AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0722920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0722920 MtrunA17_Chr5g0413951 93.714 350 22 0 1 350 1 350 0.0 636
Msa0722920 MtrunA17_Chr5g0413941 84.857 350 53 0 1 350 1 350 0.0 595
Msa0722920 MtrunA17_Chr5g0413931 73.392 342 91 0 8 349 7 348 0.0 525
Msa0722920 MtrunA17_Chr5g0413921 69.883 342 98 1 5 346 5 341 1.43e-176 493
Msa0722920 MtrunA17_Chr7g0227921 44.444 342 183 3 12 349 16 354 9.96e-88 268
Msa0722920 MtrunA17_Chr3g0126101 42.059 340 191 5 12 350 11 345 9.32e-83 255
Msa0722920 MtrunA17_Chr4g0059311 42.012 338 191 4 12 345 16 352 2.06e-81 251
Msa0722920 MtrunA17_Chr6g0451251 45.906 342 175 5 12 347 17 354 7.91e-78 243
Msa0722920 MtrunA17_Chr5g0413961 39.763 337 197 3 12 346 19 351 1.55e-76 239
Msa0722920 MtrunA17_Chr6g0451211 41.349 341 188 6 12 345 17 352 2.83e-76 239
Msa0722920 MtrunA17_Chr6g0451201 42.982 342 184 5 12 349 17 351 4.50e-75 236
Msa0722920 MtrunA17_Chr1g0150151 38.529 340 200 5 10 345 14 348 1.89e-74 234
Msa0722920 MtrunA17_Chr6g0451261 41.611 298 172 2 10 306 14 310 3.11e-70 235
Msa0722920 MtrunA17_Chr6g0451171 39.634 328 183 4 25 345 30 349 4.96e-70 223
Msa0722920 MtrunA17_Chr3g0126091 34.795 342 215 6 12 346 16 356 6.13e-61 199
Msa0722920 MtrunA17_Chr7g0255561 35.494 324 197 5 12 327 19 338 8.09e-59 194
Msa0722920 MtrunA17_Chr7g0255581 35.494 324 197 5 12 327 19 338 8.09e-59 194
Msa0722920 MtrunA17_Chr3g0114731 35.588 340 212 5 12 350 23 356 7.09e-58 192
Msa0722920 MtrunA17_Chr3g0081511 32.716 324 202 5 12 326 22 338 5.67e-54 182
Msa0722920 MtrunA17_Chr1g0155761 29.885 348 222 5 12 339 26 371 2.36e-52 178
Msa0722920 MtrunA17_Chr8g0354121 30.172 348 228 6 10 347 16 358 5.44e-52 177
Msa0722920 MtrunA17_Chr3g0114691 32.787 305 201 3 31 332 44 347 1.42e-51 176
Msa0722920 MtrunA17_Chr1g0160171 33.333 315 208 2 12 325 21 334 3.62e-51 174
Msa0722920 MtrunA17_Chr3g0081421 31.804 327 202 7 12 325 22 340 5.47e-51 174
Msa0722920 MtrunA17_Chr6g0483401 31.269 323 209 5 33 349 36 351 1.61e-50 172
Msa0722920 MtrunA17_Chr6g0463971 32.515 326 214 4 12 333 21 344 2.86e-49 169
Msa0722920 MtrunA17_Chr3g0129601 31.661 319 213 3 25 339 47 364 6.42e-49 168
Msa0722920 MtrunA17_Chr1g0182291 31.692 325 209 7 23 339 31 350 6.77e-49 168
Msa0722920 MtrunA17_Chr3g0142131 28.763 372 230 7 12 350 25 394 2.19e-48 167
Msa0722920 MtrunA17_Chr8g0383731 34.365 323 200 6 25 338 23 342 2.49e-48 166
Msa0722920 MtrunA17_Chr1g0164831 32.911 316 202 4 25 333 21 333 2.65e-48 166
Msa0722920 MtrunA17_Chr1g0160181 32.710 321 209 6 12 327 23 341 5.85e-47 163
Msa0722920 MtrunA17_Chr5g0408031 29.762 336 216 5 12 329 15 348 1.86e-46 162
Msa0722920 MtrunA17_Chr7g0263101 32.051 312 199 7 21 325 27 332 4.01e-46 161
Msa0722920 MtrunA17_Chr2g0278561 30.571 350 217 5 5 341 13 349 1.08e-45 160
Msa0722920 MtrunA17_Chr6g0451191 37.662 231 131 4 121 345 1 224 1.22e-45 155
Msa0722920 MtrunA17_Chr8g0334761 30.094 319 214 3 12 325 15 329 1.85e-45 159
Msa0722920 MtrunA17_Chr4g0050881 32.394 355 203 8 12 344 14 353 3.62e-45 158
Msa0722920 MtrunA17_Chr2g0290611 32.087 321 206 4 12 325 17 332 3.85e-45 158
Msa0722920 MtrunA17_Chr2g0284261 30.915 317 211 4 12 325 13 324 1.26e-44 157
Msa0722920 MtrunA17_Chr1g0186571 28.614 332 218 5 12 334 18 339 3.30e-44 155
Msa0722920 MtrunA17_Chr1g0186611 27.628 333 217 6 27 350 36 353 5.78e-44 155
Msa0722920 MtrunA17_Chr5g0408001 29.513 349 227 6 12 343 15 361 7.38e-44 155
Msa0722920 MtrunA17_Chr2g0278551 32.132 333 208 5 12 331 17 344 9.78e-44 155
Msa0722920 MtrunA17_Chr3g0114711 28.307 378 226 9 13 350 20 392 1.48e-43 154
Msa0722920 MtrunA17_Chr5g0408041 29.345 351 227 6 16 347 20 368 2.10e-43 154
Msa0722920 MtrunA17_Chr5g0407991 28.455 369 237 8 1 347 1 364 1.33e-42 152
Msa0722920 MtrunA17_Chr7g0271561 30.124 322 216 4 12 325 12 332 1.81e-42 151
Msa0722920 MtrunA17_Chr3g0129591 31.153 321 205 3 16 325 14 329 3.39e-42 150
Msa0722920 MtrunA17_Chr8g0369841 29.042 334 219 5 10 327 12 343 3.79e-42 150
Msa0722920 MtrunA17_Chr1g0171301 29.712 313 213 4 22 328 27 338 6.76e-42 149
Msa0722920 MtrunA17_Chr1g0186641 26.959 319 222 6 27 340 33 345 1.18e-41 148
Msa0722920 MtrunA17_Chr4g0050891 31.366 322 214 5 5 320 11 331 1.76e-41 148
Msa0722920 MtrunA17_Chr1g0184221 25.519 337 231 3 12 333 21 352 3.33e-41 148
Msa0722920 MtrunA17_Chr4g0073241 30.702 342 206 7 27 347 28 359 7.83e-41 147
Msa0722920 MtrunA17_Chr3g0114701 31.790 324 204 6 12 325 14 330 2.31e-40 146
Msa0722920 MtrunA17_Chr5g0407971 26.705 352 238 6 12 346 16 364 3.82e-40 145
Msa0722920 MtrunA17_Chr1g0186601 27.300 337 226 5 12 339 21 347 5.37e-40 144
Msa0722920 MtrunA17_Chr2g0278541 29.538 325 215 4 12 325 17 338 7.03e-40 145
Msa0722920 MtrunA17_Chr3g0129571 29.268 328 219 7 16 334 16 339 9.16e-40 144
Msa0722920 MtrunA17_Chr1g0186561 28.529 333 218 6 12 334 21 343 2.37e-39 142
Msa0722920 MtrunA17_Chr4g0050941 30.031 323 216 4 12 325 17 338 4.65e-39 142
Msa0722920 MtrunA17_Chr1g0160111 29.023 348 233 6 1 340 1 342 1.19e-38 141
Msa0722920 MtrunA17_Chr2g0310441 28.041 296 210 3 32 325 35 329 2.39e-38 140
Msa0722920 MtrunA17_Chr2g0332001 29.006 362 232 7 5 350 36 388 7.40e-38 139
Msa0722920 MtrunA17_Chr4g0051021 29.091 330 227 4 12 337 19 345 3.80e-36 134
Msa0722920 MtrunA17_Chr5g0441761 26.970 330 234 3 6 334 13 336 5.00e-36 134
Msa0722920 MtrunA17_Chr8g0334751 28.696 345 235 5 12 347 16 358 1.27e-34 130
Msa0722920 MtrunA17_Chr8g0334771 29.492 295 207 1 32 325 35 329 1.06e-33 128
Msa0722920 MtrunA17_Chr1g0211801 30.992 242 162 3 25 264 29 267 7.72e-33 123
Msa0722920 MtrunA17_Chr5g0428881 25.806 341 248 4 11 347 22 361 8.38e-33 125
Msa0722920 MtrunA17_Chr3g0084091 30.830 253 172 3 88 338 11 262 1.69e-32 123
Msa0722920 MtrunA17_Chr3g0129581 28.616 318 217 4 16 325 14 329 2.25e-32 124
Msa0722920 MtrunA17_Chr1g0177221 30.328 244 166 4 12 253 23 264 1.10e-29 114
Msa0722920 MtrunA17_Chr4g0056081 25.758 330 236 7 12 334 19 346 3.20e-29 115
Msa0722920 MtrunA17_Chr5g0399281 25.364 343 238 6 12 343 13 348 2.88e-28 112
Msa0722920 MtrunA17_Chr5g0404811 28.571 217 147 3 120 331 6 219 5.18e-28 109
Msa0722920 MtrunA17_Chr5g0429001 29.268 246 163 2 88 325 32 274 9.68e-28 110
Msa0722920 MtrunA17_Chr4g0050931 25.501 349 209 9 5 345 10 315 4.02e-27 108
Msa0722920 MtrunA17_Chr4g0051001 27.609 297 208 4 12 303 36 330 8.64e-26 105
Msa0722920 MtrunA17_Chr2g0278021 29.515 227 151 3 121 340 1 225 7.67e-24 99.4
Msa0722920 MtrunA17_Chr6g0451181 44.954 109 60 0 12 120 17 125 1.70e-22 91.7
