AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661210 MtrunA17_Chr1g0150071 98.611 360 3 2 1 360 1 358 0.0 730
Msa0661210 MtrunA17_Chr3g0136811 78.552 359 75 2 1 358 1 358 0.0 592
Msa0661210 MtrunA17_Chr4g0001761 69.101 356 103 2 1 356 1 349 0.0 524
Msa0661210 MtrunA17_Chr4g0007811 61.842 152 34 1 40 191 54 181 1.22e-60 194
Msa0661210 MtrunA17_Chr5g0407161 29.971 347 173 9 22 358 84 370 4.76e-42 150
Msa0661210 MtrunA17_Chr3g0138281 31.471 340 165 10 10 339 70 351 1.89e-40 146
Msa0661210 MtrunA17_Chr2g0299981 34.708 291 145 9 24 293 221 487 1.51e-36 139
Msa0661210 MtrunA17_Chr1g0194191 30.982 326 151 10 21 327 77 347 3.13e-35 132
Msa0661210 MtrunA17_Chr3g0136711 30.816 331 157 12 19 343 30 294 3.19e-35 130
Msa0661210 MtrunA17_Chr5g0435721 33.577 274 135 7 23 291 192 423 4.93e-35 134
Msa0661210 MtrunA17_Chr1g0150451 30.189 318 150 11 18 329 72 323 6.92e-34 128
Msa0661210 MtrunA17_Chr2g0293811 32.168 286 133 8 21 291 59 298 9.39e-34 128
Msa0661210 MtrunA17_Chr3g0126511 30.029 343 160 11 18 350 89 361 9.48e-34 128
Msa0661210 MtrunA17_Chr3g0144111 34.146 205 122 5 143 345 52 245 1.03e-33 125
Msa0661210 MtrunA17_Chr4g0065141 36.813 182 106 2 158 339 184 356 3.48e-33 127
Msa0661210 MtrunA17_Chr1g0212961 30.864 324 149 12 19 336 91 345 1.04e-31 122
Msa0661210 MtrunA17_Chr5g0396731 32.673 303 128 9 7 291 58 302 6.93e-31 120
Msa0661210 MtrunA17_Chr5g0430481 31.884 276 116 9 24 289 124 337 2.38e-30 119
Msa0661210 MtrunA17_Chr3g0112291 32.616 279 133 10 23 291 92 325 3.61e-30 119
Msa0661210 MtrunA17_Chr1g0171571 30.650 323 158 13 22 336 386 650 3.75e-30 121
Msa0661210 MtrunA17_Chr3g0105371 29.968 317 147 13 24 330 88 339 4.09e-30 117
Msa0661210 MtrunA17_Chr4g0070871 31.973 294 134 11 24 296 207 455 4.22e-30 120
Msa0661210 MtrunA17_Chr3g0127091 29.565 345 178 8 22 342 59 362 4.37e-30 118
Msa0661210 MtrunA17_Chr4g0050381 27.987 318 152 10 22 330 28 277 4.38e-30 116
Msa0661210 MtrunA17_Chr6g0483411 27.778 324 158 8 30 331 51 320 4.45e-30 117
Msa0661210 MtrunA17_Chr3g0105351 30.877 285 131 10 8 286 50 274 1.39e-28 113
Msa0661210 MtrunA17_Chr2g0279151 27.358 318 154 10 22 330 32 281 1.00e-26 107
Msa0661210 MtrunA17_Chr5g0426141 29.749 279 126 11 21 289 32 250 1.84e-25 103
Msa0661210 MtrunA17_Chr1g0150781 28.296 311 133 9 24 296 240 498 2.27e-25 107
Msa0661210 MtrunA17_Chr8g0389921 29.178 353 169 14 19 340 144 446 2.59e-25 106
Msa0661210 MtrunA17_Chr3g0115851 30.108 279 125 11 21 289 32 250 2.60e-25 103
Msa0661210 MtrunA17_Chr3g0135961 30.612 245 128 7 52 293 286 491 6.23e-24 102
Msa0661210 MtrunA17_Chr1g0158781 29.607 331 162 11 22 336 111 386 2.03e-22 97.4
Msa0661210 MtrunA17_Chr8g0360351 26.959 319 154 12 21 329 32 281 1.80e-21 92.8
Msa0661210 MtrunA17_Chr4g0051661 25.000 332 165 12 13 329 135 397 7.38e-21 92.8
Msa0661210 MtrunA17_Chr4g0068971 46.739 92 46 1 200 291 110 198 5.04e-20 88.6
Msa0661210 MtrunA17_Chr2g0317021 32.203 177 94 6 160 330 177 333 2.34e-18 85.1
Msa0661210 MtrunA17_Chr3g0089721 26.367 311 137 11 35 303 52 312 6.86e-18 84.0
Msa0661210 MtrunA17_Chr1g0151781 28.929 280 145 10 28 287 43 288 7.78e-18 83.6
Msa0661210 MtrunA17_Chr1g0213351 25.641 273 119 6 51 288 79 302 1.56e-17 83.2
Msa0661210 MtrunA17_Chr3g0089711 25.962 312 139 11 34 303 51 312 2.75e-17 82.0
Msa0661210 MtrunA17_Chr8g0371321 24.658 292 134 11 33 288 60 301 1.08e-16 80.9
Msa0661210 MtrunA17_Chr7g0249421 28.956 297 156 9 26 287 68 344 2.32e-16 80.1
Msa0661210 MtrunA17_Chr2g0294291 24.151 265 136 6 51 289 74 299 1.60e-15 77.0
Msa0661210 MtrunA17_Chr1g0211251 25.461 271 122 11 51 288 80 303 2.59e-15 76.6
Msa0661210 MtrunA17_Chr7g0256751 26.797 306 136 12 52 322 69 321 2.85e-15 76.6
Msa0661210 MtrunA17_Chr1g0181901 25.095 263 131 9 51 287 75 297 4.69e-15 75.9
Msa0661210 MtrunA17_Chr7g0263281 25.843 267 124 9 51 287 70 292 5.20e-15 75.5
Msa0661210 MtrunA17_Chr1g0207571 26.866 268 126 7 49 287 58 284 7.86e-15 75.1
Msa0661210 MtrunA17_Chr7g0272061 26.459 257 142 7 52 287 91 321 2.31e-14 73.6
Msa0661210 MtrunA17_Chr7g0250061 24.275 276 119 10 51 288 75 298 7.82e-14 72.0
Msa0661210 MtrunA17_Chr7g0256771 26.217 267 123 8 52 288 70 292 9.46e-14 71.2
Msa0661210 MtrunA17_Chr2g0324061 28.975 283 154 12 28 287 65 323 1.21e-13 72.0
Msa0661210 MtrunA17_Chr7g0221691 35.897 156 72 7 151 287 223 369 1.30e-13 71.6
Msa0661210 MtrunA17_Chr2g0295401 28.016 257 125 10 54 287 94 313 1.60e-13 70.9
Msa0661210 MtrunA17_Chr3g0133801 26.848 257 117 11 48 288 62 263 2.25e-13 70.9
Msa0661210 MtrunA17_Chr4g0067711 27.626 257 130 9 52 287 91 312 2.70e-13 70.5
Msa0661210 MtrunA17_Chr1g0153671 27.734 256 114 11 49 288 62 262 1.53e-12 68.6
Msa0661210 MtrunA17_Chr4g0022171 27.402 281 162 9 28 287 71 330 2.13e-12 68.2
Msa0661210 MtrunA17_Chr3g0089691 29.189 185 81 5 160 303 51 226 8.27e-12 65.5
Msa0661210 MtrunA17_Chr1g0192421 30.263 152 80 4 154 287 167 310 8.69e-12 65.9
Msa0661210 MtrunA17_Chr7g0243571 25.424 295 153 10 26 287 64 324 3.91e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661210 AT4G31860.1 72.113 355 97 1 1 353 1 355 0.0 546
Msa0661210 AT2G25070.1 73.746 339 89 0 1 339 1 339 0.0 540
Msa0661210 AT2G25070.2 73.746 339 89 0 1 339 1 339 0.0 540
Msa0661210 AT4G31860.3 75.601 291 71 0 1 291 1 291 4.31e-171 478
Msa0661210 AT4G31860.2 76.364 275 65 0 1 275 1 275 3.49e-161 452
