Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432850 | XP_003597387.1 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432850 | sp|Q94DG6|ZIP1_ORYSJ | 58.434 | 332 | 118 | 4 | 21 | 335 | 24 | 352 | 5.99e-137 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432850 | Q9AWG7 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0111780 | Msa1432850 | 0.808016 | 3.810079e-50 | -8.615850e-47 |
| Msa0655200 | Msa1432850 | 0.815581 | 8.591496e-52 | -8.615850e-47 |
| Msa0717860 | Msa1432850 | 0.812090 | 5.050381e-51 | -8.615850e-47 |
| Msa0731580 | Msa1432850 | 0.801224 | 9.958522e-49 | -8.615850e-47 |
| Msa0832950 | Msa1432850 | 0.820649 | 6.134714e-53 | -8.615850e-47 |
| Msa0838870 | Msa1432850 | 0.800801 | 1.215073e-48 | -8.615850e-47 |
| Msa0227420 | Msa1432850 | 0.998044 | 7.804854e-255 | -8.615850e-47 |
| Msa0366230 | Msa1432850 | 0.801717 | 7.892084e-49 | -8.615850e-47 |
| Msa0387500 | Msa1432850 | 0.990575 | 2.739088e-183 | -8.615850e-47 |
| Msa1008360 | Msa1432850 | 0.817272 | 3.593130e-52 | -8.615850e-47 |
| Msa1049970 | Msa1432850 | 0.819706 | 1.008869e-52 | -8.615850e-47 |
| Msa0259930 | Msa1432850 | 0.999446 | 2.337052e-312 | -8.615850e-47 |
| Msa0339800 | Msa1432850 | 0.991272 | 8.875651e-187 | -8.615850e-47 |
| Msa1132980 | Msa1432850 | 0.800051 | 1.728069e-48 | -8.615850e-47 |
| Msa0570600 | Msa1432850 | 0.817410 | 3.346467e-52 | -8.615850e-47 |
| Msa0935840 | Msa1432850 | -0.804596 | 2.002118e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432850 | MtrunA17_Chr2g0328511 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Msa1432850 | MtrunA17_Chr3g0102071 | 57.980 | 307 | 115 | 5 | 41 | 335 | 45 | 349 | 2.61e-129 | 373 |
| Msa1432850 | MtrunA17_Chr4g0043491 | 21.910 | 356 | 249 | 12 | 1 | 334 | 1 | 349 | 2.73e-13 | 70.1 |
| Msa1432850 | MtrunA17_Chr3g0120341 | 24.351 | 308 | 199 | 10 | 31 | 310 | 31 | 332 | 3.92e-12 | 66.6 |
| Msa1432850 | MtrunA17_Chr3g0120361 | 23.913 | 322 | 209 | 11 | 43 | 334 | 56 | 371 | 1.25e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432850 | AT5G59520.1 | 58.974 | 351 | 125 | 5 | 3 | 335 | 4 | 353 | 4.53e-134 | 385 |
| Msa1432850 | AT1G55910.1 | 57.729 | 317 | 109 | 4 | 28 | 335 | 25 | 325 | 1.32e-132 | 381 |
| Msa1432850 | AT2G32270.1 | 24.633 | 341 | 225 | 12 | 11 | 334 | 13 | 338 | 1.50e-15 | 77.0 |
| Msa1432850 | AT2G04032.1 | 26.075 | 372 | 229 | 16 | 1 | 334 | 1 | 364 | 7.03e-15 | 75.1 |
| Msa1432850 | AT4G19690.2 | 22.159 | 352 | 250 | 10 | 1 | 334 | 1 | 346 | 2.05e-14 | 73.6 |
| Msa1432850 | AT4G19680.2 | 23.269 | 361 | 238 | 11 | 1 | 334 | 1 | 349 | 2.52e-13 | 70.5 |
| Msa1432850 | AT1G31260.1 | 21.067 | 356 | 248 | 8 | 9 | 334 | 11 | 363 | 4.61e-13 | 69.7 |
| Msa1432850 | AT3G12750.1 | 22.507 | 351 | 229 | 12 | 12 | 334 | 19 | 354 | 5.34e-12 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTGCTGTTGTTATTAA+TGG | 0.165665 | tig0027183:-14648 | None:intergenic |
| GGCATCGCCGTTGGAATTTC+AGG | 0.231489 | tig0027183:+13884 | Msa1432850:CDS |
| GCCTTCATGTTGGCTTGTTC+TGG | 0.231810 | tig0027183:+13638 | Msa1432850:CDS |
| AATAAGGAACGTTGACTTTA+GGG | 0.232919 | tig0027183:-13306 | None:intergenic |
| GTTTGGTCCTTGTTAAAATA+TGG | 0.282576 | tig0027183:+13426 | Msa1432850:CDS |
| AAATAAGGAACGTTGACTTT+AGG | 0.295702 | tig0027183:-13307 | None:intergenic |
| TAATTGCAGTTGTCATGATT+TGG | 0.312381 | tig0027183:+14907 | Msa1432850:CDS |
| CCCTTCTGTTGTTGCGTCGA+TGG | 0.338990 | tig0027183:-14721 | None:intergenic |
| GTTTCGACACTCCATGGTTT+AGG | 0.340853 | tig0027183:+14856 | Msa1432850:CDS |
| AGCCCAATTGGCGTAGGAAT+TGG | 0.343250 | tig0027183:+14693 | Msa1432850:CDS |
| ATTCCAATTCCTACGCCAAT+TGG | 0.349639 | tig0027183:-14696 | None:intergenic |
| AAATTTACGTTCGAGGAGTT+TGG | 0.351394 | tig0027183:+13409 | Msa1432850:CDS |
| TCGTTCCAACGGAAATAATA+AGG | 0.363463 | tig0027183:-13494 | None:intergenic |
| GAACGTTGACTTTAGGGCTT+TGG | 0.365709 | tig0027183:-13300 | None:intergenic |
| AGACTAAGAGACACAAAATA+AGG | 0.372662 | tig0027183:-13322 | None:intergenic |
| CTATTAGGGACACAATTTGC+TGG | 0.389492 | tig0027183:+13527 | Msa1432850:CDS |
| AATTGCAGTTGTCATGATTT+GGG | 0.398612 | tig0027183:+14908 | Msa1432850:CDS |
| ATCAATCATTTAATCTCTAA+AGG | 0.405525 | tig0027183:+14810 | Msa1432850:CDS |
