AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253800 MtrunA17_Chr8g0370431 99.296 142 1 0 1 142 1 142 6.61e-98 277
Msa1253800 MtrunA17_Chr5g0407011 67.969 128 38 2 1 126 1 127 5.65e-54 166
Msa1253800 MtrunA17_Chr3g0143991 64.286 112 34 3 3 108 5 116 2.86e-37 124
Msa1253800 MtrunA17_Chr7g0242251 60.606 99 38 1 33 130 47 145 1.90e-30 107
Msa1253800 MtrunA17_Chr1g0212341 44.340 106 50 1 33 138 98 194 5.37e-24 92.4
Msa1253800 MtrunA17_Chr4g0052011 50.000 78 39 0 33 110 60 137 2.00e-22 86.7
Msa1253800 MtrunA17_Chr8g0387931 45.783 83 39 2 33 115 262 338 1.28e-12 63.9
Msa1253800 MtrunA17_Chr1g0155251 43.023 86 48 1 22 107 543 627 7.06e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253800 AT1G20693.2 61.871 139 40 4 3 138 14 142 2.70e-44 142
Msa1253800 AT2G17560.2 56.618 136 53 2 5 138 7 138 1.18e-42 138
Msa1253800 AT2G17560.1 56.618 136 53 2 5 138 7 138 1.18e-42 138
Msa1253800 AT1G20693.3 61.600 125 37 3 3 126 14 128 2.35e-40 132
Msa1253800 AT1G20693.1 61.600 125 37 3 3 126 14 128 2.42e-40 132
Msa1253800 AT2G17560.3 56.296 135 50 3 5 137 7 134 2.77e-40 132
Msa1253800 AT1G20696.1 68.932 103 31 1 25 126 23 125 1.05e-39 130
Msa1253800 AT3G51880.2 64.423 104 33 2 28 130 44 144 2.84e-37 125
Msa1253800 AT3G51880.5 64.423 104 33 2 28 130 44 144 3.60e-37 125
Msa1253800 AT3G51880.1 64.423 104 33 2 28 130 44 144 3.60e-37 125
Msa1253800 AT3G51880.3 64.423 104 33 2 28 130 44 144 3.60e-37 125
Msa1253800 AT1G20696.2 70.588 85 25 0 25 109 23 107 5.24e-35 119
Msa1253800 AT1G20696.5 70.588 85 25 0 25 109 23 107 7.56e-35 118
Msa1253800 AT3G51880.4 63.000 100 33 2 28 126 44 140 1.62e-34 118
Msa1253800 AT4G35570.1 44.444 117 60 1 3 119 5 116 1.35e-32 112
Msa1253800 AT4G35570.2 44.444 117 60 1 3 119 5 116 1.35e-32 112
Msa1253800 AT1G20696.3 61.798 89 33 1 45 132 1 89 2.02e-27 98.2
Msa1253800 AT1G20696.4 61.446 83 31 1 45 126 1 83 5.65e-25 92.0
Msa1253800 AT2G34450.4 43.820 89 49 1 37 124 63 151 2.56e-20 81.6
Msa1253800 AT2G34450.3 43.820 89 49 1 37 124 63 151 2.56e-20 81.6
Msa1253800 AT2G34450.1 43.820 89 49 1 37 124 63 151 2.56e-20 81.6
Msa1253800 AT2G34450.2 43.333 90 49 2 37 124 63 152 5.90e-19 78.2
Msa1253800 AT5G23420.1 50.000 72 33 2 28 98 106 175 2.85e-15 70.5
Msa1253800 AT4G11080.1 42.391 92 47 2 33 124 242 327 2.32e-11 60.5
Msa1253800 AT4G23800.1 42.308 78 40 2 33 108 375 449 3.23e-11 60.1
Msa1253800 AT4G23800.1 44.000 75 39 1 33 107 251 322 4.24e-11 59.7
Msa1253800 AT4G23800.2 42.308 78 40 2 33 108 369 443 3.35e-11 60.1
Msa1253800 AT4G23800.2 44.000 75 39 1 33 107 251 322 4.39e-11 59.7

Find 55 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGCCTCTTTGGCTTGTT+AGG 0.248195 8_2:+51503955 None:intergenic
GATACTGAACCGTACTTTAG+AGG 0.264950 8_2:+51502930 None:intergenic
GTTGCGTTGTTGTGAGATTT+TGG 0.268294 8_2:+51504285 None:intergenic
AAAGCACTTGGAGGCCTCTT+TGG 0.273715 8_2:+51503946 None:intergenic
CTTATACTGTTCTCTAAAAT+CGG 0.321982 8_2:+51503810 None:intergenic
