AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0935840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0935840 MtrunA17_Chr6g0451601 98.621 145 1 1 1 145 1 144 2.18e-105 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0935840 AT2G04700.3 86.441 118 16 0 28 145 29 146 3.65e-78 228
Msa0935840 AT2G04700.1 86.441 118 16 0 28 145 29 146 3.65e-78 228
Msa0935840 AT2G04700.2 63.529 85 29 1 63 145 6 90 1.86e-33 113

Find 55 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGGCTGCACAAGGATTT+TGG 0.145270 6_3:-6427961 Msa0935840:CDS
TATGGGTTAGGCCATTTATA+AGG 0.223780 6_3:+6426990 None:intergenic
GTGCACCCAACGAATCTTTA+TGG 0.263572 6_3:+6428349 None:intergenic
TCATCTGTGCCCCTTATAAA+TGG 0.277222 6_3:-6427001 Msa0935840:three_prime_UTR
TTTCATATCTTTATTGATAT+CGG 0.284959 6_3:-6426908 Msa0935840:three_prime_UTR
AAAAGAATGTTCCTGATTTA+CGG 0.288914 6_3:+6430068 None:intergenic
GATCTGTGACAAAGTAAGTA+TGG 0.291489 6_3:+6426972 None:intergenic
ACGGAGAGGGGAAGGGGCAG+AGG 0.323962 6_3:+6432052 None:intergenic
GCGGCGACGGAGAGGGGAAG+GGG 0.336318 6_3:+6432046 None:intergenic
GTGCACCACTCTGCCCTTGC+CGG 0.356354 6_3:-6428332 Msa0935840:intron
AGGGGAAGGGGCAGAGGAAA+CGG 0.356475 6_3:+6432058 None:intergenic
ATGGGTTAGGCCATTTATAA+GGG 0.373188 6_3:+6426991 None:intergenic
TCGCCGGCAAAATCGTTATC+AGG 0.384591 6_3:+6427320 None:intergenic
CATCACAAAATTGTATCTTC+TGG 0.387958 6_3:-6432186 Msa0935840:five_prime_UTR
CGGCGGCGACGGAGAGGGGA+AGG 0.391290 6_3:+6432044 None:intergenic
GAGCAATATGCCCGTAAATC+AGG 0.400997 6_3:-6430079 Msa0935840:CDS
AAAGAATGTTCCTGATTTAC+GGG 0.415753 6_3:+6430069 None:intergenic
AGAGGTCATTGCTGGTGAAT+TGG 0.427995 6_3:+6432103 None:intergenic
TGCCTTGCAGACTATCACCT+TGG 0.428260 6_3:-6427174 Msa0935840:intron
TTACATTGAGCTCGAACGAC+GGG 0.430081 6_3:+6432011 None:intergenic
ATAAATCAGTTGAAATTATG+AGG 0.465770 6_3:-6430111 Msa0935840:CDS
GAAGCTTGAGAGGTCATTGC+TGG 0.473544 6_3:+6432095 None:intergenic
TGACAAAGTAAGTATGGGTT+AGG 0.474066 6_3:+6426978 None:intergenic
GGAAGGTGCTGCGGCGGCGA+CGG 0.477381 6_3:+6432033 None:intergenic
CTCTCTCTCATGGGAACACA+CGG 0.481015 6_3:+6427932 None:intergenic
GGCTGACCATAAAGATTCGT+TGG 0.483156 6_3:-6428355 Msa0935840:CDS
AAATGAAAGTTATGAAATGA+AGG 0.495288 6_3:+6426948 None:intergenic
ATGTGCCTACCTCTCTCTCA+TGG 0.500306 6_3:+6427922 None:intergenic
GGCGGCGACGGAGAGGGGAA+GGG 0.501771 6_3:+6432045 None:intergenic
AGTAACTGCTGTTGTTATCA+AGG 0.507865 6_3:-6430032 Msa0935840:intron
GCTGACCATAAAGATTCGTT+GGG 0.513031 6_3:-6428354 Msa0935840:CDS
GCTGCGGCGGCGACGGAGAG+GGG 0.516356 6_3:+6432040 None:intergenic
CGACGGGGAAGGTGCTGCGG+CGG 0.516514 6_3:+6432027 None:intergenic
GTGCTGCGGCGGCGACGGAG+AGG 0.517186 6_3:+6432038 None:intergenic
TGCTGCGGCGGCGACGGAGA+GGG 0.517909 6_3:+6432039 None:intergenic
TGATTCTTTAATTTCATCCA+AGG 0.519163 6_3:+6427157 None:intergenic
CAGAATTACCTGTTCATCGC+CGG 0.521484 6_3:+6427304 None:intergenic
ATTTCAACTGATTTATCAGA+CGG 0.530268 6_3:+6430118 None:intergenic
TTTACATTGAGCTCGAACGA+CGG 0.560983 6_3:+6432010 None:intergenic
CAAGAAGTATTTACCGGCAA+GGG 0.563318 6_3:+6428319 None:intergenic
ATCTGTGACAAAGTAAGTAT+GGG 0.563741 6_3:+6426973 None:intergenic
GAACGACGGGGAAGGTGCTG+CGG 0.563966 6_3:+6432024 None:intergenic
AGCGAAGGTTGAAGCTTGAG+AGG 0.571862 6_3:+6432085 None:intergenic
TGTGCCTACCTCTCTCTCAT+GGG 0.575835 6_3:+6427923 None:intergenic
ACAAGAAGTATTTACCGGCA+AGG 0.590984 6_3:+6428318 None:intergenic
CGTGTGTTCCCATGAGAGAG+AGG 0.615907 6_3:-6427931 Msa0935840:intron
TTATGACGATAAAGCTGCTG+AGG 0.616351 6_3:-6427978 Msa0935840:CDS
TTGAGCTCGAACGACGGGGA+AGG 0.617813 6_3:+6432016 None:intergenic
TGGGTTAGGCCATTTATAAG+GGG 0.622811 6_3:+6426992 None:intergenic
TGGAGAAAATGGTGTTTCTG+TGG 0.628860 6_3:+6432140 None:intergenic