Msa0722920 MtrunA17_Chr6g0451241 47.368 95 46 2 253 344 7 100 1.39e-19 83.2
Msa0722920 MtrunA17_Chr8g0334721 36.111 108 69 0 218 325 2 109 4.66e-19 83.2
Msa0722920 MtrunA17_Chr8g0334711 27.225 191 139 0 12 202 15 205 8.56e-19 83.6
Msa0722920 MtrunA17_Chr4g0050911 37.398 123 66 3 88 200 12 133 4.29e-13 66.6
Msa0722920 MtrunA17_Chr1g0177231 28.235 85 61 0 259 343 34 118 1.35e-12 64.3
Msa0722920 MtrunA17_Chr1g0172891 26.596 94 69 0 253 346 6 99 1.71e-12 63.5
Msa0722920 MtrunA17_Chr1g0182261 32.258 124 81 3 207 327 89 212 4.45e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0722920 AT5G40230.1 42.274 343 192 2 10 349 23 362 1.61e-88 271
Msa0722920 AT3G28050.1 45.122 328 169 4 10 333 14 334 5.16e-88 269
Msa0722920 AT5G40240.1 40.708 339 187 3 12 343 24 355 2.73e-86 265
Msa0722920 AT5G40240.3 40.708 339 187 3 12 343 24 355 2.73e-86 265
Msa0722920 AT5G40240.2 40.708 339 187 3 12 343 38 369 8.33e-86 264
Msa0722920 AT5G40210.1 41.935 341 178 5 8 345 13 336 1.38e-79 247
Msa0722920 AT4G15540.1 42.059 340 184 2 10 349 19 345 2.23e-73 231
Msa0722920 AT4G15540.2 42.059 340 184 2 10 349 19 345 2.23e-73 231
Msa0722920 AT3G28080.1 41.210 347 191 6 10 349 16 356 8.38e-69 220
Msa0722920 AT3G28100.1 41.590 327 175 4 10 327 16 335 6.31e-68 217
Msa0722920 AT3G28070.1 40.115 349 191 5 10 349 19 358 1.08e-64 209
Msa0722920 AT3G28130.2 37.931 348 207 5 6 349 11 353 4.04e-63 205
Msa0722920 AT3G28080.2 40.058 347 187 7 10 349 16 348 8.69e-62 201
Msa0722920 AT3G28070.2 41.573 267 138 5 92 349 9 266 3.01e-59 192
Msa0722920 AT3G28080.5 42.264 265 140 6 92 349 9 267 1.02e-57 188
Msa0722920 AT3G28080.7 42.264 265 140 6 92 349 9 267 1.02e-57 188
Msa0722920 AT3G28080.8 42.264 265 140 6 92 349 9 267 1.02e-57 188
Msa0722920 AT3G28080.6 42.264 265 140 6 92 349 9 267 1.02e-57 188
Msa0722920 AT2G39510.1 33.939 330 207 5 11 334 11 335 1.62e-55 186
Msa0722920 AT1G21890.1 31.832 333 214 4 12 333 15 345 2.05e-55 186
Msa0722920 AT5G07050.1 33.639 327 207 5 12 329 22 347 1.21e-54 184
Msa0722920 AT3G28070.3 40.594 303 164 4 10 303 19 314 2.59e-53 178
Msa0722920 AT3G18200.2 30.838 334 223 5 3 333 30 358 1.52e-52 178
Msa0722920 AT4G08300.1 33.442 308 200 4 31 334 34 340 2.33e-52 177
Msa0722920 AT3G28130.5 39.695 262 149 5 92 349 11 267 4.37e-52 174
Msa0722920 AT3G28130.1 39.695 262 149 5 92 349 11 267 4.37e-52 174
Msa0722920 AT1G44800.1 31.132 318 213 4 31 345 34 348 1.98e-50 172
Msa0722920 AT3G28080.3 37.283 346 152 8 10 349 16 302 9.45e-48 164
Msa0722920 AT1G70260.1 32.188 320 203 7 25 333 29 345 1.79e-46 162
Msa0722920 AT5G45370.1 30.514 331 218 4 10 339 22 341 3.02e-46 161
Msa0722920 AT1G09380.1 31.006 358 218 8 12 345 12 364 1.05e-45 160
Msa0722920 AT1G75500.1 27.793 367 236 6 12 350 24 389 1.99e-45 160
Msa0722920 AT1G75500.2 27.793 367 236 6 12 350 24 389 1.99e-45 160
Msa0722920 AT1G21890.2 31.699 306 196 4 12 306 15 318 5.10e-45 157
Msa0722920 AT2G40900.1 30.395 329 219 5 12 336 15 337 5.22e-45 159
Msa0722920 AT4G28040.1 31.105 344 211 8 12 344 12 340 6.03e-45 158
Msa0722920 AT4G28040.5 31.105 344 211 8 12 344 12 340 6.03e-45 158
Msa0722920 AT4G28040.3 31.105 344 211 8 12 344 12 340 6.03e-45 158
Msa0722920 AT4G28040.4 31.105 344 211 8 12 344 12 340 6.03e-45 158
Msa0722920 AT4G28040.2 31.105 344 211 8 12 344 12 340 6.03e-45 158
Msa0722920 AT2G37460.1 29.683 347 217 6 11 344 18 350 1.56e-44 157
Msa0722920 AT5G45370.2 29.769 346 225 6 10 339 22 365 1.88e-44 157
Msa0722920 AT5G45370.4 29.769 346 225 6 10 339 22 365 1.88e-44 157
Msa0722920 AT3G28070.5 37.395 238 131 5 121 349 1 229 6.86e-44 151
Msa0722920 AT4G08290.1 28.571 343 238 5 12 349 17 357 1.42e-43 155
Msa0722920 AT3G53210.1 28.070 342 235 5 6 340 8 345 5.57e-43 153
Msa0722920 AT3G28080.9 38.559 236 132 6 121 349 1 230 1.45e-42 148
Msa0722920 AT3G30340.1 29.642 307 207 4 25 326 28 330 1.74e-42 151
Msa0722920 AT4G30420.1 28.840 319 219 6 21 333 11 327 1.13e-41 149
Msa0722920 AT3G56620.1 32.166 314 203 5 12 322 15 321 1.30e-41 149
Msa0722920 AT5G13670.1 29.085 306 208 6 27 326 27 329 1.49e-41 149
Msa0722920 AT4G30420.2 28.840 319 219 6 21 333 21 337 1.85e-41 149
Msa0722920 AT1G43650.1 30.189 318 217 3 12 328 11 324 1.83e-40 145
Msa0722920 AT1G68170.1 29.630 351 225 5 10 346 5 347 3.43e-40 145
Msa0722920 AT1G68170.2 29.630 351 225 5 10 346 15 357 4.85e-40 145
Msa0722920 AT4G01440.1 26.837 313 227 2 23 334 25 336 4.95e-40 145
Msa0722920 AT5G64700.1 27.439 328 229 3 27 346 27 353 1.36e-39 144
Msa0722920 AT3G18200.1 31.739 230 151 3 106 333 3 228 1.40e-38 138
Msa0722920 AT4G19185.1 27.628 333 225 2 10 327 23 354 1.80e-38 141
Msa0722920 AT3G28100.3 39.442 251 137 3 10 251 16 260 1.94e-38 138
Msa0722920 AT3G28130.3 35.622 233 141 5 121 349 1 228 4.37e-38 136
Msa0722920 AT3G45870.1 28.125 320 218 3 12 320 16 334 2.72e-37 138
Msa0722920 AT3G28080.4 37.121 264 101 8 92 349 9 213 2.31e-36 131
Msa0722920 AT4G01440.3 27.915 283 202 2 25 306 27 308 7.92e-36 132
Msa0722920 AT1G25270.1 28.771 358 216 9 12 350 7 344 5.32e-35 131
Msa0722920 AT1G60050.1 27.907 344 228 7 25 349 30 372 6.70e-35 131
Msa0722920 AT3G28130.4 36.145 249 156 2 6 251 11 259 1.31e-34 128
Msa0722920 AT3G53210.2 28.309 272 186 3 75 340 20 288 3.32e-34 128
Msa0722920 AT2G37450.2 30.675 326 198 5 12 334 13 313 4.95e-34 128
Msa0722920 AT5G45370.6 29.658 263 169 4 92 339 2 263 2.27e-33 125
Msa0722920 AT5G45370.5 29.658 263 169 4 92 339 2 263 2.27e-33 125
Msa0722920 AT4G19185.2 27.799 259 171 2 84 327 19 276 2.92e-33 125
Msa0722920 AT5G47470.1 26.979 341 231 6 12 344 34 364 6.97e-33 125
Msa0722920 AT4G01440.5 28.899 218 155 0 107 324 1 218 8.07e-33 123
Msa0722920 AT4G01440.2 28.899 218 155 0 107 324 1 218 8.07e-33 123
Msa0722920 AT5G47470.2 26.979 341 231 6 12 344 62 392 1.13e-32 125
Msa0722920 AT5G47470.3 26.498 317 224 4 12 325 62 372 9.36e-32 123
Msa0722920 AT3G45870.8 27.213 305 210 3 12 305 16 319 9.78e-32 122
Msa0722920 AT4G08290.2 31.301 246 163 4 12 253 17 260 5.98e-31 119
Msa0722920 AT3G28100.2 43.069 202 101 2 10 203 16 211 1.17e-30 117
Msa0722920 AT4G01430.1 25.301 332 240 6 25 350 26 355 2.98e-30 119
Msa0722920 AT2G37450.3 33.878 245 155 3 93 334 1 241 4.66e-30 116
Msa0722920 AT1G01070.2 28.626 262 182 4 92 349 53 313 9.50e-30 116
Msa0722920 AT1G01070.1 27.219 338 227 7 23 349 31 360 1.19e-29 117
Msa0722920 AT3G28130.6 39.901 203 120 1 6 206 11 213 2.32e-29 112
Msa0722920 AT1G11450.3 25.758 330 237 5 12 339 20 343 1.22e-28 114
Msa0722920 AT3G53210.3 28.235 255 174 4 6 255 8 258 6.43e-28 110