ATTCACCAGTTTCTTGTTGT+AGG 0.325921 8_2:+51503394 None:intergenic
ACCACCACATGATGAAGTTT+AGG 0.333939 8_2:-51503060 Msa1253800:three_prime_UTR
GCGGCAACGGATTTGTTGTT+AGG 0.341320 8_2:+51503778 None:intergenic
TTACCGGTTATCAGCGGGTT+TGG 0.344714 8_2:+51504169 None:intergenic
TTGGAATCAGCTTTAACTTT+CGG 0.360829 8_2:+51504188 None:intergenic
GGGTAGGGAGTGAAGGGTAT+AGG 0.361659 8_2:+51504332 None:intergenic
AGCTTGAAGCGCAAAGGTGC+TGG 0.381485 8_2:-51504015 Msa1253800:CDS
CCACCACATGATGAAGTTTA+GGG 0.386914 8_2:-51503059 Msa1253800:three_prime_UTR
TTCTTTCTTCTTCAATGCCC+TGG 0.433917 8_2:+51503439 None:intergenic
CGTTTCAATTCTGTTCTGTT+CGG 0.436324 8_2:-51502870 Msa1253800:three_prime_UTR
TTCAATGCCCTGGCAGCATA+AGG 0.436854 8_2:+51503449 None:intergenic
ATTCCAAACCCGCTGATAAC+CGG 0.438213 8_2:-51504172 Msa1253800:intron
GAACGAGGGAGGGGATAAGA+AGG 0.438397 8_2:+51504311 None:intergenic
ACAAGCCTACAACAAGAAAC+TGG 0.447828 8_2:-51503399 Msa1253800:intron
TTTAACCTTGTAGGAGGATG+AGG 0.448986 8_2:-51503126 Msa1253800:intron
AAGCGCAAAGGTGCTGGAGC+TGG 0.461656 8_2:-51504009 Msa1253800:CDS
ATAAGAAGGGTAGGGAGTGA+AGG 0.464153 8_2:+51504325 None:intergenic
TTCATCCTCATCATTGACTT+CGG 0.480014 8_2:+51503235 None:intergenic
GCGATTTACCGGTTATCAGC+GGG 0.487221 8_2:+51504164 None:intergenic
ACAAGGCTCCTTATGCTGCC+AGG 0.487636 8_2:-51503457 Msa1253800:CDS
AGGGAGGGGATAAGAAGGGT+AGG 0.487679 8_2:+51504316 None:intergenic
CCCTAAACTTCATCATGTGG+TGG 0.495261 8_2:+51503059 None:intergenic
GAGATTTCTTACAGCGGCAA+CGG 0.506191 8_2:+51503765 None:intergenic
TAAGAAGGGTAGGGAGTGAA+GGG 0.533744 8_2:+51504326 None:intergenic
GGGAGGGGATAAGAAGGGTA+GGG 0.537776 8_2:+51504317 None:intergenic
GAAAAGCTTGCGGTGAAGCA+TGG 0.538505 8_2:-51503631 Msa1253800:CDS
AACATTGACTTTAAGTACAC+AGG 0.550744 8_2:+51502899 None:intergenic
GTGAAGAATCCTCTAAAGTA+CGG 0.552251 8_2:-51502939 Msa1253800:three_prime_UTR
CAAGGCTCCTTATGCTGCCA+GGG 0.553485 8_2:-51503456 Msa1253800:CDS
AAAACGAAGAAAGCACTTGG+AGG 0.557236 8_2:+51503937 None:intergenic
ATCAGCTTTAACTTTCGGCA+TGG 0.563633 8_2:+51504193 None:intergenic
GAGGGAAAAGACGAGGAAGA+TGG 0.570227 8_2:-51503275 Msa1253800:CDS
TTTCCCTAAACTTCATCATG+TGG 0.574768 8_2:+51503056 None:intergenic
AAAGGAACGAGTTACTGAAT+CGG 0.576145 8_2:+51504225 None:intergenic
AGTGATATGATTGGTTGAAG+TGG 0.587336 8_2:+51504452 None:intergenic
ATGAAAACGAAGAAAGCACT+TGG 0.589018 8_2:+51503934 None:intergenic
TCCGTGTGAAGTGATATGAT+TGG 0.592155 8_2:+51504443 None:intergenic
AATTAGGTCGGAAAAGCTTG+CGG 0.608945 8_2:-51503641 Msa1253800:intron
AAGATCCTAACAAGCCAAAG+AGG 0.610559 8_2:-51503960 Msa1253800:CDS
ACCAATCATATCACTTCACA+CGG 0.615803 8_2:-51504444 Msa1253800:five_prime_UTR
ATTGAAGTTTAGGGTTTACG+CGG 0.619581 8_2:+51504390 None:intergenic
GCAAAGGTGCTGGAGCTGGA+AGG 0.622916 8_2:-51504005 Msa1253800:CDS
AGCGATTTACCGGTTATCAG+CGG 0.628276 8_2:+51504163 None:intergenic
TTGAAGTTTAGGGTTTACGC+GGG 0.641750 8_2:+51504391 None:intergenic