AAAGCTGCTGAGGCTGCACA+AGG 0.634290 6_3:-6427968 Msa0935840:CDS
TACATTGAGCTCGAACGACG+GGG 0.648508 6_3:+6432012 None:intergenic
AGAGGAAACGGAGACAGCGA+AGG 0.651986 6_3:+6432070 None:intergenic
TCTCTCTCATGGGAACACAC+GGG 0.712722 6_3:+6427933 None:intergenic
ATTTACCGGCAAGGGCAGAG+TGG 0.719195 6_3:+6428327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAAAAAGTTAAAAATT+TGG + chr6_3:6427133-6427152 None:intergenic 10.0%
!!! ATTTTGAAAAAGTTATATTT+CGG + chr6_3:6428316-6428335 None:intergenic 10.0%
!!! TTTTTATTTTTTTGTTTTTG+TGG - chr6_3:6429341-6429360 Msa0935840:intron 10.0%
!!! ATGTATTGATTTTATTAAAA+TGG - chr6_3:6431433-6431452 Msa0935840:intron 10.0%
!!! TTTTGATTTTGATTTTTTGA+TGG - chr6_3:6427170-6427189 Msa0935840:intron 15.0%
!! ATGAAACTACAATTTATATT+TGG + chr6_3:6429148-6429167 None:intergenic 15.0%
!!! TTTTGTTTCATTTTCATAAA+CGG - chr6_3:6429282-6429301 Msa0935840:intron 15.0%
!! TTTGAAAATGTATTTATTAG+TGG - chr6_3:6429742-6429761 Msa0935840:intron 15.0%
!! TAAAATTTCATTAGATTACA+TGG - chr6_3:6430397-6430416 Msa0935840:intron 15.0%
!!! ATTTCATAACTTTCATTTTT+TGG - chr6_3:6432167-6432186 Msa0935840:five_prime_UTR 15.0%
!! TTTCATATCTTTATTGATAT+CGG - chr6_3:6432202-6432221 Msa0935840:five_prime_UTR 15.0%
!!! AATTGGTTTTCTTCTAAAAA+TGG + chr6_3:6426993-6427012 None:intergenic 20.0%
!!! AGTATATGTTTTGATATGTT+TGG - chr6_3:6427690-6427709 Msa0935840:intron 20.0%
!!! TAACATGAAGTTAAGATTTT+TGG - chr6_3:6427754-6427773 Msa0935840:intron 20.0%
!!! TCAAATTTGAAAGCTTTTTT+GGG - chr6_3:6427972-6427991 Msa0935840:CDS 20.0%
!!! CAAATTTGTATTTAACTTGA+TGG + chr6_3:6428440-6428459 None:intergenic 20.0%
!!! ATGACATGAATTTTTAAGTA+CGG - chr6_3:6428480-6428499 Msa0935840:intron 20.0%
!! TTAAGTACGGTAAAAATAAT+TGG - chr6_3:6428493-6428512 Msa0935840:intron 20.0%
!! TAAGTACGGTAAAAATAATT+GGG - chr6_3:6428494-6428513 Msa0935840:intron 20.0%
!!! AAGACAGAAAATTCTATTTT+TGG + chr6_3:6428561-6428580 None:intergenic 20.0%
!!! AAAAATAGAATTTTCTGTCT+TGG - chr6_3:6428560-6428579 Msa0935840:intron 20.0%
!!! TAACAAAAACTTACTTCTTT+TGG - chr6_3:6428629-6428648 Msa0935840:intron 20.0%
!! TGAACTTTCTAAATATATAC+CGG - chr6_3:6428742-6428761 Msa0935840:intron 20.0%
!! ATAAATCAGTTGAAATTATG+AGG - chr6_3:6428999-6429018 Msa0935840:intron 20.0%
!!! TCGAACCTAATTTAAATTTT+TGG - chr6_3:6429949-6429968 Msa0935840:intron 20.0%
!! CCATTCCAAAAATTTAAATT+AGG + chr6_3:6429957-6429976 None:intergenic 20.0%
!!! CCTAATTTAAATTTTTGGAA+TGG - chr6_3:6429954-6429973 Msa0935840:intron 20.0%
!!! TAAATTTTTGGAATGGATAA+TGG - chr6_3:6429961-6429980 Msa0935840:intron 20.0%
!! TAGAACACTATACTAATTTA+TGG - chr6_3:6430035-6430054 Msa0935840:CDS 20.0%
!! AGAACACTATACTAATTTAT+GGG - chr6_3:6430036-6430055 Msa0935840:CDS 20.0%
!! ATCATAACAAAATTTACACA+GGG + chr6_3:6430300-6430319 None:intergenic 20.0%
!!! ATTTTGTGTCTTTATTCTAT+AGG - chr6_3:6431019-6431038 Msa0935840:intron 20.0%
!!! TTAAACAAACTGATATTTTC+TGG - chr6_3:6431376-6431395 Msa0935840:intron 20.0%
!!! TAAACAAACTGATATTTTCT+GGG - chr6_3:6431377-6431396 Msa0935840:intron 20.0%
!! TGAATTATAAAATACGATCA+TGG + chr6_3:6431517-6431536 None:intergenic 20.0%
!!! TAATTCATACTTTTGTTATC+AGG - chr6_3:6431530-6431549 Msa0935840:intron 20.0%
!!! AATTCATACTTTTGTTATCA+GGG - chr6_3:6431531-6431550 Msa0935840:intron 20.0%
!! TTAGTTTATATCTTGGTAAA+AGG - chr6_3:6431574-6431593 Msa0935840:intron 20.0%
!! AAATGAAAGTTATGAAATGA+AGG + chr6_3:6432165-6432184 None:intergenic 20.0%
!! ATTTTGTGATGTGTGTTTTA+TGG + chr6_3:6426915-6426934 None:intergenic 25.0%
!! TCTTCTAAAAATGGAGAAAA+TGG + chr6_3:6426984-6427003 None:intergenic 25.0%
!! TGTTTAGTAAGTGTTGTTAA+TGG - chr6_3:6427252-6427271 Msa0935840:intron 25.0%
!! TACACTTATAGGATCAATTT+TGG - chr6_3:6427588-6427607 Msa0935840:intron 25.0%