Msa0722920 AT3G30340.2 30.085 236 156 4 25 255 28 259 6.54e-28 110
Msa0722920 AT1G11450.1 27.711 249 174 3 92 339 8 251 1.19e-27 109
Msa0722920 AT1G11450.2 27.711 249 174 3 92 339 49 292 2.42e-27 109
Msa0722920 AT1G11450.5 27.711 249 174 3 92 339 56 299 3.34e-27 109
Msa0722920 AT4G01440.4 28.085 235 167 2 22 255 24 257 3.25e-26 105
Msa0722920 AT1G11460.1 27.234 235 170 1 92 325 100 334 2.46e-25 104
Msa0722920 AT4G01450.2 28.349 321 215 5 8 325 15 323 1.22e-24 103
Msa0722920 AT4G01450.1 27.759 299 201 5 8 303 15 301 4.67e-24 101
Msa0722920 AT4G01430.2 25.965 285 203 6 25 303 26 308 1.16e-23 99.8
Msa0722920 AT5G45370.3 28.326 233 151 4 122 339 74 305 1.60e-23 99.8
Msa0722920 AT3G45870.5 27.523 218 146 3 114 320 43 259 9.56e-23 97.1
Msa0722920 AT3G45870.9 26.038 265 184 3 12 265 16 279 1.24e-22 96.3
Msa0722920 AT4G01450.4 28.846 260 167 6 8 261 15 262 1.52e-22 95.5
Msa0722920 AT1G43650.2 29.880 251 169 4 12 260 11 256 6.47e-22 94.0
Msa0722920 AT1G11450.4 24.830 294 217 4 12 303 20 311 1.06e-21 94.4
Msa0722920 AT5G64700.2 28.571 238 153 5 27 252 27 259 1.72e-21 92.8
Msa0722920 AT2G37450.1 32.692 156 104 1 180 334 119 274 5.34e-21 92.0
Msa0722920 AT4G01450.3 30.882 204 126 5 8 208 15 206 4.23e-19 85.9
Msa0722920 AT4G24980.1 25.828 302 154 10 27 326 6 239 4.72e-18 83.2
Msa0722920 AT3G28060.1 36.441 118 61 3 193 303 44 154 5.28e-18 80.5
Msa0722920 AT4G16620.1 21.914 324 248 3 6 326 10 331 1.34e-17 83.2
Msa0722920 AT4G01430.3 23.744 219 162 3 136 350 1 218 2.91e-17 80.1
Msa0722920 AT3G45870.6 26.368 201 136 3 114 303 43 242 4.41e-17 80.1
Msa0722920 AT3G45870.7 26.368 201 136 3 114 303 43 242 4.41e-17 80.1
Msa0722920 AT3G45870.2 27.517 149 107 1 172 320 36 183 2.60e-15 74.7
Msa0722920 AT4G16620.4 23.305 236 177 2 93 326 1 234 3.64e-14 72.0
Msa0722920 AT4G16620.2 23.305 236 177 2 93 326 1 234 3.64e-14 72.0

Find 63 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAAATTGATGTTGAAAT+TGG 0.196644 5_1:-20432694 None:intergenic
GGGAAATCAGATTGGATAAT+TGG 0.197562 5_1:+20436174 Msa0722920:CDS
TTCTGTAGATTACTTCTTCT+TGG 0.209053 5_1:+20432712 Msa0722920:CDS
TCCAATCTGATTTCCCTAAA+AGG 0.218236 5_1:-20436167 None:intergenic
AGTGCAATGACCACTCTTAA+AGG 0.236929 5_1:-20437095 None:intergenic
GGAGCTGCTATCATAGTTAT+TGG 0.246971 5_1:+20437279 Msa0722920:CDS
GTGTTTATCACTAGCTCTTC+TGG 0.247926 5_1:-20436640 None:intergenic
ACTCATATGTTAATGACTTC+TGG 0.288657 5_1:+20432919 Msa0722920:CDS
GGCACAGTGGTCTCTATTGC+AGG 0.308068 5_1:+20436060 Msa0722920:CDS
AGCAGCCAGGCAAAAGTTAT+TGG 0.314638 5_1:+20436039 Msa0722920:CDS
TTCTCTTCTGTTTATTGTCC+AGG 0.332403 5_1:+20436230 Msa0722920:CDS
TTGAACATAGCTACATATAT+TGG 0.334507 5_1:-20437071 None:intergenic
ACTTATTGGTGCAGCTTGAT+TGG 0.350269 5_1:+20437258 Msa0722920:intron
GTGAGAATTAACAAGCAAAT+TGG 0.359605 5_1:+20432449 Msa0722920:five_prime_UTR
GAAGAAAACATAGAGCTAAA+AGG 0.380922 5_1:-20432630 None:intergenic
AAACAAAAGCATGGATATAT+AGG 0.382758 5_1:+20437392 Msa0722920:CDS
TCATACTTGCTATAATTTCA+AGG 0.384041 5_1:+20433004 Msa0722920:CDS
TTGGGAGACAATCTTTATCT+TGG 0.387204 5_1:+20437137 Msa0722920:CDS
TGCATCTATGATCATTCTAA+TGG 0.410235 5_1:-20437588 None:intergenic
ACAGATAGCAACTGTTTATC+AGG 0.412768 5_1:-20436745 None:intergenic
ATATACAGACTTGGATTGTC+AGG 0.424821 5_1:+20436611 Msa0722920:intron
ATGAAATCAGCCACAAAAGA+TGG 0.452927 5_1:+20432574 Msa0722920:CDS
CAGAGGGAAATTCAAATGCT+TGG 0.454003 5_1:+20436713 Msa0722920:CDS
TCCGGCTAGACTTGAGGATA+AGG 0.472072 5_1:+20432400 Msa0722920:five_prime_UTR
AAAATTGATGTTGAAATTGG+AGG 0.472142 5_1:-20432691 None:intergenic
TTATTGGCATCATTAATCAA+TGG 0.483388 5_1:-20436114 None:intergenic
TACCACAAAACAGCAACAAA+TGG 0.500109 5_1:-20436662 None:intergenic
CTATGGTGGAAGAGAGTGGA+TGG 0.506366 5_1:-20432655 None:intergenic
GCAAGTATGAAGGTAAAAGC+AGG 0.513984 5_1:-20432991 None:intergenic
TCCTTATCCTCAAGTCTAGC+CGG 0.519688 5_1:-20432401 None:intergenic
TGAAATTATAGCAAGTATGA+AGG 0.526932 5_1:-20433001 None:intergenic
AGTGGTCATTGCACTTAGCA+TGG 0.527230 5_1:+20437103 Msa0722920:CDS
AATATAGAAATGGGAGCAAG+TGG 0.531385 5_1:+20436138 Msa0722920:CDS
GAGACAATCTTTATCTTGGA+AGG 0.532255 5_1:+20437141 Msa0722920:CDS
AATAATTTGTTACGTCGGAT+CGG 0.538176 5_1:-20432369 None:intergenic
ATTGATGTTGAAATTGGAGG+AGG 0.546987 5_1:-20432688 None:intergenic
GTGGTCATTGCACTTAGCAT+GGG 0.547313 5_1:+20437104 Msa0722920:CDS
CTCTGCAATGAGAGCTACAA+TGG 0.554415 5_1:-20436695 None:intergenic
TATTAGTCCGGCTAGACTTG+AGG 0.561826 5_1:+20432394 Msa0722920:five_prime_UTR
GCACAGTGGTCTCTATTGCA+GGG 0.571242 5_1:+20436061 Msa0722920:CDS
ACATGGGCATGTCATAAGAA+AGG 0.572940 5_1:+20437047 Msa0722920:CDS
CACAGTGGTCTCTATTGCAG+GGG 0.584216 5_1:+20436062 Msa0722920:CDS
TATACAGACTTGGATTGTCA+GGG 0.590593 5_1:+20436612 Msa0722920:intron
TGGTCATTGCACTTAGCATG+GGG 0.592040 5_1:+20437105 Msa0722920:CDS
TATGTTCAAACCTTTAAGAG+TGG 0.597273 5_1:+20437085 Msa0722920:CDS
TGCAGCTCAAATCGTTGAAG+TGG 0.600907 5_1:+20432537 Msa0722920:CDS
TCTGTTGTCAAACAAAAGCA+TGG 0.602843 5_1:+20437383 Msa0722920:CDS
CAAAAGCATGGATATATAGG+AGG 0.604044 5_1:+20437395 Msa0722920:exon
ATTGTAGCTCTCATTGCAGA+GGG 0.608307 5_1:+20436697 Msa0722920:CDS
TAAATTCAGTTCTCCCACGT+TGG 0.619926 5_1:+20432945 Msa0722920:CDS
CAAGTATGAAGGTAAAAGCA+GGG 0.622141 5_1:-20432990 None:intergenic
TGAAGAATGTTATACACACA+TGG 0.625464 5_1:+20437030 Msa0722920:CDS
GCAGCTCAAATCGTTGAAGT+GGG 0.629250 5_1:+20432538 Msa0722920:CDS
AGCATGGATATATAGGAGGA+CGG 0.632275 5_1:+20437399 Msa0722920:exon
CATTGTAGCTCTCATTGCAG+AGG 0.632723 5_1:+20436696 Msa0722920:CDS
AACAATAGCTGAAGCCAACG+TGG 0.634527 5_1:-20432959 None:intergenic
GAAGAATGTTATACACACAT+GGG 0.649829 5_1:+20437031 Msa0722920:CDS
GTGGTAGGTTATATTAAACA+TGG 0.651059 5_1:+20437440 Msa0722920:three_prime_UTR
GATATGGGCACAAACTCAAG+AGG 0.670914 5_1:+20437314 Msa0722920:CDS
GCTCAAATCGTTGAAGTGGG+TGG 0.685651 5_1:+20432541 Msa0722920:CDS
GGTCATTGCACTTAGCATGG+GGG 0.701257 5_1:+20437106 Msa0722920:CDS
ACAATAGCTGAAGCCAACGT+GGG 0.701649 5_1:-20432958 None:intergenic
GGCAAAAGTTATTGGCACAG+TGG 0.705210 5_1:+20436047 Msa0722920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTATTATTATTATA+AGG + chr5_1:20432843-20432862 Msa0722920:intron 0.0%
!!! TTTTTTTTTTAATTAAAAAA+TGG + chr5_1:20437231-20437250 Msa0722920:intron 0.0%
!!! TATTTTTTTAAATAATAGAG+TGG + chr5_1:20433662-20433681 Msa0722920:intron 10.0%
!! AATAAAAAATTAACATAATG+AGG - chr5_1:20435469-20435488 None:intergenic 10.0%
!! AAAAAGAAATTGTATATTAA+TGG + chr5_1:20437537-20437556 Msa0722920:three_prime_UTR 10.0%