Msa0661210 AT2G33700.1 31.230 317 152 7 23 329 84 344 5.70e-39 142
Msa0661210 AT3G51470.2 28.902 346 173 7 22 358 27 308 9.27e-39 140
Msa0661210 AT3G51470.1 28.902 346 173 7 22 358 71 352 1.53e-38 141
Msa0661210 AT2G25620.1 30.631 333 156 9 23 339 89 362 7.57e-38 140
Msa0661210 AT2G25620.2 30.631 333 156 9 23 339 89 362 7.57e-38 140
Msa0661210 AT5G10740.1 31.861 317 146 10 18 329 28 279 2.83e-37 137
Msa0661210 AT5G10740.2 31.861 317 146 10 18 329 28 279 2.83e-37 137
Msa0661210 AT5G24940.1 31.230 317 148 11 18 329 28 279 1.74e-36 137
Msa0661210 AT1G07430.1 34.615 286 123 10 23 291 120 358 6.38e-36 135
Msa0661210 AT2G29380.1 33.003 303 141 11 6 291 57 314 1.87e-34 130
Msa0661210 AT1G43900.1 33.121 314 139 10 22 330 122 369 2.25e-34 130
Msa0661210 AT4G27800.1 30.000 350 171 11 22 343 58 361 7.02e-34 129
Msa0661210 AT4G27800.2 31.148 305 150 8 22 302 58 326 1.25e-33 127
Msa0661210 AT4G31750.1 30.189 318 150 12 18 329 28 279 3.02e-33 125
Msa0661210 AT4G31750.3 30.189 318 150 12 18 329 28 279 3.02e-33 125
Msa0661210 AT4G27800.3 30.921 304 150 8 22 301 58 325 3.11e-33 126
Msa0661210 AT4G31750.2 30.189 318 150 12 18 329 28 279 3.63e-33 125
Msa0661210 AT5G53140.1 29.714 350 166 12 18 358 96 374 3.79e-33 128
Msa0661210 AT5G53140.2 29.714 350 166 12 18 358 96 374 3.79e-33 128
Msa0661210 AT1G48040.1 30.938 320 165 10 33 343 88 360 3.89e-33 127
Msa0661210 AT3G11410.1 33.452 281 145 9 19 291 100 346 7.82e-33 126
Msa0661210 AT1G67820.2 32.971 276 118 9 24 291 85 301 3.50e-31 122
Msa0661210 AT5G59220.1 33.113 302 135 12 3 291 99 346 5.65e-31 122
Msa0661210 AT1G67820.1 32.971 276 118 9 24 291 121 337 6.82e-31 122
Msa0661210 AT3G62260.1 29.210 291 136 6 21 291 75 315 1.68e-30 120
Msa0661210 AT3G62260.2 29.210 291 136 6 21 291 76 316 1.82e-30 120
Msa0661210 AT5G51760.2 29.722 360 169 11 15 334 71 386 2.16e-30 119
Msa0661210 AT5G51760.1 29.722 360 169 11 15 334 101 416 3.34e-30 119
Msa0661210 AT3G62260.3 30.797 276 121 6 36 291 1 226 3.96e-30 117
Msa0661210 AT5G57050.1 28.529 333 156 11 24 329 113 390 9.29e-30 119
Msa0661210 AT5G57050.2 28.529 333 156 11 24 329 73 350 1.19e-29 117
Msa0661210 AT1G07160.1 29.819 332 159 12 8 329 109 376 1.56e-29 117
Msa0661210 AT4G26080.1 30.508 295 139 8 24 300 129 375 1.20e-28 115
Msa0661210 AT1G72770.4 30.548 347 167 12 24 330 190 502 1.76e-28 116
Msa0661210 AT1G72770.1 30.548 347 167 12 24 330 190 502 1.76e-28 116
Msa0661210 AT1G72770.3 30.548 347 167 12 24 330 190 502 1.76e-28 116
Msa0661210 AT2G30020.1 31.529 314 149 12 24 329 140 395 1.99e-28 114
Msa0661210 AT1G17550.1 30.137 292 153 9 24 292 189 452 5.32e-28 114
Msa0661210 AT1G17550.2 30.137 292 153 9 24 292 189 452 5.32e-28 114
Msa0661210 AT2G40860.4 29.073 313 157 12 31 336 302 556 1.94e-27 113
Msa0661210 AT2G40860.1 29.073 313 157 12 31 336 400 654 2.45e-27 113
Msa0661210 AT2G40180.1 28.527 319 155 12 24 330 129 386 8.35e-27 110
Msa0661210 AT1G18030.1 29.538 325 151 12 30 331 81 350 1.06e-26 108
Msa0661210 AT3G17250.1 26.935 323 178 9 32 343 127 402 2.00e-25 106
Msa0661210 AT2G40860.2 29.057 265 132 8 31 288 400 615 1.93e-24 105
Msa0661210 AT1G78200.1 27.044 318 158 11 22 330 31 283 9.10e-24 99.8
Msa0661210 AT1G78200.3 27.044 318 158 11 22 330 31 283 9.10e-24 99.8
Msa0661210 AT1G78200.2 27.044 318 158 11 22 330 31 283 9.10e-24 99.8
Msa0661210 AT1G34750.2 27.703 296 144 12 5 289 14 250 3.14e-23 98.2
Msa0661210 AT1G34750.1 27.703 296 144 12 5 289 14 250 3.14e-23 98.2
Msa0661210 AT1G34750.3 27.703 296 144 12 5 289 14 250 3.14e-23 98.2
Msa0661210 AT1G18030.2 28.832 274 115 9 30 277 81 300 8.15e-23 97.4
Msa0661210 AT1G78200.5 26.403 303 150 9 36 330 1 238 4.63e-22 94.0
Msa0661210 AT1G78200.4 26.403 303 150 9 36 330 1 238 4.63e-22 94.0
Msa0661210 AT3G12620.2 26.950 282 136 6 34 287 65 304 8.29e-22 95.9
Msa0661210 AT3G12620.1 26.950 282 136 6 34 287 65 304 8.29e-22 95.9
Msa0661210 AT1G22280.1 26.730 318 156 13 22 330 32 281 1.62e-21 93.6
Msa0661210 AT5G59220.2 33.878 245 104 10 3 234 99 298 2.09e-21 93.6
Msa0661210 AT4G28400.3 32.377 244 98 9 52 288 45 228 2.65e-21 92.4
Msa0661210 AT4G28400.1 32.377 244 98 9 52 288 67 250 4.90e-21 92.0
Msa0661210 AT2G20630.1 26.316 285 136 8 52 330 63 279 6.62e-21 91.7
Msa0661210 AT3G15260.2 27.241 290 137 11 47 330 68 289 6.84e-21 91.7
Msa0661210 AT3G15260.1 27.241 290 137 11 47 330 68 289 6.84e-21 91.7
Msa0661210 AT2G20630.2 26.740 273 128 8 52 311 63 276 3.30e-20 90.1
Msa0661210 AT1G34750.4 28.014 282 133 12 5 275 14 236 6.65e-20 88.2
Msa0661210 AT1G22280.3 26.398 322 158 14 22 330 32 287 1.03e-19 88.6
Msa0661210 AT3G55050.1 25.651 269 122 6 51 287 83 305 3.73e-19 88.2
Msa0661210 AT3G55050.2 25.651 269 122 6 51 287 83 305 3.73e-19 88.2
Msa0661210 AT4G28400.2 31.967 244 98 10 52 287 67 250 1.41e-18 84.7
Msa0661210 AT2G40860.3 28.980 245 118 8 31 268 400 595 6.75e-18 85.5
Msa0661210 AT2G34740.1 23.509 285 142 11 52 329 119 334 1.30e-17 83.2
Msa0661210 AT5G02760.1 26.054 261 129 6 51 287 71 291 3.20e-17 82.4
Msa0661210 AT1G16220.1 28.421 285 166 9 26 287 67 336 4.41e-17 82.8
Msa0661210 AT4G03415.1 29.181 281 158 9 28 287 72 332 1.66e-16 80.9
Msa0661210 AT4G03415.3 29.181 281 158 9 28 287 72 332 1.66e-16 80.9
Msa0661210 AT4G03415.2 29.181 281 158 9 28 287 72 332 1.66e-16 80.9
