Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387500 | XP_003597387.1 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387500 | sp|Q94DG6|ZIP1_ORYSJ | 58.434 | 332 | 118 | 4 | 21 | 335 | 24 | 352 | 5.99e-137 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387500 | Q9AWG7 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0111780 | Msa0387500 | 0.811153 | 8.073155e-51 | -8.615850e-47 |
| Msa0227420 | Msa0387500 | 0.993318 | 6.548256e-199 | -8.615850e-47 |
| Msa0366230 | Msa0387500 | 0.803108 | 4.079937e-49 | -8.615850e-47 |
| Msa0387500 | Msa0570600 | 0.827774 | 1.299082e-54 | -8.615850e-47 |
| Msa0387500 | Msa0655200 | 0.817045 | 4.041710e-52 | -8.615850e-47 |
| Msa0387500 | Msa0832950 | 0.805515 | 1.286289e-49 | -8.615850e-47 |
| Msa0387500 | Msa0935840 | -0.806491 | 8.017923e-50 | -8.615850e-47 |
| Msa0387500 | Msa1008360 | 0.818499 | 1.898388e-52 | -8.615850e-47 |
| Msa0387500 | Msa1049970 | 0.814074 | 1.853738e-51 | -8.615850e-47 |
| Msa0387500 | Msa1432850 | 0.990575 | 2.739088e-183 | -8.615850e-47 |
| Msa0259930 | Msa0387500 | 0.990109 | 4.218319e-181 | -8.615850e-47 |
| Msa0339800 | Msa0387500 | 0.984773 | 1.516266e-161 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387500 | MtrunA17_Chr2g0328511 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Msa0387500 | MtrunA17_Chr3g0102071 | 57.980 | 307 | 115 | 5 | 41 | 335 | 45 | 349 | 2.61e-129 | 373 |
| Msa0387500 | MtrunA17_Chr4g0043491 | 21.910 | 356 | 249 | 12 | 1 | 334 | 1 | 349 | 2.73e-13 | 70.1 |
| Msa0387500 | MtrunA17_Chr3g0120341 | 24.351 | 308 | 199 | 10 | 31 | 310 | 31 | 332 | 3.92e-12 | 66.6 |
| Msa0387500 | MtrunA17_Chr3g0120361 | 23.913 | 322 | 209 | 11 | 43 | 334 | 56 | 371 | 1.25e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387500 | AT5G59520.1 | 58.974 | 351 | 125 | 5 | 3 | 335 | 4 | 353 | 4.53e-134 | 385 |
| Msa0387500 | AT1G55910.1 | 57.729 | 317 | 109 | 4 | 28 | 335 | 25 | 325 | 1.32e-132 | 381 |
| Msa0387500 | AT2G32270.1 | 24.633 | 341 | 225 | 12 | 11 | 334 | 13 | 338 | 1.50e-15 | 77.0 |
| Msa0387500 | AT2G04032.1 | 26.075 | 372 | 229 | 16 | 1 | 334 | 1 | 364 | 7.03e-15 | 75.1 |
| Msa0387500 | AT4G19690.2 | 22.159 | 352 | 250 | 10 | 1 | 334 | 1 | 346 | 2.05e-14 | 73.6 |
| Msa0387500 | AT4G19680.2 | 23.269 | 361 | 238 | 11 | 1 | 334 | 1 | 349 | 2.52e-13 | 70.5 |
| Msa0387500 | AT1G31260.1 | 21.067 | 356 | 248 | 8 | 9 | 334 | 11 | 363 | 4.61e-13 | 69.7 |
| Msa0387500 | AT3G12750.1 | 22.507 | 351 | 229 | 12 | 12 | 334 | 19 | 354 | 5.34e-12 | 66.6 |
Find 73 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTGCTGTTGTTATTAA+TGG | 0.165665 | 3_1:+91452392 | None:intergenic |
| GGCATCGCCGTTGGAATTTC+AGG | 0.231489 | 3_1:-91453156 | Msa0387500:intron |
| GCCTTCATGTTGGCTTGTTC+TGG | 0.231810 | 3_1:-91453402 | Msa0387500:CDS |
| AATAAGGAACGTTGACTTTA+GGG | 0.232919 | 3_1:+91453734 | None:intergenic |
| GTTTGGTCCTTGTTAAAATA+TGG | 0.282576 | 3_1:-91453614 | Msa0387500:CDS |
| AAATAAGGAACGTTGACTTT+AGG | 0.295702 | 3_1:+91453733 | None:intergenic |
| TAATTGCAGTTGTCATGATT+TGG | 0.312381 | 3_1:-91452133 | Msa0387500:CDS |
| CCCTTCTGTTGTTGCGTCGA+TGG | 0.338990 | 3_1:+91452319 | None:intergenic |
| GTTTCGACACTCCATGGTTT+AGG | 0.340853 | 3_1:-91452184 | Msa0387500:CDS |
| AGCCCAATTGGCGTAGGAAT+TGG | 0.343250 | 3_1:-91452347 | Msa0387500:CDS |
| ATTCCAATTCCTACGCCAAT+TGG | 0.349639 | 3_1:+91452344 | None:intergenic |
| AAATTTACGTTCGAGGAGTT+TGG | 0.351394 | 3_1:-91453631 | Msa0387500:CDS |
| TCGTTCCAACGGAAATAATA+AGG | 0.363463 | 3_1:+91453546 | None:intergenic |
| GAACGTTGACTTTAGGGCTT+TGG | 0.365709 | 3_1:+91453740 | None:intergenic |
| AGACTAAGAGACACAAAATA+AGG | 0.372662 | 3_1:+91453718 | None:intergenic |
| CTATTAGGGACACAATTTGC+TGG | 0.389492 | 3_1:-91453513 | Msa0387500:CDS |
| AATTGCAGTTGTCATGATTT+GGG | 0.398612 | 3_1:-91452132 | Msa0387500:CDS |
| CAAATTGTGTCCCTAATAGA+AGG | 0.405120 | 3_1:+91453517 | None:intergenic |
| ATCAATCATTTAATCTCTAA+AGG | 0.405525 | 3_1:-91452230 | Msa0387500:CDS |
| TTCATGAAGACTACTAATCT+TGG | 0.413670 | 3_1:-91453228 | Msa0387500:CDS |
| TTTGCTATCTCTAGCCCAAT+TGG | 0.420772 | 3_1:-91452359 | Msa0387500:CDS |
| TTCAATTCAATCAAAGCTCA+TGG | 0.442939 | 3_1:-91453690 | Msa0387500:CDS |
| CAAGCCAACATGAAGGCAAA+AGG | 0.443986 | 3_1:+91453408 | None:intergenic |