AAAATCCGAAGTCAATGATG+AGG 0.642367 8_2:-51503240 Msa1253800:CDS
TTATTAGGAGGGAAAAGACG+AGG 0.645171 8_2:-51503282 Msa1253800:intron
AACGAGGGAGGGGATAAGAA+GGG 0.647481 8_2:+51504312 None:intergenic
CAATGATGAGGATGAAGATG+AGG 0.649448 8_2:-51503228 Msa1253800:intron
ATTGACTTTAAGTACACAGG+AGG 0.654407 8_2:+51502902 None:intergenic
CTTCACACGGATCAATGACG+TGG 0.671340 8_2:-51504431 Msa1253800:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATATTAAAAAAAT+TGG + chr8_2:51503181-51503200 None:intergenic 0.0%
!!! TTTTTATTTATTTTATTTTT+TGG - chr8_2:51503566-51503585 Msa1253800:intron 0.0%
!! TAAAAAAATATTAAAAAAAT+TGG + chr8_2:51503181-51503200 None:intergenic 0.0%
!!! TTTTTATTTATTTTATTTTT+TGG - chr8_2:51503566-51503585 Msa1253800:intron 0.0%
!!! TTAATTTTAATTGATGATTT+AGG - chr8_2:51503460-51503479 Msa1253800:CDS 10.0%
!!! TAATTTTTCGAAATTTAATT+AGG - chr8_2:51503637-51503656 Msa1253800:CDS 10.0%
!!! TTAATTTTAATTGATGATTT+AGG - chr8_2:51503460-51503479 Msa1253800:CDS 10.0%
!!! TAATTTTTCGAAATTTAATT+AGG - chr8_2:51503637-51503656 Msa1253800:CDS 10.0%
!! AATATTAAAAAAATTGGAGA+AGG + chr8_2:51503175-51503194 None:intergenic 15.0%
!!! TTCATTCATATTAGTAATTT+TGG - chr8_2:51503924-51503943 Msa1253800:intron 15.0%
!!! TAACTTTTTGTTGATTTATT+AGG - chr8_2:51503997-51504016 Msa1253800:CDS 15.0%
!!! GAAAAAAATATGTTTTGTTT+AGG - chr8_2:51504269-51504288 Msa1253800:five_prime_UTR 15.0%
!! AATATTAAAAAAATTGGAGA+AGG + chr8_2:51503175-51503194 None:intergenic 15.0%
!!! TTCATTCATATTAGTAATTT+TGG - chr8_2:51503924-51503943 Msa1253800:intron 15.0%
!!! TAACTTTTTGTTGATTTATT+AGG - chr8_2:51503997-51504016 Msa1253800:CDS 15.0%
!!! GAAAAAAATATGTTTTGTTT+AGG - chr8_2:51504269-51504288 Msa1253800:five_prime_UTR 15.0%
!! GAATGAAAAATTGAAGTTTA+GGG + chr8_2:51502916-51502935 None:intergenic 20.0%
!! TGAATGAAAAATTGAAGTTT+AGG + chr8_2:51502917-51502936 None:intergenic 20.0%
!!! ATTTTTTGGATCATAATTTG+TGG - chr8_2:51503580-51503599 Msa1253800:intron 20.0%
!!! TTTTCGAAATTTAATTAGGT+CGG - chr8_2:51503641-51503660 Msa1253800:intron 20.0%
!!! TTTTTGTTGATTTATTAGGA+GGG - chr8_2:51504001-51504020 Msa1253800:CDS 20.0%
!! TATGTATGATGATAATTGAA+TGG - chr8_2:51504127-51504146 Msa1253800:intron 20.0%
!!! AGTTTATTTTTTAACCTTGT+AGG - chr8_2:51504159-51504178 Msa1253800:intron 20.0%
!!! AATATGTTTTGTTTAGGTTA+TGG - chr8_2:51504275-51504294 Msa1253800:five_prime_UTR 20.0%
!! ACAATAAACGAAACAAAAAT+TGG + chr8_2:51504466-51504485 None:intergenic 20.0%
!! GAATGAAAAATTGAAGTTTA+GGG + chr8_2:51502916-51502935 None:intergenic 20.0%
!! TGAATGAAAAATTGAAGTTT+AGG + chr8_2:51502917-51502936 None:intergenic 20.0%
!!! ATTTTTTGGATCATAATTTG+TGG - chr8_2:51503580-51503599 Msa1253800:intron 20.0%
!!! TTTTCGAAATTTAATTAGGT+CGG - chr8_2:51503641-51503660 Msa1253800:intron 20.0%
!!! TTTTTGTTGATTTATTAGGA+GGG - chr8_2:51504001-51504020 Msa1253800:CDS 20.0%
!! TATGTATGATGATAATTGAA+TGG - chr8_2:51504127-51504146 Msa1253800:intron 20.0%