! AAAGTGAATTGAATGTAAAG+TGG + chr6_3:6427853-6427872 None:intergenic 25.0%
!!! GTCAAATTTGAAAGCTTTTT+TGG - chr6_3:6427971-6427990 Msa0935840:CDS 25.0%
! TGTTCTCATAAAATTGTTGA+TGG - chr6_3:6428106-6428125 Msa0935840:intron 25.0%
! TGGTTCAACATATATAACAT+TGG - chr6_3:6428829-6428848 Msa0935840:intron 25.0%
! TTCAACATATATAACATTGG+TGG - chr6_3:6428832-6428851 Msa0935840:intron 25.0%
! TTTCTATAGAAATAATGTGC+TGG - chr6_3:6428955-6428974 Msa0935840:intron 25.0%
!! ATTTCAACTGATTTATCAGA+CGG + chr6_3:6428995-6429014 None:intergenic 25.0%
! AAAAGAATGTTCCTGATTTA+CGG + chr6_3:6429045-6429064 None:intergenic 25.0%
!! ATTGAATTCTAAGTTGAGAA+AGG + chr6_3:6429491-6429510 None:intergenic 25.0%
! TTCAAACCATATCTGATTAA+AGG + chr6_3:6429728-6429747 None:intergenic 25.0%
! GAAAATGTATTTATTAGTGG+TGG - chr6_3:6429745-6429764 Msa0935840:intron 25.0%
! AATTCGTTGCATTTATACTT+CGG + chr6_3:6429835-6429854 None:intergenic 25.0%
!!! AATCTTCCTAAAAGTACTTT+GGG + chr6_3:6430105-6430124 None:intergenic 25.0%
!!! AAATCTTCCTAAAAGTACTT+TGG + chr6_3:6430106-6430125 None:intergenic 25.0%
!! AACGTTTCTGTTTTATATAC+AGG - chr6_3:6430137-6430156 Msa0935840:intron 25.0%
! ATCAAAACAAAATTCACACA+GGG + chr6_3:6430247-6430266 None:intergenic 25.0%
! GATCATAACAAAATTTACAC+AGG + chr6_3:6430301-6430320 None:intergenic 25.0%
!! TATTTTACGTTAAGAAACAG+AGG + chr6_3:6430323-6430342 None:intergenic 25.0%
!! GAAAATTTTCCTATACATCT+TGG - chr6_3:6430499-6430518 Msa0935840:intron 25.0%
! AAAAGCAAATATGGAAATGA+AGG - chr6_3:6430528-6430547 Msa0935840:intron 25.0%
! AAAGCAAATATGGAAATGAA+GGG - chr6_3:6430529-6430548 Msa0935840:intron 25.0%
! CTGATAACAGATATTTACTT+TGG - chr6_3:6430685-6430704 Msa0935840:intron 25.0%
!!! TATTGTTTCTACTTTGAAAC+AGG - chr6_3:6430728-6430747 Msa0935840:intron 25.0%
!!! ATTGTTTCTACTTTGAAACA+GGG - chr6_3:6430729-6430748 Msa0935840:intron 25.0%
!!! GTAAAACAAGAAGTATTTAC+CGG + chr6_3:6430800-6430819 None:intergenic 25.0%
! TATTTAATAACACTGCAACA+AGG + chr6_3:6430822-6430841 None:intergenic 25.0%
!! TGTTTAAATTTTACTCTGCT+TGG + chr6_3:6431363-6431382 None:intergenic 25.0%
! GACTTTCTTAGTTTATATCT+TGG - chr6_3:6431567-6431586 Msa0935840:intron 25.0%
!! ATGTTATTTGTCAAGAAATG+TGG - chr6_3:6431619-6431638 Msa0935840:intron 25.0%
! TTAAGAAAACAATATTCTGG+AGG + chr6_3:6431716-6431735 None:intergenic 25.0%
! GAGTTAAGAAAACAATATTC+TGG + chr6_3:6431719-6431738 None:intergenic 25.0%
!! ATTGTTTTCTTAACTCATTG+TGG - chr6_3:6431723-6431742 Msa0935840:intron 25.0%
!!! ATCAAAATATGTTGTTTCGT+TGG + chr6_3:6431870-6431889 None:intergenic 25.0%
!!! CGAAACAACATATTTTGATT+TGG - chr6_3:6431871-6431890 Msa0935840:intron 25.0%
!! TGATTCTTTAATTTCATCCA+AGG + chr6_3:6431956-6431975 None:intergenic 25.0%
!!! ACTGTATCTTTTGAAAAACA+AGG - chr6_3:6432033-6432052 Msa0935840:CDS 25.0%
!!! CTGTATCTTTTGAAAAACAA+GGG - chr6_3:6432034-6432053 Msa0935840:CDS 25.0%
CATCACAAAATTGTATCTTC+TGG - chr6_3:6426924-6426943 Msa0935840:three_prime_UTR 30.0%
TTACCATGAAAAATCCAACT+GGG + chr6_3:6427196-6427215 None:intergenic 30.0%
TTTACCATGAAAAATCCAAC+TGG + chr6_3:6427197-6427216 None:intergenic 30.0%
! TAGTAAGTGTTGTTAATGGT+TGG - chr6_3:6427256-6427275 Msa0935840:intron 30.0%
CTTCATGTTAGAATCAATTC+AGG + chr6_3:6427744-6427763 None:intergenic 30.0%
ATTGAATGTAAAGTGGTGTT+TGG + chr6_3:6427846-6427865 None:intergenic 30.0%
AAACCAATCATGCACTTATT+TGG - chr6_3:6427909-6427928 Msa0935840:intron 30.0%
CAGAAGTTTGAACATGTAAA+AGG - chr6_3:6428001-6428020 Msa0935840:intron 30.0%
! ATTATATTTTACACCTCGAC+AGG + chr6_3:6428053-6428072 None:intergenic 30.0%
!!! GGGAGTTTAAAGTACTTTTT+TGG - chr6_3:6428209-6428228 Msa0935840:intron 30.0%
ATATAAACGGACACATAAGA+TGG + chr6_3:6428376-6428395 None:intergenic 30.0%
!!! GTTTGAATGTTAGTTTTCTG+TGG - chr6_3:6428883-6428902 Msa0935840:intron 30.0%