| TTGGATGTATGCAATATCAA+TGG | 0.451469 | 3_1:-91452285 | Msa0387500:CDS |
| CGAACGTAAATTTATGTTGT+CGG | 0.451852 | 3_1:+91453641 | None:intergenic |
| CGTTGACTTTAGGGCTTTGG+AGG | 0.455192 | 3_1:+91453743 | None:intergenic |
| TGTCTCCTTATTATTTCCGT+TGG | 0.456903 | 3_1:-91453551 | Msa0387500:CDS |
| AAGAAGCATGGAGGAATTTG+TGG | 0.466479 | 3_1:-91452487 | Msa0387500:CDS |
| AGCTTTGATTGAATTGAAGA+AGG | 0.475831 | 3_1:+91453695 | None:intergenic |
| TTCCAATTCCTACGCCAATT+GGG | 0.476127 | 3_1:+91452345 | None:intergenic |
| GAGAACACCTCAAGAAGAAG+AGG | 0.481872 | 3_1:-91453289 | Msa0387500:CDS |
| ACAACATAAATTTACGTTCG+AGG | 0.488053 | 3_1:-91453638 | Msa0387500:CDS |
| AATTTATGTTGTCGGAGTCA+TGG | 0.509180 | 3_1:+91453649 | None:intergenic |
| GATATTTGCTGCAATAGCAA+TGG | 0.517861 | 3_1:-91452447 | Msa0387500:CDS |
| ATATTTGCTGCAATAGCAAT+GGG | 0.519706 | 3_1:-91452446 | Msa0387500:CDS |
| TGGATGTATGCAATATCAAT+GGG | 0.524253 | 3_1:-91452284 | Msa0387500:CDS |
| GTCGTTCCCTCTTCTTCTTG+AGG | 0.530005 | 3_1:+91453282 | None:intergenic |
| AAATTAATGATCAGGTACTA+AGG | 0.530087 | 3_1:-91452510 | Msa0387500:intron |
| CAGAAGGGAGAACAGCGGAT+TGG | 0.535719 | 3_1:-91452304 | Msa0387500:CDS |
| AACCATGTTTGGTGATTGTG+TGG | 0.549871 | 3_1:-91453370 | Msa0387500:CDS |
| GCCATCGACGCAACAACAGA+AGG | 0.551024 | 3_1:-91452320 | Msa0387500:CDS |
| GCTAAAGTTGAGGAACTTGA+AGG | 0.551786 | 3_1:-91453315 | Msa0387500:CDS |
| GCTCTCATCCATCGCCAACT+CGG | 0.559618 | 3_1:+91453260 | None:intergenic |
| TAAACCATGGAGTGTCGAAA+CGG | 0.560955 | 3_1:+91452186 | None:intergenic |
| AAGCCAACATGAAGGCAAAA+GGG | 0.565308 | 3_1:+91453409 | None:intergenic |
| GGGAACGACCGAGTTGGCGA+TGG | 0.565946 | 3_1:-91453268 | Msa0387500:CDS |
| CACCACACAATCACCAAACA+TGG | 0.566132 | 3_1:+91453368 | None:intergenic |
| AGACCATTAATAACAACAGC+AGG | 0.566425 | 3_1:-91452395 | Msa0387500:CDS |
| CATGTTTGGTGATTGTGTGG+TGG | 0.584077 | 3_1:-91453367 | Msa0387500:CDS |
| AGAGCCGTTTCGACACTCCA+TGG | 0.586693 | 3_1:-91452190 | Msa0387500:CDS |
| TCCAGAACAAGCCAACATGA+AGG | 0.595290 | 3_1:+91453401 | None:intergenic |
| GAAGGAAAACCTCGTTCCAA+CGG | 0.601049 | 3_1:+91453535 | None:intergenic |
| AAGTTGAGGAACTTGAAGGA+GGG | 0.602436 | 3_1:-91453311 | Msa0387500:CDS |
| TATGTTGTCGGAGTCATGGT+CGG | 0.603695 | 3_1:+91453653 | None:intergenic |
| TTAGGGACACAATTTGCTGG+TGG | 0.603967 | 3_1:-91453510 | Msa0387500:CDS |
| TGTAACAAGTAATAATCAGA+GGG | 0.605818 | 3_1:-91453340 | Msa0387500:CDS |
| AGAAGAGGGAACGACCGAGT+TGG | 0.611188 | 3_1:-91453274 | Msa0387500:CDS |
| AAAGTTGAGGAACTTGAAGG+AGG | 0.613893 | 3_1:-91453312 | Msa0387500:CDS |
| ATGTAACAAGTAATAATCAG+AGG | 0.621888 | 3_1:-91453341 | Msa0387500:CDS |
| AGAACACCTCAAGAAGAAGA+GGG | 0.622606 | 3_1:-91453288 | Msa0387500:CDS |
| ATCTCTAGCCCAATTGGCGT+AGG | 0.622666 | 3_1:-91452353 | Msa0387500:CDS |
| TTATTATTTCCGTTGGAACG+AGG | 0.624370 | 3_1:-91453544 | Msa0387500:CDS |
| CAGGTACTAAGGAAGAAGCA+TGG | 0.640699 | 3_1:-91452499 | Msa0387500:CDS |
| CCATCGACGCAACAACAGAA+GGG | 0.642467 | 3_1:-91452319 | Msa0387500:CDS |
| TCAGAGGGAAGCTAAAGTTG+AGG | 0.644763 | 3_1:-91453325 | Msa0387500:CDS |
| TCGAAACGGCTCTTCCTCTG+CGG | 0.648000 | 3_1:+91452200 | None:intergenic |
| ATATCAATGGGTATTGCTTG+TGG | 0.657971 | 3_1:-91452272 | Msa0387500:CDS |
| GAAATAACCTGAAATTCCAA+CGG | 0.658581 | 3_1:+91453149 | None:intergenic |
| CTAAAGGCTTCAAACCGCAG+AGG | 0.686420 | 3_1:-91452214 | Msa0387500:CDS |
| ACAGCAAGAAACCTAAACCA+TGG | 0.706576 | 3_1:+91452173 | None:intergenic |
| AATTCAATCAAAGCTCATGG+AGG | 0.725080 | 3_1:-91453687 | Msa0387500:CDS |
| AACAACAGAAGGGAGAACAG+CGG | 0.747170 | 3_1:-91452309 | Msa0387500:CDS |
| GTACTAAGGAAGAAGCATGG+AGG | 0.765390 | 3_1:-91452496 | Msa0387500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTATTCGTATATAT+GGG | + | chr3_1:91452983-91453002 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | + | chr3_1:91452984-91453003 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | - | chr3_1:91453359-91453378 | Msa0387500:CDS | 15.0% |
