | 0.835020 | 2.138871e-56 | -8.615850e-47 |
| Msa0755080 | Msa1353670 | 0.875039 | 4.216591e-68 | -8.615850e-47 |
| Msa0755080 | Msa1356180 | 0.876463 | 1.368971e-68 | -8.615850e-47 |
| Msa0755080 | Msa1360280 | 0.824706 | 6.980461e-54 | -8.615850e-47 |
| Msa0755080 | Msa1383480 | 0.846855 | 1.670722e-59 | -8.615850e-47 |
| Msa0755080 | Msa1459760 | -0.808287 | 3.335680e-50 | -8.615850e-47 |
| Msa0147880 | Msa0755080 | -0.824770 | 6.743324e-54 | -8.615850e-47 |
| Msa0197180 | Msa0755080 | 0.908030 | 2.665899e-81 | -8.615850e-47 |
| Msa0223100 | Msa0755080 | 0.832058 | 1.174004e-55 | -8.615850e-47 |
| Msa0223290 | Msa0755080 | 0.830601 | 2.679599e-55 | -8.615850e-47 |
| Msa0223380 | Msa0755080 | 0.837032 | 6.603340e-57 | -8.615850e-47 |
| Msa0376340 | Msa0755080 | 0.871563 | 6.214791e-67 | -8.615850e-47 |
| Msa0377010 | Msa0755080 | 0.817983 | 2.484402e-52 | -8.615850e-47 |
| Msa0379380 | Msa0755080 | 0.812261 | 4.634228e-51 | -8.615850e-47 |
| Msa0381410 | Msa0755080 | 0.847805 | 9.166998e-60 | -8.615850e-47 |
| Msa0384540 | Msa0755080 | 0.800688 | 1.281703e-48 | -8.615850e-47 |
| Msa0389810 | Msa0755080 | 0.807603 | 4.663118e-50 | -8.615850e-47 |
| Msa0404700 | Msa0755080 | 0.816278 | 6.003783e-52 | -8.615850e-47 |
| Msa0416320 | Msa0755080 | 0.846145 | 2.610039e-59 | -8.615850e-47 |
| Msa0424780 | Msa0755080 | 0.840783 | 7.061745e-58 | -8.615850e-47 |
| Msa0435000 | Msa0755080 | 0.807269 | 5.488633e-50 | -8.615850e-47 |
| Msa0453280 | Msa0755080 | 0.832409 | 9.609698e-56 | -8.615850e-47 |
| Msa0462540 | Msa0755080 | 0.800845 | 1.190197e-48 | -8.615850e-47 |
| Msa0468130 | Msa0755080 | 0.822443 | 2.362628e-53 | -8.615850e-47 |
| Msa0475240 | Msa0755080 | 0.841859 | 3.680737e-58 | -8.615850e-47 |
| Msa0479090 | Msa0755080 | 0.806010 | 1.012281e-49 | -8.615850e-47 |
| Msa0238940 | Msa0755080 | 0.885669 | 6.662968e-72 | -8.615850e-47 |
| Msa0266210 | Msa0755080 | 0.834194 | 3.451366e-56 | -8.615850e-47 |
| Msa0287670 | Msa0755080 | 0.835941 | 1.251505e-56 | -8.615850e-47 |
| Msa0302650 | Msa0755080 | 0.818532 | 1.866251e-52 | -8.615850e-47 |
| Msa0308770 | Msa0755080 | 0.897886 | 9.098853e-77 | -8.615850e-47 |
| Msa0316750 | Msa0755080 | 0.880797 | 4.080860e-70 | -8.615850e-47 |
| Msa0362060 | Msa0755080 | 0.863394 | 2.569247e-64 | -8.615850e-47 |
| Msa0363100 | Msa0755080 | 0.815828 | 7.570478e-52 | -8.615850e-47 |
| Msa0363170 | Msa0755080 | 0.823306 | 1.487195e-53 | -8.615850e-47 |
| Msa0491500 | Msa0755080 | 0.806264 | 8.949265e-50 | -8.615850e-47 |
| Msa0501510 | Msa0755080 | 0.801617 | 8.274122e-49 | -8.615850e-47 |
| Msa0504410 | Msa0755080 | 0.830659 | 2.592700e-55 | -8.615850e-47 |
| Msa0516160 | Msa0755080 | 0.869879 | 2.223968e-66 | -8.615850e-47 |
| Msa0530380 | Msa0755080 | 0.838617 | 2.586187e-57 | -8.615850e-47 |
| Msa0577320 | Msa0755080 | -0.845716 | 3.413901e-59 | -8.615850e-47 |
| Msa0579340 | Msa0755080 | 0.824011 | 1.016652e-53 | -8.615850e-47 |
| Msa0579350 | Msa0755080 | 0.876554 | 1.273206e-68 | -8.615850e-47 |
| Msa0579360 | Msa0755080 | 0.828131 | 1.065914e-54 | -8.615850e-47 |
| Msa0579370 | Msa0755080 | 0.804702 | 1.902646e-49 | -8.615850e-47 |
| Msa0581920 | Msa0755080 | 0.850299 | 1.858163e-60 | -8.615850e-47 |
| Msa0587290 | Msa0755080 | 0.810903 | 9.145598e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755080 | MtrunA17_Chr5g0399991 | 98.158 | 543 | 10 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1123 |
| Msa0755080 | MtrunA17_Chr5g0400001 | 91.743 | 545 | 41 | 2 | 1 | 543 | 1 | 543 | 0.0 | 1042 |
| Msa0755080 | MtrunA17_Chr4g0055281 | 73.985 | 542 | 123 | 5 | 1 | 535 | 1 | 531 | 0.0 | 833 |
| Msa0755080 | MtrunA17_Chr6g0481031 | 64.286 | 434 | 143 | 2 | 89 | 510 | 106 | 539 | 0.0 | 616 |
| Msa0755080 | MtrunA17_Chr4g0023601 | 50.115 | 435 | 200 | 4 | 87 | 507 | 11 | 442 | 1.57e-156 | 456 |
| Msa0755080 | MtrunA17_Chr2g0323051 | 50.229 | 436 | 200 | 4 | 86 | 507 | 83 | 515 | 1.42e-149 | 441 |
| Msa0755080 | MtrunA17_Chr8g0388651 | 46.253 | 467 | 230 | 7 | 90 | 543 | 80 | 538 | 1.34e-140 | 417 |
| Msa0755080 | MtrunA17_Chr7g0247631 | 46.818 | 440 | 217 | 6 | 89 | 515 | 265 | 700 | 8.63e-124 | 379 |
| Msa0755080 | MtrunA17_Chr2g0286431 | 38.581 | 451 | 267 | 4 | 63 | 508 | 57 | 502 | 1.57e-105 | 327 |
| Msa0755080 | MtrunA17_Chr5g0408851 | 38.013 | 463 | 269 | 8 | 59 | 510 | 189 | 644 | 6.89e-104 | 326 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0755080 | AT4G17090.1 | 68.231 | 554 | 159 | 8 | 1 | 543 | 1 | 548 | 0.0 | 783 |
| Msa0755080 | AT3G23920.1 | 65.596 | 436 | 136 | 2 | 89 | 510 | 106 | 541 | 0.0 | 614 |
| Msa0755080 | AT4G15210.1 | 48.624 | 436 | 206 | 5 | 87 | 507 | 12 | 444 | 3.63e-149 | 437 |
| Msa0755080 | AT4G15210.2 | 52.051 | 390 | 182 | 4 | 87 | 474 | 12 | 398 | 8.93e-147 | 429 |
| Msa0755080 | AT2G32290.1 | 45.397 | 478 | 243 | 6 | 43 | 507 | 34 | 506 | 1.16e-141 | 421 |