TGTTGTTGTGCTTTCAATTT+CGG - chr6_3:6428914-6428933 Msa0935840:intron 30.0%
AAAGAATGTTCCTGATTTAC+GGG + chr6_3:6429044-6429063 None:intergenic 30.0%
ACATTTGCATCAACAACTAA+AGG + chr6_3:6429174-6429193 None:intergenic 30.0%
AATGTTGTTGAATCAAGTCT+CGG - chr6_3:6429189-6429208 Msa0935840:intron 30.0%
! CTCAAAAAACAAGTTGAGAA+AGG + chr6_3:6429531-6429550 None:intergenic 30.0%
!!! TTGTTTTTTGAGCTCTGTAT+TGG - chr6_3:6429539-6429558 Msa0935840:intron 30.0%
!! TGCTGATATATGTTTCTAGT+TGG - chr6_3:6429582-6429601 Msa0935840:intron 30.0%
!! GCTGATATATGTTTCTAGTT+GGG - chr6_3:6429583-6429602 Msa0935840:intron 30.0%
!!! ATGTTTCTAGTTGGGTTTTT+AGG - chr6_3:6429591-6429610 Msa0935840:intron 30.0%
! ACCTAGAAGTTTTACGTTAT+GGG - chr6_3:6429633-6429652 Msa0935840:intron 30.0%
AACCATATCTGATTAAAGGT+GGG + chr6_3:6429724-6429743 None:intergenic 30.0%
AAACCATATCTGATTAAAGG+TGG + chr6_3:6429725-6429744 None:intergenic 30.0%
!! ACTTCGGCACTTTAAAATTT+GGG + chr6_3:6429819-6429838 None:intergenic 30.0%
!! TACTTCGGCACTTTAAAATT+TGG + chr6_3:6429820-6429839 None:intergenic 30.0%
TAAATGCAACGAATTTGAAG+TGG - chr6_3:6429840-6429859 Msa0935840:intron 30.0%
!! GTAATACCCAAAGTACTTTT+AGG - chr6_3:6430096-6430115 Msa0935840:CDS 30.0%
TAAAACAGAAACGTTGTGTT+TGG + chr6_3:6430132-6430151 None:intergenic 30.0%
ATTCAAAAATCATCTTCCCA+TGG - chr6_3:6430187-6430206 Msa0935840:intron 30.0%
GTTCAAAAAACAAGTACCAT+GGG + chr6_3:6430206-6430225 None:intergenic 30.0%
TGTTCAAAAAACAAGTACCA+TGG + chr6_3:6430207-6430226 None:intergenic 30.0%
GATCAAAACAAAATTCACAC+AGG + chr6_3:6430248-6430267 None:intergenic 30.0%
AAAACCAGAAGATCAAAACA+GGG + chr6_3:6430271-6430290 None:intergenic 30.0%
TAAAACCAGAAGATCAAAAC+AGG + chr6_3:6430272-6430291 None:intergenic 30.0%
! CAATTAGGAGCATATAAAAG+TGG + chr6_3:6430346-6430365 None:intergenic 30.0%
ACATGATCAATTGTGCAATT+AGG + chr6_3:6430361-6430380 None:intergenic 30.0%
TTCTCAGTTATGCAAATTCT+GGG + chr6_3:6430470-6430489 None:intergenic 30.0%
TTTCTCAGTTATGCAAATTC+TGG + chr6_3:6430471-6430490 None:intergenic 30.0%
! AAGTTCGAAAATGAGTTTTC+CGG - chr6_3:6430600-6430619 Msa0935840:intron 30.0%
AAAATTATGCTACGCTATAG+TGG + chr6_3:6430865-6430884 None:intergenic 30.0%
TTGTACTAAATAGCATATCG+CGG + chr6_3:6430905-6430924 None:intergenic 30.0%
AGTACAAAATGTTGTGCAAT+AGG - chr6_3:6430918-6430937 Msa0935840:intron 30.0%
ACAAAATTGTCTTTGCAACA+AGG + chr6_3:6431006-6431025 None:intergenic 30.0%
TGTCTTTATTCTATAGGTTC+TGG - chr6_3:6431025-6431044 Msa0935840:intron 30.0%
! ATCCAAAATCACTGTGTTTT+AGG - chr6_3:6431107-6431126 Msa0935840:intron 30.0%
TGATAAATTAAGGTCTGAGA+AGG + chr6_3:6431240-6431259 None:intergenic 30.0%
GCTTCGAACATGATAAATTA+AGG + chr6_3:6431250-6431269 None:intergenic 30.0%
! AATATCAGTGTCATTAATCG+CGG + chr6_3:6431405-6431424 None:intergenic 30.0%
! GTTTGATACAGTTGTTTCAT+AGG + chr6_3:6431481-6431500 None:intergenic 30.0%
ATAAACTAAGAAAGTCACTC+AGG + chr6_3:6431563-6431582 None:intergenic 30.0%
GTTTATATCTTGGTAAAAGG+CGG - chr6_3:6431577-6431596 Msa0935840:intron 30.0%
!!! TGTGGTTTTGTTTGATAGAA+AGG - chr6_3:6431741-6431760 Msa0935840:intron 30.0%
ATCTGTGACAAAGTAAGTAT+GGG + chr6_3:6432140-6432159 None:intergenic 30.0%
TGTTATCCAGAAGATGTTTG+TGG - chr6_3:6427292-6427311 Msa0935840:intron 35.0%
!! ACTTTCATCTCACTTTTAGC+TGG + chr6_3:6427420-6427439 None:intergenic 35.0%
AGACTCAGTTCTACACTTAT+AGG - chr6_3:6427577-6427596 Msa0935840:intron 35.0%
!! GTTTGGCTTCACTTTTAGAA+TGG + chr6_3:6427614-6427633 None:intergenic 35.0%
TAATCAATTATGACTGCCAC+AGG + chr6_3:6427661-6427680 None:intergenic 35.0%
GTGGCAGTCATAATTGATTA+TGG - chr6_3:6427661-6427680 Msa0935840:intron 35.0%
GCAGTCATAATTGATTATGG+AGG - chr6_3:6427664-6427683 Msa0935840:intron 35.0%