!!! ATAAAAATAATTTGTTACGT+CGG - chr5_1:20432377-20432396 None:intergenic 15.0%
!!! ACAAATTATTTTTATTAGTC+CGG + chr5_1:20432382-20432401 Msa0722920:five_prime_UTR 15.0%
!! TTATTATAAGGATTTGAATT+TGG + chr5_1:20432855-20432874 Msa0722920:intron 15.0%
!!! TGACTGAATTATTATTATTT+TGG + chr5_1:20433264-20433283 Msa0722920:intron 15.0%
!!! TGAATTATTATTATTTTGGT+GGG + chr5_1:20433268-20433287 Msa0722920:intron 15.0%
!! ATTCCAATTAATCAAATTTA+AGG + chr5_1:20433291-20433310 Msa0722920:intron 15.0%
!!! AAAAGTTATTGTAGTTTTTA+AGG + chr5_1:20433317-20433336 Msa0722920:intron 15.0%
!!! TTGTTTCTTGATAATTTTAT+TGG + chr5_1:20433447-20433466 Msa0722920:intron 15.0%
!! ATCATATGTTTCATATAATA+GGG + chr5_1:20433592-20433611 Msa0722920:intron 15.0%
!! ATAATATGATCTATTTATAG+TGG - chr5_1:20433645-20433664 None:intergenic 15.0%
!! TTATATATGAAAAGCTTAAT+AGG - chr5_1:20434338-20434357 None:intergenic 15.0%
!! AACTTCAAAAATATCAATAA+TGG - chr5_1:20434369-20434388 None:intergenic 15.0%
!! TAAATACTCAATATATATGA+AGG - chr5_1:20435144-20435163 None:intergenic 15.0%
!! AATATCATCTATAATTGAAT+CGG - chr5_1:20435174-20435193 None:intergenic 15.0%
!!! GGATGTTTTTTTTTTTTTTT+TGG - chr5_1:20435729-20435748 None:intergenic 15.0%
!! ATATGTAATTGTAGTATTAA+AGG - chr5_1:20435828-20435847 None:intergenic 15.0%
!!! ATAATTTTTCACAAATTTGT+TGG - chr5_1:20437179-20437198 None:intergenic 15.0%
!!! TAAAAAATGGTTTAACTTAT+TGG + chr5_1:20437244-20437263 Msa0722920:intron 15.0%
!!! TTTTTAGAAGGAAAAAAAAA+AGG - chr5_1:20437679-20437698 None:intergenic 15.0%
!!! TTTTTTTTTCCTTCTAAAAA+AGG + chr5_1:20437679-20437698 Msa0722920:three_prime_UTR 15.0%
!! ATAATTTCAAGGTATGTTTA+TGG + chr5_1:20433015-20433034 Msa0722920:intron 20.0%
!!! CTGAATTATTATTATTTTGG+TGG + chr5_1:20433267-20433286 Msa0722920:intron 20.0%
!! TCTCCTTAAATTTGATTAAT+TGG - chr5_1:20433297-20433316 None:intergenic 20.0%
!!! TTGATAATTTTATTGGTTGT+GGG + chr5_1:20433454-20433473 Msa0722920:intron 20.0%
!!! CATACATCTCTTTTTTAATT+CGG + chr5_1:20433478-20433497 Msa0722920:intron 20.0%
!! TTTATAATATCTGACATGAT+AGG + chr5_1:20433548-20433567 Msa0722920:intron 20.0%
!! GATCATATGTTTCATATAAT+AGG + chr5_1:20433591-20433610 Msa0722920:intron 20.0%
!! TAAGGCCTATTTAATTAAAT+AGG + chr5_1:20434267-20434286 Msa0722920:intron 20.0%
!!! CATAAAATAGGCTTTTAAAT+AGG + chr5_1:20434561-20434580 Msa0722920:intron 20.0%
!! AATAAACTTATATAAGTCTG+AGG + chr5_1:20434879-20434898 Msa0722920:intron 20.0%
!! ATCCTTGATAAAAGAAAAAA+CGG - chr5_1:20435031-20435050 None:intergenic 20.0%
!!! TTAGTCTTAGTTTAGTTATT+TGG - chr5_1:20435422-20435441 None:intergenic 20.0%
!! ACAAAGAACTAAAAATTGTA+AGG + chr5_1:20435550-20435569 Msa0722920:intron 20.0%
!!! ACAAGGTTTAATAACATTTT+TGG - chr5_1:20435632-20435651 None:intergenic 20.0%
!!! AACCTTGTTTTTTAAAAACA+AGG + chr5_1:20435644-20435663 Msa0722920:intron 20.0%
!!! ACCTTGTTTTTTAAAAACAA+GGG + chr5_1:20435645-20435664 Msa0722920:intron 20.0%
!! TTAAAAACAAGGGTTTAAAA+AGG + chr5_1:20435655-20435674 Msa0722920:intron 20.0%
!! AAAAAAAAAAACATCCAAGA+AGG + chr5_1:20435733-20435752 Msa0722920:intron 20.0%
!!! TAGTAATGAAATTTTGAAAG+TGG - chr5_1:20435920-20435939 None:intergenic 20.0%
!!! TATTTTTTCTTGTATTTGCA+AGG - chr5_1:20435958-20435977 None:intergenic 20.0%
!!! TTAGTTGTGACATTTTATAA+AGG + chr5_1:20436087-20436106 Msa0722920:CDS 20.0%
!!! TAGTTGTGACATTTTATAAA+GGG + chr5_1:20436088-20436107 Msa0722920:CDS 20.0%
!! TGCCAATAAAAATATAGAAA+TGG + chr5_1:20436128-20436147 Msa0722920:CDS 20.0%
!! GCCAATAAAAATATAGAAAT+GGG + chr5_1:20436129-20436148 Msa0722920:CDS 20.0%
!!! TCCCATTTCTATATTTTTAT+TGG - chr5_1:20436133-20436152 None:intergenic 20.0%
!!! TAATATATAGTTTGTTTACC+TGG - chr5_1:20436251-20436270 None:intergenic 20.0%
!! ACATCAAAAACCTTTATATT+CGG - chr5_1:20436432-20436451 None:intergenic 20.0%
!!! AATTGTAGCTGTTTAAATTT+TGG + chr5_1:20436942-20436961 Msa0722920:intron 20.0%
! AAAATTGATGTTGAAATTGG+AGG - chr5_1:20432694-20432713 None:intergenic 25.0%
! CAGAAAATTGATGTTGAAAT+TGG - chr5_1:20432697-20432716 None:intergenic 25.0%
! TGAAATTATAGCAAGTATGA+AGG - chr5_1:20433004-20433023 None:intergenic 25.0%
!!! TCATACTTGCTATAATTTCA+AGG + chr5_1:20433004-20433023 Msa0722920:CDS 25.0%
! TGTTTATGGTTGAAATTACA+AGG + chr5_1:20433029-20433048 Msa0722920:intron 25.0%
!!! TTACAAGGTTTGTTGTTTTT+TGG + chr5_1:20433044-20433063 Msa0722920:intron 25.0%
! ACTATATCTCTTTCATAGAT+AGG + chr5_1:20433364-20433383 Msa0722920:intron 25.0%
!!! CTTGATAATTTTATTGGTTG+TGG + chr5_1:20433453-20433472 Msa0722920:intron 25.0%
! TTTCAAGATTGATATTAGCA+AGG + chr5_1:20433869-20433888 Msa0722920:intron 25.0%
! ATGAATAAATATGGGGATAA+CGG - chr5_1:20434068-20434087 None:intergenic 25.0%
! ATCCCCATATTTATTCATAT+TGG + chr5_1:20434070-20434089 Msa0722920:intron 25.0%
! CACCAATATGAATAAATATG+GGG - chr5_1:20434075-20434094 None:intergenic 25.0%
! CCACCAATATGAATAAATAT+GGG - chr5_1:20434076-20434095 None:intergenic 25.0%
! ACCACCAATATGAATAAATA+TGG - chr5_1:20434077-20434096 None:intergenic 25.0%
! CCTGACCTATTTAATTAAAT+AGG - chr5_1:20434275-20434294 None:intergenic 25.0%
! CCTATTTAATTAAATAGGTC+AGG + chr5_1:20434272-20434291 Msa0722920:intron 25.0%
! CTAAATAACCAATCATATGA+AGG - chr5_1:20434410-20434429 None:intergenic 25.0%
! AAATAGGCCAAAACTTATTA+AGG - chr5_1:20434508-20434527 None:intergenic 25.0%
!!! TAATAAGTTTTGGCCTATTT+AGG + chr5_1:20434508-20434527 Msa0722920:intron 25.0%
! ATATAAACCTACTCCTAAAT+AGG - chr5_1:20434524-20434543 None:intergenic 25.0%
!! TAAAAGCCTATTTTATGCTA+AGG - chr5_1:20434558-20434577 None:intergenic 25.0%
!! CACTATTCTTAAAACTTTTG+AGG + chr5_1:20434840-20434859 Msa0722920:intron 25.0%
!! TAAAGCTTTTAATCTTGCTA+CGG + chr5_1:20435289-20435308 Msa0722920:intron 25.0%
!!! AGTTCAATTTAGTTCTGATT+TGG - chr5_1:20435369-20435388 None:intergenic 25.0%
!! TCTATCAAAAAATGATGATG+CGG - chr5_1:20435522-20435541 None:intergenic 25.0%
!!! ACCCTTGTTTTTAAAAAACA+AGG - chr5_1:20435649-20435668 None:intergenic 25.0%
!!! GATATTTTTGAAAATCACCT+TGG - chr5_1:20435775-20435794 None:intergenic 25.0%
!! TGATAAAGCTTGAATACTTT+TGG + chr5_1:20435800-20435819 Msa0722920:intron 25.0%
!! GATAAAGCTTGAATACTTTT+GGG + chr5_1:20435801-20435820 Msa0722920:intron 25.0%
! TTATTGGCATCATTAATCAA+TGG - chr5_1:20436117-20436136 None:intergenic 25.0%
! ACATGCTTTATCATATCAAT+AGG + chr5_1:20436558-20436577 Msa0722920:intron 25.0%
! CATGCTTTATCATATCAATA+GGG + chr5_1:20436559-20436578 Msa0722920:intron 25.0%
! ATGCTTTATCATATCAATAG+GGG + chr5_1:20436560-20436579 Msa0722920:intron 25.0%
!!! CTGTTTAAATTTTGGTTTTG+TGG + chr5_1:20436950-20436969 Msa0722920:intron 25.0%