Msa0661210 AT4G33920.1 26.909 275 120 8 48 287 57 285 3.40e-16 79.7
Msa0661210 AT4G38520.2 25.362 276 116 10 51 288 80 303 4.67e-16 79.3
Msa0661210 AT4G38520.1 25.362 276 116 10 51 288 80 303 4.67e-16 79.3
Msa0661210 AT3G02750.2 36.129 155 73 4 151 287 207 353 1.28e-15 78.2
Msa0661210 AT3G02750.1 36.129 155 73 4 151 287 207 353 1.28e-15 78.2
Msa0661210 AT1G79630.1 28.754 313 149 12 26 287 70 359 3.58e-15 77.0
Msa0661210 AT1G79630.8 28.754 313 149 12 26 287 66 355 3.86e-15 77.0
Msa0661210 AT2G34740.3 24.675 231 107 9 52 275 115 285 5.86e-15 75.1
Msa0661210 AT1G79630.6 34.194 155 76 4 151 287 103 249 7.04e-15 75.9
Msa0661210 AT1G79630.3 34.194 155 76 4 151 287 103 249 7.04e-15 75.9
Msa0661210 AT1G79630.4 34.194 155 76 4 151 287 103 249 7.04e-15 75.9
Msa0661210 AT1G79630.5 34.194 155 76 4 151 287 103 249 7.04e-15 75.9
Msa0661210 AT5G66080.1 24.354 271 125 11 51 288 81 304 1.09e-14 75.1
Msa0661210 AT1G79630.2 34.194 155 76 4 151 287 143 289 1.20e-14 75.1
Msa0661210 AT1G79630.7 34.194 155 76 4 151 287 143 289 1.20e-14 75.1
Msa0661210 AT5G36250.1 28.328 293 161 10 26 287 70 344 1.36e-14 75.1
Msa0661210 AT3G51370.1 22.378 286 148 7 33 288 60 301 1.46e-14 74.7
Msa0661210 AT3G51370.3 22.378 286 148 7 33 288 60 301 1.46e-14 74.7
Msa0661210 AT1G47380.1 23.446 354 190 15 9 342 17 309 3.84e-14 73.6
Msa0661210 AT3G16800.4 33.766 154 75 5 154 288 69 214 4.59e-14 71.6
Msa0661210 AT3G16800.6 33.766 154 75 5 154 288 69 214 4.59e-14 71.6
Msa0661210 AT3G16800.2 33.766 154 75 5 154 288 164 309 6.38e-14 72.4
Msa0661210 AT3G16800.1 33.766 154 75 5 154 288 164 309 6.38e-14 72.4
Msa0661210 AT3G16800.3 33.766 154 75 5 154 288 164 309 6.38e-14 72.4
Msa0661210 AT1G03590.1 28.223 287 150 11 28 287 65 322 1.73e-13 71.6
Msa0661210 AT5G27930.1 30.323 155 82 4 151 287 168 314 5.43e-13 69.7
Msa0661210 AT5G27930.2 30.323 155 82 4 151 287 168 314 5.43e-13 69.7
Msa0661210 AT3G05640.2 30.323 155 82 5 151 287 163 309 1.84e-12 68.2
Msa0661210 AT3G05640.1 30.323 155 82 5 151 287 163 309 1.84e-12 68.2
Msa0661210 AT3G05640.3 30.323 155 82 5 151 287 163 309 1.84e-12 68.2
Msa0661210 AT3G63340.6 28.916 249 117 10 159 355 232 472 2.18e-12 68.9
Msa0661210 AT3G63340.3 28.916 249 117 10 159 355 232 472 2.18e-12 68.9
Msa0661210 AT3G63340.10 28.916 249 117 10 159 355 232 472 2.18e-12 68.9
Msa0661210 AT3G63340.4 28.916 249 117 10 159 355 232 472 2.18e-12 68.9
Msa0661210 AT3G63340.8 28.916 249 117 10 159 355 232 472 2.21e-12 68.9
Msa0661210 AT3G63340.11 28.916 249 117 10 159 355 232 472 2.60e-12 68.6
Msa0661210 AT3G63340.7 28.916 249 117 10 159 355 232 472 2.62e-12 68.9
Msa0661210 AT3G63340.5 28.916 249 117 10 159 355 232 472 2.64e-12 68.6
Msa0661210 AT3G63340.1 28.916 249 117 10 159 355 232 472 2.64e-12 68.6
Msa0661210 AT3G63340.12 28.916 249 117 10 159 355 232 472 3.57e-12 67.8
Msa0661210 AT4G32950.1 30.723 166 89 5 155 302 134 291 4.96e-12 66.6
Msa0661210 AT4G08260.1 30.899 178 98 7 155 329 56 211 1.10e-11 63.9
Msa0661210 AT5G01700.1 32.911 158 81 5 147 287 99 248 1.23e-11 65.5
Msa0661210 AT5G01700.2 32.911 158 81 5 147 287 148 297 2.33e-11 65.1
Msa0661210 AT4G33920.3 29.091 165 76 5 158 287 14 172 2.37e-11 63.9
Msa0661210 AT3G63340.2 31.609 174 102 7 191 355 340 505 2.95e-11 65.5
Msa0661210 AT4G33920.2 29.091 165 76 5 158 287 44 202 3.48e-11 63.9
Msa0661210 AT5G66080.2 25.843 178 92 7 141 288 33 200 6.85e-11 62.8
Msa0661210 AT3G51370.2 25.786 159 84 4 160 288 62 216 8.66e-11 62.8

Find 83 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTATTATCATTGCTTC+TGG 0.154103 4_3:+72416650 None:intergenic
CTACCAATTGTTGGCTTGAT+AGG 0.213993 4_3:+72415248 None:intergenic
CCGGTGTTTGGCGCCATCTT+TGG 0.215436 4_3:-72414264 Msa0661210:CDS
GTCTTAGGTGATAAGGTAAA+AGG 0.236931 4_3:-72416708 Msa0661210:CDS
ATTCATGCAGGACGAATTAA+TGG 0.284463 4_3:-72416009 Msa0661210:CDS
GAAAATGACAATCTTAGATA+TGG 0.340077 4_3:-72417704 Msa0661210:CDS
TTAAATCTTGCAAGAGCTAT+AGG 0.342994 4_3:-72415982 Msa0661210:intron
TCCCAGAAGCAATGATAATA+AGG 0.343732 4_3:-72416652 Msa0661210:CDS
TCCTTATTATCATTGCTTCT+GGG 0.356241 4_3:+72416651 None:intergenic
TCCTTCTCAATCACAAGCTC+AGG 0.383236 4_3:+72416057 None:intergenic
AGAGAAAGAGGGAGAGTAAG+AGG 0.394444 4_3:+72418479 None:intergenic
GACTTTGATGGACCAACTTC+AGG 0.394479 4_3:-72416477 Msa0661210:CDS
CGATAACATGACAATGATAT+TGG 0.399156 4_3:-72414225 Msa0661210:CDS
TGCCAAGCACCTTCACCAAC+AGG 0.407215 4_3:-72417008 Msa0661210:CDS
TGGAGGGAATTAGCAGTCTT+AGG 0.418225 4_3:-72416723 Msa0661210:CDS
AAACTTACAATGTTTATGTC+TGG 0.418978 4_3:+72415605 None:intergenic
TAGTTGGTACAGAGAGAAAG+AGG 0.419796 4_3:+72418467 None:intergenic
CTTCAACTGTTCTCCAATGT+TGG 0.431839 4_3:+72414119 None:intergenic
GTACAAAATCTACCAATTGT+TGG 0.434248 4_3:+72415239 None:intergenic
TACAATGTTTATGTCTGGAT+TGG 0.435988 4_3:+72415610 None:intergenic
GGGCCTCATTCAGACTTTGA+TGG 0.437338 4_3:-72416489 Msa0661210:CDS
CAAAGGCCCAATCATCACTT+TGG 0.437500 4_3:+72416628 None:intergenic
CCATCTTTGGCTGTTGGTGA+TGG 0.439337 4_3:-72414251 Msa0661210:CDS
GATAAGGTAAAAGGGTTCAA+TGG 0.446026 4_3:-72416699 Msa0661210:CDS
TAAGGACCAAAGTGATGATT+GGG 0.447461 4_3:-72416634 Msa0661210:CDS
ATTCACGCTGCGTAATATCT+AGG 0.452068 4_3:-72416395 Msa0661210:CDS
ATAAGGACCAAAGTGATGAT+TGG 0.459298 4_3:-72416635 Msa0661210:CDS
AATGTTTATGTCTGGATTGG+CGG 0.464448 4_3:+72415613 None:intergenic
CGTAATATCTAGGAATGGTC+AGG 0.468140 4_3:-72416385 Msa0661210:intron
TTTAATTCAGATATAGCAAT+GGG 0.469490 4_3:-72417773 Msa0661210:intron
TTGCCTATCAAGCCAACAAT+TGG 0.471715 4_3:-72415251 Msa0661210:CDS
TGATGATTGGGCCTTTGAAA+AGG 0.472066 4_3:-72416622 Msa0661210:intron
CACCTGTTGGTGAAGGTGCT+TGG 0.474380 4_3:+72417006 None:intergenic
TGTACGTCAAGAACTTCTCT+TGG 0.476519 4_3:-72415221 Msa0661210:intron
GGGTTCAATGGAATGATTGA+AGG 0.480510 4_3:-72416687 Msa0661210:CDS
ATTAGCAGTCTTAGGTGATA+AGG 0.484258 4_3:-72416715 Msa0661210:CDS
AGTTGGTACAGAGAGAAAGA+GGG 0.485887 4_3:+72418468 None:intergenic
GAATGATTGAAGGATTGATT+CGG 0.488358 4_3:-72416677 Msa0661210:CDS
GAATACATAGCTGGAGATGT+TGG 0.491063 4_3:-72416971 Msa0661210:CDS
TTCATGCAGGACGAATTAAT+GGG 0.491284 4_3:-72416008 Msa0661210:CDS
TGATAGCTTGTGATGGCATA+TGG 0.507088 4_3:-72415357 Msa0661210:intron
AAGAGTGCTAGACCGGTGTT+TGG 0.509475 4_3:-72414276 Msa0661210:CDS
TACATGTATGCGTTTAGTGT+TGG 0.510371 4_3:+72414078 None:intergenic
AAGGAAAGAATCTATAAAGC+TGG 0.515169 4_3:-72416039 Msa0661210:CDS
GAAGATGATTGTTCTTGAGC+CGG 0.519349 4_3:+72414167 None:intergenic
TTCGGTGTATATGATGGTCA+TGG 0.519478 4_3:-72417144 Msa0661210:CDS
TGAGATGATGCGTGGTCAAA+GGG 0.520080 4_3:-72416748 Msa0661210:CDS
TGCATCATCTGAACCAACAT+TGG 0.520445 4_3:-72414132 Msa0661210:CDS
TCTTAGGTGATAAGGTAAAA+GGG 0.520980 4_3:-72416707 Msa0661210:CDS
TTGGCGCCATCTTTGGCTGT+TGG 0.522338 4_3:-72414257 Msa0661210:CDS
GCAAGGTTGGCGTGCAACAA+TGG 0.523310 4_3:-72417669 Msa0661210:CDS
CTTCACTCTTGAGCACCTGT+TGG 0.527508 4_3:+72416993 None:intergenic
ACAGGAAACTAAACTTTCTG+AGG 0.527738 4_3:-72414306 Msa0661210:intron
GCTTAGAAAATGCATCTAGT+TGG 0.529060 4_3:-72414034 Msa0661210:three_prime_UTR
ACTGCAGACAAGTGCACCGC+CGG 0.530448 4_3:-72414186 Msa0661210:CDS
CCAAAGATGGCGCCAAACAC+CGG 0.530584 4_3:+72414264 None:intergenic
GGCGGTGCACTTGTCTGCAG+TGG 0.535694 4_3:+72414188 None:intergenic
CAAGCAGTGCTTCCTGAAGT+TGG 0.536448 4_3:+72416465 None:intergenic
GCGTGGTCAAAGGGGATGGA+GGG 0.539500 4_3:-72416739 Msa0661210:CDS
AAGAGTGAAGAATACATAGC+TGG 0.546958 4_3:-72416980 Msa0661210:CDS
CCATCACCAACAGCCAAAGA+TGG 0.553018 4_3:+72414251 None:intergenic
TTTGTGAAAGAGTGCTAGAC+CGG 0.555494 4_3:-72414283 Msa0661210:CDS
TCTTGAGCACCTGTTGGTGA+AGG 0.555714 4_3:+72416999 None:intergenic
TAAACTCATCTTCGTCATGA+AGG 0.558190 4_3:+72415383 None:intergenic
TGATGCGTGGTCAAAGGGGA+TGG 0.565060 4_3:-72416743 Msa0661210:CDS
TGACTAGAAATACCGACACT+TGG 0.567067 4_3:+72413913 None:intergenic
AGTGTGAAGAAAGAGATAGT+TGG 0.580457 4_3:+72418451 None:intergenic
GTTTATCATCTATGCAAGGT+TGG 0.584230 4_3:-72417682 Msa0661210:CDS
TTAATATTCTGCAGGTGACG+TGG 0.584418 4_3:-72415681 Msa0661210:intron
TGCGTGGTCAAAGGGGATGG+AGG 0.586051 4_3:-72416740 Msa0661210:CDS
GCATGCGGCGCATCTTGATG+TGG 0.597024 4_3:-72417184 Msa0661210:CDS
ATGAGATGATGCGTGGTCAA+AGG 0.604481 4_3:-72416749 Msa0661210:CDS
GGTCCATCAAAGTCTGAATG+AGG 0.607139 4_3:+72416486 None:intergenic
CGCTGCGTAATATCTAGGAA+TGG 0.609929 4_3:-72416390 Msa0661210:CDS
CAATAAGCGGTTCCAAGTGT+CGG 0.614947 4_3:-72413925 Msa0661210:three_prime_UTR
ACCTGAGCTTGTGATTGAGA+AGG 0.615530 4_3:-72416058 Msa0661210:CDS
TATGGTTTATCATCTATGCA+AGG 0.620361 4_3:-72417686 Msa0661210:CDS
GAAAGAATCTATAAAGCTGG+TGG 0.623293 4_3:-72416036 Msa0661210:CDS
TTTATAGTGATAGCTTGTGA+TGG 0.644189 4_3:-72415364 Msa0661210:CDS
GATGATTGTTCTTGAGCCGG+CGG 0.663671 4_3:+72414170 None:intergenic
GGTGTATATGATGGTCATGG+AGG 0.706196 4_3:-72417141 Msa0661210:intron
GAGATGATGCGTGGTCAAAG+GGG 0.732571 4_3:-72416747 Msa0661210:CDS
AGAATGGATGAGATGATGCG+TGG 0.759110 4_3:-72416756 Msa0661210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAATAACATAAC+AGG + chr4_3:72416062-72416081 None:intergenic 10.0%
!! GAATATTAAAACATATTAAA+TGG + chr4_3:72416652-72416671 None:intergenic 10.0%
!! TTATTTGAACTTATATAATT+TGG - chr4_3:72417261-72417280 Msa0661210:intron 10.0%
!!! GATTTTTTTATTACATAGTT+TGG - chr4_3:72414494-72414513 Msa0661210:intron 15.0%
!!! ATCTTTTTATATTGTAAACA+GGG - chr4_3:72415834-72415853 Msa0661210:intron 15.0%
!!! TTAGCATTAATTTGTATAAT+TGG - chr4_3:72416016-72416035 Msa0661210:CDS 15.0%
!! AAAAGAATTAAACAAATTCT+AGG + chr4_3:72416161-72416180 None:intergenic 15.0%
!!! TTTAATTCTTTTTCTTATGT+AGG - chr4_3:72416169-72416188 Msa0661210:intron 15.0%
!! AGCATACAAAATAAAATAAT+AGG + chr4_3:72416514-72416533 None:intergenic 15.0%
!!! TTATTTTGTATGCTTTATTT+TGG - chr4_3:72416520-72416539 Msa0661210:intron 15.0%
!! AAATGACATTTATTAAAATG+GGG + chr4_3:72417042-72417061 None:intergenic 15.0%
!! GAAATGACATTTATTAAAAT+GGG + chr4_3:72417043-72417062 None:intergenic 15.0%
!! AGAAATGACATTTATTAAAA+TGG + chr4_3:72417044-72417063 None:intergenic 15.0%
!! CAAATTTAATAATGACAATT+TGG + chr4_3:72417666-72417685 None:intergenic 15.0%
!! CAAATTGTCATTATTAAATT+TGG - chr4_3:72417664-72417683 Msa0661210:CDS 15.0%
!! TTAAAAAAATCAAATTGTGA+AGG - chr4_3:72417778-72417797 Msa0661210:intron 15.0%
!!! TTTTAATTCAGATATAGCAA+TGG - chr4_3:72414570-72414589 Msa0661210:intron 20.0%
!! TTTAATTCAGATATAGCAAT+GGG - chr4_3:72414571-72414590 Msa0661210:intron 20.0%
!!! AGAGTTTTTGAAAAAATTCA+AGG + chr4_3:72414867-72414886 None:intergenic 20.0%
!!! AAAGTTAAAAGCATAATTGA+CGG + chr4_3:72415045-72415064 None:intergenic 20.0%
!!! ATGCTTTTAACTTTGTTTAT+TGG - chr4_3:72415051-72415070 Msa0661210:intron 20.0%
!! GTAAAATTTGATTATTTGGA+AGG - chr4_3:72415225-72415244 Msa0661210:CDS 20.0%
!!! TGAGTTATGAACTATTATTT+TGG - chr4_3:72415556-72415575 Msa0661210:intron 20.0%
!!! TATACTTAGTTTCTTTTTGT+TGG - chr4_3:72415797-72415816 Msa0661210:intron 20.0%
!!! GATCTTTTTATATTGTAAAC+AGG - chr4_3:72415833-72415852 Msa0661210:intron 20.0%
!!! TCTTTTTATATTGTAAACAG+GGG - chr4_3:72415835-72415854 Msa0661210:intron 20.0%
!!! AATATGTTTTAATATTCTGC+AGG - chr4_3:72416655-72416674 Msa0661210:CDS 20.0%
!! ATATTGTCTATTGAGAAATA+GGG + chr4_3:72416786-72416805 None:intergenic 20.0%
!!! TGTTTTTGGAATTATATCAT+AGG - chr4_3:72416934-72416953 Msa0661210:intron 20.0%
!! AAATTGAACAAAACTGTTAA+TGG - chr4_3:72417477-72417496 Msa0661210:intron 20.0%
!! TATAATAGTATTTGTAGTTC+TGG + chr4_3:72417563-72417582 None:intergenic 20.0%
!!! CAATTTGATTTTTTTAAGTG+TGG + chr4_3:72417775-72417794 None:intergenic 20.0%
!! ACTACATTGAAATAATAACT+TGG + chr4_3:72417969-72417988 None:intergenic 20.0%
!! GTTATTATTTCAATGTAGTT+TGG - chr4_3:72417970-72417989 Msa0661210:intron 20.0%
!!! TTTTTGAAAAAGTAAACTAG+GGG + chr4_3:72418378-72418397 None:intergenic 20.0%
!!! GTTTTTGAAAAAGTAAACTA+GGG + chr4_3:72418379-72418398 None:intergenic 20.0%
!!! AGTTTTTGAAAAAGTAAACT+AGG + chr4_3:72418380-72418399 None:intergenic 20.0%
! ATTCATAATCATGAAGAACA+AGG + chr4_3:72414121-72414140 None:intergenic 25.0%
!! TGTTGTTTAATTTCCATTGT+TGG - chr4_3:72414147-72414166 Msa0661210:CDS 25.0%
!!! TTCCATGTTTTTGTTGTATA+TGG - chr4_3:72414326-72414345 Msa0661210:intron 25.0%
! AACCATATACAACAAAAACA+TGG + chr4_3:72414331-72414350 None:intergenic 25.0%
!!! ATGTTTTTGTTGTATATGGT+TGG - chr4_3:72414330-72414349 Msa0661210:intron 25.0%
! TTGTTGAGAAAGAAACAAAA+AGG - chr4_3:72414398-72414417 Msa0661210:intron 25.0%
! CCAAATCAATTAACAAAAAG+AGG + chr4_3:72414448-72414467 None:intergenic 25.0%
!! CCTCTTTTTGTTAATTGATT+TGG - chr4_3:72414445-72414464 Msa0661210:intron 25.0%
! TAGATTTGCAAAAGTTGTAT+TGG - chr4_3:72414472-72414491 Msa0661210:intron 25.0%
!! TCTGAAAACTTTTCAGTTTT+AGG + chr4_3:72414613-72414632 None:intergenic 25.0%
! GAAAATGACAATCTTAGATA+TGG - chr4_3:72414640-72414659 Msa0661210:intron 25.0%
!! AGTTTTTGTCAAAATCATGA+TGG - chr4_3:72414977-72414996 Msa0661210:intron 25.0%
! GGAGGTAAAATTTGATTATT+TGG - chr4_3:72415221-72415240 Msa0661210:intron 25.0%
! AATTTGATTATTTGGAAGGA+TGG - chr4_3:72415229-72415248 Msa0661210:CDS 25.0%
!! TATGTTGAACACAAATTTTC+AGG - chr4_3:72415292-72415311 Msa0661210:intron 25.0%
! TAAAATCAAAACTTCACAAC+AGG + chr4_3:72415449-72415468 None:intergenic 25.0%
! GAAAAATTTATCACAAGTTC+AGG - chr4_3:72415503-72415522 Msa0661210:intron 25.0%
!!! CTTTTTTGTTACTTTCATAG+TGG + chr4_3:72415536-72415555 None:intergenic 25.0%
!!! ATTTTGGTTATTATGCAGAA+TGG - chr4_3:72415572-72415591 Msa0661210:intron 25.0%
!!! GACATAATTTTTTCTGACTA+TGG - chr4_3:72416222-72416241 Msa0661210:intron 25.0%
! CTAAGGTTAAAACTGAATAA+AGG + chr4_3:72416424-72416443 None:intergenic 25.0%
!!! AGGAAGTTTCCTTTTATTTT+CGG + chr4_3:72416494-72416513 None:intergenic 25.0%
!!! TTTTGTATGCTTTATTTTGG+AGG - chr4_3:72416523-72416542 Msa0661210:intron 25.0%
! AAACTTACAATGTTTATGTC+TGG + chr4_3:72416742-72416761 None:intergenic 25.0%
! CATATTGTCTATTGAGAAAT+AGG + chr4_3:72416787-72416806 None:intergenic 25.0%
!! CTATTTCTCAATAGACAATA+TGG - chr4_3:72416785-72416804 Msa0661210:intron 25.0%
! TTTATTAAAATGGGGAATTG+TGG + chr4_3:72417034-72417053 None:intergenic 25.0%
!! AATTCTTTTTCTTACGTTTC+AGG - chr4_3:72417068-72417087 Msa0661210:intron 25.0%
!! ATTCTTTTTCTTACGTTTCA+GGG - chr4_3:72417069-72417088 Msa0661210:intron 25.0%
!! AGTAATGATTCTTTTCAGTT+CGG + chr4_3:72417442-72417461 None:intergenic 25.0%
! AGGTTAACAAATAAACAGTT+CGG + chr4_3:72417631-72417650 None:intergenic 25.0%
!!! TTTTTAAGTGTGGTTTGATT+CGG + chr4_3:72417765-72417784 None:intergenic 25.0%
! TACATGTATATTGTATAGTG+TGG - chr4_3:72418281-72418300 Msa0661210:intron 25.0%
GAATGAAGAAATGAATGATG+GGG + chr4_3:72413950-72413969 None:intergenic 30.0%
CGAATGAAGAAATGAATGAT+GGG + chr4_3:72413951-72413970 None:intergenic 30.0%
ACGAATGAAGAAATGAATGA+TGG + chr4_3:72413952-72413971 None:intergenic 30.0%
TATGCATTCTCACATGAAAA+TGG + chr4_3:72414040-72414059 None:intergenic 30.0%
GATAAAGATAGAACCAACAA+TGG + chr4_3:72414163-72414182 None:intergenic 30.0%
! TTGTTTCTTTCTCAACAACA+TGG + chr4_3:72414396-72414415 None:intergenic 30.0%
! ACTGAAAAGTTTTCAGAAGA+TGG - chr4_3:72414616-72414635 Msa0661210:intron 30.0%
TATGGTTTATCATCTATGCA+AGG - chr4_3:72414658-72414677 Msa0661210:intron 30.0%
ATTGTAGAAGCAAGTATATG+TGG - chr4_3:72414811-72414830 Msa0661210:intron 30.0%
! AGTGTGATTGAATTGTGTTT+TGG - chr4_3:72415003-72415022 Msa0661210:intron 30.0%
! GTGTGATTGAATTGTGTTTT+GGG - chr4_3:72415004-72415023 Msa0661210:intron 30.0%
! TGTGATTGAATTGTGTTTTG+GGG - chr4_3:72415005-72415024 Msa0661210:intron 30.0%
!!! TTTTTTCTTTTGCTAGCATG+CGG - chr4_3:72415145-72415164 Msa0661210:intron 30.0%
!!! TGAACACAAATTTTCAGGTA+AGG - chr4_3:72415297-72415316 Msa0661210:intron 30.0%
TCTTAGGTGATAAGGTAAAA+GGG - chr4_3:72415637-72415656 Msa0661210:CDS 30.0%
GAATGATTGAAGGATTGATT+CGG - chr4_3:72415667-72415686 Msa0661210:CDS 30.0%
TCCTTATTATCATTGCTTCT+GGG + chr4_3:72415696-72415715 None:intergenic 30.0%
AAGGAAAGAATCTATAAAGC+TGG - chr4_3:72416305-72416324 Msa0661210:intron 30.0%
TTAAATCTTGCAAGAGCTAT+AGG - chr4_3:72416362-72416381 Msa0661210:intron 30.0%
ACTAAGATTATCATAGCTCA+AGG + chr4_3:72416468-72416487 None:intergenic 30.0%
CTTAGTGTACCGAAAATAAA+AGG - chr4_3:72416482-72416501 Msa0661210:CDS 30.0%
TTGAAGAAGATGCACTTATA+TGG - chr4_3:72416614-72416633 Msa0661210:intron 30.0%
TACAATGTTTATGTCTGGAT+TGG + chr4_3:72416737-72416756 None:intergenic 30.0%
AAATGCTTAGTCAAGAGTTT+CGG - chr4_3:72416822-72416841 Msa0661210:intron 30.0%
!!! CTGAATGAGAGTTTTGTTTT+TGG - chr4_3:72416920-72416939 Msa0661210:intron 30.0%
! TTTATAGTGATAGCTTGTGA+TGG - chr4_3:72416980-72416999 Msa0661210:CDS 30.0%
GTACAAAATCTACCAATTGT+TGG + chr4_3:72417108-72417127 None:intergenic 30.0%
TTCATATACAAGACAGTACT+AGG + chr4_3:72417238-72417257 None:intergenic 30.0%
TGAATAACAAGGACTGTTTA+TGG - chr4_3:72417392-72417411 Msa0661210:intron 30.0%
! TTAAATTTGGCTCAAATTGC+TGG - chr4_3:72417677-72417696 Msa0661210:CDS 30.0%
! GTTCACAGTTCTTTTCTTTT+TGG - chr4_3:72417857-72417876 Msa0661210:intron 30.0%
TTCGGTTTAACAGTTCAATT+TGG - chr4_3:72417885-72417904 Msa0661210:intron 30.0%
ATGCTTAGGGAAAAAAAACT+TGG + chr4_3:72417940-72417959 None:intergenic 30.0%
AACTTGGATCATTATGCTTA+GGG + chr4_3:72417953-72417972 None:intergenic 30.0%
TAACTTGGATCATTATGCTT+AGG + chr4_3:72417954-72417973 None:intergenic 30.0%
CGATAACATGACAATGATAT+TGG - chr4_3:72418119-72418138 Msa0661210:intron 30.0%
! TAGATGCATTTTCTAAGCAT+AGG + chr4_3:72418308-72418327 None:intergenic 30.0%
! TGTTTTGCTTGTTCAATAAG+CGG - chr4_3:72418406-72418425 Msa0661210:intron 30.0%
! AACAATATGCAAGCATTTTG+AGG - chr4_3:72418468-72418487 Msa0661210:five_prime_UTR 30.0%
AGTGTGAAGAAAGAGATAGT+TGG + chr4_3:72413896-72413915 None:intergenic 35.0%
!!! TTCACACTTTTTCTATGTCC+TGG - chr4_3:72413908-72413927 Msa0661210:three_prime_UTR 35.0%
TTGCTACTCATATTCTCATC+CGG - chr4_3:72414090-72414109 Msa0661210:three_prime_UTR 35.0%
GTTTATCATCTATGCAAGGT+TGG - chr4_3:72414662-72414681 Msa0661210:intron 35.0%
TCAATTGAAGTTCTTGTGTG+TGG - chr4_3:72414714-72414733 Msa0661210:intron 35.0%
!! TTTTAAGTACTTGTCTGCAG+TGG - chr4_3:72414898-72414917 Msa0661210:intron 35.0%
AAGCTTCAACAGAATCATGA+TGG + chr4_3:72414949-72414968 None:intergenic 35.0%
!! GATTCATCCACTTCGTTTTT+CGG - chr4_3:72415182-72415201 Msa0661210:intron 35.0%
ATATACACCGAAAAACGAAG+TGG + chr4_3:72415192-72415211 None:intergenic 35.0%
!! TCGTTTTTCGGTGTATATGA+TGG - chr4_3:72415194-72415213 Msa0661210:intron 35.0%
!!! ACACAAATTTTCAGGTAAGG+CGG - chr4_3:72415300-72415319 Msa0661210:intron 35.0%
AAGAGTGAAGAATACATAGC+TGG - chr4_3:72415364-72415383 Msa0661210:CDS 35.0%
!!! CTCTTACGAAAGCATTTTTC+AGG - chr4_3:72415401-72415420 Msa0661210:intron 35.0%
ATTAGCAGTCTTAGGTGATA+AGG - chr4_3:72415629-72415648 Msa0661210:CDS 35.0%
GTCTTAGGTGATAAGGTAAA+AGG - chr4_3:72415636-72415655 Msa0661210:CDS 35.0%
GATAAGGTAAAAGGGTTCAA+TGG - chr4_3:72415645-72415664 Msa0661210:CDS 35.0%
TCCCAGAAGCAATGATAATA+AGG - chr4_3:72415692-72415711 Msa0661210:intron 35.0%
GTCCTTATTATCATTGCTTC+TGG + chr4_3:72415697-72415716 None:intergenic 35.0%
ATAAGGACCAAAGTGATGAT+TGG - chr4_3:72415709-72415728 Msa0661210:intron 35.0%
TAAGGACCAAAGTGATGATT+GGG - chr4_3:72415710-72415729 Msa0661210:intron 35.0%
! GATCATTCCTACCTTTTCAA+AGG + chr4_3:72415736-72415755 None:intergenic 35.0%
TCTTATGTAGGCTATGTGTT+AGG - chr4_3:72416181-72416200 Msa0661210:intron 35.0%
! ACTATGGATTTTTGTTCTGC+AGG - chr4_3:72416238-72416257 Msa0661210:intron 35.0%
GAAAGAATCTATAAAGCTGG+TGG - chr4_3:72416308-72416327 Msa0661210:intron 35.0%
ATTCATGCAGGACGAATTAA+TGG - chr4_3:72416335-72416354 Msa0661210:intron 35.0%
TTCATGCAGGACGAATTAAT+GGG - chr4_3:72416336-72416355 Msa0661210:intron 35.0%
GTACTTGTATGCATGTTGTT+TGG - chr4_3:72416557-72416576 Msa0661210:intron 35.0%
! AATGTTTATGTCTGGATTGG+CGG + chr4_3:72416734-72416753 None:intergenic 35.0%
TAAACTCATCTTCGTCATGA+AGG + chr4_3:72416964-72416983 None:intergenic 35.0%
TGTGCGTTACTTGAATAACA+AGG - chr4_3:72417381-72417400 Msa0661210:intron 35.0%
AACAAGGACTGTTTATGGTT+TGG - chr4_3:72417397-72417416 Msa0661210:intron 35.0%
! TGATTCTTTTCAGTTCGGTT+TGG + chr4_3:72417437-72417456 None:intergenic 35.0%
GGTATAAAGGTTCCAATCAT+CGG - chr4_3:72417518-72417537 Msa0661210:intron 35.0%
TCGTTCGAAAATGTACAGTT+TGG + chr4_3:72417591-72417610 None:intergenic 35.0%
CAATTTGGTACACAAAGCAA+AGG + chr4_3:72417651-72417670 None:intergenic 35.0%
!! CAGTTCTTTTCTTTTTGGTG+TGG - chr4_3:72417862-72417881 Msa0661210:intron 35.0%
!! CTTTTCTTTTTGGTGTGGTT+CGG - chr4_3:72417867-72417886 Msa0661210:intron 35.0%
!! CGATACACTTTTTATCTCAC+AGG - chr4_3:72418020-72418039 Msa0661210:intron 35.0%
ACAGGAAACTAAACTTTCTG+AGG - chr4_3:72418038-72418057 Msa0661210:intron 35.0%
TACATGTATGCGTTTAGTGT+TGG + chr4_3:72418269-72418288 None:intergenic 35.0%
GCTTAGAAAATGCATCTAGT+TGG - chr4_3:72418310-72418329 Msa0661210:intron 35.0%
! AGTTGGTACAGAGAGAAAGA+GGG + chr4_3:72413879-72413898 None:intergenic 40.0%
! TAGTTGGTACAGAGAGAAAG+AGG + chr4_3:72413880-72413899 None:intergenic 40.0%
! TGAAGAAATGAATGATGGGG+AGG + chr4_3:72413947-72413966 None:intergenic 40.0%
TGCTACTCATATTCTCATCC+GGG - chr4_3:72414091-72414110 Msa0661210:three_prime_UTR 40.0%
TTGAAGTTCTTGTGTGTGGA+TGG - chr4_3:72414718-72414737 Msa0661210:intron 40.0%
!! GTGTGTGGATGGATTTTTCT+TGG - chr4_3:72414729-72414748 Msa0661210:intron 40.0%
! TTCGGTGTATATGATGGTCA+TGG - chr4_3:72415200-72415219 Msa0661210:intron 40.0%
GAATACATAGCTGGAGATGT+TGG - chr4_3:72415373-72415392 Msa0661210:CDS 40.0%
GGGTTCAATGGAATGATTGA+AGG - chr4_3:72415657-72415676 Msa0661210:CDS 40.0%
! TGATGATTGGGCCTTTGAAA+AGG - chr4_3:72415722-72415741 Msa0661210:intron 40.0%
CAGCATTCGCAACAAAAAGT+AGG + chr4_3:72415926-72415945 None:intergenic 40.0%
!!! CTACTTTTTGTTGCGAATGC+TGG - chr4_3:72415924-72415943 Msa0661210:intron 40.0%
ATTCACGCTGCGTAATATCT+AGG - chr4_3:72415949-72415968 Msa0661210:intron 40.0%
CGTAATATCTAGGAATGGTC+AGG - chr4_3:72415959-72415978 Msa0661210:intron 40.0%
ATGTAGGCTATGTGTTAGGT+AGG - chr4_3:72416185-72416204 Msa0661210:intron 40.0%
CATAGTACATACCTACCTAC+CGG - chr4_3:72416387-72416406 Msa0661210:CDS 40.0%
AATAAAGGAAGCTCACTTGC+CGG + chr4_3:72416409-72416428 None:intergenic 40.0%
!!! TGCTTTATTTTGGAGGCAAG+AGG - chr4_3:72416530-72416549 Msa0661210:intron 40.0%
!!! TTTATTTTGGAGGCAAGAGG+AGG - chr4_3:72416533-72416552 Msa0661210:intron 40.0%
TTAATATTCTGCAGGTGACG+TGG - chr4_3:72416663-72416682 Msa0661210:CDS 40.0%
! TAGGGTAATCTGACTTGCAA+TGG + chr4_3:72416768-72416787 None:intergenic 40.0%
! TGATAGCTTGTGATGGCATA+TGG - chr4_3:72416987-72417006 Msa0661210:CDS 40.0%
TTGCCTATCAAGCCAACAAT+TGG - chr4_3:72417093-72417112 Msa0661210:intron 40.0%
!! CTACCAATTGTTGGCTTGAT+AGG + chr4_3:72417099-72417118 None:intergenic 40.0%
TGTACGTCAAGAACTTCTCT+TGG - chr4_3:72417123-72417142 Msa0661210:intron 40.0%
TTCAAGTAACGCACATCAAC+AGG + chr4_3:72417376-72417395 None:intergenic 40.0%
! CCTTTATACCAGTTCTGGTT+CGG + chr4_3:72417508-72417527 None:intergenic 40.0%
TGGAACCTTTATACCAGTTC+TGG + chr4_3:72417513-72417532 None:intergenic 40.0%
CATAACACAGAACCGATGAT+TGG + chr4_3:72417533-72417552 None:intergenic 40.0%
TCTGCGCATTAACTGATGTT+AGG - chr4_3:72417724-72417743 Msa0661210:CDS 40.0%
!! TTTGTGAAAGAGTGCTAGAC+CGG - chr4_3:72418061-72418080 Msa0661210:intron 40.0%
GAAGATGATTGTTCTTGAGC+CGG + chr4_3:72418180-72418199 None:intergenic 40.0%
TGCATCATCTGAACCAACAT+TGG - chr4_3:72418212-72418231 Msa0661210:intron 40.0%
CTTCAACTGTTCTCCAATGT+TGG + chr4_3:72418228-72418247 None:intergenic 40.0%
TGACTAGAAATACCGACACT+TGG + chr4_3:72418434-72418453 None:intergenic 40.0%
AGAGAAAGAGGGAGAGTAAG+AGG + chr4_3:72413868-72413887 None:intergenic 45.0%
CATGAAGAACAAGGAAGACC+CGG + chr4_3:72414112-72414131 None:intergenic 45.0%
TAAGTACTTGTCTGCAGTGG+CGG - chr4_3:72414901-72414920 Msa0661210:intron 45.0%
GGTGTATATGATGGTCATGG+AGG - chr4_3:72415203-72415222 Msa0661210:intron 45.0%
AGAATGGATGAGATGATGCG+TGG - chr4_3:72415588-72415607 Msa0661210:intron 45.0%
ATGAGATGATGCGTGGTCAA+AGG - chr4_3:72415595-72415614 Msa0661210:intron 45.0%
TGAGATGATGCGTGGTCAAA+GGG - chr4_3:72415596-72415615 Msa0661210:intron 45.0%
TGGAGGGAATTAGCAGTCTT+AGG - chr4_3:72415621-72415640 Msa0661210:CDS 45.0%
CAAAGGCCCAATCATCACTT+TGG + chr4_3:72415719-72415738 None:intergenic 45.0%
! GATTGGGCCTTTGAAAAGGT+AGG - chr4_3:72415726-72415745 Msa0661210:intron 45.0%
GGTCCATCAAAGTCTGAATG+AGG + chr4_3:72415861-72415880 None:intergenic 45.0%
! GACTTTGATGGACCAACTTC+AGG - chr4_3:72415867-72415886 Msa0661210:intron 45.0%
CGCTGCGTAATATCTAGGAA+TGG - chr4_3:72415954-72415973 Msa0661210:intron 45.0%
TGCATGTCTCGTGATTTGAG+AGG - chr4_3:72416105-72416124 Msa0661210:intron 45.0%
ACCTGAGCTTGTGATTGAGA+AGG - chr4_3:72416286-72416305 Msa0661210:intron 45.0%
TCCTTCTCAATCACAAGCTC+AGG + chr4_3:72416290-72416309 None:intergenic 45.0%
!!! GCTGGTGGTTTTATTCATGC+AGG - chr4_3:72416323-72416342 Msa0661210:intron 45.0%
! GAGGGGAATGTCACTTACTA+AGG + chr4_3:72416441-72416460 None:intergenic 45.0%
GCTTGTGATGGCATATGGTA+TGG - chr4_3:72416992-72417011 Msa0661210:CDS 45.0%
CCGAACCAGAACTGGTATAA+AGG - chr4_3:72417505-72417524 Msa0661210:intron 45.0%
TGCTGGCCATCACAAGTTAA+AGG - chr4_3:72417694-72417713 Msa0661210:CDS 45.0%
!! CGAGTGCCTTTAACTTGTGA+TGG + chr4_3:72417703-72417722 None:intergenic 45.0%
!! GTGTGGTTTGATTCGGTCTT+TGG + chr4_3:72417758-72417777 None:intergenic 45.0%
GTTCATGAACTGAACTGAGC+TGG + chr4_3:72417836-72417855 None:intergenic 45.0%
CAATAAGCGGTTCCAAGTGT+CGG - chr4_3:72418419-72418438 Msa0661210:intron 45.0%
!! GGAGGTTGAAGAAGAGTACC+AGG + chr4_3:72413929-72413948 None:intergenic 50.0%
! TCTTGAGCACCTGTTGGTGA+AGG + chr4_3:72415348-72415367 None:intergenic 50.0%
CTTCACTCTTGAGCACCTGT+TGG + chr4_3:72415354-72415373 None:intergenic 50.0%
GAGATGATGCGTGGTCAAAG+GGG - chr4_3:72415597-72415616 Msa0661210:intron 50.0%
GGGCCTCATTCAGACTTTGA+TGG - chr4_3:72415855-72415874 Msa0661210:intron 50.0%
CAAGCAGTGCTTCCTGAAGT+TGG + chr4_3:72415882-72415901 None:intergenic 50.0%
ATCATAGCTCAAGGCGCAGA+GGG + chr4_3:72416459-72416478 None:intergenic 50.0%
TATCATAGCTCAAGGCGCAG+AGG + chr4_3:72416460-72416479 None:intergenic 50.0%
! TGGTTTGTCCGAACCAGAAC+TGG - chr4_3:72417497-72417516 Msa0661210:intron 50.0%
!! AAGAGTGCTAGACCGGTGTT+TGG - chr4_3:72418068-72418087 Msa0661210:intron 50.0%
CCATCACCAACAGCCAAAGA+TGG + chr4_3:72418096-72418115 None:intergenic 50.0%
! CCATCTTTGGCTGTTGGTGA+TGG - chr4_3:72418093-72418112 Msa0661210:intron 50.0%
GATGATTGTTCTTGAGCCGG+CGG + chr4_3:72418177-72418196 None:intergenic 50.0%
GCAAGGTTGGCGTGCAACAA+TGG - chr4_3:72414675-72414694 Msa0661210:intron 55.0%
TGCCAAGCACCTTCACCAAC+AGG - chr4_3:72415336-72415355 Msa0661210:intron 55.0%
!! CACCTGTTGGTGAAGGTGCT+TGG + chr4_3:72415341-72415360 None:intergenic 55.0%
TGATGCGTGGTCAAAGGGGA+TGG - chr4_3:72415601-72415620 Msa0661210:intron 55.0%
AAGCTCACTTGCCGGTAGGT+AGG + chr4_3:72416401-72416420 None:intergenic 55.0%
AAGGAAGCTCACTTGCCGGT+AGG + chr4_3:72416405-72416424 None:intergenic 55.0%
TCATAGCTCAAGGCGCAGAG+GGG + chr4_3:72416458-72416477 None:intergenic 55.0%
CCAAAGATGGCGCCAAACAC+CGG + chr4_3:72418083-72418102 None:intergenic 55.0%
TTGGCGCCATCTTTGGCTGT+TGG - chr4_3:72418087-72418106 Msa0661210:intron 55.0%
GCATGCGGCGCATCTTGATG+TGG - chr4_3:72415160-72415179 Msa0661210:intron 60.0%
TGCGTGGTCAAAGGGGATGG+AGG - chr4_3:72415604-72415623 Msa0661210:intron 60.0%
GCGTGGTCAAAGGGGATGGA+GGG - chr4_3:72415605-72415624 Msa0661210:intron 60.0%
CCGGTGTTTGGCGCCATCTT+TGG - chr4_3:72418080-72418099 Msa0661210:intron 60.0%
ACTGCAGACAAGTGCACCGC+CGG - chr4_3:72418158-72418177 Msa0661210:intron 60.0%
GGCGGTGCACTTGTCTGCAG+TGG + chr4_3:72418159-72418178 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 72413831 72418535 72413831 ID=Msa0661210;Name=Msa0661210
chr4_3 mRNA 72413831 72418535 72413831 ID=Msa0661210-mRNA-1;Parent=Msa0661210;Name=Msa0661210-mRNA-1;_AED=0.15;_eAED=0.15;_QI=107|1|1|1|0.81|0.75|12|266|360
chr4_3 exon 72413831 72414056 72413831 ID=Msa0661210-mRNA-1:exon:21748;Parent=Msa0661210-mRNA-1
chr4_3 exon 72414081 72414324 72414081 ID=Msa0661210-mRNA-1:exon:21747;Parent=Msa0661210-mRNA-1
chr4_3 exon 72415222 72415276 72415222 ID=Msa0661210-mRNA-1:exon:21746;Parent=Msa0661210-mRNA-1
chr4_3 exon 72415358 72415410 72415358 ID=Msa0661210-mRNA-1:exon:21745;Parent=Msa0661210-mRNA-1
chr4_3 exon 72415613 72415689 72415613 ID=Msa0661210-mRNA-1:exon:21744;Parent=Msa0661210-mRNA-1
chr4_3 exon 72415983 72416106 72415983 ID=Msa0661210-mRNA-1:exon:21743;Parent=Msa0661210-mRNA-1
chr4_3 exon 72416386 72416511 72416386 ID=Msa0661210-mRNA-1:exon:21742;Parent=Msa0661210-mRNA-1
chr4_3 exon 72416623 72416776 72416623 ID=Msa0661210-mRNA-1:exon:21741;Parent=Msa0661210-mRNA-1
chr4_3 exon 72416944 72417052 72416944 ID=Msa0661210-mRNA-1:exon:21740;Parent=Msa0661210-mRNA-1
chr4_3 exon 72417142 72417205 72417142 ID=Msa0661210-mRNA-1:exon:21739;Parent=Msa0661210-mRNA-1
chr4_3 exon 72417661 72417785 72417661 ID=Msa0661210-mRNA-1:exon:21738;Parent=Msa0661210-mRNA-1
chr4_3 exon 72418437 72418535 72418437 ID=Msa0661210-mRNA-1:exon:21737;Parent=Msa0661210-mRNA-1
chr4_3 five_prime_UTR 72418437 72418535 72418437 ID=Msa0661210-mRNA-1:five_prime_utr;Parent=Msa0661210-mRNA-1
chr4_3 five_prime_UTR 72417778 72417785 72417778 ID=Msa0661210-mRNA-1:five_prime_utr;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72417661 72417777 72417661 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72417142 72417205 72417142 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72416944 72417052 72416944 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72416623 72416776 72416623 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72416386 72416511 72416386 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72415983 72416106 72415983 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72415613 72415689 72415613 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72415358 72415410 72415358 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72415222 72415276 72415222 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 CDS 72414121 72414324 72414121 ID=Msa0661210-mRNA-1:cds;Parent=Msa0661210-mRNA-1
chr4_3 three_prime_UTR 72414081 72414120 72414081 ID=Msa0661210-mRNA-1:three_prime_utr;Parent=Msa0661210-mRNA-1
chr4_3 three_prime_UTR 72413831 72414056 72413831 ID=Msa0661210-mRNA-1:three_prime_utr;Parent=Msa0661210-mRNA-1
Gene Sequence

>Msa0661210

ATGGGAACAACTCTCAGCATTCCTAAAACTGAAAAGTTTTCAGAAGATGGTGAAAATGACAATCTTAGATATGGTTTATCATCTATGCAAGGTTGGCGTGCAACAATGGAAGATGCACATGCGGCGCATCTTGATGTGGATTCATCCACTTCGTTTTTCGGTGTATATGATGGTCATGGAGGTAAGGCGGTTGCAAAGTTTTGTGCCAAGCACCTTCACCAACAGGTGCTCAAGAGTGAAGAATACATAGCTGGAGATGTTGGAACATCTCTTACGAAAGCATTTTTCAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTAGCAGTCTTAGGTGATAAGGTAAAAGGGTTCAATGGAATGATTGAAGGATTGATTCGGTCTCCCAGAAGCAATGATAATAAGGACCAAAGTGATGATTGGGCCTTTGAAAAGGGGCCTCATTCAGACTTTGATGGACCAACTTCAGGAAGCACTGCTTGTGTTGCAATCATTAGAAACAACCTACTTTTTGTTGCGAATGCTGGTGATTCACGCTGCGTAATATCTAGGAATGGTCAGGCATACAATTTATCTAGAGATCACAAACCTGAGCTTGTGATTGAGAAGGAAAGAATCTATAAAGCTGGTGGTTTTATTCATGCAGGACGAATTAATGGGAGTTTAAATCTTGCAAGAGCTATAGGTGACGTGGACTTCAAAAATAATAGATTTCTTTCTGCTGAAAAACAAGTTGTGACCGCCAATCCAGACATAAACATTGTTGACCTTCATGACGAAGATGAGTTTATAGTGATAGCTTGTGATGGCATATGGGATTGCCTATCAAGCCAACAATTGGTAGATTTTGTACGTCAAGAACTTCTCTTGGAAACTAAACTTTCTGAGGTTTGTGAAAGAGTGCTAGACCGGTGTTTGGCGCCATCTTTGGCTGTTGGTGATGGATGCGATAACATGACAATGATATTGGTGCAGTTTAAAAAACCACTGCAGACAAGTGCACCGCCGGCTCAAGAACAATCATCTTCAAATGAACAAGATGCATCATCTGAACCAACATTGGAGAACAGTTGA

Protein sequence

>Msa0661210

MGTTLSIPKTEKFSEDGENDNLRYGLSSMQGWRATMEDAHAAHLDVDSSTSFFGVYDGHGGKAVAKFCAKHLHQQVLKSEEYIAGDVGTSLTKAFFRMDEMMRGQRGWRELAVLGDKVKGFNGMIEGLIRSPRSNDNKDQSDDWAFEKGPHSDFDGPTSGSTACVAIIRNNLLFVANAGDSRCVISRNGQAYNLSRDHKPELVIEKERIYKAGGFIHAGRINGSLNLARAIGDVDFKNNRFLSAEKQVVTANPDINIVDLHDEDEFIVIACDGIWDCLSSQQLVDFVRQELLLETKLSEVCERVLDRCLAPSLAVGDGCDNMTMILVQFKKPLQTSAPPAQEQSSSNEQDASSEPTLENS*