CATGTTAGAATCAATTCAGG+AGG + chr6_3:6427741-6427760 None:intergenic 35.0%
GTACCAAATAAGTGCATGAT+TGG + chr6_3:6427915-6427934 None:intergenic 35.0%
!!! TTGAAAGCTTTTTTGGGTTC+TGG - chr6_3:6427978-6427997 Msa0935840:CDS 35.0%
ACAGACACACTTCATATTGA+AGG - chr6_3:6428144-6428163 Msa0935840:intron 35.0%
CAGACACACTTCATATTGAA+GGG - chr6_3:6428145-6428164 Msa0935840:intron 35.0%
AGACACACTTCATATTGAAG+GGG - chr6_3:6428146-6428165 Msa0935840:intron 35.0%
ATGAAGCACGAGCATATAAA+CGG + chr6_3:6428389-6428408 None:intergenic 35.0%
TTTATATGCTCGTGCTTCAT+AGG - chr6_3:6428389-6428408 Msa0935840:intron 35.0%
!! CAGAAGAGTACTAGGTTAAT+GGG + chr6_3:6428799-6428818 None:intergenic 35.0%
!! TCAGAAGAGTACTAGGTTAA+TGG + chr6_3:6428800-6428819 None:intergenic 35.0%
ATTAACCTAGTACTCTTCTG+AGG - chr6_3:6428799-6428818 Msa0935840:intron 35.0%
! GAAAGCACAACAACAGAATT+TGG + chr6_3:6428909-6428928 None:intergenic 35.0%
!! ACATTCTTTTGTGCTGACAA+AGG - chr6_3:6429055-6429074 Msa0935840:intron 35.0%
AGTAACTGCTGTTGTTATCA+AGG - chr6_3:6429078-6429097 Msa0935840:intron 35.0%
! ATTTTGTTGAACGTGAGTCA+TGG - chr6_3:6429236-6429255 Msa0935840:intron 35.0%
! TTTTGTTGAACGTGAGTCAT+GGG - chr6_3:6429237-6429256 Msa0935840:intron 35.0%
CATGGGAGATTCATTATTGT+TGG - chr6_3:6429254-6429273 Msa0935840:intron 35.0%
! TAAGTTGAGAAAGGACAATC+TGG + chr6_3:6429482-6429501 None:intergenic 35.0%
!! CTGTATTGGTTTCAGATGTT+AGG - chr6_3:6429553-6429572 Msa0935840:intron 35.0%
! GACCTAGAAGTTTTACGTTA+TGG - chr6_3:6429632-6429651 Msa0935840:intron 35.0%
! CCTAGAAGTTTTACGTTATG+GGG - chr6_3:6429634-6429653 Msa0935840:intron 35.0%
! CTAGAAGTTTTACGTTATGG+GGG - chr6_3:6429635-6429654 Msa0935840:intron 35.0%
!! GGCACTTTAAAATTTGGGTA+GGG + chr6_3:6429814-6429833 None:intergenic 35.0%
ATCCTGTAATACATTGACGA+TGG - chr6_3:6429926-6429945 Msa0935840:intron 35.0%
AAACCAGAAGATCAAAACAG+GGG + chr6_3:6430270-6430289 None:intergenic 35.0%
! TGGTTTGAAATGCTGAATGT+TGG - chr6_3:6430417-6430436 Msa0935840:intron 35.0%
TTTCCTATACATCTTGGTAG+TGG - chr6_3:6430505-6430524 Msa0935840:intron 35.0%
TTTCCACTACCAAGATGTAT+AGG + chr6_3:6430511-6430530 None:intergenic 35.0%
!! TGGTAGTGGAAAAGCAAATA+TGG - chr6_3:6430519-6430538 Msa0935840:intron 35.0%
TCATCCCAGCATATCAAAAT+CGG + chr6_3:6430571-6430590 None:intergenic 35.0%
!! TTCTACTTTGAAACAGGGTT+TGG - chr6_3:6430734-6430753 Msa0935840:intron 35.0%
TTTGGATAGCAGAAAATAGC+AGG + chr6_3:6430970-6430989 None:intergenic 35.0%
! CAAGGCAGTGTTATCAATTT+TGG + chr6_3:6430988-6431007 None:intergenic 35.0%
TGGCAATGTGGTTGTATATT+AGG - chr6_3:6431045-6431064 Msa0935840:intron 35.0%
! GTGATTTTGGATGTAAGCTT+AGG + chr6_3:6431099-6431118 None:intergenic 35.0%
! TGCCTAAAACACAGTGATTT+TGG + chr6_3:6431112-6431131 None:intergenic 35.0%
GAAACAACTGTATCAAACAG+AGG - chr6_3:6431483-6431502 Msa0935840:intron 35.0%
TGAAAAACAAGGGAAGAGAA+AGG - chr6_3:6432044-6432063 Msa0935840:CDS 35.0%
!! ATGGGTTAGGCCATTTATAA+GGG + chr6_3:6432122-6432141 None:intergenic 35.0%
!! TATGGGTTAGGCCATTTATA+AGG + chr6_3:6432123-6432142 None:intergenic 35.0%
TGACAAAGTAAGTATGGGTT+AGG + chr6_3:6432135-6432154 None:intergenic 35.0%
GATCTGTGACAAAGTAAGTA+TGG + chr6_3:6432141-6432160 None:intergenic 35.0%
! TGGAGAAAATGGTGTTTCTG+TGG + chr6_3:6426973-6426992 None:intergenic 40.0%
TTTACATTGAGCTCGAACGA+CGG + chr6_3:6427103-6427122 None:intergenic 40.0%
!!! TGATTTTTTGATGGCCCAGT+TGG - chr6_3:6427179-6427198 Msa0935840:intron 40.0%
GCATTTCCACAAACATCTTC+TGG + chr6_3:6427301-6427320 None:intergenic 40.0%
GCAGAATCAATTCTACTCGA+AGG - chr6_3:6427540-6427559 Msa0935840:intron 40.0%
CCAAACATAGGATGCATGTT+TGG + chr6_3:6427631-6427650 None:intergenic 40.0%
CCAAACATGCATCCTATGTT+TGG - chr6_3:6427628-6427647 Msa0935840:intron 40.0%
CATGCACTTATTTGGTACCT+CGG - chr6_3:6427917-6427936 Msa0935840:intron 40.0%