!!! AGTTTATTTTTTAACCTTGT+AGG - chr8_2:51504159-51504178 Msa1253800:intron 20.0%
!!! AATATGTTTTGTTTAGGTTA+TGG - chr8_2:51504275-51504294 Msa1253800:five_prime_UTR 20.0%
!! ACAATAAACGAAACAAAAAT+TGG + chr8_2:51504466-51504485 None:intergenic 20.0%
!!! CTGATTTGTTCGTTTTTTAA+CGG - chr8_2:51503433-51503452 Msa1253800:CDS 25.0%
!!! CTTATACTGTTCTCTAAAAT+CGG + chr8_2:51503487-51503506 None:intergenic 25.0%
!! AATTTGTGGATTTTTACTGT+CGG - chr8_2:51503594-51503613 Msa1253800:intron 25.0%
!!! CTTTTTGTTGATTTATTAGG+AGG - chr8_2:51504000-51504019 Msa1253800:CDS 25.0%
!!! TTATTTTTTAACCTTGTAGG+AGG - chr8_2:51504162-51504181 Msa1253800:intron 25.0%
!!! CTGATTTGTTCGTTTTTTAA+CGG - chr8_2:51503433-51503452 Msa1253800:CDS 25.0%
!!! CTTATACTGTTCTCTAAAAT+CGG + chr8_2:51503487-51503506 None:intergenic 25.0%
!! AATTTGTGGATTTTTACTGT+CGG - chr8_2:51503594-51503613 Msa1253800:intron 25.0%
!!! CTTTTTGTTGATTTATTAGG+AGG - chr8_2:51504000-51504019 Msa1253800:CDS 25.0%
!!! TTATTTTTTAACCTTGTAGG+AGG - chr8_2:51504162-51504181 Msa1253800:intron 25.0%
AGAGAAAACGCAAAGAAAAA+AGG + chr8_2:51502942-51502961 None:intergenic 30.0%
! TTGGAATCAGCTTTAACTTT+CGG + chr8_2:51503109-51503128 None:intergenic 30.0%
!! TTTCCGATTTGAATCTGTTT+TGG - chr8_2:51503394-51503413 Msa1253800:intron 30.0%
CAACCAAAACAGATTCAAAT+CGG + chr8_2:51503400-51503419 None:intergenic 30.0%
!!! GTACTGTGATTTTGTTTTTC+AGG - chr8_2:51503814-51503833 Msa1253800:CDS 30.0%
!!! TGATTTTGTTTTTCAGGACA+AGG - chr8_2:51503820-51503839 Msa1253800:intron 30.0%
GAAGTTTAGGGAAAAATTGT+TGG - chr8_2:51504247-51504266 Msa1253800:five_prime_UTR 30.0%
!! AACATTGACTTTAAGTACAC+AGG + chr8_2:51504398-51504417 None:intergenic 30.0%
ACGAAACAAAAATTGGAAGT+TGG + chr8_2:51504459-51504478 None:intergenic 30.0%
AGAGAAAACGCAAAGAAAAA+AGG + chr8_2:51502942-51502961 None:intergenic 30.0%
! TTGGAATCAGCTTTAACTTT+CGG + chr8_2:51503109-51503128 None:intergenic 30.0%
!! TTTCCGATTTGAATCTGTTT+TGG - chr8_2:51503394-51503413 Msa1253800:intron 30.0%
CAACCAAAACAGATTCAAAT+CGG + chr8_2:51503400-51503419 None:intergenic 30.0%
!!! GTACTGTGATTTTGTTTTTC+AGG - chr8_2:51503814-51503833 Msa1253800:CDS 30.0%
!!! TGATTTTGTTTTTCAGGACA+AGG - chr8_2:51503820-51503839 Msa1253800:intron 30.0%
GAAGTTTAGGGAAAAATTGT+TGG - chr8_2:51504247-51504266 Msa1253800:five_prime_UTR 30.0%
!! AACATTGACTTTAAGTACAC+AGG + chr8_2:51504398-51504417 None:intergenic 30.0%
ACGAAACAAAAATTGGAAGT+TGG + chr8_2:51504459-51504478 None:intergenic 30.0%
! AGTGATATGATTGGTTGAAG+TGG + chr8_2:51502845-51502864 None:intergenic 35.0%
ACCAATCATATCACTTCACA+CGG - chr8_2:51502850-51502869 Msa1253800:three_prime_UTR 35.0%
! ATTGAAGTTTAGGGTTTACG+CGG + chr8_2:51502907-51502926 None:intergenic 35.0%
AAAGGAACGAGTTACTGAAT+CGG + chr8_2:51503072-51503091 None:intergenic 35.0%
TTGGAGAAGGAAAAATCGAA+CGG + chr8_2:51503162-51503181 None:intergenic 35.0%
!! ATGAAAACGAAGAAAGCACT+TGG + chr8_2:51503363-51503382 None:intergenic 35.0%
