Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259930 | XP_003597387.1 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259930 | sp|Q94DG6|ZIP1_ORYSJ | 58.434 | 332 | 118 | 4 | 21 | 335 | 24 | 352 | 5.99e-137 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259930 | Q9AWG7 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0111780 | Msa0259930 | 0.806865 | 6.682662e-50 | -8.615850e-47 |
| Msa0227420 | Msa0259930 | 0.997821 | 6.698750e-250 | -8.615850e-47 |
| Msa0259930 | Msa0339800 | 0.991189 | 2.391806e-186 | -8.615850e-47 |
| Msa0259930 | Msa0387500 | 0.990109 | 4.218319e-181 | -8.615850e-47 |
| Msa0259930 | Msa0570600 | 0.816304 | 5.924576e-52 | -8.615850e-47 |
| Msa0259930 | Msa0655200 | 0.814753 | 1.311988e-51 | -8.615850e-47 |
| Msa0259930 | Msa0717860 | 0.813637 | 2.314006e-51 | -8.615850e-47 |
| Msa0259930 | Msa0753930 | 0.800531 | 1.379928e-48 | -8.615850e-47 |
| Msa0259930 | Msa0832950 | 0.820824 | 5.593732e-53 | -8.615850e-47 |
| Msa0259930 | Msa0838870 | 0.801813 | 7.542802e-49 | -8.615850e-47 |
| Msa0259930 | Msa0935840 | -0.805358 | 1.387170e-49 | -8.615850e-47 |
| Msa0259930 | Msa1008360 | 0.818812 | 1.612306e-52 | -8.615850e-47 |
| Msa0259930 | Msa1049970 | 0.820814 | 5.623043e-53 | -8.615850e-47 |
| Msa0259930 | Msa1132980 | 0.800762 | 1.237903e-48 | -8.615850e-47 |
| Msa0259930 | Msa1395250 | 0.800088 | 1.698174e-48 | -8.615850e-47 |
| Msa0259930 | Msa1432850 | 0.999446 | 2.337052e-312 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259930 | MtrunA17_Chr2g0328511 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Msa0259930 | MtrunA17_Chr3g0102071 | 57.980 | 307 | 115 | 5 | 41 | 335 | 45 | 349 | 2.61e-129 | 373 |
| Msa0259930 | MtrunA17_Chr4g0043491 | 21.910 | 356 | 249 | 12 | 1 | 334 | 1 | 349 | 2.73e-13 | 70.1 |
| Msa0259930 | MtrunA17_Chr3g0120341 | 24.351 | 308 | 199 | 10 | 31 | 310 | 31 | 332 | 3.92e-12 | 66.6 |
| Msa0259930 | MtrunA17_Chr3g0120361 | 23.913 | 322 | 209 | 11 | 43 | 334 | 56 | 371 | 1.25e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259930 | AT5G59520.1 | 58.974 | 351 | 125 | 5 | 3 | 335 | 4 | 353 | 4.53e-134 | 385 |
| Msa0259930 | AT1G55910.1 | 57.729 | 317 | 109 | 4 | 28 | 335 | 25 | 325 | 1.32e-132 | 381 |
| Msa0259930 | AT2G32270.1 | 24.633 | 341 | 225 | 12 | 11 | 334 | 13 | 338 | 1.50e-15 | 77.0 |
| Msa0259930 | AT2G04032.1 | 26.075 | 372 | 229 | 16 | 1 | 334 | 1 | 364 | 7.03e-15 | 75.1 |
| Msa0259930 | AT4G19690.2 | 22.159 | 352 | 250 | 10 | 1 | 334 | 1 | 346 | 2.05e-14 | 73.6 |
| Msa0259930 | AT4G19680.2 | 23.269 | 361 | 238 | 11 | 1 | 334 | 1 | 349 | 2.52e-13 | 70.5 |
| Msa0259930 | AT1G31260.1 | 21.067 | 356 | 248 | 8 | 9 | 334 | 11 | 363 | 4.61e-13 | 69.7 |
| Msa0259930 | AT3G12750.1 | 22.507 | 351 | 229 | 12 | 12 | 334 | 19 | 354 | 5.34e-12 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTGCTGTTGTTATTAA+TGG | 0.165665 | 2_2:-57380996 | None:intergenic |
| GGCATCGCCGTTGGAATTTC+AGG | 0.231489 | 2_2:+57380232 | Msa0259930:CDS |
| GCCTTCATGTTGGCTTGTTC+TGG | 0.231810 | 2_2:+57379986 | Msa0259930:CDS |
| AATAAGGAACGTTGACTTTA+GGG | 0.232919 | 2_2:-57379654 | None:intergenic |
| GTTTGGTCCTTGTTAAAATA+TGG | 0.282576 | 2_2:+57379774 | Msa0259930:CDS |
| AAATAAGGAACGTTGACTTT+AGG | 0.295702 | 2_2:-57379655 | None:intergenic |
| TAATTGCAGTTGTCATGATT+TGG | 0.312381 | 2_2:+57381255 | Msa0259930:CDS |
| CCCTTCTGTTGTTGCGTCGA+TGG | 0.338990 | 2_2:-57381069 | None:intergenic |
| GTTTCGACACTCCATGGTTT+AGG | 0.340853 | 2_2:+57381204 | Msa0259930:CDS |
| AGCCCAATTGGCGTAGGAAT+TGG | 0.343250 | 2_2:+57381041 | Msa0259930:CDS |
| ATTCCAATTCCTACGCCAAT+TGG | 0.349639 | 2_2:-57381044 | None:intergenic |
| AAATTTACGTTCGAGGAGTT+TGG | 0.351394 | 2_2:+57379757 | Msa0259930:CDS |
| TCGTTCCAACGGAAATAATA+AGG | 0.363463 | 2_2:-57379842 | None:intergenic |
| GAACGTTGACTTTAGGGCTT+TGG | 0.365709 | 2_2:-57379648 | None:intergenic |
| AGACTAAGAGACACAAAATA+AGG | 0.372662 | 2_2:-57379670 | None:intergenic |
| CTATTAGGGACACAATTTGC+TGG | 0.389492 | 2_2:+57379875 | Msa0259930:CDS |
| AATTGCAGTTGTCATGATTT+GGG | 0.398612 | 2_2:+57381256 | Msa0259930:CDS |
| ATCAATCATTTAATCTCTAA+AGG | 0.405525 | 2_2:+57381158 | Msa0259930:CDS |
| TTCATGAAGACTACTAATCT+TGG | 0.413670 | 2_2:+57380160 | Msa0259930:CDS |
| TTTGCTATCTCTAGCCCAAT+TGG | 0.420772 | 2_2:+57381029 | Msa0259930:CDS |
| TTCAATTCAATCAAAGCTCA+TGG | 0.442939 | 2_2:+57379698 | Msa0259930:CDS |
| CAAGCCAACATGAAGGCAAA+AGG | 0.443986 | 2_2:-57379980 | None:intergenic |
| TTGGATGTATGCAATATCAA+TGG | 0.451469 | 2_2:+57381103 | Msa0259930:CDS |
| CGAACGTAAATTTATGTTGT+CGG | 0.451852 | 2_2:-57379747 | None:intergenic |
| CGTTGACTTTAGGGCTTTGG+AGG | 0.455192 | 2_2:-57379645 | None:intergenic |
| TGTCTCCTTATTATTTCCGT+TGG | 0.456903 | 2_2:+57379837 | Msa0259930:CDS |
| AAGAAGCATGGAGGAATTTG+TGG | 0.466479 | 2_2:+57380901 | Msa0259930:CDS |
| AGCTTTGATTGAATTGAAGA+AGG | 0.475831 | 2_2:-57379693 | None:intergenic |
| TTCCAATTCCTACGCCAATT+GGG | 0.476127 | 2_2:-57381043 | None:intergenic |
| GAGAACACCTCAAGAAGAAG+AGG | 0.481872 | 2_2:+57380099 | Msa0259930:CDS |
| ACAACATAAATTTACGTTCG+AGG | 0.488053 | 2_2:+57379750 | Msa0259930:CDS |
| AATTTATGTTGTCGGAGTCA+TGG | 0.509180 | 2_2:-57379739 | None:intergenic |
| GATATTTGCTGCAATAGCAA+TGG | 0.517861 | 2_2:+57380941 | Msa0259930:CDS |
| ATATTTGCTGCAATAGCAAT+GGG | 0.519706 | 2_2:+57380942 | Msa0259930:CDS |
| TGGATGTATGCAATATCAAT+GGG | 0.524253 | 2_2:+57381104 | Msa0259930:CDS |
| GTCGTTCCCTCTTCTTCTTG+AGG | 0.530005 | 2_2:-57380106 | None:intergenic |
| AAATTAATGATCAGGTACTA+AGG | 0.530087 | 2_2:+57380878 | Msa0259930:intron |
| CAGAAGGGAGAACAGCGGAT+TGG | 0.535719 | 2_2:+57381084 | Msa0259930:CDS |
| AACCATGTTTGGTGATTGTG+TGG | 0.549871 | 2_2:+57380018 | Msa0259930:CDS |
| GCCATCGACGCAACAACAGA+AGG | 0.551024 | 2_2:+57381068 | Msa0259930:CDS |
| GCTAAAGTTGAGGAACTTGA+AGG | 0.551786 | 2_2:+57380073 | Msa0259930:CDS |
| GCTCTCATCCATCGCCAACT+CGG | 0.559618 | 2_2:-57380128 | None:intergenic |
| TAAACCATGGAGTGTCGAAA+CGG | 0.560955 | 2_2:-57381202 | None:intergenic |
| AAGCCAACATGAAGGCAAAA+GGG | 0.565308 | 2_2:-57379979 | None:intergenic |
| GGGAACGACCGAGTTGGCGA+TGG | 0.565946 | 2_2:+57380120 | Msa0259930:CDS |
| CACCACACAATCACCAAACA+TGG | 0.566132 | 2_2:-57380020 | None:intergenic |
| AGACCATTAATAACAACAGC+AGG | 0.566425 | 2_2:+57380993 | Msa0259930:CDS |
| CATGTTTGGTGATTGTGTGG+TGG | 0.584077 | 2_2:+57380021 | Msa0259930:CDS |
| AGAGCCGTTTCGACACTCCA+TGG | 0.586693 | 2_2:+57381198 | Msa0259930:CDS |
| TCCAGAACAAGCCAACATGA+AGG | 0.595290 | 2_2:-57379987 | None:intergenic |
| AAGTTGAGGAACTTGAAGGA+GGG | 0.602436 | 2_2:+57380077 | Msa0259930:CDS |
| TATGTTGTCGGAGTCATGGT+CGG | 0.603695 | 2_2:-57379735 | None:intergenic |
| TTAGGGACACAATTTGCTGG+TGG | 0.603967 | 2_2:+57379878 | Msa0259930:CDS |
| TGTAACAAGTAATAATCAGA+GGG | 0.605818 | 2_2:+57380048 | Msa0259930:CDS |
| AGAAGAGGGAACGACCGAGT+TGG | 0.611188 | 2_2:+57380114 | Msa0259930:CDS |
| AAAGTTGAGGAACTTGAAGG+AGG | 0.613893 | 2_2:+57380076 | Msa0259930:CDS |
| ATGTAACAAGTAATAATCAG+AGG | 0.621888 | 2_2:+57380047 | Msa0259930:CDS |
| AGAACACCTCAAGAAGAAGA+GGG | 0.622606 | 2_2:+57380100 | Msa0259930:CDS |
| ATCTCTAGCCCAATTGGCGT+AGG | 0.622666 | 2_2:+57381035 | Msa0259930:CDS |
| TTATTATTTCCGTTGGAACG+AGG | 0.624370 | 2_2:+57379844 | Msa0259930:CDS |
| CAGGTACTAAGGAAGAAGCA+TGG | 0.640699 | 2_2:+57380889 | Msa0259930:intron |
| CCATCGACGCAACAACAGAA+GGG | 0.642467 | 2_2:+57381069 | Msa0259930:CDS |
| TCAGAGGGAAGCTAAAGTTG+AGG | 0.644763 | 2_2:+57380063 | Msa0259930:CDS |
| TCGAAACGGCTCTTCCTCTG+CGG | 0.648000 | 2_2:-57381188 | None:intergenic |
| ATATCAATGGGTATTGCTTG+TGG | 0.657971 | 2_2:+57381116 | Msa0259930:CDS |
| GAAATAACCTGAAATTCCAA+CGG | 0.686017 | 2_2:-57380239 | None:intergenic |
| CTAAAGGCTTCAAACCGCAG+AGG | 0.686420 | 2_2:+57381174 | Msa0259930:CDS |
| ACAGCAAGAAACCTAAACCA+TGG | 0.706576 | 2_2:-57381215 | None:intergenic |
| AATTCAATCAAAGCTCATGG+AGG | 0.725080 | 2_2:+57379701 | Msa0259930:CDS |
| AACAACAGAAGGGAGAACAG+CGG | 0.747170 | 2_2:+57381079 | Msa0259930:CDS |
| GTACTAAGGAAGAAGCATGG+AGG | 0.765390 | 2_2:+57380892 | Msa0259930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTATTCGTATATAT+GGG | - | chr2_2:57380494-57380513 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | - | chr2_2:57380495-57380514 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | + | chr2_2:57380870-57380889 | Msa0259930:intron | 15.0% |
| !!! | TTTTAACTATTCGTATATAT+GGG | - | chr2_2:57380494-57380513 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | - | chr2_2:57380495-57380514 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | + | chr2_2:57380870-57380889 | Msa0259930:intron | 15.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | + | chr2_2:57380290-57380309 | Msa0259930:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | + | chr2_2:57380593-57380612 | Msa0259930:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | + | chr2_2:57380594-57380613 | Msa0259930:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | + | chr2_2:57380621-57380640 | Msa0259930:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | - | chr2_2:57380792-57380811 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | - | chr2_2:57380793-57380812 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | + | chr2_2:57381158-57381177 | Msa0259930:CDS | 20.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | + | chr2_2:57380290-57380309 | Msa0259930:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | + | chr2_2:57380593-57380612 | Msa0259930:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | + | chr2_2:57380594-57380613 | Msa0259930:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | + | chr2_2:57380621-57380640 | Msa0259930:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | - | chr2_2:57380792-57380811 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | - | chr2_2:57380793-57380812 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | + | chr2_2:57381158-57381177 | Msa0259930:CDS | 20.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | - | chr2_2:57379784-57379803 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | + | chr2_2:57379809-57379828 | Msa0259930:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | + | chr2_2:57380047-57380066 | Msa0259930:CDS | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | + | chr2_2:57380048-57380067 | Msa0259930:CDS | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | - | chr2_2:57380286-57380305 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | + | chr2_2:57380291-57380310 | Msa0259930:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | - | chr2_2:57380343-57380362 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | + | chr2_2:57380620-57380639 | Msa0259930:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | + | chr2_2:57380878-57380897 | Msa0259930:intron | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | - | chr2_2:57380990-57381009 | None:intergenic | 25.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | - | chr2_2:57379784-57379803 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | + | chr2_2:57379809-57379828 | Msa0259930:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | + | chr2_2:57380047-57380066 | Msa0259930:CDS | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | + | chr2_2:57380048-57380067 | Msa0259930:CDS | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | - | chr2_2:57380286-57380305 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | + | chr2_2:57380291-57380310 | Msa0259930:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | - | chr2_2:57380343-57380362 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | + | chr2_2:57380620-57380639 | Msa0259930:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | + | chr2_2:57380878-57380897 | Msa0259930:intron | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | - | chr2_2:57380990-57381009 | None:intergenic | 25.0% |
| !! | AATAAGGAACGTTGACTTTA+GGG | - | chr2_2:57379657-57379676 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | - | chr2_2:57379658-57379677 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | - | chr2_2:57379673-57379692 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | - | chr2_2:57379696-57379715 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | + | chr2_2:57379698-57379717 | Msa0259930:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | - | chr2_2:57379750-57379769 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | + | chr2_2:57379750-57379769 | Msa0259930:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | + | chr2_2:57379774-57379793 | Msa0259930:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | + | chr2_2:57379812-57379831 | Msa0259930:CDS | 30.0% |
| ! | AACGAGGTTTTTCTTCTATT+AGG | + | chr2_2:57379860-57379879 | Msa0259930:CDS | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | + | chr2_2:57379861-57379880 | Msa0259930:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | + | chr2_2:57380007-57380026 | Msa0259930:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | + | chr2_2:57380160-57380179 | Msa0259930:CDS | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | + | chr2_2:57380201-57380220 | Msa0259930:CDS | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | + | chr2_2:57380211-57380230 | Msa0259930:CDS | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | - | chr2_2:57380242-57380261 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | - | chr2_2:57380270-57380289 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | + | chr2_2:57380314-57380333 | Msa0259930:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | + | chr2_2:57380538-57380557 | Msa0259930:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | + | chr2_2:57380644-57380663 | Msa0259930:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | + | chr2_2:57380744-57380763 | Msa0259930:intron | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | - | chr2_2:57380788-57380807 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | + | chr2_2:57380942-57380961 | Msa0259930:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | - | chr2_2:57380999-57381018 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | + | chr2_2:57381103-57381122 | Msa0259930:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | + | chr2_2:57381104-57381123 | Msa0259930:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | + | chr2_2:57381255-57381274 | Msa0259930:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | + | chr2_2:57381256-57381275 | Msa0259930:CDS | 30.0% | |
| !! | AATAAGGAACGTTGACTTTA+GGG | - | chr2_2:57379657-57379676 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | - | chr2_2:57379658-57379677 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | - | chr2_2:57379673-57379692 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | - | chr2_2:57379696-57379715 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | + | chr2_2:57379698-57379717 | Msa0259930:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | - | chr2_2:57379750-57379769 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | + | chr2_2:57379750-57379769 | Msa0259930:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | + | chr2_2:57379774-57379793 | Msa0259930:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | + | chr2_2:57379812-57379831 | Msa0259930:CDS | 30.0% |
| ! | AACGAGGTTTTTCTTCTATT+AGG | + | chr2_2:57379860-57379879 | Msa0259930:CDS | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | + | chr2_2:57379861-57379880 | Msa0259930:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | + | chr2_2:57380007-57380026 | Msa0259930:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | + | chr2_2:57380160-57380179 | Msa0259930:CDS | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | + | chr2_2:57380201-57380220 | Msa0259930:CDS | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | + | chr2_2:57380211-57380230 | Msa0259930:CDS | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | - | chr2_2:57380242-57380261 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | - | chr2_2:57380270-57380289 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | + | chr2_2:57380314-57380333 | Msa0259930:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | + | chr2_2:57380538-57380557 | Msa0259930:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | + | chr2_2:57380644-57380663 | Msa0259930:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | + | chr2_2:57380744-57380763 | Msa0259930:intron | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | - | chr2_2:57380788-57380807 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | + | chr2_2:57380942-57380961 | Msa0259930:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | - | chr2_2:57380999-57381018 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | + | chr2_2:57381103-57381122 | Msa0259930:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | + | chr2_2:57381104-57381123 | Msa0259930:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | + | chr2_2:57381255-57381274 | Msa0259930:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | + | chr2_2:57381256-57381275 | Msa0259930:CDS | 30.0% | |
| AATTCAATCAAAGCTCATGG+AGG | + | chr2_2:57379701-57379720 | Msa0259930:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | - | chr2_2:57379742-57379761 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | + | chr2_2:57379757-57379776 | Msa0259930:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | + | chr2_2:57379837-57379856 | Msa0259930:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | - | chr2_2:57379845-57379864 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | + | chr2_2:57379844-57379863 | Msa0259930:CDS | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | + | chr2_2:57380378-57380397 | Msa0259930:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | - | chr2_2:57380387-57380406 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | - | chr2_2:57380779-57380798 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | + | chr2_2:57380941-57380960 | Msa0259930:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | + | chr2_2:57380993-57381012 | Msa0259930:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | + | chr2_2:57381116-57381135 | Msa0259930:CDS | 35.0% |
| AATTCAATCAAAGCTCATGG+AGG | + | chr2_2:57379701-57379720 | Msa0259930:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | - | chr2_2:57379742-57379761 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | + | chr2_2:57379757-57379776 | Msa0259930:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | + | chr2_2:57379837-57379856 | Msa0259930:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | - | chr2_2:57379845-57379864 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | + | chr2_2:57379844-57379863 | Msa0259930:CDS | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | + | chr2_2:57380378-57380397 | Msa0259930:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | - | chr2_2:57380387-57380406 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | - | chr2_2:57380779-57380798 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | + | chr2_2:57380941-57380960 | Msa0259930:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | + | chr2_2:57380993-57381012 | Msa0259930:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | + | chr2_2:57381116-57381135 | Msa0259930:CDS | 35.0% |
| GAAGAAAAACCTCGTTCCAA+CGG | - | chr2_2:57379856-57379875 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | + | chr2_2:57379875-57379894 | Msa0259930:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | + | chr2_2:57379890-57379909 | Msa0259930:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | - | chr2_2:57379969-57379988 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | + | chr2_2:57379976-57379995 | Msa0259930:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | - | chr2_2:57379982-57380001 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | + | chr2_2:57380018-57380037 | Msa0259930:CDS | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | + | chr2_2:57380073-57380092 | Msa0259930:CDS | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | + | chr2_2:57380076-57380095 | Msa0259930:CDS | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | + | chr2_2:57380077-57380096 | Msa0259930:CDS | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | + | chr2_2:57380100-57380119 | Msa0259930:CDS | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | - | chr2_2:57380334-57380353 | None:intergenic | 40.0% |
| CAAAGTCACATCTCACAAGT+AGG | - | chr2_2:57380718-57380737 | None:intergenic | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | + | chr2_2:57380680-57380699 | Msa0259930:intron | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | + | chr2_2:57380901-57380920 | Msa0259930:CDS | 40.0% |
| ! | TTTGCTATCTCTAGCCCAAT+TGG | + | chr2_2:57381029-57381048 | Msa0259930:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | - | chr2_2:57381046-57381065 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | - | chr2_2:57381047-57381066 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | - | chr2_2:57381205-57381224 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | - | chr2_2:57381218-57381237 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | + | chr2_2:57381224-57381243 | Msa0259930:CDS | 40.0% |
| GAAGAAAAACCTCGTTCCAA+CGG | - | chr2_2:57379856-57379875 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | + | chr2_2:57379875-57379894 | Msa0259930:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | + | chr2_2:57379890-57379909 | Msa0259930:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | - | chr2_2:57379969-57379988 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | + | chr2_2:57379976-57379995 | Msa0259930:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | - | chr2_2:57379982-57380001 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | + | chr2_2:57380018-57380037 | Msa0259930:CDS | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | + | chr2_2:57380073-57380092 | Msa0259930:CDS | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | + | chr2_2:57380076-57380095 | Msa0259930:CDS | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | + | chr2_2:57380077-57380096 | Msa0259930:CDS | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | + | chr2_2:57380100-57380119 | Msa0259930:CDS | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | - | chr2_2:57380334-57380353 | None:intergenic | 40.0% |
| CAAAGTCACATCTCACAAGT+AGG | - | chr2_2:57380718-57380737 | None:intergenic | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | + | chr2_2:57380680-57380699 | Msa0259930:intron | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | + | chr2_2:57380901-57380920 | Msa0259930:CDS | 40.0% |
| ! | TTTGCTATCTCTAGCCCAAT+TGG | + | chr2_2:57381029-57381048 | Msa0259930:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | - | chr2_2:57381046-57381065 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | - | chr2_2:57381047-57381066 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | - | chr2_2:57381205-57381224 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | - | chr2_2:57381218-57381237 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | + | chr2_2:57381224-57381243 | Msa0259930:CDS | 40.0% |
| !! | GAACGTTGACTTTAGGGCTT+TGG | - | chr2_2:57379651-57379670 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | - | chr2_2:57379738-57379757 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | + | chr2_2:57379878-57379897 | Msa0259930:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | - | chr2_2:57379983-57380002 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | - | chr2_2:57379990-57380009 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | - | chr2_2:57380023-57380042 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | + | chr2_2:57380021-57380040 | Msa0259930:CDS | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | + | chr2_2:57380063-57380082 | Msa0259930:CDS | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | + | chr2_2:57380099-57380118 | Msa0259930:CDS | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | + | chr2_2:57380889-57380908 | Msa0259930:intron | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | + | chr2_2:57380892-57380911 | Msa0259930:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | + | chr2_2:57381079-57381098 | Msa0259930:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | + | chr2_2:57381204-57381223 | Msa0259930:CDS | 45.0% | |
| !! | GAACGTTGACTTTAGGGCTT+TGG | - | chr2_2:57379651-57379670 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | - | chr2_2:57379738-57379757 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | + | chr2_2:57379878-57379897 | Msa0259930:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | - | chr2_2:57379983-57380002 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | - | chr2_2:57379990-57380009 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | - | chr2_2:57380023-57380042 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | + | chr2_2:57380021-57380040 | Msa0259930:CDS | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | + | chr2_2:57380063-57380082 | Msa0259930:CDS | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | + | chr2_2:57380099-57380118 | Msa0259930:CDS | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | + | chr2_2:57380889-57380908 | Msa0259930:intron | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | + | chr2_2:57380892-57380911 | Msa0259930:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | + | chr2_2:57381079-57381098 | Msa0259930:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | + | chr2_2:57381204-57381223 | Msa0259930:CDS | 45.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | - | chr2_2:57379648-57379667 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | + | chr2_2:57379986-57380005 | Msa0259930:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | - | chr2_2:57380109-57380128 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | + | chr2_2:57380223-57380242 | Msa0259930:CDS | 50.0% |
| ATCTCTAGCCCAATTGGCGT+AGG | + | chr2_2:57381035-57381054 | Msa0259930:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | + | chr2_2:57381041-57381060 | Msa0259930:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | + | chr2_2:57381069-57381088 | Msa0259930:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | + | chr2_2:57381174-57381193 | Msa0259930:CDS | 50.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | - | chr2_2:57379648-57379667 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | + | chr2_2:57379986-57380005 | Msa0259930:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | - | chr2_2:57380109-57380128 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | + | chr2_2:57380223-57380242 | Msa0259930:CDS | 50.0% |
| ATCTCTAGCCCAATTGGCGT+AGG | + | chr2_2:57381035-57381054 | Msa0259930:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | + | chr2_2:57381041-57381060 | Msa0259930:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | + | chr2_2:57381069-57381088 | Msa0259930:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | + | chr2_2:57381174-57381193 | Msa0259930:CDS | 50.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | + | chr2_2:57380114-57380133 | Msa0259930:CDS | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | - | chr2_2:57380131-57380150 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | + | chr2_2:57380232-57380251 | Msa0259930:CDS | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | + | chr2_2:57381068-57381087 | Msa0259930:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | - | chr2_2:57381072-57381091 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | + | chr2_2:57381084-57381103 | Msa0259930:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | - | chr2_2:57381191-57381210 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | + | chr2_2:57381198-57381217 | Msa0259930:CDS | 55.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | + | chr2_2:57380114-57380133 | Msa0259930:CDS | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | - | chr2_2:57380131-57380150 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | + | chr2_2:57380232-57380251 | Msa0259930:CDS | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | + | chr2_2:57381068-57381087 | Msa0259930:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | - | chr2_2:57381072-57381091 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | + | chr2_2:57381084-57381103 | Msa0259930:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | - | chr2_2:57381191-57381210 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | + | chr2_2:57381198-57381217 | Msa0259930:CDS | 55.0% | |
| ! | GGGAACGACCGAGTTGGCGA+TGG | + | chr2_2:57380120-57380139 | Msa0259930:CDS | 65.0% |
| ! | GGGAACGACCGAGTTGGCGA+TGG | + | chr2_2:57380120-57380139 | Msa0259930:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57379638 | 57381283 | 57379638 | ID=Msa0259930;Name=Msa0259930 |
| chr2_2 | mRNA | 57379638 | 57381283 | 57379638 | ID=Msa0259930-mRNA-1;Parent=Msa0259930;Name=Msa0259930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|335 |
| chr2_2 | exon | 57379638 | 57380253 | 57379638 | ID=Msa0259930-mRNA-1:exon:17406;Parent=Msa0259930-mRNA-1 |
| chr2_2 | exon | 57380892 | 57381283 | 57380892 | ID=Msa0259930-mRNA-1:exon:17407;Parent=Msa0259930-mRNA-1 |
| chr2_2 | CDS | 57379638 | 57380253 | 57379638 | ID=Msa0259930-mRNA-1:cds;Parent=Msa0259930-mRNA-1 |
| chr2_2 | CDS | 57380892 | 57381283 | 57380892 | ID=Msa0259930-mRNA-1:cds;Parent=Msa0259930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