| !!! | TTTTAACTATTCGTATATAT+GGG | + | chr3_1:91452983-91453002 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | + | chr3_1:91452984-91453003 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | - | chr3_1:91453359-91453378 | Msa0387500:CDS | 15.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | - | chr3_1:91452779-91452798 | Msa0387500:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | - | chr3_1:91453082-91453101 | Msa0387500:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | - | chr3_1:91453083-91453102 | Msa0387500:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | - | chr3_1:91453110-91453129 | Msa0387500:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | + | chr3_1:91453281-91453300 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | + | chr3_1:91453282-91453301 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | - | chr3_1:91453647-91453666 | Msa0387500:CDS | 20.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | - | chr3_1:91452779-91452798 | Msa0387500:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | - | chr3_1:91453082-91453101 | Msa0387500:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | - | chr3_1:91453083-91453102 | Msa0387500:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | - | chr3_1:91453110-91453129 | Msa0387500:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | + | chr3_1:91453281-91453300 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | + | chr3_1:91453282-91453301 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | - | chr3_1:91453647-91453666 | Msa0387500:CDS | 20.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | + | chr3_1:91452273-91452292 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | - | chr3_1:91452298-91452317 | Msa0387500:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | - | chr3_1:91452536-91452555 | Msa0387500:intron | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | - | chr3_1:91452537-91452556 | Msa0387500:intron | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | + | chr3_1:91452775-91452794 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | - | chr3_1:91452780-91452799 | Msa0387500:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | + | chr3_1:91452832-91452851 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | - | chr3_1:91453109-91453128 | Msa0387500:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | - | chr3_1:91453367-91453386 | Msa0387500:CDS | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | + | chr3_1:91453479-91453498 | None:intergenic | 25.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | + | chr3_1:91452273-91452292 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | - | chr3_1:91452298-91452317 | Msa0387500:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | - | chr3_1:91452536-91452555 | Msa0387500:intron | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | - | chr3_1:91452537-91452556 | Msa0387500:intron | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | + | chr3_1:91452775-91452794 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | - | chr3_1:91452780-91452799 | Msa0387500:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | + | chr3_1:91452832-91452851 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | - | chr3_1:91453109-91453128 | Msa0387500:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | - | chr3_1:91453367-91453386 | Msa0387500:CDS | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | + | chr3_1:91453479-91453498 | None:intergenic | 25.0% |
| !! | AATAAGGAACGTTGACTTTA+GGG | + | chr3_1:91452146-91452165 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | + | chr3_1:91452147-91452166 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | + | chr3_1:91452162-91452181 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | + | chr3_1:91452185-91452204 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | - | chr3_1:91452187-91452206 | Msa0387500:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | + | chr3_1:91452239-91452258 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | - | chr3_1:91452239-91452258 | Msa0387500:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | - | chr3_1:91452263-91452282 | Msa0387500:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | - | chr3_1:91452301-91452320 | Msa0387500:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | - | chr3_1:91452496-91452515 | Msa0387500:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | - | chr3_1:91452649-91452668 | Msa0387500:intron | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | - | chr3_1:91452690-91452709 | Msa0387500:intron | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | - | chr3_1:91452700-91452719 | Msa0387500:intron | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | + | chr3_1:91452731-91452750 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | + | chr3_1:91452759-91452778 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | - | chr3_1:91452803-91452822 | Msa0387500:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | - | chr3_1:91453027-91453046 | Msa0387500:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | - | chr3_1:91453133-91453152 | Msa0387500:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | - | chr3_1:91453233-91453252 | Msa0387500:CDS | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | + | chr3_1:91453277-91453296 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | - | chr3_1:91453431-91453450 | Msa0387500:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | + | chr3_1:91453488-91453507 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | - | chr3_1:91453592-91453611 | Msa0387500:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | - | chr3_1:91453593-91453612 | Msa0387500:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | - | chr3_1:91453744-91453763 | Msa0387500:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | - | chr3_1:91453745-91453764 | Msa0387500:CDS | 30.0% | |
| !! | AATAAGGAACGTTGACTTTA+GGG | + | chr3_1:91452146-91452165 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | + | chr3_1:91452147-91452166 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | + | chr3_1:91452162-91452181 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | + | chr3_1:91452185-91452204 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | - | chr3_1:91452187-91452206 | Msa0387500:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | + | chr3_1:91452239-91452258 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | - | chr3_1:91452239-91452258 | Msa0387500:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | - | chr3_1:91452263-91452282 | Msa0387500:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | - | chr3_1:91452301-91452320 | Msa0387500:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | - | chr3_1:91452496-91452515 | Msa0387500:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | - | chr3_1:91452649-91452668 | Msa0387500:intron | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | - | chr3_1:91452690-91452709 | Msa0387500:intron | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | - | chr3_1:91452700-91452719 | Msa0387500:intron | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | + | chr3_1:91452731-91452750 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | + | chr3_1:91452759-91452778 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | - | chr3_1:91452803-91452822 | Msa0387500:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | - | chr3_1:91453027-91453046 | Msa0387500:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | - | chr3_1:91453133-91453152 | Msa0387500:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | - | chr3_1:91453233-91453252 | Msa0387500:CDS | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | + | chr3_1:91453277-91453296 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | - | chr3_1:91453431-91453450 | Msa0387500:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | + | chr3_1:91453488-91453507 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | - | chr3_1:91453592-91453611 | Msa0387500:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | - | chr3_1:91453593-91453612 | Msa0387500:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | - | chr3_1:91453744-91453763 | Msa0387500:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | - | chr3_1:91453745-91453764 | Msa0387500:CDS | 30.0% | |
| AATTCAATCAAAGCTCATGG+AGG | - | chr3_1:91452190-91452209 | Msa0387500:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | + | chr3_1:91452231-91452250 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | - | chr3_1:91452246-91452265 | Msa0387500:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | - | chr3_1:91452326-91452345 | Msa0387500:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | + | chr3_1:91452334-91452353 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | - | chr3_1:91452333-91452352 | Msa0387500:CDS | 35.0% | |