| Msa0755080 | AT4G00490.1 | 49.306 | 432 | 202 | 6 | 89 | 507 | 95 | 522 | 2.24e-139 | 414 |
| Msa0755080 | AT4G15210.3 | 47.847 | 418 | 194 | 5 | 128 | 531 | 1 | 408 | 8.36e-139 | 409 |
| Msa0755080 | AT4G15210.4 | 47.847 | 418 | 194 | 5 | 128 | 531 | 1 | 408 | 8.36e-139 | 409 |
| Msa0755080 | AT5G55700.1 | 44.191 | 439 | 226 | 5 | 88 | 508 | 91 | 528 | 2.94e-130 | 390 |
| Msa0755080 | AT2G45880.1 | 46.154 | 429 | 214 | 6 | 89 | 504 | 248 | 672 | 7.39e-122 | 374 |
| Msa0755080 | AT5G45300.2 | 39.954 | 438 | 245 | 8 | 85 | 510 | 249 | 680 | 1.25e-99 | 316 |
| Msa0755080 | AT5G45300.3 | 39.954 | 438 | 245 | 8 | 85 | 510 | 265 | 696 | 1.26e-99 | 317 |
| Msa0755080 | AT5G45300.1 | 39.954 | 438 | 245 | 8 | 85 | 510 | 251 | 682 | 1.30e-99 | 316 |
| Msa0755080 | AT5G55700.2 | 45.260 | 327 | 166 | 3 | 195 | 508 | 39 | 365 | 5.49e-98 | 302 |
| Msa0755080 | AT5G18670.1 | 38.407 | 427 | 245 | 4 | 89 | 508 | 87 | 502 | 2.48e-90 | 287 |
Find 129 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTTACAGATTATT+TGG | 0.120196 | 5_2:-8845442 | Msa0755080:CDS |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5_2:+8844070 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5_2:+8844936 | None:intergenic |
| TAAAAGCATGTTGAATTATT+AGG | 0.193317 | 5_2:-8843510 | Msa0755080:three_prime_UTR |
| CTAGTTTACACAGACAAATT+AGG | 0.217572 | 5_2:-8845567 | Msa0755080:CDS |
| ATGGTCCAATGAAGTATAAT+TGG | 0.253077 | 5_2:-8846644 | Msa0755080:CDS |
| ACTTGTTTGAAATATGCTTT+TGG | 0.284260 | 5_2:+8844109 | None:intergenic |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5_2:-8844921 | Msa0755080:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5_2:-8846676 | Msa0755080:CDS |
| TATATTGAATTTCACATGTA+TGG | 0.303816 | 5_2:-8843940 | Msa0755080:CDS |
| GGTTGCTTGAGGGTGATAAT+TGG | 0.305293 | 5_2:-8843719 | Msa0755080:CDS |
| GGTTCGGTACGTAGATAATT+TGG | 0.306701 | 5_2:-8843429 | Msa0755080:intron |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5_2:-8844197 | Msa0755080:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5_2:-8844236 | Msa0755080:CDS |
| TTATGTTGGACACATAATTA+AGG | 0.321924 | 5_2:-8843613 | Msa0755080:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.324398 | 5_2:+8843972 | None:intergenic |
| CATCCCAATGAGATGTATTC+AGG | 0.331249 | 5_2:+8845534 | None:intergenic |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5_2:+8844909 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5_2:-8844927 | Msa0755080:CDS |
| GCTTCCCAATTATACTTCAT+TGG | 0.343253 | 5_2:+8846639 | None:intergenic |
| GAAGCATCAGCAGGGGCAAT+TGG | 0.347112 | 5_2:-8844305 | Msa0755080:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5_2:-8844178 | Msa0755080:CDS |
| CTGTAAAGAAAGACAAGAAA+TGG | 0.352936 | 5_2:-8846872 | Msa0755080:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | 5_2:-8846730 | Msa0755080:CDS |
| GACAGATTTACAGATTATTT+GGG | 0.378560 | 5_2:-8845441 | Msa0755080:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5_2:+8846774 | None:intergenic |
| CTTATCTAAGAATAAATAAG+AGG | 0.380389 | 5_2:-8843740 | Msa0755080:CDS |
| TAGTTTACACAGACAAATTA+GGG | 0.386153 | 5_2:-8845566 | Msa0755080:CDS |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5_2:-8843798 | Msa0755080:CDS |
| TTGTCTGTGTAAACTAGCTC+AGG | 0.393606 | 5_2:+8845573 | None:intergenic |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5_2:-8844070 | Msa0755080:CDS |
| CTTGCTGAAGCTGATTCATA+TGG | 0.414041 | 5_2:-8843645 | Msa0755080:CDS |
| AAATCCTGAATACATCTCAT+TGG | 0.419556 | 5_2:-8845538 | Msa0755080:CDS |
| CAGGAAATTCAAGTGGGACT+AGG | 0.423979 | 5_2:-8844990 | Msa0755080:CDS |
| AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5_2:-8845493 | Msa0755080:CDS |
| CCCATCAGTGTTGGCCGTGA+AGG | 0.426556 | 5_2:+8843450 | None:intergenic |
| ACGAAAGCTTCTCATGTAAT+CGG | 0.429869 | 5_2:+8845464 | None:intergenic |
| CTGATTTCTTCTAGCACCCA+TGG | 0.430727 | 5_2:+8845603 | None:intergenic |
| GGAGAATGATGTTATAATAG+AGG | 0.433712 | 5_2:-8843592 | Msa0755080:CDS |
| GGGCAATTGGGAAGAAAGAA+TGG | 0.442156 | 5_2:-8844292 | Msa0755080:CDS |
| TGTTTCTTTCTGATTAATCA+AGG | 0.443999 | 5_2:+8847031 | None:intergenic |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5_2:+8845501 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5_2:+8844937 | None:intergenic |
| TTGAAGAGTGCTGGTGTTGA+AGG | 0.453491 | 5_2:-8846705 | Msa0755080:CDS |
| CATGGGTGCTAGAAGAAATC+AGG | 0.455689 | 5_2:-8845602 | Msa0755080:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5_2:-8844080 | Msa0755080:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5_2:-8843627 | Msa0755080:CDS |
| TTTCACATGTATGGAAATGA+AGG | 0.460068 | 5_2:-8843931 | Msa0755080:CDS |
| AAGCATCAGCAGGGGCAATT+GGG | 0.462242 | 5_2:-8844304 | Msa0755080:CDS |
| ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5_2:-8845620 | Msa0755080:intron |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5_2:+8844945 | None:intergenic |