! TGTGGATATTCATTTAATCA+TGG + chr5_1:20436968-20436987 Msa0722920:intron 25.0%
! TTGAACATAGCTACATATAT+TGG - chr5_1:20437074-20437093 None:intergenic 25.0%
! AATGATGATTAATCCAAGAT+TGG + chr5_1:20437202-20437221 Msa0722920:intron 25.0%
! AAAAAAAAACTAGCCAATCT+TGG - chr5_1:20437218-20437237 None:intergenic 25.0%
!! AAACAAAAGCATGGATATAT+AGG + chr5_1:20437392-20437411 Msa0722920:CDS 25.0%
!!! TTTTTTCCTTCTAAAAAAGG+AGG + chr5_1:20437682-20437701 Msa0722920:three_prime_UTR 25.0%
!! AATAATTTGTTACGTCGGAT+CGG - chr5_1:20432372-20432391 None:intergenic 30.0%
GTGAGAATTAACAAGCAAAT+TGG + chr5_1:20432449-20432468 Msa0722920:five_prime_UTR 30.0%
GAAGAAAACATAGAGCTAAA+AGG - chr5_1:20432633-20432652 None:intergenic 30.0%
TTCTGTAGATTACTTCTTCT+TGG + chr5_1:20432712-20432731 Msa0722920:CDS 30.0%
TTTGGCAAAATAGAGTGATA+TGG + chr5_1:20432873-20432892 Msa0722920:intron 30.0%
ACTCATATGTTAATGACTTC+TGG + chr5_1:20432919-20432938 Msa0722920:CDS 30.0%
TAGAAGTCAACTAACTAAGA+TGG - chr5_1:20433519-20433538 None:intergenic 30.0%
AGTGGATCATATGTATAAGA+TGG + chr5_1:20433680-20433699 Msa0722920:intron 30.0%
TTTGGTTAAATGTGTGTTAG+AGG + chr5_1:20433737-20433756 Msa0722920:intron 30.0%
!! TGTTAGTTCTGCTACTTATT+CGG + chr5_1:20433980-20433999 Msa0722920:intron 30.0%
TGAATAAATATGGGGATAAC+GGG - chr5_1:20434067-20434086 None:intergenic 30.0%
CCCATATTTATTCATATTGG+TGG + chr5_1:20434073-20434092 Msa0722920:intron 30.0%
! TTTATTCATATTGGTGGTTG+AGG + chr5_1:20434079-20434098 Msa0722920:intron 30.0%
! TTATTCATATTGGTGGTTGA+GGG + chr5_1:20434080-20434099 Msa0722920:intron 30.0%
TTGATAGAGGTGATATTCAT+GGG + chr5_1:20434129-20434148 Msa0722920:intron 30.0%
TAATTAAATAGGTCAGGCTA+AGG + chr5_1:20434278-20434297 Msa0722920:intron 30.0%
AAAAAGTCTATTAAGCCCAT+CGG + chr5_1:20434307-20434326 Msa0722920:intron 30.0%
ATATGAAAAGCTTAATAGGC+CGG - chr5_1:20434334-20434353 None:intergenic 30.0%
CAAACATATTTGTGTGCTTT+AGG + chr5_1:20434482-20434501 Msa0722920:intron 30.0%
! CTTTAGGCCTTAATAAGTTT+TGG + chr5_1:20434498-20434517 Msa0722920:intron 30.0%
!! TTTTTCAGTCGTAATATGAG+TGG + chr5_1:20434904-20434923 Msa0722920:intron 30.0%
! TTTTCAGTCGTAATATGAGT+GGG + chr5_1:20434905-20434924 Msa0722920:intron 30.0%
TTATCTCTACCAATCATTGA+AGG - chr5_1:20435003-20435022 None:intergenic 30.0%
!!! GTCCGTTTTTTCTTTTATCA+AGG + chr5_1:20435026-20435045 Msa0722920:intron 30.0%
! AGAAGATGATCAATGTGTTT+TGG + chr5_1:20435195-20435214 Msa0722920:intron 30.0%
ATAAAATGCCCCAAAGAATT+TGG + chr5_1:20435245-20435264 Msa0722920:intron 30.0%
!! TAGTTCTGATTTGGATATGT+GGG - chr5_1:20435360-20435379 None:intergenic 30.0%
!! TTAGTTCTGATTTGGATATG+TGG - chr5_1:20435361-20435380 None:intergenic 30.0%
AAGACTAACGATAAATCAGA+AGG + chr5_1:20435434-20435453 Msa0722920:intron 30.0%
ATCAATTGTAACATCCAAGA+AGG + chr5_1:20435697-20435716 Msa0722920:intron 30.0%
!!! TTTTTTGGTACAAACCTTCT+TGG - chr5_1:20435714-20435733 None:intergenic 30.0%
! CAAGTGGAATTTTCCTTTTA+GGG + chr5_1:20436154-20436173 Msa0722920:CDS 30.0%
! CACAACGTGTAATTTAGAAT+CGG + chr5_1:20436533-20436552 Msa0722920:intron 30.0%
CAAGTCTGTATATACATAGA+TGG - chr5_1:20436604-20436623 None:intergenic 30.0%
CATCTATGTATATACAGACT+TGG + chr5_1:20436602-20436621 Msa0722920:intron 30.0%
AGCTGCCTATAAATGATTAA+AGG - chr5_1:20436997-20437016 None:intergenic 30.0%
TGAAGAATGTTATACACACA+TGG + chr5_1:20437030-20437049 Msa0722920:CDS 30.0%
GAAGAATGTTATACACACAT+GGG + chr5_1:20437031-20437050 Msa0722920:CDS 30.0%
! TATGTTCAAACCTTTAAGAG+TGG + chr5_1:20437085-20437104 Msa0722920:CDS 30.0%
! TTGGATTTTATGCTGTGATA+TGG + chr5_1:20437298-20437317 Msa0722920:CDS 30.0%
! TGGATTTTATGCTGTGATAT+GGG + chr5_1:20437299-20437318 Msa0722920:CDS 30.0%
GTGGTAGGTTATATTAAACA+TGG + chr5_1:20437440-20437459 Msa0722920:three_prime_UTR 30.0%
TGCATCTATGATCATTCTAA+TGG - chr5_1:20437591-20437610 None:intergenic 30.0%
!!! ACATAACCTCCTTTTTTAGA+AGG - chr5_1:20437691-20437710 None:intergenic 30.0%
ATGAAATCAGCCACAAAAGA+TGG + chr5_1:20432574-20432593 Msa0722920:CDS 35.0%
! AACACTCATTCCATCTTTTG+TGG - chr5_1:20432587-20432606 None:intergenic 35.0%
ATTGATGTTGAAATTGGAGG+AGG - chr5_1:20432691-20432710 None:intergenic 35.0%
CAAGTATGAAGGTAAAAGCA+GGG - chr5_1:20432993-20433012 None:intergenic 35.0%
! CTTAGTTAGTTGACTTCTAC+TGG + chr5_1:20433520-20433539 Msa0722920:intron 35.0%
!! GCTTTTGATACAGTGGATTT+GGG + chr5_1:20433891-20433910 Msa0722920:intron 35.0%
!! CTTTTGATACAGTGGATTTG+GGG + chr5_1:20433892-20433911 Msa0722920:intron 35.0%
GGTGCTTATGAACTTTGATA+AGG + chr5_1:20434001-20434020 Msa0722920:intron 35.0%
GCTTATGAACTTTGATAAGG+TGG + chr5_1:20434004-20434023 Msa0722920:intron 35.0%
! GTTGATAGAGGTGATATTCA+TGG + chr5_1:20434128-20434147 Msa0722920:intron 35.0%
TGATAGAGGTGATATTCATG+GGG + chr5_1:20434130-20434149 Msa0722920:intron 35.0%
ATATTCATGGGGTACAAGTA+GGG + chr5_1:20434141-20434160 Msa0722920:intron 35.0%
CCTTATAAAAAGCTTGAGTC+TGG - chr5_1:20434252-20434271 None:intergenic 35.0%
! CCAGACTCAAGCTTTTTATA+AGG + chr5_1:20434249-20434268 Msa0722920:intron 35.0%
AAAAGTCTATTAAGCCCATC+GGG + chr5_1:20434308-20434327 Msa0722920:intron 35.0%
GTAGGTTTATATGTGTTTCC+AGG + chr5_1:20434532-20434551 Msa0722920:intron 35.0%
! AGGCTTTTAAATAGGCTTTC+AGG + chr5_1:20434569-20434588 Msa0722920:intron 35.0%
TTCGTTTGCAAACAACAGAT+GGG - chr5_1:20434773-20434792 None:intergenic 35.0%
ATTCGTTTGCAAACAACAGA+TGG - chr5_1:20434774-20434793 None:intergenic 35.0%
!!! CGAATGTTTCTTGTTTTGCA+TGG + chr5_1:20434789-20434808 Msa0722920:intron 35.0%
!!! AAAACTTTTGAGGCAACATC+TGG + chr5_1:20434850-20434869 Msa0722920:intron 35.0%
TTTCAGTCGTAATATGAGTG+GGG + chr5_1:20434906-20434925 Msa0722920:intron 35.0%
!! ATGGGTACTGGAAAGTATTT+GGG + chr5_1:20434973-20434992 Msa0722920:intron 35.0%
TTGGGATTACCTTCAATGAT+TGG + chr5_1:20434991-20435010 Msa0722920:intron 35.0%
CAATGATTGGTAGAGATAAG+AGG + chr5_1:20435004-20435023 Msa0722920:intron 35.0%
! CTTTTATCAAGGATCGTATC+TGG + chr5_1:20435037-20435056 Msa0722920:intron 35.0%
!! AGATGATCAATGTGTTTTGG+TGG + chr5_1:20435198-20435217 Msa0722920:intron 35.0%
!!! GATGATCAATGTGTTTTGGT+GGG + chr5_1:20435199-20435218 Msa0722920:intron 35.0%
!!! ATGATCAATGTGTTTTGGTG+GGG + chr5_1:20435200-20435219 Msa0722920:intron 35.0%
!! AGTTCTGATTTGGATATGTG+GGG - chr5_1:20435359-20435378 None:intergenic 35.0%
TCTAGTATCAAACACCTTCT+TGG - chr5_1:20435750-20435769 None:intergenic 35.0%
! GAAAGTGGACATTTTGTTAC+CGG - chr5_1:20435905-20435924 None:intergenic 35.0%
! ATACTGTGATGTGCATTTTC+AGG + chr5_1:20435989-20436008 Msa0722920:intron 35.0%