| ! | AACGAGGTTTTCCTTCTATT+AGG | - | chr3_1:91452349-91452368 | Msa0387500:CDS | 35.0% |
| ! | ACGAGGTTTTCCTTCTATTA+GGG | - | chr3_1:91452350-91452369 | Msa0387500:CDS | 35.0% |
| CAAATTGTGTCCCTAATAGA+AGG | + | chr3_1:91452363-91452382 | None:intergenic | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | - | chr3_1:91452867-91452886 | Msa0387500:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | + | chr3_1:91452876-91452895 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | + | chr3_1:91453268-91453287 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | - | chr3_1:91453430-91453449 | Msa0387500:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | - | chr3_1:91453482-91453501 | Msa0387500:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | - | chr3_1:91453605-91453624 | Msa0387500:CDS | 35.0% |
| AATTCAATCAAAGCTCATGG+AGG | - | chr3_1:91452190-91452209 | Msa0387500:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | + | chr3_1:91452231-91452250 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | - | chr3_1:91452246-91452265 | Msa0387500:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | - | chr3_1:91452326-91452345 | Msa0387500:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | + | chr3_1:91452334-91452353 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | - | chr3_1:91452333-91452352 | Msa0387500:CDS | 35.0% | |
| ! | AACGAGGTTTTCCTTCTATT+AGG | - | chr3_1:91452349-91452368 | Msa0387500:CDS | 35.0% |
| ! | ACGAGGTTTTCCTTCTATTA+GGG | - | chr3_1:91452350-91452369 | Msa0387500:CDS | 35.0% |
| CAAATTGTGTCCCTAATAGA+AGG | + | chr3_1:91452363-91452382 | None:intergenic | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | - | chr3_1:91452867-91452886 | Msa0387500:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | + | chr3_1:91452876-91452895 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | + | chr3_1:91453268-91453287 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | - | chr3_1:91453430-91453449 | Msa0387500:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | - | chr3_1:91453482-91453501 | Msa0387500:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | - | chr3_1:91453605-91453624 | Msa0387500:CDS | 35.0% |
| CTATTAGGGACACAATTTGC+TGG | - | chr3_1:91452364-91452383 | Msa0387500:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | - | chr3_1:91452379-91452398 | Msa0387500:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | + | chr3_1:91452458-91452477 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | - | chr3_1:91452465-91452484 | Msa0387500:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | + | chr3_1:91452471-91452490 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | - | chr3_1:91452507-91452526 | Msa0387500:intron | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | - | chr3_1:91452562-91452581 | Msa0387500:intron | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | - | chr3_1:91452565-91452584 | Msa0387500:intron | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | - | chr3_1:91452566-91452585 | Msa0387500:intron | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | - | chr3_1:91452589-91452608 | Msa0387500:intron | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | + | chr3_1:91452823-91452842 | None:intergenic | 40.0% |
| CAAAGTCACATCTCACAAGT+AGG | + | chr3_1:91453207-91453226 | None:intergenic | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | - | chr3_1:91453169-91453188 | Msa0387500:CDS | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | - | chr3_1:91453390-91453409 | Msa0387500:CDS | 40.0% |
| ! | TTTGCTATCTCTAGCCCAAT+TGG | - | chr3_1:91453518-91453537 | Msa0387500:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | + | chr3_1:91453535-91453554 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | + | chr3_1:91453536-91453555 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | + | chr3_1:91453694-91453713 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | + | chr3_1:91453707-91453726 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | - | chr3_1:91453713-91453732 | Msa0387500:CDS | 40.0% |