| TGATAATTGGAGGAAATTTG+TGG | 0.467073 | 5_2:-8843706 | Msa0755080:CDS |
| TTCAGTTTGTGACCAAAAGA+TGG | 0.467366 | 5_2:+8846948 | None:intergenic |
| AATCCTGAATACATCTCATT+GGG | 0.468064 | 5_2:-8845537 | Msa0755080:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.470424 | 5_2:+8844892 | None:intergenic |
| TGGTCCAATGAAGTATAATT+GGG | 0.473267 | 5_2:-8846643 | Msa0755080:CDS |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5_2:-8846682 | Msa0755080:CDS |
| GAACACATATATCATGTTGA+TGG | 0.479468 | 5_2:-8843550 | Msa0755080:three_prime_UTR |
| TCATCCTTGGAAGCATCAGC+AGG | 0.479509 | 5_2:-8844314 | Msa0755080:CDS |
| ATGGCAGGTGGTGAACTTGC+TGG | 0.480529 | 5_2:-8843837 | Msa0755080:CDS |
| TTGATGGCTTTGAAGAGTGC+TGG | 0.481934 | 5_2:-8846714 | Msa0755080:CDS |
| ACAGTATATGAGATCATCCT+TGG | 0.486046 | 5_2:-8844327 | Msa0755080:intron |
| ACTTGATTAACCAATCCTTC+TGG | 0.487449 | 5_2:+8843876 | None:intergenic |
| ATTGGTTAATCAAGTGAGAA+TGG | 0.490106 | 5_2:-8843868 | Msa0755080:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5_2:-8844938 | Msa0755080:CDS |
| CCATCAGTGTTGGCCGTGAA+GGG | 0.496816 | 5_2:+8843451 | None:intergenic |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5_2:-8843886 | Msa0755080:CDS |
| TAGCATTCCTCTACCTCCAT+GGG | 0.501230 | 5_2:-8845619 | Msa0755080:CDS |
| TGCTTGAGGGTGATAATTGG+AGG | 0.503043 | 5_2:-8843716 | Msa0755080:CDS |
| TCTAGCACCCATGGAGGTAG+AGG | 0.503923 | 5_2:+8845612 | None:intergenic |
| TGCCCCTGCTGATGCTTCCA+AGG | 0.505543 | 5_2:+8844310 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5_2:-8846774 | Msa0755080:CDS |
| ATAAATAAGAGGTTGCTTGA+GGG | 0.505894 | 5_2:-8843729 | Msa0755080:CDS |
| AAAAGCATATTTCAAACAAG+TGG | 0.507306 | 5_2:-8844107 | Msa0755080:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5_2:-8846683 | Msa0755080:CDS |
| GAAATGTTGGTGACTCCTGC+AGG | 0.512870 | 5_2:-8846539 | Msa0755080:intron |
| TGTAAAGAAAGACAAGAAAT+GGG | 0.514719 | 5_2:-8846871 | Msa0755080:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5_2:-8846552 | Msa0755080:CDS |
| AATAAATAAGAGGTTGCTTG+AGG | 0.517623 | 5_2:-8843730 | Msa0755080:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5_2:-8846616 | Msa0755080:CDS |
| GGCAATTGGGAAGAAAGAAT+GGG | 0.521028 | 5_2:-8844291 | Msa0755080:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.525311 | 5_2:-8843681 | Msa0755080:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5_2:-8846681 | Msa0755080:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5_2:-8845510 | Msa0755080:CDS |
| CATGCAACTGAATTAACTGC+TGG | 0.531917 | 5_2:-8844029 | Msa0755080:CDS |
| AGTGAGAATGGCAACAAAGA+TGG | 0.533714 | 5_2:-8843856 | Msa0755080:CDS |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5_2:-8844945 | Msa0755080:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5_2:-8846775 | Msa0755080:CDS |
| TGTCTGATGGTGGTAAACTA+AGG | 0.542826 | 5_2:-8843668 | Msa0755080:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.543820 | 5_2:+8845480 | None:intergenic |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5_2:+8844165 | None:intergenic |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5_2:-8844002 | Msa0755080:CDS |
| AACACATATATCATGTTGAT+GGG | 0.560154 | 5_2:-8843549 | Msa0755080:three_prime_UTR |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5_2:-8846686 | Msa0755080:CDS |
| GATGCTAATTGTTCACCAGA+AGG | 0.566913 | 5_2:-8843891 | Msa0755080:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.571037 | 5_2:-8843678 | Msa0755080:CDS |
| TGGTGGTGTCTCGAATGTAT+TGG | 0.573266 | 5_2:-8843409 | Msa0755080:three_prime_UTR |
| TTGCTGAAGCTGATTCATAT+GGG | 0.575219 | 5_2:-8843644 | Msa0755080:CDS |
| TGCTGGTGTTGAAGGAGTAA+TGG | 0.577099 | 5_2:-8846697 | Msa0755080:CDS |
| AGAATGGCAACAAAGATGGC+AGG | 0.578781 | 5_2:-8843852 | Msa0755080:CDS |
| CTGCTGGTTACTATAACACA+AGG | 0.578850 | 5_2:-8844013 | Msa0755080:CDS |
| CATCAGTGTTGGCCGTGAAG+GGG | 0.581635 | 5_2:+8843452 | None:intergenic |
| GCACAAATGCTAGCAAAGCA+TGG | 0.584330 | 5_2:-8843966 | Msa0755080:CDS |
| TCGGTACGTAGATAATTTGG+TGG | 0.585995 | 5_2:-8843426 | Msa0755080:intron |
| AAGAAAGAATGGGGAACAAG+TGG | 0.590370 | 5_2:-8844281 | Msa0755080:CDS |
| TGTCTGTGTAAACTAGCTCA+GGG | 0.595938 | 5_2:+8845574 | None:intergenic |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5_2:+8844966 | None:intergenic |
| AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5_2:-8844980 | Msa0755080:CDS |
| ACAAGTGGACCACATGACTC+AGG | 0.607814 | 5_2:-8844266 | Msa0755080:CDS |
| ACATTTGCAGGAAATTCAAG+TGG | 0.608489 | 5_2:-8844997 | Msa0755080:intron |
| CATCCTTGGAAGCATCAGCA+GGG | 0.618285 | 5_2:-8844313 | Msa0755080:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5_2:-8844152 | Msa0755080:CDS |
| TGGTGATTCGAATAGAGTAC+CGG | 0.636351 | 5_2:-8846811 | Msa0755080:CDS |
| CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5_2:-8844981 | Msa0755080:CDS |