ATGCACTTATTTGGTACCTC+GGG - chr6_3:6427918-6427937 Msa0935840:intron 40.0%
TTATTTGGTACCTCGGGAAT+TGG - chr6_3:6427924-6427943 Msa0935840:intron 40.0%
TATTTGGTACCTCGGGAATT+GGG - chr6_3:6427925-6427944 Msa0935840:intron 40.0%
TTTAAACTCCCACACCAGAA+TGG + chr6_3:6428200-6428219 None:intergenic 40.0%
!!! GTACTTTTTTGGACTCGACA+TGG - chr6_3:6428220-6428239 Msa0935840:intron 40.0%
! ACTAACCGGCACTTCAATTT+TGG - chr6_3:6428262-6428281 Msa0935840:intron 40.0%
! GTACTAGGTTAATGGGTCAT+TGG + chr6_3:6428792-6428811 None:intergenic 40.0%
!! TACATCCTCAGAAGAGTACT+AGG + chr6_3:6428807-6428826 None:intergenic 40.0%
! TACTCTTCTGAGGATGTAAC+TGG - chr6_3:6428809-6428828 Msa0935840:intron 40.0%
!! TAATGTGCTGGTTCTTTCAG+TGG - chr6_3:6428967-6428986 Msa0935840:intron 40.0%
AGTAATCCAAGTAGCAGCTA+GGG + chr6_3:6429427-6429446 None:intergenic 40.0%
TAGTAATCCAAGTAGCAGCT+AGG + chr6_3:6429428-6429447 None:intergenic 40.0%
! CAAGTTGAGAAAGGACAATC+TGG + chr6_3:6429522-6429541 None:intergenic 40.0%
CCCCATAACGTAAAACTTCT+AGG + chr6_3:6429637-6429656 None:intergenic 40.0%
GTCCCACCTTTAATCAGATA+TGG - chr6_3:6429719-6429738 Msa0935840:intron 40.0%
! CCATTACCAAAACTGGCTTA+TGG + chr6_3:6429781-6429800 None:intergenic 40.0%
!! CCATAAGCCAGTTTTGGTAA+TGG - chr6_3:6429778-6429797 Msa0935840:intron 40.0%
!! CGGCACTTTAAAATTTGGGT+AGG + chr6_3:6429815-6429834 None:intergenic 40.0%
GACCATCGTCAATGTATTAC+AGG + chr6_3:6429931-6429950 None:intergenic 40.0%
GCTGACCATAAAGATTCGTT+GGG - chr6_3:6430756-6430775 Msa0935840:intron 40.0%
!! CAAGAAGTATTTACCGGCAA+GGG + chr6_3:6430794-6430813 None:intergenic 40.0%
!! ACAAGAAGTATTTACCGGCA+AGG + chr6_3:6430795-6430814 None:intergenic 40.0%
! TTCTATAGGTTCTGGCAATG+TGG - chr6_3:6431033-6431052 Msa0935840:intron 40.0%
TTATGACGATAAAGCTGCTG+AGG - chr6_3:6431132-6431151 Msa0935840:intron 40.0%
! GAGTGAGAAAAAGCATGCAA+TGG + chr6_3:6431771-6431790 None:intergenic 40.0%
!! ACTCCTGATAACGATTTTGC+CGG - chr6_3:6431787-6431806 Msa0935840:intron 40.0%
TCATCTGTGCCCCTTATAAA+TGG - chr6_3:6432109-6432128 Msa0935840:exon 40.0%
! TGGGTTAGGCCATTTATAAG+GGG + chr6_3:6432121-6432140 None:intergenic 40.0%
AGAGGTCATTGCTGGTGAAT+TGG + chr6_3:6427010-6427029 None:intergenic 45.0%
TTACATTGAGCTCGAACGAC+GGG + chr6_3:6427102-6427121 None:intergenic 45.0%
! TGGCCCAGTTGGATTTTTCA+TGG - chr6_3:6427190-6427209 Msa0935840:intron 45.0%
ACATCAAAACCCAATTCCCG+AGG + chr6_3:6427937-6427956 None:intergenic 45.0%
! TTTTTGGACTCGACATGGCT+TGG - chr6_3:6428225-6428244 Msa0935840:intron 45.0%
AAGCAGCCAGAAAGACTAAC+CGG - chr6_3:6428248-6428267 Msa0935840:intron 45.0%
TCCAGCCAAAATTGAAGTGC+CGG + chr6_3:6428270-6428289 None:intergenic 45.0%
CGCGCATGTGTGAATGTTAA+CGG - chr6_3:6428350-6428369 Msa0935840:CDS 45.0%
! TTGGTGCTTAACCAATGCTC+CGG - chr6_3:6428648-6428667 Msa0935840:intron 45.0%
AGAATGTTAAACAGTGCCCC+CGG + chr6_3:6428670-6428689 None:intergenic 45.0%
TTGGTCGATCAGTGAATCAC+TGG + chr6_3:6428773-6428792 None:intergenic 45.0%
GAGCAATATGCCCGTAAATC+AGG - chr6_3:6429031-6429050 Msa0935840:intron 45.0%
TTATACCCCTAGCTGCTACT+TGG - chr6_3:6429418-6429437 Msa0935840:intron 45.0%
GTAATCCAAGTAGCAGCTAG+GGG + chr6_3:6429426-6429445 None:intergenic 45.0%
! TCCTCTCCATAAGCCAGTTT+TGG - chr6_3:6429772-6429791 Msa0935840:intron 45.0%
! ACCAAAACTGGCTTATGGAG+AGG + chr6_3:6429776-6429795 None:intergenic 45.0%
AACTCGGCCATTACCAAAAC+TGG + chr6_3:6429788-6429807 None:intergenic 45.0%
!!! GTTTTGGTAATGGCCGAGTT+AGG - chr6_3:6429788-6429807 Msa0935840:intron 45.0%
AATTTGGGTAGGGCCTAACT+CGG + chr6_3:6429804-6429823 None:intergenic 45.0%
TCTACGTCTATCACTGTGGT+GGG + chr6_3:6429885-6429904 None:intergenic 45.0%
ATCTACGTCTATCACTGTGG+TGG + chr6_3:6429886-6429905 None:intergenic 45.0%