GTAAACGAGATTTCTTACAG+CGG + chr8_2:51503538-51503557 None:intergenic 35.0%
! ATTCACCAGTTTCTTGTTGT+AGG + chr8_2:51503903-51503922 None:intergenic 35.0%
AAAATCCGAAGTCAATGATG+AGG - chr8_2:51504054-51504073 Msa1253800:intron 35.0%
!! TTCATCCTCATCATTGACTT+CGG + chr8_2:51504062-51504081 None:intergenic 35.0%
TTTCCCTAAACTTCATCATG+TGG + chr8_2:51504241-51504260 None:intergenic 35.0%
!! GTGAAGAATCCTCTAAAGTA+CGG - chr8_2:51504355-51504374 Msa1253800:five_prime_UTR 35.0%
! ATTGACTTTAAGTACACAGG+AGG + chr8_2:51504395-51504414 None:intergenic 35.0%
CGTTTCAATTCTGTTCTGTT+CGG - chr8_2:51504424-51504443 Msa1253800:five_prime_UTR 35.0%
! AGTGATATGATTGGTTGAAG+TGG + chr8_2:51502845-51502864 None:intergenic 35.0%
ACCAATCATATCACTTCACA+CGG - chr8_2:51502850-51502869 Msa1253800:three_prime_UTR 35.0%
! ATTGAAGTTTAGGGTTTACG+CGG + chr8_2:51502907-51502926 None:intergenic 35.0%
AAAGGAACGAGTTACTGAAT+CGG + chr8_2:51503072-51503091 None:intergenic 35.0%
TTGGAGAAGGAAAAATCGAA+CGG + chr8_2:51503162-51503181 None:intergenic 35.0%
!! ATGAAAACGAAGAAAGCACT+TGG + chr8_2:51503363-51503382 None:intergenic 35.0%
GTAAACGAGATTTCTTACAG+CGG + chr8_2:51503538-51503557 None:intergenic 35.0%
! ATTCACCAGTTTCTTGTTGT+AGG + chr8_2:51503903-51503922 None:intergenic 35.0%
AAAATCCGAAGTCAATGATG+AGG - chr8_2:51504054-51504073 Msa1253800:intron 35.0%
!! TTCATCCTCATCATTGACTT+CGG + chr8_2:51504062-51504081 None:intergenic 35.0%
TTTCCCTAAACTTCATCATG+TGG + chr8_2:51504241-51504260 None:intergenic 35.0%
!! GTGAAGAATCCTCTAAAGTA+CGG - chr8_2:51504355-51504374 Msa1253800:five_prime_UTR 35.0%
! ATTGACTTTAAGTACACAGG+AGG + chr8_2:51504395-51504414 None:intergenic 35.0%
CGTTTCAATTCTGTTCTGTT+CGG - chr8_2:51504424-51504443 Msa1253800:five_prime_UTR 35.0%
TCCGTGTGAAGTGATATGAT+TGG + chr8_2:51502854-51502873 None:intergenic 40.0%
! TTGAAGTTTAGGGTTTACGC+GGG + chr8_2:51502906-51502925 None:intergenic 40.0%
! GTTGCGTTGTTGTGAGATTT+TGG + chr8_2:51503012-51503031 None:intergenic 40.0%
! ATCAGCTTTAACTTTCGGCA+TGG + chr8_2:51503104-51503123 None:intergenic 40.0%
!!! GATTTTAGCTTGAAGCGCAA+AGG - chr8_2:51503273-51503292 Msa1253800:CDS 40.0%
AAGATCCTAACAAGCCAAAG+AGG - chr8_2:51503334-51503353 Msa1253800:intron 40.0%
!! AAAACGAAGAAAGCACTTGG+AGG + chr8_2:51503360-51503379 None:intergenic 40.0%
AATTAGGTCGGAAAAGCTTG+CGG - chr8_2:51503653-51503672 Msa1253800:intron 40.0%
TTCTTTCTTCTTCAATGCCC+TGG + chr8_2:51503858-51503877 None:intergenic 40.0%
ACAAGCCTACAACAAGAAAC+TGG - chr8_2:51503895-51503914 Msa1253800:intron 40.0%
TTATTAGGAGGGAAAAGACG+AGG - chr8_2:51504012-51504031 Msa1253800:CDS 40.0%
CAATGATGAGGATGAAGATG+AGG - chr8_2:51504066-51504085 Msa1253800:intron 40.0%
TTTAACCTTGTAGGAGGATG+AGG - chr8_2:51504168-51504187 Msa1253800:intron 40.0%
ACCACCACATGATGAAGTTT+AGG - chr8_2:51504234-51504253 Msa1253800:five_prime_UTR 40.0%
CCACCACATGATGAAGTTTA+GGG - chr8_2:51504235-51504254 Msa1253800:five_prime_UTR 40.0%
GATACTGAACCGTACTTTAG+AGG + chr8_2:51504367-51504386 None:intergenic 40.0%