| CTATTAGGGACACAATTTGC+TGG | - | chr3_1:91452364-91452383 | Msa0387500:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | - | chr3_1:91452379-91452398 | Msa0387500:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | + | chr3_1:91452458-91452477 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | - | chr3_1:91452465-91452484 | Msa0387500:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | + | chr3_1:91452471-91452490 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | - | chr3_1:91452507-91452526 | Msa0387500:intron | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | - | chr3_1:91452562-91452581 | Msa0387500:intron | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | - | chr3_1:91452565-91452584 | Msa0387500:intron | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | - | chr3_1:91452566-91452585 | Msa0387500:intron | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | - | chr3_1:91452589-91452608 | Msa0387500:intron | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | + | chr3_1:91452823-91452842 | None:intergenic | 40.0% |
| CAAAGTCACATCTCACAAGT+AGG | + | chr3_1:91453207-91453226 | None:intergenic | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | - | chr3_1:91453169-91453188 | Msa0387500:CDS | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | - | chr3_1:91453390-91453409 | Msa0387500:CDS | 40.0% |
| ! | TTTGCTATCTCTAGCCCAAT+TGG | - | chr3_1:91453518-91453537 | Msa0387500:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | + | chr3_1:91453535-91453554 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | + | chr3_1:91453536-91453555 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | + | chr3_1:91453694-91453713 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | + | chr3_1:91453707-91453726 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | - | chr3_1:91453713-91453732 | Msa0387500:CDS | 40.0% |
| !! | GAACGTTGACTTTAGGGCTT+TGG | + | chr3_1:91452140-91452159 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | + | chr3_1:91452227-91452246 | None:intergenic | 45.0% | |
| GAAGGAAAACCTCGTTCCAA+CGG | + | chr3_1:91452345-91452364 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | - | chr3_1:91452367-91452386 | Msa0387500:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | + | chr3_1:91452472-91452491 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | + | chr3_1:91452479-91452498 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | + | chr3_1:91452512-91452531 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | - | chr3_1:91452510-91452529 | Msa0387500:intron | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | - | chr3_1:91452552-91452571 | Msa0387500:intron | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | - | chr3_1:91452588-91452607 | Msa0387500:intron | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | - | chr3_1:91453378-91453397 | Msa0387500:CDS | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | - | chr3_1:91453381-91453400 | Msa0387500:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | - | chr3_1:91453568-91453587 | Msa0387500:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | - | chr3_1:91453693-91453712 | Msa0387500:CDS | 45.0% | |
| !! | GAACGTTGACTTTAGGGCTT+TGG | + | chr3_1:91452140-91452159 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | + | chr3_1:91452227-91452246 | None:intergenic | 45.0% | |
| GAAGGAAAACCTCGTTCCAA+CGG | + | chr3_1:91452345-91452364 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | - | chr3_1:91452367-91452386 | Msa0387500:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | + | chr3_1:91452472-91452491 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | + | chr3_1:91452479-91452498 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | + | chr3_1:91452512-91452531 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | - | chr3_1:91452510-91452529 | Msa0387500:intron | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | - | chr3_1:91452552-91452571 | Msa0387500:intron | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | - | chr3_1:91452588-91452607 | Msa0387500:intron | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | - | chr3_1:91453378-91453397 | Msa0387500:CDS | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | - | chr3_1:91453381-91453400 | Msa0387500:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | - | chr3_1:91453568-91453587 | Msa0387500:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | - | chr3_1:91453693-91453712 | Msa0387500:CDS | 45.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | + | chr3_1:91452137-91452156 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | - | chr3_1:91452475-91452494 | Msa0387500:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | + | chr3_1:91452598-91452617 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | - | chr3_1:91452712-91452731 | Msa0387500:intron | 50.0% |
| ATCTCTAGCCCAATTGGCGT+AGG | - | chr3_1:91453524-91453543 | Msa0387500:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | - | chr3_1:91453530-91453549 | Msa0387500:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | - | chr3_1:91453558-91453577 | Msa0387500:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | - | chr3_1:91453663-91453682 | Msa0387500:CDS | 50.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | + | chr3_1:91452137-91452156 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | - | chr3_1:91452475-91452494 | Msa0387500:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | + | chr3_1:91452598-91452617 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | - | chr3_1:91452712-91452731 | Msa0387500:intron | 50.0% |
| ATCTCTAGCCCAATTGGCGT+AGG | - | chr3_1:91453524-91453543 | Msa0387500:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | - | chr3_1:91453530-91453549 | Msa0387500:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | - | chr3_1:91453558-91453577 | Msa0387500:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | - | chr3_1:91453663-91453682 | Msa0387500:CDS | 50.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | - | chr3_1:91452603-91452622 | Msa0387500:intron | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | + | chr3_1:91452620-91452639 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | - | chr3_1:91452721-91452740 | Msa0387500:intron | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | - | chr3_1:91453557-91453576 | Msa0387500:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | + | chr3_1:91453561-91453580 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | - | chr3_1:91453573-91453592 | Msa0387500:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | + | chr3_1:91453680-91453699 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | - | chr3_1:91453687-91453706 | Msa0387500:CDS | 55.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | - | chr3_1:91452603-91452622 | Msa0387500:intron | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | + | chr3_1:91452620-91452639 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | - | chr3_1:91452721-91452740 | Msa0387500:intron | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | - | chr3_1:91453557-91453576 | Msa0387500:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | + | chr3_1:91453561-91453580 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | - | chr3_1:91453573-91453592 | Msa0387500:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | + | chr3_1:91453680-91453699 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | - | chr3_1:91453687-91453706 | Msa0387500:CDS | 55.0% | |
| ! | GGGAACGACCGAGTTGGCGA+TGG | - | chr3_1:91452609-91452628 | Msa0387500:intron | 65.0% |
| ! | GGGAACGACCGAGTTGGCGA+TGG | - | chr3_1:91452609-91452628 | Msa0387500:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91452127 | 91453772 | 91452127 | ID=Msa0387500;Name=Msa0387500 |
| chr3_1 | mRNA | 91452127 | 91453772 | 91452127 | ID=Msa0387500-mRNA-1;Parent=Msa0387500;Name=Msa0387500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|335 |
| chr3_1 | exon | 91453157 | 91453772 | 91453157 | ID=Msa0387500-mRNA-1:exon:25455;Parent=Msa0387500-mRNA-1 |
| chr3_1 | exon | 91452127 | 91452518 | 91452127 | ID=Msa0387500-mRNA-1:exon:25454;Parent=Msa0387500-mRNA-1 |
| chr3_1 | CDS | 91453157 | 91453772 | 91453157 | ID=Msa0387500-mRNA-1:cds;Parent=Msa0387500-mRNA-1 |
| chr3_1 | CDS | 91452127 | 91452518 | 91452127 | ID=Msa0387500-mRNA-1:cds;Parent=Msa0387500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