CAGATCTACGTCTATCACTG+TGG + chr6_3:6429889-6429908 None:intergenic 45.0%
!!! GATCCCCTGTTTTGATCTTC+TGG - chr6_3:6430264-6430283 Msa0935840:intron 45.0%
TTGATCATGTGTCAAGCACG+AGG - chr6_3:6430371-6430390 Msa0935840:intron 45.0%
!!! AACCGCCGATTTTGATATGC+TGG - chr6_3:6430563-6430582 Msa0935840:intron 45.0%
!!! ACCGCCGATTTTGATATGCT+GGG - chr6_3:6430564-6430583 Msa0935840:intron 45.0%
TCCCAGCATATCAAAATCGG+CGG + chr6_3:6430568-6430587 None:intergenic 45.0%
TCCGGATTGTCGTTGTTGAT+AGG - chr6_3:6430618-6430637 Msa0935840:intron 45.0%
GCCTATCAACAACGACAATC+CGG + chr6_3:6430622-6430641 None:intergenic 45.0%
GGCTGACCATAAAGATTCGT+TGG - chr6_3:6430755-6430774 Msa0935840:intron 45.0%
GTGCACCCAACGAATCTTTA+TGG + chr6_3:6430764-6430783 None:intergenic 45.0%
CAGAATTACCTGTTCATCGC+CGG + chr6_3:6431809-6431828 None:intergenic 45.0%
ATCCAAGGTGATAGTCTGCA+AGG + chr6_3:6431941-6431960 None:intergenic 45.0%
!!! TAAAATGTTAAAAATTATTT+TGG + chr6_3:6428693-6428712 None:intergenic 5.0%
GAAGCTTGAGAGGTCATTGC+TGG + chr6_3:6427018-6427037 None:intergenic 50.0%
AGCGAAGGTTGAAGCTTGAG+AGG + chr6_3:6427028-6427047 None:intergenic 50.0%
TACATTGAGCTCGAACGACG+GGG + chr6_3:6427101-6427120 None:intergenic 50.0%
ACAGGCGTGGAACCAAACAT+AGG + chr6_3:6427643-6427662 None:intergenic 50.0%
! TATGTTTGGTTCCACGCCTG+TGG - chr6_3:6427642-6427661 Msa0935840:intron 50.0%
AATTATGACTGCCACAGGCG+TGG + chr6_3:6427656-6427675 None:intergenic 50.0%
!! GAAGTGCCGGTTAGTCTTTC+TGG + chr6_3:6428257-6428276 None:intergenic 50.0%
!! ACCGGCACTTCAATTTTGGC+TGG - chr6_3:6428266-6428285 Msa0935840:intron 50.0%
TCTTGTTAACCAGTGCCCCT+GGG - chr6_3:6428517-6428536 Msa0935840:intron 50.0%
TGGTGCTTAACCAATGCTCC+GGG - chr6_3:6428649-6428668 Msa0935840:intron 50.0%
! CAGTGAATCACTGGCTAGAC+CGG + chr6_3:6428764-6428783 None:intergenic 50.0%
TACGTCTATCACTGTGGTGG+GGG + chr6_3:6429883-6429902 None:intergenic 50.0%
CTACGTCTATCACTGTGGTG+GGG + chr6_3:6429884-6429903 None:intergenic 50.0%
! CTGAGGCTGCACAAGGATTT+TGG - chr6_3:6431149-6431168 Msa0935840:intron 50.0%
TCTCTCTCATGGGAACACAC+GGG + chr6_3:6431180-6431199 None:intergenic 50.0%
CTCTCTCTCATGGGAACACA+CGG + chr6_3:6431181-6431200 None:intergenic 50.0%
TGTTCCCATGAGAGAGAGGT+AGG - chr6_3:6431183-6431202 Msa0935840:intron 50.0%
TGTGCCTACCTCTCTCTCAT+GGG + chr6_3:6431190-6431209 None:intergenic 50.0%
ATGTGCCTACCTCTCTCTCA+TGG + chr6_3:6431191-6431210 None:intergenic 50.0%
GGTAGGCACATCTTTACTGC+TGG - chr6_3:6431200-6431219 Msa0935840:intron 50.0%
TCGCCGGCAAAATCGTTATC+AGG + chr6_3:6431793-6431812 None:intergenic 50.0%
TGCCTTGCAGACTATCACCT+TGG - chr6_3:6431936-6431955 Msa0935840:intron 50.0%
AGAGGAAACGGAGACAGCGA+AGG + chr6_3:6427043-6427062 None:intergenic 55.0%
GCACATGTGCAAACCTGTCG+AGG - chr6_3:6428037-6428056 Msa0935840:intron 55.0%
TCTGAGTATCCGACGCGTGT+CGG - chr6_3:6428169-6428188 Msa0935840:intron 55.0%
TCGGACACTCCATTCTGGTG+TGG - chr6_3:6428188-6428207 Msa0935840:intron 55.0%
CGGACACTCCATTCTGGTGT+GGG - chr6_3:6428189-6428208 Msa0935840:intron 55.0%
! GTCTTGTTAACCAGTGCCCC+TGG - chr6_3:6428516-6428535 Msa0935840:intron 55.0%
CTTGTTAACCAGTGCCCCTG+GGG - chr6_3:6428518-6428537 Msa0935840:intron 55.0%
TCCTTAACCAGTGTGCCCCA+GGG + chr6_3:6428536-6428555 None:intergenic 55.0%
TTCCTTAACCAGTGTGCCCC+AGG + chr6_3:6428537-6428556 None:intergenic 55.0%
GGTGCTTAACCAATGCTCCG+GGG - chr6_3:6428650-6428669 Msa0935840:intron 55.0%
GTGCTTAACCAATGCTCCGG+GGG - chr6_3:6428651-6428670 Msa0935840:intron 55.0%
ATTTACCGGCAAGGGCAGAG+TGG + chr6_3:6430786-6430805 None:intergenic 55.0%
AAAGCTGCTGAGGCTGCACA+AGG - chr6_3:6431142-6431161 Msa0935840:intron 55.0%
CGTGTGTTCCCATGAGAGAG+AGG - chr6_3:6431179-6431198 Msa0935840:intron 55.0%
! CGATTTTGCCGGCGATGAAC+AGG - chr6_3:6431798-6431817 Msa0935840:intron 55.0%