TCCGTGTGAAGTGATATGAT+TGG + chr8_2:51502854-51502873 None:intergenic 40.0%
! TTGAAGTTTAGGGTTTACGC+GGG + chr8_2:51502906-51502925 None:intergenic 40.0%
! GTTGCGTTGTTGTGAGATTT+TGG + chr8_2:51503012-51503031 None:intergenic 40.0%
! ATCAGCTTTAACTTTCGGCA+TGG + chr8_2:51503104-51503123 None:intergenic 40.0%
!!! GATTTTAGCTTGAAGCGCAA+AGG - chr8_2:51503273-51503292 Msa1253800:CDS 40.0%
AAGATCCTAACAAGCCAAAG+AGG - chr8_2:51503334-51503353 Msa1253800:intron 40.0%
!! AAAACGAAGAAAGCACTTGG+AGG + chr8_2:51503360-51503379 None:intergenic 40.0%
AATTAGGTCGGAAAAGCTTG+CGG - chr8_2:51503653-51503672 Msa1253800:intron 40.0%
TTCTTTCTTCTTCAATGCCC+TGG + chr8_2:51503858-51503877 None:intergenic 40.0%
ACAAGCCTACAACAAGAAAC+TGG - chr8_2:51503895-51503914 Msa1253800:intron 40.0%
TTATTAGGAGGGAAAAGACG+AGG - chr8_2:51504012-51504031 Msa1253800:CDS 40.0%
CAATGATGAGGATGAAGATG+AGG - chr8_2:51504066-51504085 Msa1253800:intron 40.0%
TTTAACCTTGTAGGAGGATG+AGG - chr8_2:51504168-51504187 Msa1253800:intron 40.0%
ACCACCACATGATGAAGTTT+AGG - chr8_2:51504234-51504253 Msa1253800:five_prime_UTR 40.0%
CCACCACATGATGAAGTTTA+GGG - chr8_2:51504235-51504254 Msa1253800:five_prime_UTR 40.0%
GATACTGAACCGTACTTTAG+AGG + chr8_2:51504367-51504386 None:intergenic 40.0%
TAAGAAGGGTAGGGAGTGAA+GGG + chr8_2:51502971-51502990 None:intergenic 45.0%
ATAAGAAGGGTAGGGAGTGA+AGG + chr8_2:51502972-51502991 None:intergenic 45.0%
!!! TGAGATTTTGGAGCGAACGA+GGG + chr8_2:51503000-51503019 None:intergenic 45.0%
ATTCCAAACCCGCTGATAAC+CGG - chr8_2:51503122-51503141 Msa1253800:intron 45.0%
! AGCGATTTACCGGTTATCAG+CGG + chr8_2:51503134-51503153 None:intergenic 45.0%
AACGGAGAGAAGCGATTTAC+CGG + chr8_2:51503144-51503163 None:intergenic 45.0%
GAGATTTCTTACAGCGGCAA+CGG + chr8_2:51503532-51503551 None:intergenic 45.0%
ATCATCCTCATCCTCCTACA+AGG + chr8_2:51504176-51504195 None:intergenic 45.0%
CCCTAAACTTCATCATGTGG+TGG + chr8_2:51504238-51504257 None:intergenic 45.0%
TAAGAAGGGTAGGGAGTGAA+GGG + chr8_2:51502971-51502990 None:intergenic 45.0%
ATAAGAAGGGTAGGGAGTGA+AGG + chr8_2:51502972-51502991 None:intergenic 45.0%
!!! TGAGATTTTGGAGCGAACGA+GGG + chr8_2:51503000-51503019 None:intergenic 45.0%
ATTCCAAACCCGCTGATAAC+CGG - chr8_2:51503122-51503141 Msa1253800:intron 45.0%
! AGCGATTTACCGGTTATCAG+CGG + chr8_2:51503134-51503153 None:intergenic 45.0%
AACGGAGAGAAGCGATTTAC+CGG + chr8_2:51503144-51503163 None:intergenic 45.0%
GAGATTTCTTACAGCGGCAA+CGG + chr8_2:51503532-51503551 None:intergenic 45.0%
ATCATCCTCATCCTCCTACA+AGG + chr8_2:51504176-51504195 None:intergenic 45.0%
CCCTAAACTTCATCATGTGG+TGG + chr8_2:51504238-51504257 None:intergenic 45.0%
CTTCACACGGATCAATGACG+TGG - chr8_2:51502863-51502882 Msa1253800:three_prime_UTR 50.0%
AACGAGGGAGGGGATAAGAA+GGG + chr8_2:51502985-51503004 None:intergenic 50.0%
!!! ATTTTGGAGCGAACGAGGGA+GGG + chr8_2:51502996-51503015 None:intergenic 50.0%
!!! GTGAGATTTTGGAGCGAACG+AGG + chr8_2:51503001-51503020 None:intergenic 50.0%
