AlfalfaGEDB | Msa1253800

M. sativa cultivar zhongmu-4 / Msa1253800

KEGG: K10802|K11295|K11296
GO: GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006325 GO:0006333 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030527 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00505.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1253800	XP_013446326.1	99.296	142	1	0	1	142	1	142	7.18e-94	277

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1253800	sp\|P40620\|HMGL_VICFA	73.846	130	28	2	3	126	5	134	6.37e-58	179

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1253800	TR	HMG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa1253800	0.805658	1.200380e-49	-8.615850e-47
Msa0003890	Msa1253800	0.808534	2.954016e-50	-8.615850e-47
Msa0006070	Msa1253800	0.815369	9.578165e-52	-8.615850e-47
Msa0007440	Msa1253800	0.805563	1.256977e-49	-8.615850e-47
Msa0010490	Msa1253800	0.806777	6.976633e-50	-8.615850e-47
Msa0011960	Msa1253800	0.898051	7.747254e-77	-8.615850e-47
Msa0013050	Msa1253800	-0.815056	1.123850e-51	-8.615850e-47
Msa0020390	Msa1253800	0.829103	6.206281e-55	-8.615850e-47
Msa0020410	Msa1253800	0.801049	1.081729e-48	-8.615850e-47
Msa0023000	Msa1253800	0.812309	4.524127e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1253800	MtrunA17_Chr8g0370431	99.296	142	1	0	1	142	1	142	6.61e-98	277
Msa1253800	MtrunA17_Chr5g0407011	67.969	128	38	2	1	126	1	127	5.65e-54	166
Msa1253800	MtrunA17_Chr3g0143991	64.286	112	34	3	3	108	5	116	2.86e-37	124
Msa1253800	MtrunA17_Chr7g0242251	60.606	99	38	1	33	130	47	145	1.90e-30	107
Msa1253800	MtrunA17_Chr1g0212341	44.340	106	50	1	33	138	98	194	5.37e-24	92.4
Msa1253800	MtrunA17_Chr4g0052011	50.000	78	39	0	33	110	60	137	2.00e-22	86.7
Msa1253800	MtrunA17_Chr8g0387931	45.783	83	39	2	33	115	262	338	1.28e-12	63.9
Msa1253800	MtrunA17_Chr1g0155251	43.023	86	48	1	22	107	543	627	7.06e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1253800	AT1G20693.2	61.871	139	40	4	3	138	14	142	2.70e-44	142
Msa1253800	AT2G17560.2	56.618	136	53	2	5	138	7	138	1.18e-42	138
Msa1253800	AT2G17560.1	56.618	136	53	2	5	138	7	138	1.18e-42	138
Msa1253800	AT1G20693.3	61.600	125	37	3	3	126	14	128	2.35e-40	132
Msa1253800	AT1G20693.1	61.600	125	37	3	3	126	14	128	2.42e-40	132
Msa1253800	AT2G17560.3	56.296	135	50	3	5	137	7	134	2.77e-40	132
Msa1253800	AT1G20696.1	68.932	103	31	1	25	126	23	125	1.05e-39	130
Msa1253800	AT3G51880.2	64.423	104	33	2	28	130	44	144	2.84e-37	125
Msa1253800	AT3G51880.5	64.423	104	33	2	28	130	44	144	3.60e-37	125
Msa1253800	AT3G51880.1	64.423	104	33	2	28	130	44	144	3.60e-37	125