AATATAGAAATGGGAGCAAG+TGG + chr5_1:20436138-20436157 Msa0722920:CDS 35.0%
! GCAAGTGGAATTTTCCTTTT+AGG + chr5_1:20436153-20436172 Msa0722920:CDS 35.0%
!! TCCTTTTAGGGAAATCAGAT+TGG + chr5_1:20436166-20436185 Msa0722920:CDS 35.0%
TCCAATCTGATTTCCCTAAA+AGG - chr5_1:20436170-20436189 None:intergenic 35.0%
GGGAAATCAGATTGGATAAT+TGG + chr5_1:20436174-20436193 Msa0722920:CDS 35.0%
TTCTCTTCTGTTTATTGTCC+AGG + chr5_1:20436230-20436249 Msa0722920:CDS 35.0%
AAGAGAACCACAAGTAAATG+TGG + chr5_1:20436318-20436337 Msa0722920:intron 35.0%
GACCATAATTAAATCCGCAT+CGG - chr5_1:20436344-20436363 None:intergenic 35.0%
CAAAATCGTAGTTGCAATTG+CGG + chr5_1:20436406-20436425 Msa0722920:intron 35.0%
TATCACAATAGCTGTTGCAT+TGG + chr5_1:20436463-20436482 Msa0722920:intron 35.0%
TGAATGTTGCCACAATACAA+TGG + chr5_1:20436497-20436516 Msa0722920:intron 35.0%
ATATACAGACTTGGATTGTC+AGG + chr5_1:20436611-20436630 Msa0722920:intron 35.0%
TATACAGACTTGGATTGTCA+GGG + chr5_1:20436612-20436631 Msa0722920:intron 35.0%
TACCACAAAACAGCAACAAA+TGG - chr5_1:20436665-20436684 None:intergenic 35.0%
ACAGATAGCAACTGTTTATC+AGG - chr5_1:20436748-20436767 None:intergenic 35.0%
GGCTGCCTTTAATCATTTAT+AGG + chr5_1:20436989-20437008 Msa0722920:intron 35.0%
! TCATTTATAGGCAGCTTTTG+TGG + chr5_1:20437001-20437020 Msa0722920:intron 35.0%
! TAGCATGGGGGTTATATTTT+TGG + chr5_1:20437118-20437137 Msa0722920:CDS 35.0%
! AGCATGGGGGTTATATTTTT+GGG + chr5_1:20437119-20437138 Msa0722920:CDS 35.0%
TTGGGAGACAATCTTTATCT+TGG + chr5_1:20437137-20437156 Msa0722920:CDS 35.0%
GAGACAATCTTTATCTTGGA+AGG + chr5_1:20437141-20437160 Msa0722920:CDS 35.0%
!! TGCTTTTGTTTGACAACAGA+GGG - chr5_1:20437383-20437402 None:intergenic 35.0%
!! ATGCTTTTGTTTGACAACAG+AGG - chr5_1:20437384-20437403 None:intergenic 35.0%
TCTGTTGTCAAACAAAAGCA+TGG + chr5_1:20437383-20437402 Msa0722920:CDS 35.0%
! CAAAAGCATGGATATATAGG+AGG + chr5_1:20437395-20437414 Msa0722920:exon 35.0%
!!! ACGGAGACTATGCTTTTTTA+AGG + chr5_1:20437418-20437437 Msa0722920:three_prime_UTR 35.0%
!!! GAGACTATGCTTTTTTAAGG+TGG + chr5_1:20437421-20437440 Msa0722920:three_prime_UTR 35.0%
!!! CTATGCTTTTTTAAGGTGGT+AGG + chr5_1:20437425-20437444 Msa0722920:three_prime_UTR 35.0%
CAGACAGAGACAAGCAAAAA+TGG + chr5_1:20432480-20432499 Msa0722920:exon 40.0%
!! TTTTCTATGGTGGAAGAGAG+TGG - chr5_1:20432662-20432681 None:intergenic 40.0%
TAAATTCAGTTCTCCCACGT+TGG + chr5_1:20432945-20432964 Msa0722920:CDS 40.0%
GCAAGTATGAAGGTAAAAGC+AGG - chr5_1:20432994-20433013 None:intergenic 40.0%
TCATAGATAGGATACGTTCC+CGG + chr5_1:20433376-20433395 Msa0722920:intron 40.0%
AGAAAAGACAAGCTTCCTAC+CGG - chr5_1:20433398-20433417 None:intergenic 40.0%
TAATCGACTGAAACGGTGTT+TGG + chr5_1:20433719-20433738 Msa0722920:intron 40.0%
! TAGCAAGGCTTTTGATACAG+TGG + chr5_1:20433884-20433903 Msa0722920:intron 40.0%
!! GGCTTTTGATACAGTGGATT+TGG + chr5_1:20433890-20433909 Msa0722920:intron 40.0%
TAACACACATCATCATCCAC+TGG - chr5_1:20433965-20433984 None:intergenic 40.0%
GATATTCATGGGGTACAAGT+AGG + chr5_1:20434140-20434159 Msa0722920:intron 40.0%
TATTCATGGGGTACAAGTAG+GGG + chr5_1:20434142-20434161 Msa0722920:intron 40.0%
! GCCTTGTTAATAAACGAGCT+GGG - chr5_1:20434230-20434249 None:intergenic 40.0%
CATATGAAGGCTCGTGTTTA+TGG - chr5_1:20434397-20434416 None:intergenic 40.0%
AACACGAGCCTTCATATGAT+TGG + chr5_1:20434399-20434418 Msa0722920:intron 40.0%
!! GTTTTGGCCTATTTAGGAGT+AGG + chr5_1:20434514-20434533 Msa0722920:intron 40.0%
TCCAGGCCTTAGCATAAAAT+AGG + chr5_1:20434549-20434568 Msa0722920:intron 40.0%
! GCTTCATCAGGCCTTTAAAA+AGG + chr5_1:20434591-20434610 Msa0722920:intron 40.0%
! ATCAGGCCTTTAAAAAGGTC+AGG + chr5_1:20434596-20434615 Msa0722920:intron 40.0%
TGGCCTACTTCAAAAATGCT+AGG - chr5_1:20434669-20434688 None:intergenic 40.0%
!!! TAGCATTTTTGAAGTAGGCC+AGG + chr5_1:20434668-20434687 Msa0722920:intron 40.0%
!!! CTTGTTTTGCATGGTCAATG+TGG + chr5_1:20434798-20434817 Msa0722920:intron 40.0%
GAGGATTTGTCACGCATTAT+TGG + chr5_1:20434937-20434956 Msa0722920:intron 40.0%
! TATTGGTGTCCAACATGTGA+TGG + chr5_1:20434954-20434973 Msa0722920:intron 40.0%
! ATTGGTGTCCAACATGTGAT+GGG + chr5_1:20434955-20434974 Msa0722920:intron 40.0%
!! GATGGGTACTGGAAAGTATT+TGG + chr5_1:20434972-20434991 Msa0722920:intron 40.0%
TCTGGAAACGAATAAATGCG+TGG + chr5_1:20435055-20435074 Msa0722920:intron 40.0%
GAAACGAATAAATGCGTGGA+GGG + chr5_1:20435059-20435078 Msa0722920:intron 40.0%
AAACGAATAAATGCGTGGAG+GGG + chr5_1:20435060-20435079 Msa0722920:intron 40.0%
AAATGCCCCAAAGAATTTGG+TGG + chr5_1:20435248-20435267 Msa0722920:intron 40.0%
CCATTCCACCAAATTCTTTG+GGG - chr5_1:20435256-20435275 None:intergenic 40.0%
CCCATTCCACCAAATTCTTT+GGG - chr5_1:20435257-20435276 None:intergenic 40.0%
! CCCAAAGAATTTGGTGGAAT+GGG + chr5_1:20435254-20435273 Msa0722920:intron 40.0%
ACCCATTCCACCAAATTCTT+TGG - chr5_1:20435258-20435277 None:intergenic 40.0%
GTGTTTGATACTAGAGACCA+AGG + chr5_1:20435755-20435774 Msa0722920:intron 40.0%
CTATGACTCTGATTGTGATC+CGG + chr5_1:20435883-20435902 Msa0722920:intron 40.0%
!! TGTGATGTGCATTTTCAGGA+TGG + chr5_1:20435993-20436012 Msa0722920:intron 40.0%
! TATGAAAAAGCATAGCAGCC+AGG + chr5_1:20436026-20436045 Msa0722920:CDS 40.0%
TGTTGCGAACCATTGTATTG+TGG - chr5_1:20436509-20436528 None:intergenic 40.0%
! GTGTTTATCACTAGCTCTTC+TGG - chr5_1:20436643-20436662 None:intergenic 40.0%
!!! CACCATTTGTTGCTGTTTTG+TGG + chr5_1:20436660-20436679 Msa0722920:CDS 40.0%
ATTGTAGCTCTCATTGCAGA+GGG + chr5_1:20436697-20436716 Msa0722920:CDS 40.0%
CAGAGGGAAATTCAAATGCT+TGG + chr5_1:20436713-20436732 Msa0722920:CDS 40.0%
ACATGGGCATGTCATAAGAA+AGG + chr5_1:20437047-20437066 Msa0722920:CDS 40.0%
AGTGCAATGACCACTCTTAA+AGG - chr5_1:20437098-20437117 None:intergenic 40.0%
ACTTATTGGTGCAGCTTGAT+TGG + chr5_1:20437258-20437277 Msa0722920:intron 40.0%
GGAGCTGCTATCATAGTTAT+TGG + chr5_1:20437279-20437298 Msa0722920:CDS 40.0%
!! GCTTTTGTTTGACAACAGAG+GGG - chr5_1:20437382-20437401 None:intergenic 40.0%
AGCATGGATATATAGGAGGA+CGG + chr5_1:20437399-20437418 Msa0722920:exon 40.0%
TATTAGTCCGGCTAGACTTG+AGG + chr5_1:20432394-20432413 Msa0722920:five_prime_UTR 45.0%
TCCTTATCCTCAAGTCTAGC+CGG - chr5_1:20432404-20432423 None:intergenic 45.0%
AGACAAGCAAAAATGGCGAG+TGG + chr5_1:20432487-20432506 Msa0722920:exon 45.0%
TGCAGCTCAAATCGTTGAAG+TGG + chr5_1:20432537-20432556 Msa0722920:CDS 45.0%
GCAGCTCAAATCGTTGAAGT+GGG + chr5_1:20432538-20432557 Msa0722920:CDS 45.0%
! GAGGAGCTCTTTTTCTATGG+TGG - chr5_1:20432672-20432691 None:intergenic 45.0%
! GAGGAGGAGCTCTTTTTCTA+TGG - chr5_1:20432675-20432694 None:intergenic 45.0%
ACAATAGCTGAAGCCAACGT+GGG - chr5_1:20432961-20432980 None:intergenic 45.0%
AACAATAGCTGAAGCCAACG+TGG - chr5_1:20432962-20432981 None:intergenic 45.0%
GAAAAGACAAGCTTCCTACC+GGG - chr5_1:20433397-20433416 None:intergenic 45.0%
TGCTCGCTAATCGACTGAAA+CGG + chr5_1:20433712-20433731 Msa0722920:intron 45.0%
TGTTGAGGTCCACTCTATAC+TGG + chr5_1:20433773-20433792 Msa0722920:intron 45.0%
ACGTGTTGTCCAGTATAGAG+TGG - chr5_1:20433785-20433804 None:intergenic 45.0%
!! CTTCGTTGAGTGGATTGTCT+TGG - chr5_1:20433817-20433836 None:intergenic 45.0%
AGACAATCCACTCAACGAAG+AGG + chr5_1:20433817-20433836 Msa0722920:intron 45.0%
TCAACGAAGAGGAAGTCGAA+GGG + chr5_1:20433828-20433847 Msa0722920:intron 45.0%
! GTGGATTTGGGGTTTCTTCA+TGG + chr5_1:20433903-20433922 Msa0722920:intron 45.0%
CATGGTGTGCTTATGCGAAT+TGG + chr5_1:20433921-20433940 Msa0722920:intron 45.0%
GTGCTTATGCGAATTGGAGT+CGG + chr5_1:20433927-20433946 Msa0722920:intron 45.0%
GAATTGGAGTCGGTGAGAAA+TGG + chr5_1:20433937-20433956 Msa0722920:intron 45.0%
CCTTGTGTATTAGAGTCGAG+AGG - chr5_1:20434106-20434125 None:intergenic 45.0%
CCTCTCGACTCTAATACACA+AGG + chr5_1:20434103-20434122 Msa0722920:intron 45.0%
CTCGACTCTAATACACAAGG+CGG + chr5_1:20434106-20434125 Msa0722920:intron 45.0%
!! ATACACAAGGCGGTTGATAG+AGG + chr5_1:20434116-20434135 Msa0722920:intron 45.0%
CTTTAAATAGGCTAGGCCGT+AGG - chr5_1:20434197-20434216 None:intergenic 45.0%
!! AGCTGGGCTTTAAATAGGCT+AGG - chr5_1:20434204-20434223 None:intergenic 45.0%
! AGCCTATTTAAAGCCCAGCT+CGG + chr5_1:20434204-20434223 Msa0722920:intron 45.0%
GCCCAGCTCGTTTATTAACA+AGG + chr5_1:20434226-20434245 Msa0722920:intron 45.0%
!! GGCCTTGTTAATAAACGAGC+TGG - chr5_1:20434231-20434250 None:intergenic 45.0%
! GCCTATTTTATGCTAAGGCC+TGG - chr5_1:20434553-20434572 None:intergenic 45.0%
ATAGGCTTTCAGGCTTCATC+AGG + chr5_1:20434579-20434598 Msa0722920:intron 45.0%
! GCCTTTAAAAAGGTCAGGTC+AGG + chr5_1:20434601-20434620 Msa0722920:intron 45.0%
! GCCTGACCTGACCTTTTTAA+AGG - chr5_1:20434605-20434624 None:intergenic 45.0%
CCTCGAAAATGAGCCTATGA+CGG + chr5_1:20434624-20434643 Msa0722920:intron 45.0%
CTCGAAAATGAGCCTATGAC+GGG + chr5_1:20434625-20434644 Msa0722920:intron 45.0%
!! ATGAGCCTATGACGGGTAAT+AGG + chr5_1:20434632-20434651 Msa0722920:intron 45.0%
!!! GGGCCTAGCATTTTTGAAGT+AGG + chr5_1:20434663-20434682 Msa0722920:intron 45.0%
!!! TTTTGAAGTAGGCCAGGCTT+AGG + chr5_1:20434674-20434693 Msa0722920:intron 45.0%
TTGTACCTAGGGGTGGAAAT+GGG - chr5_1:20434725-20434744 None:intergenic 45.0%
AACTTACTTGTACCTAGGGG+TGG - chr5_1:20434732-20434751 None:intergenic 45.0%
CGCAACTTACTTGTACCTAG+GGG - chr5_1:20434735-20434754 None:intergenic 45.0%
CCGCAACTTACTTGTACCTA+GGG - chr5_1:20434736-20434755 None:intergenic 45.0%
CCCTAGGTACAAGTAAGTTG+CGG + chr5_1:20434733-20434752 Msa0722920:intron 45.0%
! GTTTTGCATGGTCAATGTGG+TGG + chr5_1:20434801-20434820 Msa0722920:intron 45.0%
TTCCAGTACCCATCACATGT+TGG - chr5_1:20434966-20434985 None:intergenic 45.0%
GGAAACGAATAAATGCGTGG+AGG + chr5_1:20435058-20435077 Msa0722920:intron 45.0%
!!! ATCAATGTGTTTTGGTGGGG+AGG + chr5_1:20435203-20435222 Msa0722920:intron 45.0%
!!! CTTTGGGGCATTTTATCTCG+CGG - chr5_1:20435241-20435260 None:intergenic 45.0%
! CCCCAAAGAATTTGGTGGAA+TGG + chr5_1:20435253-20435272 Msa0722920:intron 45.0%
! AGCGATTTTCGTATGAGCTG+AGG + chr5_1:20435320-20435339 Msa0722920:intron 45.0%
! TGATTTGGATATGTGGGGCT+GGG - chr5_1:20435354-20435373 None:intergenic 45.0%
AGCAGCCAGGCAAAAGTTAT+TGG + chr5_1:20436039-20436058 Msa0722920:CDS 45.0%
! CTGTGCCAATAACTTTTGCC+TGG - chr5_1:20436047-20436066 None:intergenic 45.0%
GGCAAAAGTTATTGGCACAG+TGG + chr5_1:20436047-20436066 Msa0722920:CDS 45.0%
ACAAGTAAATGTGGCCGATG+CGG + chr5_1:20436327-20436346 Msa0722920:intron 45.0%
GGCCGATGCGGATTTAATTA+TGG + chr5_1:20436339-20436358 Msa0722920:intron 45.0%
GCAATTGCGGCCGAATATAA+AGG + chr5_1:20436419-20436438 Msa0722920:intron 45.0%
CTCTGCAATGAGAGCTACAA+TGG - chr5_1:20436698-20436717 None:intergenic 45.0%
CATTGTAGCTCTCATTGCAG+AGG + chr5_1:20436696-20436715 Msa0722920:CDS 45.0%
AGTGGTCATTGCACTTAGCA+TGG + chr5_1:20437103-20437122 Msa0722920:CDS 45.0%
GTGGTCATTGCACTTAGCAT+GGG + chr5_1:20437104-20437123 Msa0722920:CDS 45.0%
TGGTCATTGCACTTAGCATG+GGG + chr5_1:20437105-20437124 Msa0722920:CDS 45.0%
GATATGGGCACAAACTCAAG+AGG + chr5_1:20437314-20437333 Msa0722920:CDS 45.0%
!! TTATTATCATTATTATTATT+AGG + chr5_1:20436791-20436810 Msa0722920:intron 5.0%
!!! TATATTTTTTTTTATCAAAA+AGG + chr5_1:20437514-20437533 Msa0722920:three_prime_UTR 5.0%
TCCGGCTAGACTTGAGGATA+AGG + chr5_1:20432400-20432419 Msa0722920:five_prime_UTR 50.0%
CAAGCAAAAATGGCGAGTGG+AGG + chr5_1:20432490-20432509 Msa0722920:exon 50.0%
GCTCAAATCGTTGAAGTGGG+TGG + chr5_1:20432541-20432560 Msa0722920:CDS 50.0%
! CTATGGTGGAAGAGAGTGGA+TGG - chr5_1:20432658-20432677 None:intergenic 50.0%
AGATAGGATACGTTCCCGGT+AGG + chr5_1:20433380-20433399 Msa0722920:intron 50.0%
! GGAGCAGTCAGTGTTTGTTG+AGG + chr5_1:20433758-20433777 Msa0722920:intron 50.0%
TCGACTTCCTCTTCGTTGAG+TGG - chr5_1:20433827-20433846 None:intergenic 50.0%
CTCAACGAAGAGGAAGTCGA+AGG + chr5_1:20433827-20433846 Msa0722920:intron 50.0%
GAAGGGATGGAGAGAGGAAT+TGG + chr5_1:20433845-20433864 Msa0722920:intron 50.0%
TCGGTGAGAAATGGATCCAG+TGG + chr5_1:20433946-20433965 Msa0722920:intron 50.0%
AGCCTATTGAACCCAGCCAA+GGG + chr5_1:20434027-20434046 Msa0722920:intron 50.0%
AACCCTTGGCTGGGTTCAAT+AGG - chr5_1:20434032-20434051 None:intergenic 50.0%
GTACAAGTAGGGGTGGGAAT+AGG + chr5_1:20434152-20434171 Msa0722920:intron 50.0%
! CCGTCATAGGCTCATTTTCG+AGG - chr5_1:20434627-20434646 None:intergenic 50.0%
GACTTTGTAAGGCCTAAGCC+TGG - chr5_1:20434689-20434708 None:intergenic 50.0%
GGCTTAGGCCTTACAAAGTC+CGG + chr5_1:20434689-20434708 Msa0722920:intron 50.0%
CTTGTACCTAGGGGTGGAAA+TGG - chr5_1:20434726-20434745 None:intergenic 50.0%
GCCGCAACTTACTTGTACCT+AGG - chr5_1:20434737-20434756 None:intergenic 50.0%
AACAACAGATGGGACACCAC+TGG - chr5_1:20434763-20434782 None:intergenic 50.0%
CAGTCGTAATATGAGTGGGG+CGG + chr5_1:20434909-20434928 Msa0722920:intron 50.0%
!! GTCCAACATGTGATGGGTAC+TGG + chr5_1:20434961-20434980 Msa0722920:intron 50.0%
! GACGAGCATTGTCGAAGGAA+GGG + chr5_1:20435082-20435101 Msa0722920:intron 50.0%
AGCATTGTCGAAGGAAGGGA+AGG + chr5_1:20435086-20435105 Msa0722920:intron 50.0%
!!! ATGTGTTTTGGTGGGGAGGA+AGG + chr5_1:20435207-20435226 Msa0722920:intron 50.0%
!! CTGATTTGGATATGTGGGGC+TGG - chr5_1:20435355-20435374 None:intergenic 50.0%
GCACAGTGGTCTCTATTGCA+GGG + chr5_1:20436061-20436080 Msa0722920:CDS 50.0%