TCGGCATGGCGAAAAACGAA+AGG + chr8_2:51503090-51503109 None:intergenic 50.0%
! TTACCGGTTATCAGCGGGTT+TGG + chr8_2:51503128-51503147 None:intergenic 50.0%
! GCGATTTACCGGTTATCAGC+GGG + chr8_2:51503133-51503152 None:intergenic 50.0%
! AAAGCACTTGGAGGCCTCTT+TGG + chr8_2:51503351-51503370 None:intergenic 50.0%
!! GCGGCAACGGATTTGTTGTT+AGG + chr8_2:51503519-51503538 None:intergenic 50.0%
GAAAAGCTTGCGGTGAAGCA+TGG - chr8_2:51503663-51503682 Msa1253800:intron 50.0%
TTCAATGCCCTGGCAGCATA+AGG + chr8_2:51503848-51503867 None:intergenic 50.0%
GAGGGAAAAGACGAGGAAGA+TGG - chr8_2:51504019-51504038 Msa1253800:intron 50.0%
CTTCACACGGATCAATGACG+TGG - chr8_2:51502863-51502882 Msa1253800:three_prime_UTR 50.0%
AACGAGGGAGGGGATAAGAA+GGG + chr8_2:51502985-51503004 None:intergenic 50.0%
!!! ATTTTGGAGCGAACGAGGGA+GGG + chr8_2:51502996-51503015 None:intergenic 50.0%
!!! GTGAGATTTTGGAGCGAACG+AGG + chr8_2:51503001-51503020 None:intergenic 50.0%
TCGGCATGGCGAAAAACGAA+AGG + chr8_2:51503090-51503109 None:intergenic 50.0%
! TTACCGGTTATCAGCGGGTT+TGG + chr8_2:51503128-51503147 None:intergenic 50.0%
! GCGATTTACCGGTTATCAGC+GGG + chr8_2:51503133-51503152 None:intergenic 50.0%
! AAAGCACTTGGAGGCCTCTT+TGG + chr8_2:51503351-51503370 None:intergenic 50.0%
!! GCGGCAACGGATTTGTTGTT+AGG + chr8_2:51503519-51503538 None:intergenic 50.0%
GAAAAGCTTGCGGTGAAGCA+TGG - chr8_2:51503663-51503682 Msa1253800:intron 50.0%
TTCAATGCCCTGGCAGCATA+AGG + chr8_2:51503848-51503867 None:intergenic 50.0%
GAGGGAAAAGACGAGGAAGA+TGG - chr8_2:51504019-51504038 Msa1253800:intron 50.0%
! GGGTAGGGAGTGAAGGGTAT+AGG + chr8_2:51502965-51502984 None:intergenic 55.0%
GGGAGGGGATAAGAAGGGTA+GGG + chr8_2:51502980-51502999 None:intergenic 55.0%
AGGGAGGGGATAAGAAGGGT+AGG + chr8_2:51502981-51503000 None:intergenic 55.0%
GAACGAGGGAGGGGATAAGA+AGG + chr8_2:51502986-51503005 None:intergenic 55.0%
!!! TTTTGGAGCGAACGAGGGAG+GGG + chr8_2:51502995-51503014 None:intergenic 55.0%
!!! GATTTTGGAGCGAACGAGGG+AGG + chr8_2:51502997-51503016 None:intergenic 55.0%
! AGCTTGAAGCGCAAAGGTGC+TGG - chr8_2:51503279-51503298 Msa1253800:intron 55.0%
!! GGAGGCCTCTTTGGCTTGTT+AGG + chr8_2:51503342-51503361 None:intergenic 55.0%
ACAAGGCTCCTTATGCTGCC+AGG - chr8_2:51503837-51503856 Msa1253800:intron 55.0%
CAAGGCTCCTTATGCTGCCA+GGG - chr8_2:51503838-51503857 Msa1253800:intron 55.0%
! GGGTAGGGAGTGAAGGGTAT+AGG + chr8_2:51502965-51502984 None:intergenic 55.0%
GGGAGGGGATAAGAAGGGTA+GGG + chr8_2:51502980-51502999 None:intergenic 55.0%
AGGGAGGGGATAAGAAGGGT+AGG + chr8_2:51502981-51503000 None:intergenic 55.0%
GAACGAGGGAGGGGATAAGA+AGG + chr8_2:51502986-51503005 None:intergenic 55.0%
!!! TTTTGGAGCGAACGAGGGAG+GGG + chr8_2:51502995-51503014 None:intergenic 55.0%
!!! GATTTTGGAGCGAACGAGGG+AGG + chr8_2:51502997-51503016 None:intergenic 55.0%
! AGCTTGAAGCGCAAAGGTGC+TGG - chr8_2:51503279-51503298 Msa1253800:intron 55.0%
!! GGAGGCCTCTTTGGCTTGTT+AGG + chr8_2:51503342-51503361 None:intergenic 55.0%
ACAAGGCTCCTTATGCTGCC+AGG - chr8_2:51503837-51503856 Msa1253800:intron 55.0%
CAAGGCTCCTTATGCTGCCA+GGG - chr8_2:51503838-51503857 Msa1253800:intron 55.0%
!! AAGCGCAAAGGTGCTGGAGC+TGG - chr8_2:51503285-51503304 Msa1253800:intron 60.0%
!! GCAAAGGTGCTGGAGCTGGA+AGG - chr8_2:51503289-51503308 Msa1253800:intron 60.0%
!! AAGCGCAAAGGTGCTGGAGC+TGG - chr8_2:51503285-51503304 Msa1253800:intron 60.0%
!! GCAAAGGTGCTGGAGCTGGA+AGG - chr8_2:51503289-51503308 Msa1253800:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 51502822 51504494 51502822 ID=Msa1253800;Name=Msa1253800
chr8_2 mRNA 51502822 51504494 51502822 ID=Msa1253800-mRNA-1;Parent=Msa1253800;Name=Msa1253800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=281|1|1|1|1|1|7|281|142
chr8_2 exon 51502822 51503135 51502822 ID=Msa1253800-mRNA-1:exon:15831;Parent=Msa1253800-mRNA-1
chr8_2 exon 51503229 51503297 51503229 ID=Msa1253800-mRNA-1:exon:15830;Parent=Msa1253800-mRNA-1
chr8_2 exon 51503400 51503480 51503400 ID=Msa1253800-mRNA-1:exon:15829;Parent=Msa1253800-mRNA-1
chr8_2 exon 51503613 51503657 51503613 ID=Msa1253800-mRNA-1:exon:15828;Parent=Msa1253800-mRNA-1
chr8_2 exon 51503777 51503834 51503777 ID=Msa1253800-mRNA-1:exon:15827;Parent=Msa1253800-mRNA-1
chr8_2 exon 51503934 51504035 51503934 ID=Msa1253800-mRNA-1:exon:15826;Parent=Msa1253800-mRNA-1
chr8_2 exon 51504173 51504494 51504173 ID=Msa1253800-mRNA-1:exon:15825;Parent=Msa1253800-mRNA-1
chr8_2 five_prime_UTR 51504214 51504494 51504214 ID=Msa1253800-mRNA-1:five_prime_utr;Parent=Msa1253800-mRNA-1
chr8_2 CDS 51504173 51504213 51504173 ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2 CDS 51503934 51504035 51503934 ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2 CDS 51503777 51503834 51503777 ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2 CDS 51503613 51503657 51503613 ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2 CDS 51503400 51503480 51503400 ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2 CDS 51503229 51503297 51503229 ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2 CDS 51503103 51503135 51503103 ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2 three_prime_UTR 51502822 51503102 51502822 ID=Msa1253800-mRNA-1:three_prime_utr;Parent=Msa1253800-mRNA-1
Gene Sequence

>Msa1253800

ATGCCGAAAGTTAAAGCTGATTCCAAACCCGCTGATAACCGCTTGAAGCGCAAAGGTGCTGGAGCTGGAAGGAAACAGACGAAGAAAGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCCGATTTTAGAGAACAGTATAAGAAAGATCATCCTAACAACAAATCCGTTGCCGCTGTCGGAAAAGCTTGCGGTGAAGCATGGAAATCGATGTCTGAAGAAGACAAGGCTCCTTATGCTGCCAGGGCATTGAAGAAGAAAGAAGAGTATGAAGTTGCTACACAAGCCTACAACAAGAAACTGGAGGGAAAAGACGAGGAAGATGGTTCTGACAAGTCAAAATCCGAAGTCAATGATGAGGATGAAGATGAGGAGGATGAGGATGATGATGAAGATGATGACTGA

Protein sequence

>Msa1253800

MPKVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDKAPYAARALKKKEEYEVATQAYNKKLEGKDEEDGSDKSKSEVNDEDEDEEDEDDDEDDD*