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Find 55 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGAAAGCACTTGG+AGG	0.557236	8_2:+51503937	None:intergenic
AAAATCCGAAGTCAATGATG+AGG	0.642367	8_2:-51503240	Msa1253800:CDS
AAAGCACTTGGAGGCCTCTT+TGG	0.273715	8_2:+51503946	None:intergenic
AAAGGAACGAGTTACTGAAT+CGG	0.576145	8_2:+51504225	None:intergenic
AACATTGACTTTAAGTACAC+AGG	0.550744	8_2:+51502899	None:intergenic
AACGAGGGAGGGGATAAGAA+GGG	0.647481	8_2:+51504312	None:intergenic
AAGATCCTAACAAGCCAAAG+AGG	0.610559	8_2:-51503960	Msa1253800:CDS
AAGCGCAAAGGTGCTGGAGC+TGG	0.461656	8_2:-51504009	Msa1253800:CDS
AATTAGGTCGGAAAAGCTTG+CGG	0.608945	8_2:-51503641	Msa1253800:intron
ACAAGCCTACAACAAGAAAC+TGG	0.447828	8_2:-51503399	Msa1253800:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAAACGCAAAGAAAAA+AGG	+	chr8_2:51502942-51502961	None:intergenic	30.0%
CAACCAAAACAGATTCAAAT+CGG	+	chr8_2:51503400-51503419	None:intergenic	30.0%
GAAGTTTAGGGAAAAATTGT+TGG	-	chr8_2:51504247-51504266	Msa1253800:five_prime_UTR	30.0%
ACGAAACAAAAATTGGAAGT+TGG	+	chr8_2:51504459-51504478	None:intergenic	30.0%
AGAGAAAACGCAAAGAAAAA+AGG	+	chr8_2:51502942-51502961	None:intergenic	30.0%
CAACCAAAACAGATTCAAAT+CGG	+	chr8_2:51503400-51503419	None:intergenic	30.0%
GAAGTTTAGGGAAAAATTGT+TGG	-	chr8_2:51504247-51504266	Msa1253800:five_prime_UTR	30.0%
ACGAAACAAAAATTGGAAGT+TGG	+	chr8_2:51504459-51504478	None:intergenic	30.0%
ACCAATCATATCACTTCACA+CGG	-	chr8_2:51502850-51502869	Msa1253800:three_prime_UTR	35.0%
AAAGGAACGAGTTACTGAAT+CGG	+	chr8_2:51503072-51503091	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	51502822	51504494	51502822	ID=Msa1253800;Name=Msa1253800
chr8_2	mRNA	51502822	51504494	51502822	ID=Msa1253800-mRNA-1;Parent=Msa1253800;Name=Msa1253800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=281\|1\|1\|1\|1\|1\|7\|281\|142
chr8_2	exon	51502822	51503135	51502822	ID=Msa1253800-mRNA-1:exon:15831;Parent=Msa1253800-mRNA-1
chr8_2	exon	51503229	51503297	51503229	ID=Msa1253800-mRNA-1:exon:15830;Parent=Msa1253800-mRNA-1
chr8_2	exon	51503400	51503480	51503400	ID=Msa1253800-mRNA-1:exon:15829;Parent=Msa1253800-mRNA-1
chr8_2	exon	51503613	51503657	51503613	ID=Msa1253800-mRNA-1:exon:15828;Parent=Msa1253800-mRNA-1
chr8_2	exon	51503777	51503834	51503777	ID=Msa1253800-mRNA-1:exon:15827;Parent=Msa1253800-mRNA-1
chr8_2	exon	51503934	51504035	51503934	ID=Msa1253800-mRNA-1:exon:15826;Parent=Msa1253800-mRNA-1
chr8_2	exon	51504173	51504494	51504173	ID=Msa1253800-mRNA-1:exon:15825;Parent=Msa1253800-mRNA-1
chr8_2	five_prime_UTR	51504214	51504494	51504214	ID=Msa1253800-mRNA-1:five_prime_utr;Parent=Msa1253800-mRNA-1
chr8_2	CDS	51504173	51504213	51504173	ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2	CDS	51503934	51504035	51503934	ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2	CDS	51503777	51503834	51503777	ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2	CDS	51503613	51503657	51503613	ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2	CDS	51503400	51503480	51503400	ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2	CDS	51503229	51503297	51503229	ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2	CDS	51503103	51503135	51503103	ID=Msa1253800-mRNA-1:cds;Parent=Msa1253800-mRNA-1
chr8_2	three_prime_UTR	51502822	51503102	51502822	ID=Msa1253800-mRNA-1:three_prime_utr;Parent=Msa1253800-mRNA-1

Gene Sequence

>Msa1253800

ATGCCGAAAGTTAAAGCTGATTCCAAACCCGCTGATAACCGCTTGAAGCGCAAAGGTGCTGGAGCTGGAAGGAAACAGACGAAGAAAGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCCGATTTTAGAGAACAGTATAAGAAAGATCATCCTAACAACAAATCCGTTGCCGCTGTCGGAAAAGCTTGCGGTGAAGCATGGAAATCGATGTCTGAAGAAGACAAGGCTCCTTATGCTGCCAGGGCATTGAAGAAGAAAGAAGAGTATGAAGTTGCTACACAAGCCTACAACAAGAAACTGGAGGGAAAAGACGAGGAAGATGGTTCTGACAAGTCAAAATCCGAAGTCAATGATGAGGATGAAGATGAGGAGGATGAGGATGATGATGAAGATGATGACTGA

Protein sequence

>Msa1253800

MPKVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDKAPYAARALKKKEEYEVATQAYNKKLEGKDEEDGSDKSKSEVNDEDEDEEDEDDDEDDD*