AGGGGAAGGGGCAGAGGAAA+CGG + chr6_3:6427055-6427074 None:intergenic 60.0%
TTGAGCTCGAACGACGGGGA+AGG + chr6_3:6427097-6427116 None:intergenic 60.0%
! ATGGAGTGTCCGACACGCGT+CGG + chr6_3:6428181-6428200 None:intergenic 60.0%
GCGTGTCGGACACTCCATTC+TGG - chr6_3:6428183-6428202 Msa0935840:intron 60.0%
CCTTAACCAGTGTGCCCCAG+GGG + chr6_3:6428535-6428554 None:intergenic 60.0%
AAACAGTGCCCCCGGAGCAT+TGG + chr6_3:6428662-6428681 None:intergenic 60.0%
!! GAACGACGGGGAAGGTGCTG+CGG + chr6_3:6427089-6427108 None:intergenic 65.0%
! CCCCTGGGGCACACTGGTTA+AGG - chr6_3:6428532-6428551 Msa0935840:intron 65.0%
GTGCACCACTCTGCCCTTGC+CGG - chr6_3:6430778-6430797 Msa0935840:intron 65.0%
ACGGAGAGGGGAAGGGGCAG+AGG + chr6_3:6427061-6427080 None:intergenic 70.0%
GCGGCGACGGAGAGGGGAAG+GGG + chr6_3:6427067-6427086 None:intergenic 75.0%
GGCGGCGACGGAGAGGGGAA+GGG + chr6_3:6427068-6427087 None:intergenic 75.0%
TGCTGCGGCGGCGACGGAGA+GGG + chr6_3:6427074-6427093 None:intergenic 75.0%
!! GGAAGGTGCTGCGGCGGCGA+CGG + chr6_3:6427080-6427099 None:intergenic 75.0%
!! CGACGGGGAAGGTGCTGCGG+CGG + chr6_3:6427086-6427105 None:intergenic 75.0%
! CCAGTGTGCCCCAGGGGCAC+TGG + chr6_3:6428529-6428548 None:intergenic 75.0%
CCAGTGCCCCTGGGGCACAC+TGG - chr6_3:6428526-6428545 Msa0935840:intron 75.0%
! CGGCGGCGACGGAGAGGGGA+AGG + chr6_3:6427069-6427088 None:intergenic 80.0%
! GCTGCGGCGGCGACGGAGAG+GGG + chr6_3:6427073-6427092 None:intergenic 80.0%
! GTGCTGCGGCGGCGACGGAG+AGG + chr6_3:6427075-6427094 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 6426895 6432237 6426895 ID=Msa0935840;Name=Msa0935840
chr6_3 mRNA 6426895 6432237 6426895 ID=Msa0935840-mRNA-1;Parent=Msa0935840;Name=Msa0935840-mRNA-1;_AED=0.19;_eAED=0.19;_QI=126|1|1|1|1|1|6|247|145
chr6_3 exon 6426895 6427186 6426895 ID=Msa0935840-mRNA-1:exon:2075;Parent=Msa0935840-mRNA-1
chr6_3 exon 6427313 6427373 6427313 ID=Msa0935840-mRNA-1:exon:2074;Parent=Msa0935840-mRNA-1
chr6_3 exon 6427932 6428003 6427932 ID=Msa0935840-mRNA-1:exon:2073;Parent=Msa0935840-mRNA-1
chr6_3 exon 6428333 6428382 6428333 ID=Msa0935840-mRNA-1:exon:2072;Parent=Msa0935840-mRNA-1
chr6_3 exon 6430033 6430145 6430033 ID=Msa0935840-mRNA-1:exon:2071;Parent=Msa0935840-mRNA-1
chr6_3 exon 6432015 6432237 6432015 ID=Msa0935840-mRNA-1:exon:2070;Parent=Msa0935840-mRNA-1
chr6_3 five_prime_UTR 6432112 6432237 6432112 ID=Msa0935840-mRNA-1:five_prime_utr;Parent=Msa0935840-mRNA-1
chr6_3 CDS 6432015 6432111 6432015 ID=Msa0935840-mRNA-1:cds;Parent=Msa0935840-mRNA-1
chr6_3 CDS 6430033 6430145 6430033 ID=Msa0935840-mRNA-1:cds;Parent=Msa0935840-mRNA-1
chr6_3 CDS 6428333 6428382 6428333 ID=Msa0935840-mRNA-1:cds;Parent=Msa0935840-mRNA-1
chr6_3 CDS 6427932 6428003 6427932 ID=Msa0935840-mRNA-1:cds;Parent=Msa0935840-mRNA-1
chr6_3 CDS 6427313 6427373 6427313 ID=Msa0935840-mRNA-1:cds;Parent=Msa0935840-mRNA-1
chr6_3 CDS 6427142 6427186 6427142 ID=Msa0935840-mRNA-1:cds;Parent=Msa0935840-mRNA-1
chr6_3 three_prime_UTR 6426895 6427141 6426895 ID=Msa0935840-mRNA-1:three_prime_utr;Parent=Msa0935840-mRNA-1
Gene Sequence

>Msa0935840

ATGACCTCTCAAGCTTCAACCTTCGCTGTCTCCGTTTCCTCTGCCCCTTCCCCTCTCCGTCGCCGCCGCAGCACCTTCCCCGTCGTTCGAGCTCAATTGGAACCGTCTGATAAATCAGTTGAAATTATGAGGAAGTTCTCAGAGCAATATGCCCGTAAATCAGGAACATTCTTTTGTGCTGACAAAGGAGTAACTGCTGTTGTTATCAAGGGTTTGGCTGACCATAAAGATTCGTTGGGTGCACCACTCTGCCCTTGCCGGCATTATGACGATAAAGCTGCTGAGGCTGCACAAGGATTTTGGAATTGCCCGTGTGTTCCCATGAGAGAGAGAAAGGAGTGCCATTGCATGCTTTTTCTCACTCCTGATAACGATTTTGCCGGCGATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCAAATATGTAA

Protein sequence

>Msa0935840

MTSQASTFAVSVSSAPSPLRRRRSTFPVVRAQLEPSDKSVEIMRKFSEQYARKSGTFFCADKGVTAVVIKGLADHKDSLGAPLCPCRHYDDKAAEAAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGDEQTITLDEIKESTANM*