Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339800 | XP_003597387.1 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339800 | sp|Q94DG6|ZIP1_ORYSJ | 58.434 | 332 | 118 | 4 | 21 | 335 | 24 | 352 | 5.99e-137 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0111780 | Msa0339800 | 0.819110 | 1.379303e-52 | -8.615850e-47 |
| Msa0227420 | Msa0339800 | 0.990456 | 1.011497e-182 | -8.615850e-47 |
| Msa0259930 | Msa0339800 | 0.991189 | 2.391806e-186 | -8.615850e-47 |
| Msa0339800 | Msa0366230 | 0.803932 | 2.752958e-49 | -8.615850e-47 |
| Msa0339800 | Msa0387500 | 0.984773 | 1.516266e-161 | -8.615850e-47 |
| Msa0339800 | Msa0570600 | 0.829499 | 4.975475e-55 | -8.615850e-47 |
| Msa0339800 | Msa0655200 | 0.829332 | 5.462452e-55 | -8.615850e-47 |
| Msa0339800 | Msa0717860 | 0.802878 | 4.552761e-49 | -8.615850e-47 |
| Msa0339800 | Msa0731580 | 0.807844 | 4.144425e-50 | -8.615850e-47 |
| Msa0339800 | Msa0832950 | 0.814558 | 1.449595e-51 | -8.615850e-47 |
| Msa0339800 | Msa0935840 | -0.815926 | 7.198633e-52 | -8.615850e-47 |
| Msa0339800 | Msa1008360 | 0.809603 | 1.743775e-50 | -8.615850e-47 |
| Msa0339800 | Msa1049970 | 0.818343 | 2.060174e-52 | -8.615850e-47 |
| Msa0339800 | Msa1432850 | 0.991272 | 8.875651e-187 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339800 | MtrunA17_Chr2g0328511 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Msa0339800 | MtrunA17_Chr3g0102071 | 57.980 | 307 | 115 | 5 | 41 | 335 | 45 | 349 | 2.61e-129 | 373 |
| Msa0339800 | MtrunA17_Chr4g0043491 | 21.910 | 356 | 249 | 12 | 1 | 334 | 1 | 349 | 2.73e-13 | 70.1 |
| Msa0339800 | MtrunA17_Chr3g0120341 | 24.351 | 308 | 199 | 10 | 31 | 310 | 31 | 332 | 3.92e-12 | 66.6 |
| Msa0339800 | MtrunA17_Chr3g0120361 | 23.913 | 322 | 209 | 11 | 43 | 334 | 56 | 371 | 1.25e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339800 | AT5G59520.1 | 58.974 | 351 | 125 | 5 | 3 | 335 | 4 | 353 | 4.53e-134 | 385 |
| Msa0339800 | AT1G55910.1 | 57.729 | 317 | 109 | 4 | 28 | 335 | 25 | 325 | 1.32e-132 | 381 |
| Msa0339800 | AT2G32270.1 | 24.633 | 341 | 225 | 12 | 11 | 334 | 13 | 338 | 1.50e-15 | 77.0 |
| Msa0339800 | AT2G04032.1 | 26.075 | 372 | 229 | 16 | 1 | 334 | 1 | 364 | 7.03e-15 | 75.1 |
| Msa0339800 | AT4G19690.2 | 22.159 | 352 | 250 | 10 | 1 | 334 | 1 | 346 | 2.05e-14 | 73.6 |
| Msa0339800 | AT4G19680.2 | 23.269 | 361 | 238 | 11 | 1 | 334 | 1 | 349 | 2.52e-13 | 70.5 |
| Msa0339800 | AT1G31260.1 | 21.067 | 356 | 248 | 8 | 9 | 334 | 11 | 363 | 4.61e-13 | 69.7 |
| Msa0339800 | AT3G12750.1 | 22.507 | 351 | 229 | 12 | 12 | 334 | 19 | 354 | 5.34e-12 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTGCTGTTGTTATTAA+TGG | 0.165665 | 2_4:+61089269 | None:intergenic |
| GGCATCGCCGTTGGAATTTC+AGG | 0.231489 | 2_4:-61090033 | Msa0339800:intron |
| GCCTTCATGTTGGCTTGTTC+TGG | 0.231810 | 2_4:-61090279 | Msa0339800:CDS |
| AATAAGGAACGTTGACTTTA+GGG | 0.232919 | 2_4:+61090611 | None:intergenic |
| GTTTGGTCCTTGTTAAAATA+TGG | 0.282576 | 2_4:-61090491 | Msa0339800:CDS |
| AAATAAGGAACGTTGACTTT+AGG | 0.295702 | 2_4:+61090610 | None:intergenic |
| TAATTGCAGTTGTCATGATT+TGG | 0.312381 | 2_4:-61089010 | Msa0339800:CDS |
| CCCTTCTGTTGTTGCGTCGA+TGG | 0.338990 | 2_4:+61089196 | None:intergenic |
| GTTTCGACACTCCATGGTTT+AGG | 0.340853 | 2_4:-61089061 | Msa0339800:CDS |
| AGCCCAATTGGCGTAGGAAT+TGG | 0.345732 | 2_4:-61089224 | Msa0339800:CDS |
| ATTCCAATTCCTACGCCAAT+TGG | 0.349639 | 2_4:+61089221 | None:intergenic |
| AAATTTACGTTCGAGGAGTT+TGG | 0.351394 | 2_4:-61090508 | Msa0339800:CDS |
| TCGTTCCAACGGAAATAATA+AGG | 0.363463 | 2_4:+61090423 | None:intergenic |
| GAACGTTGACTTTAGGGCTT+TGG | 0.365709 | 2_4:+61090617 | None:intergenic |
| AGACTAAGAGACACAAAATA+AGG | 0.372662 | 2_4:+61090595 | None:intergenic |
| CTATTAGGGACACAATTTGC+TGG | 0.389492 | 2_4:-61090390 | Msa0339800:CDS |
| AATTGCAGTTGTCATGATTT+GGG | 0.398612 | 2_4:-61089009 | Msa0339800:CDS |
| ATCAATCATTTAATCTCTAA+AGG | 0.405525 | 2_4:-61089107 | Msa0339800:CDS |
| TTCATGAAGACTACTAATCT+TGG | 0.413670 | 2_4:-61090105 | Msa0339800:CDS |
| TTCAATTCAATCAAAGCTCA+TGG | 0.442939 | 2_4:-61090567 | Msa0339800:CDS |
| CAAGCCAACATGAAGGCAAA+AGG | 0.443986 | 2_4:+61090285 | None:intergenic |
| TTGGATGTATGCAATATCAA+TGG | 0.451469 | 2_4:-61089162 | Msa0339800:CDS |
| CGAACGTAAATTTATGTTGT+CGG | 0.451852 | 2_4:+61090518 | None:intergenic |
| CGTTGACTTTAGGGCTTTGG+AGG | 0.455192 | 2_4:+61090620 | None:intergenic |
| TGTCTCCTTATTATTTCCGT+TGG | 0.456903 | 2_4:-61090428 | Msa0339800:CDS |
| TTTGCTATCTCAAGCCCAAT+TGG | 0.457379 | 2_4:-61089236 | Msa0339800:CDS |
| AAGAAGCATGGAGGAATTTG+TGG | 0.466479 | 2_4:-61089364 | Msa0339800:CDS |
| TTCCAATTCCTACGCCAATT+GGG | 0.466756 | 2_4:+61089222 | None:intergenic |
| AGCTTTGATTGAATTGAAGA+AGG | 0.475831 | 2_4:+61090572 | None:intergenic |
| GAGAACACCTCAAGAAGAAG+AGG | 0.481872 | 2_4:-61090166 | Msa0339800:CDS |
| ACAACATAAATTTACGTTCG+AGG | 0.488053 | 2_4:-61090515 | Msa0339800:CDS |
| AATTTATGTTGTCGGAGTCA+TGG | 0.509180 | 2_4:+61090526 | None:intergenic |
| GATATTTGCTGCAATAGCAA+TGG | 0.517861 | 2_4:-61089324 | Msa0339800:CDS |
| ATATTTGCTGCAATAGCAAT+GGG | 0.519706 | 2_4:-61089323 | Msa0339800:CDS |
| TGGATGTATGCAATATCAAT+GGG | 0.524253 | 2_4:-61089161 | Msa0339800:CDS |
| GTCGTTCCCTCTTCTTCTTG+AGG | 0.530005 | 2_4:+61090159 | None:intergenic |
| AAATTAATGATCAGGTACTA+AGG | 0.530087 | 2_4:-61089387 | Msa0339800:intron |
| CAGAAGGGAGAACAGCGGAT+TGG | 0.535719 | 2_4:-61089181 | Msa0339800:CDS |
| AACCATGTTTGGTGATTGTG+TGG | 0.549871 | 2_4:-61090247 | Msa0339800:CDS |
| GCCATCGACGCAACAACAGA+AGG | 0.551024 | 2_4:-61089197 | Msa0339800:CDS |
| GCTAAAGTTGAGGAACTTGA+AGG | 0.551786 | 2_4:-61090192 | Msa0339800:CDS |
| GCTCTCATCCATCGCCAACT+CGG | 0.559618 | 2_4:+61090137 | None:intergenic |
| TAAACCATGGAGTGTCGAAA+CGG | 0.560955 | 2_4:+61089063 | None:intergenic |
| AAGCCAACATGAAGGCAAAA+GGG | 0.565308 | 2_4:+61090286 | None:intergenic |
| GGGAACGACCGAGTTGGCGA+TGG | 0.565946 | 2_4:-61090145 | Msa0339800:CDS |
| CACCACACAATCACCAAACA+TGG | 0.566132 | 2_4:+61090245 | None:intergenic |
| AGACCATTAATAACAACAGC+AGG | 0.566425 | 2_4:-61089272 | Msa0339800:CDS |
| CATGTTTGGTGATTGTGTGG+TGG | 0.584077 | 2_4:-61090244 | Msa0339800:CDS |
| AGAGCCGTTTCGACACTCCA+TGG | 0.586693 | 2_4:-61089067 | Msa0339800:CDS |
| TCCAGAACAAGCCAACATGA+AGG | 0.595290 | 2_4:+61090278 | None:intergenic |
| AAGTTGAGGAACTTGAAGGA+GGG | 0.602436 | 2_4:-61090188 | Msa0339800:CDS |
| TATGTTGTCGGAGTCATGGT+CGG | 0.603695 | 2_4:+61090530 | None:intergenic |
| TTAGGGACACAATTTGCTGG+TGG | 0.603967 | 2_4:-61090387 | Msa0339800:CDS |
| TGTAACAAGTAATAATCAGA+GGG | 0.605818 | 2_4:-61090217 | Msa0339800:CDS |
| AGAAGAGGGAACGACCGAGT+TGG | 0.611188 | 2_4:-61090151 | Msa0339800:CDS |
| AAAGTTGAGGAACTTGAAGG+AGG | 0.613893 | 2_4:-61090189 | Msa0339800:CDS |
| ATGTAACAAGTAATAATCAG+AGG | 0.621888 | 2_4:-61090218 | Msa0339800:CDS |
| AGAACACCTCAAGAAGAAGA+GGG | 0.622606 | 2_4:-61090165 | Msa0339800:CDS |
| TTATTATTTCCGTTGGAACG+AGG | 0.624370 | 2_4:-61090421 | Msa0339800:CDS |
| CAGGTACTAAGGAAGAAGCA+TGG | 0.640699 | 2_4:-61089376 | Msa0339800:CDS |
| ATCTCAAGCCCAATTGGCGT+AGG | 0.640719 | 2_4:-61089230 | Msa0339800:CDS |
| CCATCGACGCAACAACAGAA+GGG | 0.642467 | 2_4:-61089196 | Msa0339800:CDS |
| TCAGAGGGAAGCTAAAGTTG+AGG | 0.644763 | 2_4:-61090202 | Msa0339800:CDS |
| TCGAAACGGCTCTTCCTCTG+CGG | 0.648000 | 2_4:+61089077 | None:intergenic |
| ATATCAATGGGTATTGCTTG+TGG | 0.657971 | 2_4:-61089149 | Msa0339800:CDS |
| GAAATAACCTGAAATTCCAA+CGG | 0.686017 | 2_4:+61090026 | None:intergenic |
| CTAAAGGCTTCAAACCGCAG+AGG | 0.686420 | 2_4:-61089091 | Msa0339800:CDS |
| ACAGCAAGAAACCTAAACCA+TGG | 0.706576 | 2_4:+61089050 | None:intergenic |
| AATTCAATCAAAGCTCATGG+AGG | 0.725080 | 2_4:-61090564 | Msa0339800:CDS |
| AACAACAGAAGGGAGAACAG+CGG | 0.747170 | 2_4:-61089186 | Msa0339800:CDS |
| GTACTAAGGAAGAAGCATGG+AGG | 0.765390 | 2_4:-61089373 | Msa0339800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTATTCGTATATAT+GGG | + | chr2_4:61089860-61089879 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | + | chr2_4:61089861-61089880 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | - | chr2_4:61090236-61090255 | Msa0339800:CDS | 15.0% |
| !!! | TTTTAACTATTCGTATATAT+GGG | + | chr2_4:61089860-61089879 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | + | chr2_4:61089861-61089880 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | - | chr2_4:61090236-61090255 | Msa0339800:CDS | 15.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | - | chr2_4:61089656-61089675 | Msa0339800:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | - | chr2_4:61089959-61089978 | Msa0339800:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | - | chr2_4:61089960-61089979 | Msa0339800:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | - | chr2_4:61089987-61090006 | Msa0339800:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | + | chr2_4:61090158-61090177 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | + | chr2_4:61090159-61090178 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | - | chr2_4:61090524-61090543 | Msa0339800:CDS | 20.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | - | chr2_4:61089656-61089675 | Msa0339800:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | - | chr2_4:61089959-61089978 | Msa0339800:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | - | chr2_4:61089960-61089979 | Msa0339800:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | - | chr2_4:61089987-61090006 | Msa0339800:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | + | chr2_4:61090158-61090177 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | + | chr2_4:61090159-61090178 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | - | chr2_4:61090524-61090543 | Msa0339800:CDS | 20.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | + | chr2_4:61089150-61089169 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | - | chr2_4:61089175-61089194 | Msa0339800:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | - | chr2_4:61089413-61089432 | Msa0339800:intron | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | - | chr2_4:61089414-61089433 | Msa0339800:intron | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | + | chr2_4:61089652-61089671 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | - | chr2_4:61089657-61089676 | Msa0339800:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | + | chr2_4:61089709-61089728 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | - | chr2_4:61089986-61090005 | Msa0339800:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | - | chr2_4:61090244-61090263 | Msa0339800:CDS | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | + | chr2_4:61090356-61090375 | None:intergenic | 25.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | + | chr2_4:61089150-61089169 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | - | chr2_4:61089175-61089194 | Msa0339800:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | - | chr2_4:61089413-61089432 | Msa0339800:intron | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | - | chr2_4:61089414-61089433 | Msa0339800:intron | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | + | chr2_4:61089652-61089671 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | - | chr2_4:61089657-61089676 | Msa0339800:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | + | chr2_4:61089709-61089728 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | - | chr2_4:61089986-61090005 | Msa0339800:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | - | chr2_4:61090244-61090263 | Msa0339800:CDS | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | + | chr2_4:61090356-61090375 | None:intergenic | 25.0% |
| !! | AATAAGGAACGTTGACTTTA+GGG | + | chr2_4:61089023-61089042 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | + | chr2_4:61089024-61089043 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | + | chr2_4:61089039-61089058 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | + | chr2_4:61089062-61089081 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | - | chr2_4:61089064-61089083 | Msa0339800:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | + | chr2_4:61089116-61089135 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | - | chr2_4:61089116-61089135 | Msa0339800:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | - | chr2_4:61089140-61089159 | Msa0339800:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | - | chr2_4:61089178-61089197 | Msa0339800:CDS | 30.0% |
| ! | AACGAGGTTTTTCTTCTATT+AGG | - | chr2_4:61089226-61089245 | Msa0339800:CDS | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | - | chr2_4:61089227-61089246 | Msa0339800:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | - | chr2_4:61089373-61089392 | Msa0339800:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | - | chr2_4:61089526-61089545 | Msa0339800:intron | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | - | chr2_4:61089567-61089586 | Msa0339800:intron | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | - | chr2_4:61089577-61089596 | Msa0339800:intron | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | + | chr2_4:61089608-61089627 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | + | chr2_4:61089636-61089655 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | - | chr2_4:61089680-61089699 | Msa0339800:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | - | chr2_4:61089904-61089923 | Msa0339800:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | - | chr2_4:61090010-61090029 | Msa0339800:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | - | chr2_4:61090110-61090129 | Msa0339800:CDS | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | + | chr2_4:61090154-61090173 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | - | chr2_4:61090308-61090327 | Msa0339800:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | + | chr2_4:61090365-61090384 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | - | chr2_4:61090469-61090488 | Msa0339800:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | - | chr2_4:61090470-61090489 | Msa0339800:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | - | chr2_4:61090621-61090640 | Msa0339800:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | - | chr2_4:61090622-61090641 | Msa0339800:CDS | 30.0% | |
| !! | AATAAGGAACGTTGACTTTA+GGG | + | chr2_4:61089023-61089042 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | + | chr2_4:61089024-61089043 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | + | chr2_4:61089039-61089058 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | + | chr2_4:61089062-61089081 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | - | chr2_4:61089064-61089083 | Msa0339800:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | + | chr2_4:61089116-61089135 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | - | chr2_4:61089116-61089135 | Msa0339800:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | - | chr2_4:61089140-61089159 | Msa0339800:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | - | chr2_4:61089178-61089197 | Msa0339800:CDS | 30.0% |
| ! | AACGAGGTTTTTCTTCTATT+AGG | - | chr2_4:61089226-61089245 | Msa0339800:CDS | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | - | chr2_4:61089227-61089246 | Msa0339800:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | - | chr2_4:61089373-61089392 | Msa0339800:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | - | chr2_4:61089526-61089545 | Msa0339800:intron | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | - | chr2_4:61089567-61089586 | Msa0339800:intron | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | - | chr2_4:61089577-61089596 | Msa0339800:intron | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | + | chr2_4:61089608-61089627 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | + | chr2_4:61089636-61089655 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | - | chr2_4:61089680-61089699 | Msa0339800:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | - | chr2_4:61089904-61089923 | Msa0339800:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | - | chr2_4:61090010-61090029 | Msa0339800:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | - | chr2_4:61090110-61090129 | Msa0339800:CDS | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | + | chr2_4:61090154-61090173 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | - | chr2_4:61090308-61090327 | Msa0339800:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | + | chr2_4:61090365-61090384 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | - | chr2_4:61090469-61090488 | Msa0339800:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | - | chr2_4:61090470-61090489 | Msa0339800:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | - | chr2_4:61090621-61090640 | Msa0339800:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | - | chr2_4:61090622-61090641 | Msa0339800:CDS | 30.0% | |
| AATTCAATCAAAGCTCATGG+AGG | - | chr2_4:61089067-61089086 | Msa0339800:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | + | chr2_4:61089108-61089127 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | - | chr2_4:61089123-61089142 | Msa0339800:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | - | chr2_4:61089203-61089222 | Msa0339800:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | + | chr2_4:61089211-61089230 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | - | chr2_4:61089210-61089229 | Msa0339800:CDS | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | - | chr2_4:61089744-61089763 | Msa0339800:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | + | chr2_4:61089753-61089772 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | + | chr2_4:61090145-61090164 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | - | chr2_4:61090307-61090326 | Msa0339800:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | - | chr2_4:61090359-61090378 | Msa0339800:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | - | chr2_4:61090482-61090501 | Msa0339800:CDS | 35.0% |
| AATTCAATCAAAGCTCATGG+AGG | - | chr2_4:61089067-61089086 | Msa0339800:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | + | chr2_4:61089108-61089127 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | - | chr2_4:61089123-61089142 | Msa0339800:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | - | chr2_4:61089203-61089222 | Msa0339800:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | + | chr2_4:61089211-61089230 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | - | chr2_4:61089210-61089229 | Msa0339800:CDS | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | - | chr2_4:61089744-61089763 | Msa0339800:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | + | chr2_4:61089753-61089772 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | + | chr2_4:61090145-61090164 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | - | chr2_4:61090307-61090326 | Msa0339800:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | - | chr2_4:61090359-61090378 | Msa0339800:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | - | chr2_4:61090482-61090501 | Msa0339800:CDS | 35.0% |
| GAAGAAAAACCTCGTTCCAA+CGG | + | chr2_4:61089222-61089241 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | - | chr2_4:61089241-61089260 | Msa0339800:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | - | chr2_4:61089256-61089275 | Msa0339800:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | + | chr2_4:61089335-61089354 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | - | chr2_4:61089342-61089361 | Msa0339800:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | + | chr2_4:61089348-61089367 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | - | chr2_4:61089384-61089403 | Msa0339800:intron | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | - | chr2_4:61089439-61089458 | Msa0339800:intron | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | - | chr2_4:61089442-61089461 | Msa0339800:intron | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | - | chr2_4:61089443-61089462 | Msa0339800:intron | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | - | chr2_4:61089466-61089485 | Msa0339800:intron | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | + | chr2_4:61089700-61089719 | None:intergenic | 40.0% |
| GTGACTTTGCATCTCAAGTT+TGG | - | chr2_4:61090046-61090065 | Msa0339800:CDS | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | - | chr2_4:61090267-61090286 | Msa0339800:CDS | 40.0% |
| ! | TTTGCTATCTCAAGCCCAAT+TGG | - | chr2_4:61090395-61090414 | Msa0339800:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | + | chr2_4:61090412-61090431 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | + | chr2_4:61090413-61090432 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | + | chr2_4:61090571-61090590 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | + | chr2_4:61090584-61090603 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | - | chr2_4:61090590-61090609 | Msa0339800:CDS | 40.0% |
| GAAGAAAAACCTCGTTCCAA+CGG | + | chr2_4:61089222-61089241 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | - | chr2_4:61089241-61089260 | Msa0339800:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | - | chr2_4:61089256-61089275 | Msa0339800:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | + | chr2_4:61089335-61089354 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | - | chr2_4:61089342-61089361 | Msa0339800:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | + | chr2_4:61089348-61089367 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | - | chr2_4:61089384-61089403 | Msa0339800:intron | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | - | chr2_4:61089439-61089458 | Msa0339800:intron | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | - | chr2_4:61089442-61089461 | Msa0339800:intron | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | - | chr2_4:61089443-61089462 | Msa0339800:intron | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | - | chr2_4:61089466-61089485 | Msa0339800:intron | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | + | chr2_4:61089700-61089719 | None:intergenic | 40.0% |
| GTGACTTTGCATCTCAAGTT+TGG | - | chr2_4:61090046-61090065 | Msa0339800:CDS | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | - | chr2_4:61090267-61090286 | Msa0339800:CDS | 40.0% |
| ! | TTTGCTATCTCAAGCCCAAT+TGG | - | chr2_4:61090395-61090414 | Msa0339800:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | + | chr2_4:61090412-61090431 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | + | chr2_4:61090413-61090432 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | + | chr2_4:61090571-61090590 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | + | chr2_4:61090584-61090603 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | - | chr2_4:61090590-61090609 | Msa0339800:CDS | 40.0% |
| !! | GAACGTTGACTTTAGGGCTT+TGG | + | chr2_4:61089017-61089036 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | + | chr2_4:61089104-61089123 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | - | chr2_4:61089244-61089263 | Msa0339800:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | + | chr2_4:61089349-61089368 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | + | chr2_4:61089356-61089375 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | + | chr2_4:61089389-61089408 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | - | chr2_4:61089387-61089406 | Msa0339800:intron | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | - | chr2_4:61089429-61089448 | Msa0339800:intron | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | - | chr2_4:61089465-61089484 | Msa0339800:intron | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | - | chr2_4:61090255-61090274 | Msa0339800:CDS | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | - | chr2_4:61090258-61090277 | Msa0339800:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | - | chr2_4:61090445-61090464 | Msa0339800:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | - | chr2_4:61090570-61090589 | Msa0339800:CDS | 45.0% | |
| !! | GAACGTTGACTTTAGGGCTT+TGG | + | chr2_4:61089017-61089036 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | + | chr2_4:61089104-61089123 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | - | chr2_4:61089244-61089263 | Msa0339800:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | + | chr2_4:61089349-61089368 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | + | chr2_4:61089356-61089375 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | + | chr2_4:61089389-61089408 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | - | chr2_4:61089387-61089406 | Msa0339800:intron | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | - | chr2_4:61089429-61089448 | Msa0339800:intron | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | - | chr2_4:61089465-61089484 | Msa0339800:intron | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | - | chr2_4:61090255-61090274 | Msa0339800:CDS | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | - | chr2_4:61090258-61090277 | Msa0339800:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | - | chr2_4:61090445-61090464 | Msa0339800:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | - | chr2_4:61090570-61090589 | Msa0339800:CDS | 45.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | + | chr2_4:61089014-61089033 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | - | chr2_4:61089352-61089371 | Msa0339800:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | + | chr2_4:61089475-61089494 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | - | chr2_4:61089589-61089608 | Msa0339800:intron | 50.0% |
| ATCTCAAGCCCAATTGGCGT+AGG | - | chr2_4:61090401-61090420 | Msa0339800:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | - | chr2_4:61090407-61090426 | Msa0339800:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | - | chr2_4:61090435-61090454 | Msa0339800:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | - | chr2_4:61090540-61090559 | Msa0339800:CDS | 50.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | + | chr2_4:61089014-61089033 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | - | chr2_4:61089352-61089371 | Msa0339800:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | + | chr2_4:61089475-61089494 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | - | chr2_4:61089589-61089608 | Msa0339800:intron | 50.0% |
| ATCTCAAGCCCAATTGGCGT+AGG | - | chr2_4:61090401-61090420 | Msa0339800:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | - | chr2_4:61090407-61090426 | Msa0339800:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | - | chr2_4:61090435-61090454 | Msa0339800:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | - | chr2_4:61090540-61090559 | Msa0339800:CDS | 50.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | - | chr2_4:61089480-61089499 | Msa0339800:intron | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | + | chr2_4:61089497-61089516 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | - | chr2_4:61089598-61089617 | Msa0339800:intron | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | - | chr2_4:61090434-61090453 | Msa0339800:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | + | chr2_4:61090438-61090457 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | - | chr2_4:61090450-61090469 | Msa0339800:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | + | chr2_4:61090557-61090576 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | - | chr2_4:61090564-61090583 | Msa0339800:CDS | 55.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | - | chr2_4:61089480-61089499 | Msa0339800:intron | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | + | chr2_4:61089497-61089516 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | - | chr2_4:61089598-61089617 | Msa0339800:intron | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | - | chr2_4:61090434-61090453 | Msa0339800:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | + | chr2_4:61090438-61090457 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | - | chr2_4:61090450-61090469 | Msa0339800:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | + | chr2_4:61090557-61090576 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | - | chr2_4:61090564-61090583 | Msa0339800:CDS | 55.0% | |
| ! | GGGAACGACCGAGTTGGCGA+TGG | - | chr2_4:61089486-61089505 | Msa0339800:intron | 65.0% |
| ! | GGGAACGACCGAGTTGGCGA+TGG | - | chr2_4:61089486-61089505 | Msa0339800:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61089004 | 61090649 | 61089004 | ID=Msa0339800;Name=Msa0339800 |
| chr2_4 | mRNA | 61089004 | 61090649 | 61089004 | ID=Msa0339800-mRNA-1;Parent=Msa0339800;Name=Msa0339800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|335 |
| chr2_4 | exon | 61090034 | 61090649 | 61090034 | ID=Msa0339800-mRNA-1:exon:19122;Parent=Msa0339800-mRNA-1 |
| chr2_4 | exon | 61089004 | 61089395 | 61089004 | ID=Msa0339800-mRNA-1:exon:19121;Parent=Msa0339800-mRNA-1 |
| chr2_4 | CDS | 61090034 | 61090649 | 61090034 | ID=Msa0339800-mRNA-1:cds;Parent=Msa0339800-mRNA-1 |
| chr2_4 | CDS | 61089004 | 61089395 | 61089004 | ID=Msa0339800-mRNA-1:cds;Parent=Msa0339800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