| TTCATGAAGACTACTAATCT+TGG | 0.413670 | tig0027183:+13812 | Msa1432850:CDS |
| TTTGCTATCTCTAGCCCAAT+TGG | 0.420772 | tig0027183:+14681 | Msa1432850:CDS |
| TTCAATTCAATCAAAGCTCA+TGG | 0.442939 | tig0027183:+13350 | Msa1432850:CDS |
| CAAGCCAACATGAAGGCAAA+AGG | 0.443986 | tig0027183:-13632 | None:intergenic |
| TTGGATGTATGCAATATCAA+TGG | 0.451469 | tig0027183:+14755 | Msa1432850:CDS |
| CGAACGTAAATTTATGTTGT+CGG | 0.451852 | tig0027183:-13399 | None:intergenic |
| CGTTGACTTTAGGGCTTTGG+AGG | 0.455192 | tig0027183:-13297 | None:intergenic |
| TGTCTCCTTATTATTTCCGT+TGG | 0.456903 | tig0027183:+13489 | Msa1432850:CDS |
| AAGAAGCATGGAGGAATTTG+TGG | 0.466479 | tig0027183:+14553 | Msa1432850:CDS |
| AGCTTTGATTGAATTGAAGA+AGG | 0.475831 | tig0027183:-13345 | None:intergenic |
| TTCCAATTCCTACGCCAATT+GGG | 0.476127 | tig0027183:-14695 | None:intergenic |
| GAGAACACCTCAAGAAGAAG+AGG | 0.481872 | tig0027183:+13751 | Msa1432850:CDS |
| ACAACATAAATTTACGTTCG+AGG | 0.488053 | tig0027183:+13402 | Msa1432850:CDS |
| AATTTATGTTGTCGGAGTCA+TGG | 0.509180 | tig0027183:-13391 | None:intergenic |
| GATATTTGCTGCAATAGCAA+TGG | 0.517861 | tig0027183:+14593 | Msa1432850:CDS |
| ATATTTGCTGCAATAGCAAT+GGG | 0.519706 | tig0027183:+14594 | Msa1432850:CDS |
| TGGATGTATGCAATATCAAT+GGG | 0.524253 | tig0027183:+14756 | Msa1432850:CDS |
| GTCGTTCCCTCTTCTTCTTG+AGG | 0.530005 | tig0027183:-13758 | None:intergenic |
| AAATTAATGATCAGGTACTA+AGG | 0.530087 | tig0027183:+14530 | Msa1432850:intron |
| CAGAAGGGAGAACAGCGGAT+TGG | 0.535719 | tig0027183:+14736 | Msa1432850:CDS |
| AACCATGTTTGGTGATTGTG+TGG | 0.549871 | tig0027183:+13670 | Msa1432850:CDS |
| GCCATCGACGCAACAACAGA+AGG | 0.551024 | tig0027183:+14720 | Msa1432850:CDS |
| GCTAAAGTTGAGGAACTTGA+AGG | 0.551786 | tig0027183:+13725 | Msa1432850:CDS |
| GCTCTCATCCATCGCCAACT+CGG | 0.559618 | tig0027183:-13780 | None:intergenic |
| TAAACCATGGAGTGTCGAAA+CGG | 0.560955 | tig0027183:-14854 | None:intergenic |
| AAGCCAACATGAAGGCAAAA+GGG | 0.565308 | tig0027183:-13631 | None:intergenic |
| GGGAACGACCGAGTTGGCGA+TGG | 0.565946 | tig0027183:+13772 | Msa1432850:CDS |
| CACCACACAATCACCAAACA+TGG | 0.566132 | tig0027183:-13672 | None:intergenic |
| AGACCATTAATAACAACAGC+AGG | 0.566425 | tig0027183:+14645 | Msa1432850:CDS |
| CATGTTTGGTGATTGTGTGG+TGG | 0.584077 | tig0027183:+13673 | Msa1432850:CDS |
| AGAGCCGTTTCGACACTCCA+TGG | 0.586693 | tig0027183:+14850 | Msa1432850:CDS |
| TCCAGAACAAGCCAACATGA+AGG | 0.595290 | tig0027183:-13639 | None:intergenic |
| AAGTTGAGGAACTTGAAGGA+GGG | 0.602436 | tig0027183:+13729 | Msa1432850:CDS |
| TATGTTGTCGGAGTCATGGT+CGG | 0.603695 | tig0027183:-13387 | None:intergenic |
| TTAGGGACACAATTTGCTGG+TGG | 0.603967 | tig0027183:+13530 | Msa1432850:CDS |
| TGTAACAAGTAATAATCAGA+GGG | 0.605818 | tig0027183:+13700 | Msa1432850:CDS |
| AGAAGAGGGAACGACCGAGT+TGG | 0.611188 | tig0027183:+13766 | Msa1432850:CDS |
| AAAGTTGAGGAACTTGAAGG+AGG | 0.613893 | tig0027183:+13728 | Msa1432850:CDS |
| ATGTAACAAGTAATAATCAG+AGG | 0.621888 | tig0027183:+13699 | Msa1432850:CDS |
| AGAACACCTCAAGAAGAAGA+GGG | 0.622606 | tig0027183:+13752 | Msa1432850:CDS |
| ATCTCTAGCCCAATTGGCGT+AGG | 0.622666 | tig0027183:+14687 | Msa1432850:CDS |
| TTATTATTTCCGTTGGAACG+AGG | 0.624370 | tig0027183:+13496 | Msa1432850:CDS |
| CAGGTACTAAGGAAGAAGCA+TGG | 0.640699 | tig0027183:+14541 | Msa1432850:intron |
| CCATCGACGCAACAACAGAA+GGG | 0.642467 | tig0027183:+14721 | Msa1432850:CDS |
| TCAGAGGGAAGCTAAAGTTG+AGG | 0.644763 | tig0027183:+13715 | Msa1432850:CDS |
| TCGAAACGGCTCTTCCTCTG+CGG | 0.648000 | tig0027183:-14840 | None:intergenic |
| ATATCAATGGGTATTGCTTG+TGG | 0.657971 | tig0027183:+14768 | Msa1432850:CDS |
| GAAATAACCTGAAATTCCAA+CGG | 0.686017 | tig0027183:-13891 | None:intergenic |
| CTAAAGGCTTCAAACCGCAG+AGG | 0.686420 | tig0027183:+14826 | Msa1432850:CDS |
| ACAGCAAGAAACCTAAACCA+TGG | 0.706576 | tig0027183:-14867 | None:intergenic |
| AATTCAATCAAAGCTCATGG+AGG | 0.725080 | tig0027183:+13353 | Msa1432850:CDS |
| AACAACAGAAGGGAGAACAG+CGG | 0.747170 | tig0027183:+14731 | Msa1432850:CDS |
| GTACTAAGGAAGAAGCATGG+AGG | 0.765390 | tig0027183:+14544 | Msa1432850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTATTCGTATATAT+GGG | - | tig0027183:14146-14165 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | - | tig0027183:14147-14166 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | + | tig0027183:14522-14541 | Msa1432850:intron | 15.0% |
| !!! | TTTTAACTATTCGTATATAT+GGG | - | tig0027183:14146-14165 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | - | tig0027183:14147-14166 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | + | tig0027183:14522-14541 | Msa1432850:intron | 15.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | + | tig0027183:13942-13961 | Msa1432850:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | + | tig0027183:14245-14264 | Msa1432850:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | + | tig0027183:14246-14265 | Msa1432850:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | + | tig0027183:14273-14292 | Msa1432850:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | - | tig0027183:14444-14463 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | - | tig0027183:14445-14464 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | + | tig0027183:14810-14829 | Msa1432850:CDS | 20.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | + | tig0027183:13942-13961 | Msa1432850:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | + | tig0027183:14245-14264 | Msa1432850:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | + | tig0027183:14246-14265 | Msa1432850:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | + | tig0027183:14273-14292 | Msa1432850:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | - | tig0027183:14444-14463 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | - | tig0027183:14445-14464 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | + | tig0027183:14810-14829 | Msa1432850:CDS | 20.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | - | tig0027183:13436-13455 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | + | tig0027183:13461-13480 | Msa1432850:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | + | tig0027183:13699-13718 | Msa1432850:CDS | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | + | tig0027183:13700-13719 | Msa1432850:CDS | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | - | tig0027183:13938-13957 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | + | tig0027183:13943-13962 | Msa1432850:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | - | tig0027183:13995-14014 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | + | tig0027183:14272-14291 | Msa1432850:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | + | tig0027183:14530-14549 | Msa1432850:intron | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | - | tig0027183:14642-14661 | None:intergenic | 25.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | - | tig0027183:13436-13455 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | + | tig0027183:13461-13480 | Msa1432850:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | + | tig0027183:13699-13718 | Msa1432850:CDS | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | + | tig0027183:13700-13719 | Msa1432850:CDS | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | - | tig0027183:13938-13957 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | + | tig0027183:13943-13962 | Msa1432850:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | - | tig0027183:13995-14014 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | + | tig0027183:14272-14291 | Msa1432850:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | + | tig0027183:14530-14549 | Msa1432850:intron | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | - | tig0027183:14642-14661 | None:intergenic | 25.0% |
| !! | AATAAGGAACGTTGACTTTA+GGG | - | tig0027183:13309-13328 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | - | tig0027183:13310-13329 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | - | tig0027183:13325-13344 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | - | tig0027183:13348-13367 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | + | tig0027183:13350-13369 | Msa1432850:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | - | tig0027183:13402-13421 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | + | tig0027183:13402-13421 | Msa1432850:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | + | tig0027183:13426-13445 | Msa1432850:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | + | tig0027183:13464-13483 | Msa1432850:CDS | 30.0% |
| ! | AACGAGGTTTTTCTTCTATT+AGG | + | tig0027183:13512-13531 | Msa1432850:CDS | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | + | tig0027183:13513-13532 | Msa1432850:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | + | tig0027183:13659-13678 | Msa1432850:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | + | tig0027183:13812-13831 | Msa1432850:CDS | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | + | tig0027183:13853-13872 | Msa1432850:CDS | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | + | tig0027183:13863-13882 | Msa1432850:CDS | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | - | tig0027183:13894-13913 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | - | tig0027183:13922-13941 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | + | tig0027183:13966-13985 | Msa1432850:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | + | tig0027183:14190-14209 | Msa1432850:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | + | tig0027183:14296-14315 | Msa1432850:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | + | tig0027183:14396-14415 | Msa1432850:intron | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | - | tig0027183:14440-14459 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | + | tig0027183:14594-14613 | Msa1432850:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | - | tig0027183:14651-14670 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | + | tig0027183:14755-14774 | Msa1432850:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | + | tig0027183:14756-14775 | Msa1432850:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | + | tig0027183:14907-14926 | Msa1432850:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | + | tig0027183:14908-14927 | Msa1432850:CDS | 30.0% | |
| !! | AATAAGGAACGTTGACTTTA+GGG | - | tig0027183:13309-13328 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | - | tig0027183:13310-13329 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | - | tig0027183:13325-13344 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | - | tig0027183:13348-13367 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | + | tig0027183:13350-13369 | Msa1432850:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | - | tig0027183:13402-13421 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | + | tig0027183:13402-13421 | Msa1432850:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | + | tig0027183:13426-13445 | Msa1432850:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | + | tig0027183:13464-13483 | Msa1432850:CDS | 30.0% |
| ! | AACGAGGTTTTTCTTCTATT+AGG | + | tig0027183:13512-13531 | Msa1432850:CDS | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | + | tig0027183:13513-13532 | Msa1432850:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | + | tig0027183:13659-13678 | Msa1432850:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | + | tig0027183:13812-13831 | Msa1432850:CDS | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | + | tig0027183:13853-13872 | Msa1432850:CDS | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | + | tig0027183:13863-13882 | Msa1432850:CDS | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | - | tig0027183:13894-13913 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | - | tig0027183:13922-13941 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | + | tig0027183:13966-13985 | Msa1432850:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | + | tig0027183:14190-14209 | Msa1432850:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | + | tig0027183:14296-14315 | Msa1432850:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | + | tig0027183:14396-14415 | Msa1432850:intron | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | - | tig0027183:14440-14459 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | + | tig0027183:14594-14613 | Msa1432850:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | - | tig0027183:14651-14670 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | + | tig0027183:14755-14774 | Msa1432850:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | + | tig0027183:14756-14775 | Msa1432850:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | + | tig0027183:14907-14926 | Msa1432850:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | + | tig0027183:14908-14927 | Msa1432850:CDS | 30.0% | |
| AATTCAATCAAAGCTCATGG+AGG | + | tig0027183:13353-13372 | Msa1432850:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | - | tig0027183:13394-13413 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | + | tig0027183:13409-13428 | Msa1432850:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | + | tig0027183:13489-13508 | Msa1432850:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | - | tig0027183:13497-13516 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | + | tig0027183:13496-13515 | Msa1432850:CDS | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | + | tig0027183:14030-14049 | Msa1432850:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | - | tig0027183:14039-14058 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | - | tig0027183:14431-14450 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | + | tig0027183:14593-14612 | Msa1432850:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | + | tig0027183:14645-14664 | Msa1432850:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | + | tig0027183:14768-14787 | Msa1432850:CDS | 35.0% |
| AATTCAATCAAAGCTCATGG+AGG | + | tig0027183:13353-13372 | Msa1432850:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | - | tig0027183:13394-13413 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | + | tig0027183:13409-13428 | Msa1432850:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | + | tig0027183:13489-13508 | Msa1432850:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | - | tig0027183:13497-13516 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | + | tig0027183:13496-13515 | Msa1432850:CDS | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | + | tig0027183:14030-14049 | Msa1432850:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | - | tig0027183:14039-14058 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | - | tig0027183:14431-14450 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | + | tig0027183:14593-14612 | Msa1432850:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | + | tig0027183:14645-14664 | Msa1432850:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | + | tig0027183:14768-14787 | Msa1432850:CDS | 35.0% |
| GAAGAAAAACCTCGTTCCAA+CGG | - | tig0027183:13508-13527 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | + | tig0027183:13527-13546 | Msa1432850:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | + | tig0027183:13542-13561 | Msa1432850:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | - | tig0027183:13621-13640 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | + | tig0027183:13628-13647 | Msa1432850:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | - | tig0027183:13634-13653 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | + | tig0027183:13670-13689 | Msa1432850:CDS | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | + | tig0027183:13725-13744 | Msa1432850:CDS | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | + | tig0027183:13728-13747 | Msa1432850:CDS | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | + | tig0027183:13729-13748 | Msa1432850:CDS | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | + | tig0027183:13752-13771 | Msa1432850:CDS | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | - | tig0027183:13986-14005 | None:intergenic | 40.0% |
| CAAAGTCACATCTCACAAGT+AGG | - | tig0027183:14370-14389 | None:intergenic | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | + | tig0027183:14332-14351 | Msa1432850:intron | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | + | tig0027183:14553-14572 | Msa1432850:CDS | 40.0% |
| ! | TTTGCTATCTCTAGCCCAAT+TGG | + | tig0027183:14681-14700 | Msa1432850:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | - | tig0027183:14698-14717 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | - | tig0027183:14699-14718 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | - | tig0027183:14857-14876 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | - | tig0027183:14870-14889 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | + | tig0027183:14876-14895 | Msa1432850:CDS | 40.0% |
| GAAGAAAAACCTCGTTCCAA+CGG | - | tig0027183:13508-13527 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | + | tig0027183:13527-13546 | Msa1432850:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | + | tig0027183:13542-13561 | Msa1432850:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | - | tig0027183:13621-13640 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | + | tig0027183:13628-13647 | Msa1432850:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | - | tig0027183:13634-13653 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | + | tig0027183:13670-13689 | Msa1432850:CDS | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | + | tig0027183:13725-13744 | Msa1432850:CDS | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | + | tig0027183:13728-13747 | Msa1432850:CDS | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | + | tig0027183:13729-13748 | Msa1432850:CDS | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | + | tig0027183:13752-13771 | Msa1432850:CDS | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | - | tig0027183:13986-14005 | None:intergenic | 40.0% |
| CAAAGTCACATCTCACAAGT+AGG | - | tig0027183:14370-14389 | None:intergenic | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | + | tig0027183:14332-14351 | Msa1432850:intron | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | + | tig0027183:14553-14572 | Msa1432850:CDS | 40.0% |
| ! | TTTGCTATCTCTAGCCCAAT+TGG | + | tig0027183:14681-14700 | Msa1432850:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | - | tig0027183:14698-14717 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | - | tig0027183:14699-14718 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | - | tig0027183:14857-14876 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | - | tig0027183:14870-14889 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | + | tig0027183:14876-14895 | Msa1432850:CDS | 40.0% |
| !! | GAACGTTGACTTTAGGGCTT+TGG | - | tig0027183:13303-13322 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | - | tig0027183:13390-13409 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | + | tig0027183:13530-13549 | Msa1432850:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | - | tig0027183:13635-13654 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | - | tig0027183:13642-13661 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | - | tig0027183:13675-13694 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | + | tig0027183:13673-13692 | Msa1432850:CDS | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | + | tig0027183:13715-13734 | Msa1432850:CDS | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | + | tig0027183:13751-13770 | Msa1432850:CDS | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | + | tig0027183:14541-14560 | Msa1432850:intron | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | + | tig0027183:14544-14563 | Msa1432850:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | + | tig0027183:14731-14750 | Msa1432850:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | + | tig0027183:14856-14875 | Msa1432850:CDS | 45.0% | |
| !! | GAACGTTGACTTTAGGGCTT+TGG | - | tig0027183:13303-13322 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | - | tig0027183:13390-13409 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | + | tig0027183:13530-13549 | Msa1432850:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | - | tig0027183:13635-13654 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | - | tig0027183:13642-13661 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | - | tig0027183:13675-13694 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | + | tig0027183:13673-13692 | Msa1432850:CDS | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | + | tig0027183:13715-13734 | Msa1432850:CDS | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | + | tig0027183:13751-13770 | Msa1432850:CDS | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | + | tig0027183:14541-14560 | Msa1432850:intron | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | + | tig0027183:14544-14563 | Msa1432850:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | + | tig0027183:14731-14750 | Msa1432850:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | + | tig0027183:14856-14875 | Msa1432850:CDS | 45.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | - | tig0027183:13300-13319 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | + | tig0027183:13638-13657 | Msa1432850:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | - | tig0027183:13761-13780 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | + | tig0027183:13875-13894 | Msa1432850:CDS | 50.0% |
| ATCTCTAGCCCAATTGGCGT+AGG | + | tig0027183:14687-14706 | Msa1432850:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | + | tig0027183:14693-14712 | Msa1432850:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | + | tig0027183:14721-14740 | Msa1432850:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | + | tig0027183:14826-14845 | Msa1432850:CDS | 50.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | - | tig0027183:13300-13319 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | + | tig0027183:13638-13657 | Msa1432850:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | - | tig0027183:13761-13780 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | + | tig0027183:13875-13894 | Msa1432850:CDS | 50.0% |
| ATCTCTAGCCCAATTGGCGT+AGG | + | tig0027183:14687-14706 | Msa1432850:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | + | tig0027183:14693-14712 | Msa1432850:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | + | tig0027183:14721-14740 | Msa1432850:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | + | tig0027183:14826-14845 | Msa1432850:CDS | 50.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | + | tig0027183:13766-13785 | Msa1432850:CDS | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | - | tig0027183:13783-13802 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | + | tig0027183:13884-13903 | Msa1432850:CDS | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | + | tig0027183:14720-14739 | Msa1432850:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | - | tig0027183:14724-14743 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | + | tig0027183:14736-14755 | Msa1432850:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | - | tig0027183:14843-14862 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | + | tig0027183:14850-14869 | Msa1432850:CDS | 55.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | + | tig0027183:13766-13785 | Msa1432850:CDS | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | - | tig0027183:13783-13802 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | + | tig0027183:13884-13903 | Msa1432850:CDS | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | + | tig0027183:14720-14739 | Msa1432850:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | - | tig0027183:14724-14743 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | + | tig0027183:14736-14755 | Msa1432850:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | - | tig0027183:14843-14862 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | + | tig0027183:14850-14869 | Msa1432850:CDS | 55.0% | |
| ! | GGGAACGACCGAGTTGGCGA+TGG | + | tig0027183:13772-13791 | Msa1432850:CDS | 65.0% |
| ! | GGGAACGACCGAGTTGGCGA+TGG | + | tig0027183:13772-13791 | Msa1432850:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027183 | gene | 13290 | 14935 | 13290 | ID=Msa1432850;Name=Msa1432850 |
| tig0027183 | mRNA | 13290 | 14935 | 13290 | ID=Msa1432850-mRNA-1;Parent=Msa1432850;Name=Msa1432850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|335 |
| tig0027183 | exon | 13290 | 13905 | 13290 | ID=Msa1432850-mRNA-1:exon:8324;Parent=Msa1432850-mRNA-1 |
| tig0027183 | exon | 14544 | 14935 | 14544 | ID=Msa1432850-mRNA-1:exon:8325;Parent=Msa1432850-mRNA-1 |
| tig0027183 | CDS | 13290 | 13905 | 13290 | ID=Msa1432850-mRNA-1:cds;Parent=Msa1432850-mRNA-1 |
| tig0027183 | CDS | 14544 | 14935 | 14544 | ID=Msa1432850-mRNA-1:cds;Parent=Msa1432850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