| TTGTATTGACCTGAGTCATG+TGG | 0.648053 | 5_2:+8844257 | None:intergenic |
| GGTGAACAATTAGCATCACA+AGG | 0.655544 | 5_2:+8843897 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5_2:+8846792 | None:intergenic |
| ATCCTTGGAAGCATCAGCAG+GGG | 0.664828 | 5_2:-8844312 | Msa0755080:CDS |
| CATTTGCAGGAAATTCAAGT+GGG | 0.665537 | 5_2:-8844996 | Msa0755080:intron |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5_2:-8846771 | Msa0755080:CDS |
| ATGGCAACAAAGATGGCAGG+TGG | 0.674756 | 5_2:-8843849 | Msa0755080:CDS |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5_2:-8844243 | Msa0755080:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5_2:-8844898 | Msa0755080:intron |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5_2:-8846784 | Msa0755080:CDS |
| AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5_2:-8844979 | Msa0755080:CDS |
| CTCTATTCGAATCACCATCG+TGG | 0.716638 | 5_2:+8846817 | None:intergenic |
| GCAATTGGGAAGAAAGAATG+GGG | 0.724973 | 5_2:-8844290 | Msa0755080:CDS |
| ATTTCTTCTAGCACCCATGG+AGG | 0.727464 | 5_2:+8845606 | None:intergenic |
| TCTGTCACTCATAACCACGA+TGG | 0.739469 | 5_2:-8846831 | Msa0755080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATAAAAAATTTGGTTT+TGG | - | chr5_2:8844232-8844251 | Msa0755080:CDS | 10.0% |
| !!! | AAACCAAAAAATATTTTTAT+AGG | - | chr5_2:8844458-8844477 | Msa0755080:intron | 10.0% |
| !!! | AACCAAAAAATATTTTTATA+GGG | - | chr5_2:8844459-8844478 | Msa0755080:intron | 10.0% |
| !! | TTATTATCTATTACTATATT+AGG | + | chr5_2:8844534-8844553 | None:intergenic | 10.0% |
| !! | AATCCTAAATATAAATTATT+TGG | - | chr5_2:8845673-8845692 | Msa0755080:intron | 10.0% |
| !! | AGATATTATTACACTAAAAA+TGG | - | chr5_2:8843368-8843387 | Msa0755080:three_prime_UTR | 15.0% |
| !! | TAAAAATAAAATTCTAGTGT+AGG | + | chr5_2:8844108-8844127 | None:intergenic | 15.0% |
| !!! | TACACTAGAATTTTATTTTT+AGG | - | chr5_2:8844107-8844126 | Msa0755080:CDS | 15.0% |
| !!! | CCAAAAAAAATATTTTTACA+GGG | + | chr5_2:8844199-8844218 | None:intergenic | 15.0% |
| !!! | ACCAAAAAAAATATTTTTAC+AGG | + | chr5_2:8844200-8844219 | None:intergenic | 15.0% |
| !! | AAATCATTTCATATTGAAAT+TGG | + | chr5_2:8844377-8844396 | None:intergenic | 15.0% |
| !!! | AAATATAGAATATTTGGTTT+TGG | + | chr5_2:8844428-8844447 | None:intergenic | 15.0% |
| !! | TTTAGTTACTTATATATATG+TGG | - | chr5_2:8844700-8844719 | Msa0755080:intron | 15.0% |
| !!! | AGTCTTAGATTTTTTATTTT+TGG | + | chr5_2:8844784-8844803 | None:intergenic | 15.0% |
| !!! | TAAAAAATCTAAGACTAATT+TGG | - | chr5_2:8844788-8844807 | Msa0755080:intron | 15.0% |
| !!! | ACATTTGTTCAAAATTTTAA+CGG | - | chr5_2:8845130-8845149 | Msa0755080:intron | 15.0% |
| !!! | TTATTAAATTAACATCGATT+AGG | + | chr5_2:8845225-8845244 | None:intergenic | 15.0% |
| !! | NGTCCAAATAATTTATATTT+AGG | + | chr5_2:8845679-8845698 | None:intergenic | 15.0% |
| !!! | TTCAGAGATTTTTTTTTTTT+TGG | - | chr5_2:8845906-8845925 | Msa0755080:intron | 15.0% |
| !! | TTTAGGTAGTAATAATATAG+TGG | - | chr5_2:8844124-8844143 | Msa0755080:CDS | 20.0% |
| !!! | CCCTGTAAAAATATTTTTTT+TGG | - | chr5_2:8844196-8844215 | Msa0755080:CDS | 20.0% |
| !!! | CCAAATTTTTTATATTTGCA+GGG | + | chr5_2:8844229-8844248 | None:intergenic | 20.0% |
| !!! | ACCAAATTTTTTATATTTGC+AGG | + | chr5_2:8844230-8844249 | None:intergenic | 20.0% |
| !!! | CAATATGAATCAATTTTACA+AGG | + | chr5_2:8844279-8844298 | None:intergenic | 20.0% |
| !!! | CTTGTAAAATTGATTCATAT+TGG | - | chr5_2:8844277-8844296 | Msa0755080:CDS | 20.0% |
| !!! | AAATTGATTCATATTGGATT+TGG | - | chr5_2:8844283-8844302 | Msa0755080:CDS | 20.0% |
| !! | CAAATATTCTACATATTACA+AGG | + | chr5_2:8844310-8844329 | None:intergenic | 20.0% |
| !! | AGGACTAAAATGAATATTAT+AGG | - | chr5_2:8844349-8844368 | Msa0755080:intron | 20.0% |
| !! | GGACTAAAATGAATATTATA+GGG | - | chr5_2:8844350-8844369 | Msa0755080:intron | 20.0% |
| !!! | CAATATGAAATGATTTTACA+AGG | - | chr5_2:8844381-8844400 | Msa0755080:intron | 20.0% |
| !!! | GTCCCTATAAAAATATTTTT+TGG | + | chr5_2:8844464-8844483 | None:intergenic | 20.0% |
| !! | ATTAGGCTTAAATATGAAAA+TGG | + | chr5_2:8844517-8844536 | None:intergenic | 20.0% |
| !!! | TAGTTGAAATTTTGATCAAA+TGG | - | chr5_2:8844554-8844573 | Msa0755080:intron | 20.0% |
| !!! | TAAAATTTTGAACAAATGTG+TGG | + | chr5_2:8845129-8845148 | None:intergenic | 20.0% |
| !!! | CATTTGTTCAAAATTTTAAC+GGG | - | chr5_2:8845131-8845150 | Msa0755080:intron | 20.0% |
| !!! | ATTTGTTCAAAATTTTAACG+GGG | - | chr5_2:8845132-8845151 | Msa0755080:intron | 20.0% |
| !!! | TTAAGATATTTTGCAATCAA+AGG | + | chr5_2:8845875-8845894 | None:intergenic | 20.0% |
| !! | TATATTGAATTTCACATGTA+TGG | - | chr5_2:8846506-8846525 | Msa0755080:intron | 20.0% |
| !! | CTTATCTAAGAATAAATAAG+AGG | - | chr5_2:8846706-8846725 | Msa0755080:CDS | 20.0% |
| !!! | TAAAAGCATGTTGAATTATT+AGG | - | chr5_2:8846936-8846955 | Msa0755080:CDS | 20.0% |
| ! | TGTTTCTTTCTGATTAATCA+AGG | + | chr5_2:8843418-8843437 | None:intergenic | 25.0% |
| !!! | CCAAAAGATGGTTTAATTTT+TGG | + | chr5_2:8843489-8843508 | None:intergenic | 25.0% |
| !! | CCAAAAATTAAACCATCTTT+TGG | - | chr5_2:8843486-8843505 | Msa0755080:three_prime_UTR | 25.0% |
| ! | TGTAAAGAAAGACAAGAAAT+GGG | - | chr5_2:8843575-8843594 | Msa0755080:exon | 25.0% |
| ! | AAATATTCAACCACCAATTT+AGG | - | chr5_2:8843956-8843975 | Msa0755080:CDS | 25.0% |
| ! | GAATGTAACAACTATAAACT+TGG | + | chr5_2:8843991-8844010 | None:intergenic | 25.0% |
| ! | CCCTGCAAATATAAAAAATT+TGG | - | chr5_2:8844226-8844245 | Msa0755080:CDS | 25.0% |
| !!! | AAAAATTTGGTTTTGGTTCT+TGG | - | chr5_2:8844239-8844258 | Msa0755080:CDS | 25.0% |
| ! | AGGATTAAAACAAAATACCA+AGG | - | chr5_2:8844401-8844420 | Msa0755080:intron | 25.0% |
| ! | ACCAAATATTCTATATTTGC+AGG | - | chr5_2:8844430-8844449 | Msa0755080:intron | 25.0% |
| ! | CCAAATATTCTATATTTGCA+GGG | - | chr5_2:8844431-8844450 | Msa0755080:intron | 25.0% |
| ! | GTGGTGAATTTATATATATG+AGG | - | chr5_2:8844719-8844738 | Msa0755080:intron | 25.0% |
| ! | TAGTTTACACAGACAAATTA+GGG | - | chr5_2:8844880-8844899 | Msa0755080:intron | 25.0% |
| ! | TGACAGATTTACAGATTATT+TGG | - | chr5_2:8845004-8845023 | Msa0755080:intron | 25.0% |
| ! | GACAGATTTACAGATTATTT+GGG | - | chr5_2:8845005-8845024 | Msa0755080:intron | 25.0% |
| !! | TAAGTACTTCATCAATTTTG+TGG | - | chr5_2:8845042-8845061 | Msa0755080:intron | 25.0% |
| ! | ACCAAAGTTATAATGATACT+TGG | - | chr5_2:8845067-8845086 | Msa0755080:intron | 25.0% |
| !!! | TTTGTTCAAAATTTTAACGG+GGG | - | chr5_2:8845133-8845152 | Msa0755080:intron | 25.0% |
| !! | TTATCTAAGACATTACGTTA+AGG | + | chr5_2:8845199-8845218 | None:intergenic | 25.0% |
| ! | ACTAACTATCTTGCTTAATA+TGG | + | chr5_2:8845296-8845315 | None:intergenic | 25.0% |
| !! | GACATATTTTGTTACAACTA+AGG | - | chr5_2:8845630-8845649 | Msa0755080:intron | 25.0% |
| ! | TTATAGAGAAAATCTTTGTG+TGG | + | chr5_2:8845847-8845866 | None:intergenic | 25.0% |
| !!! | ACTTGTTTGAAATATGCTTT+TGG | + | chr5_2:8846340-8846359 | None:intergenic | 25.0% |
| !! | AAAAGCATATTTCAAACAAG+TGG | - | chr5_2:8846339-8846358 | Msa0755080:intron | 25.0% |
| ! | TTATGTTGGACACATAATTA+AGG | - | chr5_2:8846833-8846852 | Msa0755080:CDS | 25.0% |
| ! | AACACATATATCATGTTGAT+GGG | - | chr5_2:8846897-8846916 | Msa0755080:CDS | 25.0% |
| ! | TTTTGGACAAGAAACTTTGT+TGG | + | chr5_2:8843472-8843491 | None:intergenic | 30.0% |
| CTGTAAAGAAAGACAAGAAA+TGG | - | chr5_2:8843574-8843593 | Msa0755080:exon | 30.0% | |
| ATGGTCCAATGAAGTATAAT+TGG | - | chr5_2:8843802-8843821 | Msa0755080:CDS | 30.0% | |
| TGGTCCAATGAAGTATAATT+GGG | - | chr5_2:8843803-8843822 | Msa0755080:CDS | 30.0% | |
| ! | ATCTACATACAAAGGTATGT+AGG | - | chr5_2:8844076-8844095 | Msa0755080:CDS | 30.0% |
| CAAAATGTCAGATATTTGCA+GGG | + | chr5_2:8844168-8844187 | None:intergenic | 30.0% | |
| !! | GATTTTAATCCCTCAAAATG+AGG | - | chr5_2:8844329-8844348 | Msa0755080:intron | 30.0% |
| !! | CATTTTAGTCCTCATTTTGA+GGG | + | chr5_2:8844341-8844360 | None:intergenic | 30.0% |
| !! | TCATTTTAGTCCTCATTTTG+AGG | + | chr5_2:8844342-8844361 | None:intergenic | 30.0% |
| CCCTGCAAATATAGAATATT+TGG | + | chr5_2:8844434-8844453 | None:intergenic | 30.0% | |
| AAACCAAAACGTCAGATATT+TGG | - | chr5_2:8844486-8844505 | Msa0755080:intron | 30.0% | |
| !! | GATCCAGAAATTTTGAAAAG+TGG | + | chr5_2:8844750-8844769 | None:intergenic | 30.0% |
| !!! | TTTATTTTTGGTCTCAGTGA+CGG | + | chr5_2:8844772-8844791 | None:intergenic | 30.0% |
| CTAGTTTACACAGACAAATT+AGG | - | chr5_2:8844879-8844898 | Msa0755080:intron | 30.0% | |
| AAATCCTGAATACATCTCAT+TGG | - | chr5_2:8844908-8844927 | Msa0755080:CDS | 30.0% | |
| AATCCTGAATACATCTCATT+GGG | - | chr5_2:8844909-8844928 | Msa0755080:CDS | 30.0% | |
| GCCAAGTATCATTATAACTT+TGG | + | chr5_2:8845071-8845090 | None:intergenic | 30.0% | |
| GCAAGATAGTTAGTTATAAG+AGG | - | chr5_2:8845302-8845321 | Msa0755080:intron | 30.0% | |
| TTAAGACCAAATACATTTGC+AGG | - | chr5_2:8845437-8845456 | Msa0755080:CDS | 30.0% | |
| GAATTTCCTGCAAATGTATT+TGG | + | chr5_2:8845446-8845465 | None:intergenic | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5_2:8846203-8846222 | Msa0755080:intron | 30.0% | |
| !! | ACTGGATTTTTCAAAAGAGA+AGG | - | chr5_2:8846228-8846247 | Msa0755080:intron | 30.0% |
| ! | TTTTCAAAAGAGAAGGAACA+TGG | - | chr5_2:8846235-8846254 | Msa0755080:intron | 30.0% |
| TATAACACAAGGTTTCATGA+TGG | - | chr5_2:8846444-8846463 | Msa0755080:intron | 30.0% | |
| TTTCACATGTATGGAAATGA+AGG | - | chr5_2:8846515-8846534 | Msa0755080:intron | 30.0% | |
| ATTGGTTAATCAAGTGAGAA+TGG | - | chr5_2:8846578-8846597 | Msa0755080:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5_2:8846648-8846667 | Msa0755080:CDS | 30.0% | |
| AATAAATAAGAGGTTGCTTG+AGG | - | chr5_2:8846716-8846735 | Msa0755080:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+GGG | - | chr5_2:8846717-8846736 | Msa0755080:CDS | 30.0% | |
| TGATAATTGGAGGAAATTTG+TGG | - | chr5_2:8846740-8846759 | Msa0755080:CDS | 30.0% | |
| GGAGAATGATGTTATAATAG+AGG | - | chr5_2:8846854-8846873 | Msa0755080:CDS | 30.0% | |
| GAACACATATATCATGTTGA+TGG | - | chr5_2:8846896-8846915 | Msa0755080:CDS | 30.0% | |
| TTCAGTTTGTGACCAAAAGA+TGG | + | chr5_2:8843501-8843520 | None:intergenic | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5_2:8843716-8843735 | Msa0755080:CDS | 35.0% |
| GCTTCCCAATTATACTTCAT+TGG | + | chr5_2:8843810-8843829 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | chr5_2:8843843-8843862 | Msa0755080:CDS | 35.0% | |
| ! | GTCATGTCTTTTCATCAATG+TGG | - | chr5_2:8843882-8843901 | Msa0755080:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5_2:8843885-8843904 | Msa0755080:CDS | 35.0% |
| TTGGCAAATAGAGCCTAAAT+TGG | + | chr5_2:8843972-8843991 | None:intergenic | 35.0% | |
| CCAAAATGTCAGATATTTGC+AGG | + | chr5_2:8844169-8844188 | None:intergenic | 35.0% | |
| ! | CCTGCAAATATCTGACATTT+TGG | - | chr5_2:8844166-8844185 | Msa0755080:CDS | 35.0% |
| !!! | GAATATTTGGTTTTGGACCT+TGG | + | chr5_2:8844421-8844440 | None:intergenic | 35.0% |
| CAAAACGTCAGATATTTGGA+GGG | - | chr5_2:8844490-8844509 | Msa0755080:intron | 35.0% | |
| ! | AAAGTTGTGTTGTTGTGTCA+AGG | + | chr5_2:8844630-8844649 | None:intergenic | 35.0% |
| !! | CCAGAAATTTTGAAAAGTGG+AGG | + | chr5_2:8844747-8844766 | None:intergenic | 35.0% |
| !! | CCTCCACTTTTCAAAATTTC+TGG | - | chr5_2:8844744-8844763 | Msa0755080:intron | 35.0% |
| ACGAAAGCTTCTCATGTAAT+CGG | + | chr5_2:8844985-8845004 | None:intergenic | 35.0% | |
| ACATTTGCAGGAAATTCAAG+TGG | - | chr5_2:8845449-8845468 | Msa0755080:CDS | 35.0% | |
| CATTTGCAGGAAATTCAAGT+GGG | - | chr5_2:8845450-8845469 | Msa0755080:CDS | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | chr5_2:8845548-8845567 | Msa0755080:CDS | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | chr5_2:8845557-8845576 | None:intergenic | 35.0% | |
| TCCATTTGAGCACAACAATT+AGG | + | chr5_2:8845824-8845843 | None:intergenic | 35.0% | |
| ACAGTATATGAGATCATCCT+TGG | - | chr5_2:8846119-8846138 | Msa0755080:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5_2:8846210-8846229 | Msa0755080:intron | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5_2:8846222-8846241 | None:intergenic | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5_2:8846268-8846287 | Msa0755080:intron | 35.0% | |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5_2:8846294-8846313 | Msa0755080:intron | 35.0% |
| !! | ATATGCTTTTGGCTGATACA+AGG | + | chr5_2:8846329-8846348 | None:intergenic | 35.0% |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5_2:8846366-8846385 | Msa0755080:intron | 35.0% | |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5_2:8846379-8846398 | None:intergenic | 35.0% |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5_2:8846376-8846395 | Msa0755080:intron | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5_2:8846477-8846496 | None:intergenic | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | chr5_2:8846560-8846579 | Msa0755080:CDS | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | chr5_2:8846573-8846592 | None:intergenic | 35.0% | |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5_2:8846765-8846784 | Msa0755080:CDS | 35.0% |
| ! | TTGCTGAAGCTGATTCATAT+GGG | - | chr5_2:8846802-8846821 | Msa0755080:CDS | 35.0% |
| TATGGGACTGATCTTTATGT+TGG | - | chr5_2:8846819-8846838 | Msa0755080:CDS | 35.0% | |
| CTAAAAATGGCTCAAGCACT+TGG | - | chr5_2:8843381-8843400 | Msa0755080:three_prime_UTR | 40.0% | |
| TGGTGATTCGAATAGAGTAC+CGG | - | chr5_2:8843635-8843654 | Msa0755080:CDS | 40.0% | |
| AATGGCAACATCACAAACAC+CGG | + | chr5_2:8843657-8843676 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5_2:8843662-8843681 | Msa0755080:CDS | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5_2:8843672-8843691 | Msa0755080:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5_2:8843760-8843779 | Msa0755080:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5_2:8843764-8843783 | Msa0755080:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5_2:8843783-8843802 | Msa0755080:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5_2:8843830-8843849 | Msa0755080:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5_2:8843894-8843913 | Msa0755080:CDS | 40.0% |
| !! | AGTGTTATTTGCATACCTGC+AGG | + | chr5_2:8843925-8843944 | None:intergenic | 40.0% |
| GCAAATAGAGCCTAAATTGG+TGG | + | chr5_2:8843969-8843988 | None:intergenic | 40.0% | |
| ! | ATAGTCTTGCAAGACCAAAC+AGG | - | chr5_2:8844048-8844067 | Msa0755080:CDS | 40.0% |
| ! | TAGTCTTGCAAGACCAAACA+GGG | - | chr5_2:8844049-8844068 | Msa0755080:CDS | 40.0% |
| ! | CCTCCAAATATCTGACGTTT+TGG | + | chr5_2:8844492-8844511 | None:intergenic | 40.0% |
| CCAAAACGTCAGATATTTGG+AGG | - | chr5_2:8844489-8844508 | Msa0755080:intron | 40.0% | |