CACAGTGGTCTCTATTGCAG+GGG + chr5_1:20436062-20436081 Msa0722920:CDS 50.0%
! GGTGCTTTTCTTCTTGCAGC+TGG + chr5_1:20436195-20436214 Msa0722920:CDS 50.0%
! GCATCGGCCACATTTACTTG+TGG - chr5_1:20436328-20436347 None:intergenic 50.0%
GGTCATTGCACTTAGCATGG+GGG + chr5_1:20437106-20437125 Msa0722920:CDS 50.0%
CGAAGAGGAAGTCGAAGGGA+TGG + chr5_1:20433832-20433851 Msa0722920:intron 55.0%
GAAGTCGAAGGGATGGAGAG+AGG + chr5_1:20433839-20433858 Msa0722920:intron 55.0%
GAGCCTATTGAACCCAGCCA+AGG + chr5_1:20434026-20434045 Msa0722920:intron 55.0%
TCATGGGGTACAAGTAGGGG+TGG + chr5_1:20434145-20434164 Msa0722920:intron 55.0%
CATGGGGTACAAGTAGGGGT+GGG + chr5_1:20434146-20434165 Msa0722920:intron 55.0%
!! GGCCGAGCTGGGCTTTAAAT+AGG - chr5_1:20434209-20434228 None:intergenic 55.0%
GTCTATTAAGCCCATCGGGC+CGG + chr5_1:20434312-20434331 Msa0722920:intron 55.0%
CCTGGCCTATTACCCGTCAT+AGG - chr5_1:20434640-20434659 None:intergenic 55.0%
!! CCTATGACGGGTAATAGGCC+AGG + chr5_1:20434637-20434656 Msa0722920:intron 55.0%
AAAAATGCTAGGCCCGAGCC+TGG - chr5_1:20434658-20434677 None:intergenic 55.0%
! GGACGAGCATTGTCGAAGGA+AGG + chr5_1:20435081-20435100 Msa0722920:intron 55.0%
GGCACAGTGGTCTCTATTGC+AGG + chr5_1:20436060-20436079 Msa0722920:CDS 55.0%
!! ATGGGGATAACGGGTCACCC+TGG - chr5_1:20434058-20434077 None:intergenic 60.0%
AGTAGGGGTGGGAATAGGCC+AGG + chr5_1:20434157-20434176 Msa0722920:intron 60.0%
TAAACGAGCTGGGCCGAGCT+GGG - chr5_1:20434220-20434239 None:intergenic 60.0%
ATAAACGAGCTGGGCCGAGC+TGG - chr5_1:20434221-20434240 None:intergenic 60.0%
GCTTAATAGGCCGGCCCGAT+GGG - chr5_1:20434325-20434344 None:intergenic 60.0%
AGCTTAATAGGCCGGCCCGA+TGG - chr5_1:20434326-20434345 None:intergenic 60.0%
GACGGGTAATAGGCCAGGCT+CGG + chr5_1:20434642-20434661 Msa0722920:intron 60.0%
ACGGGTAATAGGCCAGGCTC+GGG + chr5_1:20434643-20434662 Msa0722920:intron 60.0%
AGGCCTTACAAAGTCCGGCC+CGG + chr5_1:20434694-20434713 Msa0722920:intron 60.0%
! CCTAGGGGTGGAAATGGGCT+AGG - chr5_1:20434720-20434739 None:intergenic 60.0%
CCTAGCCCATTTCCACCCCT+AGG + chr5_1:20434717-20434736 Msa0722920:intron 60.0%
AGTAAGTTGCGGCGCACCAG+TGG + chr5_1:20434744-20434763 Msa0722920:intron 60.0%
! GAGGGGACGAGCATTGTCGA+AGG + chr5_1:20435077-20435096 Msa0722920:intron 60.0%
AATAGGCCAGGCCGTCCGAC+AGG + chr5_1:20434169-20434188 Msa0722920:intron 65.0%
ATAGGCCAGGCCGTCCGACA+GGG + chr5_1:20434170-20434189 Msa0722920:intron 65.0%
GCTAGGCCGTAGGTCCCTGT+CGG - chr5_1:20434187-20434206 None:intergenic 65.0%
AGGCCGGGCCGGACTTTGTA+AGG - chr5_1:20434700-20434719 None:intergenic 65.0%
!! GGGTGGAAATGGGCTAGGCC+GGG - chr5_1:20434715-20434734 None:intergenic 65.0%
!! GGGGTGGAAATGGGCTAGGC+CGG - chr5_1:20434716-20434735 None:intergenic 65.0%
TATGAGTGGGGCGGCGCAAG+AGG + chr5_1:20434918-20434937 Msa0722920:intron 65.0%
ACCCAGCCAAGGGTTGCGCC+AGG + chr5_1:20434037-20434056 Msa0722920:intron 70.0%
CCCTGGCGCAACCCTTGGCT+GGG - chr5_1:20434041-20434060 None:intergenic 70.0%
CCCAGCCAAGGGTTGCGCCA+GGG + chr5_1:20434038-20434057 Msa0722920:intron 70.0%
ACCCTGGCGCAACCCTTGGC+TGG - chr5_1:20434042-20434061 None:intergenic 70.0%
GGTCACCCTGGCGCAACCCT+TGG - chr5_1:20434046-20434065 None:intergenic 70.0%
TAGGTCCCTGTCGGACGGCC+TGG - chr5_1:20434178-20434197 None:intergenic 70.0%
GGCCGTCCGACAGGGACCTA+CGG + chr5_1:20434178-20434197 Msa0722920:intron 70.0%
GGCCGTAGGTCCCTGTCGGA+CGG - chr5_1:20434183-20434202 None:intergenic 70.0%
!! GGAAATGGGCTAGGCCGGGC+CGG - chr5_1:20434711-20434730 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 20432367 20437727 20432367 ID=Msa0722920;Name=Msa0722920
chr5_1 mRNA 20432367 20437727 20432367 ID=Msa0722920-mRNA-1;Parent=Msa0722920;Name=Msa0722920-mRNA-1;_AED=0.37;_eAED=0.37;_QI=132|1|1|1|1|1|6|314|350
chr5_1 exon 20432367 20432743 20432367 ID=Msa0722920-mRNA-1:exon:7763;Parent=Msa0722920-mRNA-1
chr5_1 exon 20432912 20433025 20432912 ID=Msa0722920-mRNA-1:exon:7764;Parent=Msa0722920-mRNA-1
chr5_1 exon 20436011 20436251 20436011 ID=Msa0722920-mRNA-1:exon:7765;Parent=Msa0722920-mRNA-1
chr5_1 exon 20436619 20436777 20436619 ID=Msa0722920-mRNA-1:exon:7766;Parent=Msa0722920-mRNA-1
chr5_1 exon 20437011 20437162 20437011 ID=Msa0722920-mRNA-1:exon:7767;Parent=Msa0722920-mRNA-1
chr5_1 exon 20437272 20437727 20437272 ID=Msa0722920-mRNA-1:exon:7768;Parent=Msa0722920-mRNA-1
chr5_1 five_prime_UTR 20432367 20432498 20432367 ID=Msa0722920-mRNA-1:five_prime_utr;Parent=Msa0722920-mRNA-1
chr5_1 CDS 20432499 20432743 20432499 ID=Msa0722920-mRNA-1:cds;Parent=Msa0722920-mRNA-1
chr5_1 CDS 20432912 20433025 20432912 ID=Msa0722920-mRNA-1:cds;Parent=Msa0722920-mRNA-1
chr5_1 CDS 20436011 20436251 20436011 ID=Msa0722920-mRNA-1:cds;Parent=Msa0722920-mRNA-1
chr5_1 CDS 20436619 20436777 20436619 ID=Msa0722920-mRNA-1:cds;Parent=Msa0722920-mRNA-1
chr5_1 CDS 20437011 20437162 20437011 ID=Msa0722920-mRNA-1:cds;Parent=Msa0722920-mRNA-1
chr5_1 CDS 20437272 20437413 20437272 ID=Msa0722920-mRNA-1:cds;Parent=Msa0722920-mRNA-1
chr5_1 three_prime_UTR 20437414 20437727 20437414 ID=Msa0722920-mRNA-1:three_prime_utr;Parent=Msa0722920-mRNA-1
Gene Sequence

>Msa0722920

ATGGCGAGTGGAGGAGCAAGTGTAACAACAACAATGATTGCAGCTCAAATCGTTGAAGTGGGTGGTGAAACTCTAATGAAATCAGCCACAAAAGATGGAATGAGTGTTTTTATTTTCATTGTTTACACAAACCTTTTAGCTCTATGTTTTCTTCTACCATCCACTCTCTTCCACCATAGAAAAAGAGCTCCTCCTCCAATTTCAACATCAATTTTCTGTAGATTACTTCTTCTTGGTTGCATCAAAACTGCAACTCATATGTTAATGACTTCTGGAATTAAATTCAGTTCTCCCACGTTGGCTTCAGCTATTGTTAATCTTGTCCCTGCTTTTACCTTCATACTTGCTATAATTTCAAGGATGGAAGTTCTAAATATGAAAAAGCATAGCAGCCAGGCAAAAGTTATTGGCACAGTGGTCTCTATTGCAGGGGCATTAGTTGTGACATTTTATAAAGGGATACCATTGATTAATGATGCCAATAAAAATATAGAAATGGGAGCAAGTGGAATTTTCCTTTTAGGGAAATCAGATTGGATAATTGGTGCTTTTCTTCTTGCAGCTGGTAGCTTTTGTCTTTCTCTTCTGTTTATTGTCCAGACTTGGATTGTCAGGGATTATCCAGAAGAGCTAGTGATAAACACCATTTGTTGCTGTTTTGTGGTAATCATATCTACCATTGTAGCTCTCATTGCAGAGGGAAATTCAAATGCTTGGAGACTCAGACCTGATAAACAGTTGCTATCTGTTGTTTACTCAGCAGCTTTTGTGGAATCATTGAAGAATGTTATACACACATGGGCATGTCATAAGAAAGGACCAATATATGTAGCTATGTTCAAACCTTTAAGAGTGGTCATTGCACTTAGCATGGGGGTTATATTTTTGGGAGACAATCTTTATCTTGGAAGCTTGATTGGAGCTGCTATCATAGTTATTGGATTTTATGCTGTGATATGGGCACAAACTCAAGAGGAACACATAACAAGTGAAAATAACATTTTGTCATCTTCTTCAGCCCCTCTGTTGTCAAACAAAAGCATGGATATATAG
Protein sequence

>Msa0722920

MASGGASVTTTMIAAQIVEVGGETLMKSATKDGMSVFIFIVYTNLLALCFLLPSTLFHHRKRAPPPISTSIFCRLLLLGCIKTATHMLMTSGIKFSSPTLASAIVNLVPAFTFILAIISRMEVLNMKKHSSQAKVIGTVVSIAGALVVTFYKGIPLINDANKNIEMGASGIFLLGKSDWIIGAFLLAAGSFCLSLLFIVQTWIVRDYPEELVINTICCCFVVIISTIVALIAEGNSNAWRLRPDKQLLSVVYSAAFVESLKNVIHTWACHKKGPIYVAMFKPLRVVIALSMGVIFLGDNLYLGSLIGAAIIVIGFYAVIWAQTQEEHITSENNILSSSSAPLLSNKSMDI*