| ! | AAGTGTTGTGTGGTTTGTGT+GGG | + | chr5_2:8844580-8844599 | None:intergenic | 40.0% |
| !! | AAAGTGTTGTGTGGTTTGTG+TGG | + | chr5_2:8844581-8844600 | None:intergenic | 40.0% |
| ! | ACCACACAACACTTTTCTCT+TGG | - | chr5_2:8844586-8844605 | Msa0755080:intron | 40.0% |
| CAAGGTGTGTGTATATGTGT+GGG | + | chr5_2:8844612-8844631 | None:intergenic | 40.0% | |
| TCAAGGTGTGTGTATATGTG+TGG | + | chr5_2:8844613-8844632 | None:intergenic | 40.0% | |
| TGTCTGTGTAAACTAGCTCA+GGG | + | chr5_2:8844875-8844894 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACTAGCTC+AGG | + | chr5_2:8844876-8844895 | None:intergenic | 40.0% | |
| CATCCCAATGAGATGTATTC+AGG | + | chr5_2:8844915-8844934 | None:intergenic | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5_2:8845512-8845531 | None:intergenic | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5_2:8845513-8845532 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5_2:8845525-8845544 | Msa0755080:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5_2:8845540-8845559 | None:intergenic | 40.0% | |
| GCCTAATTGTTGTGCTCAAA+TGG | - | chr5_2:8845820-8845839 | Msa0755080:intron | 40.0% | |
| GGCAATTGGGAAGAAAGAAT+GGG | - | chr5_2:8846155-8846174 | Msa0755080:intron | 40.0% | |
| GCAATTGGGAAGAAAGAATG+GGG | - | chr5_2:8846156-8846175 | Msa0755080:intron | 40.0% | |
| AAGAAAGAATGGGGAACAAG+TGG | - | chr5_2:8846165-8846184 | Msa0755080:intron | 40.0% | |
| ! | TTGTATTGACCTGAGTCATG+TGG | + | chr5_2:8846192-8846211 | None:intergenic | 40.0% |
| GGAACATGGAACACAGAATA+TGG | - | chr5_2:8846249-8846268 | Msa0755080:intron | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5_2:8846284-8846303 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+TGG | - | chr5_2:8846417-8846436 | Msa0755080:intron | 40.0% | |
| ! | CTGCTGGTTACTATAACACA+AGG | - | chr5_2:8846433-8846452 | Msa0755080:intron | 40.0% |
| GGTGAACAATTAGCATCACA+AGG | + | chr5_2:8846552-8846571 | None:intergenic | 40.0% | |
| GATGCTAATTGTTCACCAGA+AGG | - | chr5_2:8846555-8846574 | Msa0755080:CDS | 40.0% | |
| AGTGAGAATGGCAACAAAGA+TGG | - | chr5_2:8846590-8846609 | Msa0755080:CDS | 40.0% | |
| !! | GGTCAAGTTTTGTCTACAAG+TGG | - | chr5_2:8846669-8846688 | Msa0755080:CDS | 40.0% |
| !! | TGTCTGATGGTGGTAAACTA+AGG | - | chr5_2:8846778-8846797 | Msa0755080:CDS | 40.0% |
| ! | CTTGCTGAAGCTGATTCATA+TGG | - | chr5_2:8846801-8846820 | Msa0755080:CDS | 40.0% |
| !! | TTTTTCAATGCACCCCTTCA+CGG | - | chr5_2:8846982-8847001 | Msa0755080:CDS | 40.0% |
| ! | GGTTCGGTACGTAGATAATT+TGG | - | chr5_2:8847017-8847036 | Msa0755080:CDS | 40.0% |
| TCGGTACGTAGATAATTTGG+TGG | - | chr5_2:8847020-8847039 | Msa0755080:CDS | 40.0% | |
| TCTGTCACTCATAACCACGA+TGG | - | chr5_2:8843615-8843634 | Msa0755080:CDS | 45.0% | |
| CTCTATTCGAATCACCATCG+TGG | + | chr5_2:8843632-8843651 | None:intergenic | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5_2:8843671-8843690 | Msa0755080:CDS | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5_2:8843675-8843694 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5_2:8843675-8843694 | Msa0755080:CDS | 45.0% | |
| !! | TTGATGGCTTTGAAGAGTGC+TGG | - | chr5_2:8843732-8843751 | Msa0755080:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGTGTTGA+AGG | - | chr5_2:8843741-8843760 | Msa0755080:CDS | 45.0% |
| ! | TGCTGGTGTTGAAGGAGTAA+TGG | - | chr5_2:8843749-8843768 | Msa0755080:CDS | 45.0% |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5_2:8843763-8843782 | Msa0755080:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5_2:8843765-8843784 | Msa0755080:CDS | 45.0% |
| TATGTAGATCCGTCCCTGTT+TGG | + | chr5_2:8844065-8844084 | None:intergenic | 45.0% | |
| AGGGACGGATCTACATACAA+AGG | - | chr5_2:8844068-8844087 | Msa0755080:CDS | 45.0% | |
| !! | GCCAAGAGAAAAGTGTTGTG+TGG | + | chr5_2:8844590-8844609 | None:intergenic | 45.0% |
| AATCAGATGCGAGATCGCAT+GGG | - | chr5_2:8844656-8844675 | Msa0755080:intron | 45.0% | |
| ATAGCATTCCTCTACCTCCA+TGG | - | chr5_2:8844826-8844845 | Msa0755080:intron | 45.0% | |
| TAGCATTCCTCTACCTCCAT+GGG | - | chr5_2:8844827-8844846 | Msa0755080:intron | 45.0% | |
| ATTTCTTCTAGCACCCATGG+AGG | + | chr5_2:8844843-8844862 | None:intergenic | 45.0% | |
| CTGATTTCTTCTAGCACCCA+TGG | + | chr5_2:8844846-8844865 | None:intergenic | 45.0% | |
| CATGGGTGCTAGAAGAAATC+AGG | - | chr5_2:8844844-8844863 | Msa0755080:intron | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | + | chr5_2:8844969-8844988 | None:intergenic | 45.0% | |
| TAACGGGGGCTATATATCGT+CGG | - | chr5_2:8845147-8845166 | Msa0755080:intron | 45.0% | |
| CAGGAAATTCAAGTGGGACT+AGG | - | chr5_2:8845456-8845475 | Msa0755080:CDS | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5_2:8845504-8845523 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5_2:8845501-8845520 | Msa0755080:CDS | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5_2:8845508-8845527 | Msa0755080:CDS | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5_2:8845519-8845538 | Msa0755080:CDS | 45.0% | |
| GGGCAATTGGGAAGAAAGAA+TGG | - | chr5_2:8846154-8846173 | Msa0755080:intron | 45.0% | |
| GCACAAATGCTAGCAAAGCA+TGG | - | chr5_2:8846480-8846499 | Msa0755080:intron | 45.0% | |
| AGAATGGCAACAAAGATGGC+AGG | - | chr5_2:8846594-8846613 | Msa0755080:CDS | 45.0% | |
| GGTTGCTTGAGGGTGATAAT+TGG | - | chr5_2:8846727-8846746 | Msa0755080:CDS | 45.0% | |
| TGCTTGAGGGTGATAATTGG+AGG | - | chr5_2:8846730-8846749 | Msa0755080:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5_2:8846768-8846787 | Msa0755080:CDS | 45.0% | |
| ! | TGGTGGTGTCTCGAATGTAT+TGG | - | chr5_2:8847037-8847056 | Msa0755080:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCCTGC+AGG | - | chr5_2:8843907-8843926 | Msa0755080:CDS | 50.0% |
| CTTGCAAGACCAAACAGGGA+CGG | - | chr5_2:8844053-8844072 | Msa0755080:CDS | 50.0% | |
| GAATCAGATGCGAGATCGCA+TGG | - | chr5_2:8844655-8844674 | Msa0755080:intron | 50.0% | |
| GAGATCGCATGGGAGATGAA+TGG | - | chr5_2:8844666-8844685 | Msa0755080:intron | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+AGG | - | chr5_2:8844936-8844955 | Msa0755080:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5_2:8844948-8844967 | None:intergenic | 50.0% | |
| AGCAGGAAGAACTCCACTTC+AGG | - | chr5_2:8844953-8844972 | Msa0755080:CDS | 50.0% | |
| AAGTGGGACTAGGTCCATGT+GGG | - | chr5_2:8845466-8845485 | Msa0755080:CDS | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5_2:8845483-8845502 | None:intergenic | 50.0% | |
| !! | TCATCCTTGGAAGCATCAGC+AGG | - | chr5_2:8846132-8846151 | Msa0755080:intron | 50.0% |
| !! | CATCCTTGGAAGCATCAGCA+GGG | - | chr5_2:8846133-8846152 | Msa0755080:intron | 50.0% |
| !! | ATCCTTGGAAGCATCAGCAG+GGG | - | chr5_2:8846134-8846153 | Msa0755080:intron | 50.0% |
| AAGCATCAGCAGGGGCAATT+GGG | - | chr5_2:8846142-8846161 | Msa0755080:intron | 50.0% | |
| ACAAGTGGACCACATGACTC+AGG | - | chr5_2:8846180-8846199 | Msa0755080:intron | 50.0% | |
| ATGGCAACAAAGATGGCAGG+TGG | - | chr5_2:8846597-8846616 | Msa0755080:CDS | 50.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5_2:8843770-8843789 | Msa0755080:CDS | 55.0% |
| TCTAGCACCCATGGAGGTAG+AGG | + | chr5_2:8844837-8844856 | None:intergenic | 55.0% | |
| CAAGTGGGACTAGGTCCATG+TGG | - | chr5_2:8845465-8845484 | Msa0755080:CDS | 55.0% | |
| AGTGGGACTAGGTCCATGTG+GGG | - | chr5_2:8845467-8845486 | Msa0755080:CDS | 55.0% | |
| ! | GAAGCATCAGCAGGGGCAAT+TGG | - | chr5_2:8846141-8846160 | Msa0755080:intron | 55.0% |
| ATGGCAGGTGGTGAACTTGC+TGG | - | chr5_2:8846609-8846628 | Msa0755080:CDS | 55.0% | |
| !! | CATCAGTGTTGGCCGTGAAG+GGG | + | chr5_2:8846997-8847016 | None:intergenic | 55.0% |
| !! | CCATCAGTGTTGGCCGTGAA+GGG | + | chr5_2:8846998-8847017 | None:intergenic | 55.0% |
| CCTTCACGGCCAACACTGAT+GGG | - | chr5_2:8846996-8847015 | Msa0755080:CDS | 55.0% | |
| !! | ACGGCCAACACTGATGGGTT+CGG | - | chr5_2:8847001-8847020 | Msa0755080:CDS | 55.0% |
| CGTACCGAACCCATCAGTGT+TGG | + | chr5_2:8847008-8847027 | None:intergenic | 55.0% | |
| TGCCCCTGCTGATGCTTCCA+AGG | + | chr5_2:8846139-8846158 | None:intergenic | 60.0% | |
| CCCTTCACGGCCAACACTGA+TGG | - | chr5_2:8846995-8847014 | Msa0755080:CDS | 60.0% | |
| !! | CCCATCAGTGTTGGCCGTGA+AGG | + | chr5_2:8846999-8847018 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 8843354 | 8847114 | 8843354 | ID=Msa0755080;Name=Msa0755080 |
| chr5_2 | mRNA | 8843354 | 8847114 | 8843354 | ID=Msa0755080-mRNA-1;Parent=Msa0755080;Name=Msa0755080-mRNA-1;_AED=0.28;_eAED=0.28;_QI=33|1|1|1|0.75|0.6|5|197|543 |
| chr5_2 | exon | 8843354 | 8843437 | 8843354 | ID=Msa0755080-mRNA-1:exon:4042;Parent=Msa0755080-mRNA-1 |
| chr5_2 | exon | 8843465 | 8844345 | 8843465 | ID=Msa0755080-mRNA-1:exon:4041;Parent=Msa0755080-mRNA-1 |
| chr5_2 | exon | 8844899 | 8845009 | 8844899 | ID=Msa0755080-mRNA-1:exon:4040;Parent=Msa0755080-mRNA-1 |
| chr5_2 | exon | 8845428 | 8845638 | 8845428 | ID=Msa0755080-mRNA-1:exon:4039;Parent=Msa0755080-mRNA-1 |
| chr5_2 | exon | 8846540 | 8847114 | 8846540 | ID=Msa0755080-mRNA-1:exon:4038;Parent=Msa0755080-mRNA-1 |
| chr5_2 | five_prime_UTR | 8847082 | 8847114 | 8847082 | ID=Msa0755080-mRNA-1:five_prime_utr;Parent=Msa0755080-mRNA-1 |
| chr5_2 | CDS | 8846540 | 8847081 | 8846540 | ID=Msa0755080-mRNA-1:cds;Parent=Msa0755080-mRNA-1 |
| chr5_2 | CDS | 8845428 | 8845638 | 8845428 | ID=Msa0755080-mRNA-1:cds;Parent=Msa0755080-mRNA-1 |
| chr5_2 | CDS | 8844899 | 8845009 | 8844899 | ID=Msa0755080-mRNA-1:cds;Parent=Msa0755080-mRNA-1 |
| chr5_2 | CDS | 8843578 | 8844345 | 8843578 | ID=Msa0755080-mRNA-1:cds;Parent=Msa0755080-mRNA-1 |
| chr5_2 | three_prime_UTR | 8843465 | 8843577 | 8843465 | ID=Msa0755080-mRNA-1:three_prime_utr;Parent=Msa0755080-mRNA-1 |
| chr5_2 | three_prime_UTR | 8843354 | 8843437 | 8843354 | ID=Msa0755080-mRNA-1:three_prime_utr;Parent=Msa0755080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
