Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227420 | XP_003597387.1 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227420 | sp|Q94DG6|ZIP1_ORYSJ | 58.434 | 332 | 118 | 4 | 21 | 335 | 24 | 352 | 5.99e-137 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227420 | Q9AWG7 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0111780 | Msa0227420 | 0.807651 | 4.555380e-50 | -8.615850e-47 |
| Msa0227420 | Msa0259930 | 0.997821 | 6.698750e-250 | -8.615850e-47 |
| Msa0227420 | Msa0339800 | 0.990456 | 1.011497e-182 | -8.615850e-47 |
| Msa0227420 | Msa0366230 | 0.801297 | 9.622878e-49 | -8.615850e-47 |
| Msa0227420 | Msa0387500 | 0.993318 | 6.548256e-199 | -8.615850e-47 |
| Msa0227420 | Msa0570600 | 0.818607 | 1.794794e-52 | -8.615850e-47 |
| Msa0227420 | Msa0655200 | 0.815681 | 8.162058e-52 | -8.615850e-47 |
| Msa0227420 | Msa0717860 | 0.811012 | 8.661785e-51 | -8.615850e-47 |
| Msa0227420 | Msa0731580 | 0.802003 | 6.893655e-49 | -8.615850e-47 |
| Msa0227420 | Msa0832950 | 0.817544 | 3.120381e-52 | -8.615850e-47 |
| Msa0227420 | Msa0935840 | -0.805089 | 1.579927e-49 | -8.615850e-47 |
| Msa0227420 | Msa1008360 | 0.818650 | 1.754309e-52 | -8.615850e-47 |
| Msa0227420 | Msa1049970 | 0.820900 | 5.372121e-53 | -8.615850e-47 |
| Msa0227420 | Msa1432850 | 0.998044 | 7.804854e-255 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227420 | MtrunA17_Chr2g0328511 | 97.321 | 336 | 8 | 1 | 1 | 335 | 1 | 336 | 0.0 | 669 |
| Msa0227420 | MtrunA17_Chr3g0102071 | 57.980 | 307 | 115 | 5 | 41 | 335 | 45 | 349 | 2.61e-129 | 373 |
| Msa0227420 | MtrunA17_Chr4g0043491 | 21.910 | 356 | 249 | 12 | 1 | 334 | 1 | 349 | 2.73e-13 | 70.1 |
| Msa0227420 | MtrunA17_Chr3g0120341 | 24.351 | 308 | 199 | 10 | 31 | 310 | 31 | 332 | 3.92e-12 | 66.6 |
| Msa0227420 | MtrunA17_Chr3g0120361 | 23.913 | 322 | 209 | 11 | 43 | 334 | 56 | 371 | 1.25e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0227420 | AT5G59520.1 | 58.974 | 351 | 125 | 5 | 3 | 335 | 4 | 353 | 4.53e-134 | 385 |
| Msa0227420 | AT1G55910.1 | 57.729 | 317 | 109 | 4 | 28 | 335 | 25 | 325 | 1.32e-132 | 381 |
| Msa0227420 | AT2G32270.1 | 24.633 | 341 | 225 | 12 | 11 | 334 | 13 | 338 | 1.50e-15 | 77.0 |
| Msa0227420 | AT2G04032.1 | 26.075 | 372 | 229 | 16 | 1 | 334 | 1 | 364 | 7.03e-15 | 75.1 |
| Msa0227420 | AT4G19690.2 | 22.159 | 352 | 250 | 10 | 1 | 334 | 1 | 346 | 2.05e-14 | 73.6 |
| Msa0227420 | AT4G19680.2 | 23.269 | 361 | 238 | 11 | 1 | 334 | 1 | 349 | 2.52e-13 | 70.5 |
| Msa0227420 | AT1G31260.1 | 21.067 | 356 | 248 | 8 | 9 | 334 | 11 | 363 | 4.61e-13 | 69.7 |
| Msa0227420 | AT3G12750.1 | 22.507 | 351 | 229 | 12 | 12 | 334 | 19 | 354 | 5.34e-12 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTGCTGTTGTTATTAA+TGG | 0.165665 | 2_1:-78336610 | None:intergenic |
| GGCATCGCCGTTGGAATTTC+AGG | 0.231489 | 2_1:+78335846 | Msa0227420:CDS |
| GCCTTCATGTTGGCTTGTTC+TGG | 0.231810 | 2_1:+78335600 | Msa0227420:CDS |
| AATAAGGAACGTTGACTTTA+GGG | 0.232919 | 2_1:-78335268 | None:intergenic |
| GTTTGGTCCTTGTTAAAATA+TGG | 0.282576 | 2_1:+78335388 | Msa0227420:CDS |
| AAATAAGGAACGTTGACTTT+AGG | 0.295702 | 2_1:-78335269 | None:intergenic |
| TAATTGCAGTTGTCATGATT+TGG | 0.312381 | 2_1:+78336869 | Msa0227420:CDS |
| CCCTTCTGTTGTTGCGTCGA+TGG | 0.338990 | 2_1:-78336683 | None:intergenic |
| GTTTCGACACTCCATGGTTT+AGG | 0.340853 | 2_1:+78336818 | Msa0227420:CDS |
| AGCCCAATTGGCGTAGGAAT+TGG | 0.343250 | 2_1:+78336655 | Msa0227420:CDS |
| ATTCCAATTCCTACGCCAAT+TGG | 0.349639 | 2_1:-78336658 | None:intergenic |
| AAATTTACGTTCGAGGAGTT+TGG | 0.351394 | 2_1:+78335371 | Msa0227420:CDS |
| TCGTTCCAACGGAAATAATA+AGG | 0.363463 | 2_1:-78335456 | None:intergenic |
| GAACGTTGACTTTAGGGCTT+TGG | 0.365709 | 2_1:-78335262 | None:intergenic |
| AGACTAAGAGACACAAAATA+AGG | 0.372662 | 2_1:-78335284 | None:intergenic |
| CTATTAGGGACACAATTTGC+TGG | 0.389492 | 2_1:+78335489 | Msa0227420:CDS |
| AATTGCAGTTGTCATGATTT+GGG | 0.398612 | 2_1:+78336870 | Msa0227420:CDS |
| ATCAATCATTTAATCTCTAA+AGG | 0.405525 | 2_1:+78336772 | Msa0227420:CDS |
| TTCATGAAGACTACTAATCT+TGG | 0.413670 | 2_1:+78335774 | Msa0227420:CDS |
| TTTGCTATCTCTAGCCCAAT+TGG | 0.420772 | 2_1:+78336643 | Msa0227420:CDS |
| TTCAATTCAATCAAAGCTCA+TGG | 0.442939 | 2_1:+78335312 | Msa0227420:CDS |
| CAAGCCAACATGAAGGCAAA+AGG | 0.443986 | 2_1:-78335594 | None:intergenic |
| TTGGATGTATGCAATATCAA+TGG | 0.451469 | 2_1:+78336717 | Msa0227420:CDS |
| CGAACGTAAATTTATGTTGT+CGG | 0.451852 | 2_1:-78335361 | None:intergenic |
| CGTTGACTTTAGGGCTTTGG+AGG | 0.455192 | 2_1:-78335259 | None:intergenic |
| TGTCTCCTTATTATTTCCGT+TGG | 0.456903 | 2_1:+78335451 | Msa0227420:CDS |
| AAGAAGCATGGAGGAATTTG+TGG | 0.466479 | 2_1:+78336515 | Msa0227420:CDS |
| AGCTTTGATTGAATTGAAGA+AGG | 0.475831 | 2_1:-78335307 | None:intergenic |
| TTCCAATTCCTACGCCAATT+GGG | 0.476127 | 2_1:-78336657 | None:intergenic |
| GAGAACACCTCAAGAAGAAG+AGG | 0.481872 | 2_1:+78335713 | Msa0227420:CDS |
| ACAACATAAATTTACGTTCG+AGG | 0.488053 | 2_1:+78335364 | Msa0227420:CDS |
| AATTTATGTTGTCGGAGTCA+TGG | 0.509180 | 2_1:-78335353 | None:intergenic |
| GATATTTGCTGCAATAGCAA+TGG | 0.517861 | 2_1:+78336555 | Msa0227420:CDS |
| ATATTTGCTGCAATAGCAAT+GGG | 0.519706 | 2_1:+78336556 | Msa0227420:CDS |
| TGGATGTATGCAATATCAAT+GGG | 0.524253 | 2_1:+78336718 | Msa0227420:CDS |
| GTCGTTCCCTCTTCTTCTTG+AGG | 0.530005 | 2_1:-78335720 | None:intergenic |
| AAATTAATGATCAGGTACTA+AGG | 0.530087 | 2_1:+78336492 | Msa0227420:intron |
| CAGAAGGGAGAACAGCGGAT+TGG | 0.535719 | 2_1:+78336698 | Msa0227420:CDS |
| AACCATGTTTGGTGATTGTG+TGG | 0.549871 | 2_1:+78335632 | Msa0227420:CDS |
| GCCATCGACGCAACAACAGA+AGG | 0.551024 | 2_1:+78336682 | Msa0227420:CDS |
| GCTAAAGTTGAGGAACTTGA+AGG | 0.551786 | 2_1:+78335687 | Msa0227420:CDS |
| GCTCTCATCCATCGCCAACT+CGG | 0.559618 | 2_1:-78335742 | None:intergenic |
| TAAACCATGGAGTGTCGAAA+CGG | 0.560955 | 2_1:-78336816 | None:intergenic |
| AAGCCAACATGAAGGCAAAA+GGG | 0.565308 | 2_1:-78335593 | None:intergenic |
| GGGAACGACCGAGTTGGCGA+TGG | 0.565946 | 2_1:+78335734 | Msa0227420:CDS |
| CACCACACAATCACCAAACA+TGG | 0.566132 | 2_1:-78335634 | None:intergenic |
| AGACCATTAATAACAACAGC+AGG | 0.566425 | 2_1:+78336607 | Msa0227420:CDS |
| CATGTTTGGTGATTGTGTGG+TGG | 0.584077 | 2_1:+78335635 | Msa0227420:CDS |
| AGAGCCGTTTCGACACTCCA+TGG | 0.586693 | 2_1:+78336812 | Msa0227420:CDS |
| TCCAGAACAAGCCAACATGA+AGG | 0.595290 | 2_1:-78335601 | None:intergenic |
| AAGTTGAGGAACTTGAAGGA+GGG | 0.602436 | 2_1:+78335691 | Msa0227420:CDS |
| TATGTTGTCGGAGTCATGGT+CGG | 0.603695 | 2_1:-78335349 | None:intergenic |
| TTAGGGACACAATTTGCTGG+TGG | 0.603967 | 2_1:+78335492 | Msa0227420:CDS |
| TGTAACAAGTAATAATCAGA+GGG | 0.605818 | 2_1:+78335662 | Msa0227420:CDS |
| AGAAGAGGGAACGACCGAGT+TGG | 0.611188 | 2_1:+78335728 | Msa0227420:CDS |
| AAAGTTGAGGAACTTGAAGG+AGG | 0.613893 | 2_1:+78335690 | Msa0227420:CDS |
| ATGTAACAAGTAATAATCAG+AGG | 0.621888 | 2_1:+78335661 | Msa0227420:CDS |
| AGAACACCTCAAGAAGAAGA+GGG | 0.622606 | 2_1:+78335714 | Msa0227420:CDS |
| ATCTCTAGCCCAATTGGCGT+AGG | 0.622666 | 2_1:+78336649 | Msa0227420:CDS |
| TTATTATTTCCGTTGGAACG+AGG | 0.624370 | 2_1:+78335458 | Msa0227420:CDS |
| CAGGTACTAAGGAAGAAGCA+TGG | 0.640699 | 2_1:+78336503 | Msa0227420:intron |
| CCATCGACGCAACAACAGAA+GGG | 0.642467 | 2_1:+78336683 | Msa0227420:CDS |
| TCAGAGGGAAGCTAAAGTTG+AGG | 0.644763 | 2_1:+78335677 | Msa0227420:CDS |
| TCGAAACGGCTCTTCCTCTG+CGG | 0.648000 | 2_1:-78336802 | None:intergenic |
| ATATCAATGGGTATTGCTTG+TGG | 0.657971 | 2_1:+78336730 | Msa0227420:CDS |
| GAAATAACCTGAAATTCCAA+CGG | 0.686017 | 2_1:-78335853 | None:intergenic |
| CTAAAGGCTTCAAACCGCAG+AGG | 0.686420 | 2_1:+78336788 | Msa0227420:CDS |
| ACAGCAAGAAACCTAAACCA+TGG | 0.706576 | 2_1:-78336829 | None:intergenic |
| AATTCAATCAAAGCTCATGG+AGG | 0.725080 | 2_1:+78335315 | Msa0227420:CDS |
| AACAACAGAAGGGAGAACAG+CGG | 0.747170 | 2_1:+78336693 | Msa0227420:CDS |
| GTACTAAGGAAGAAGCATGG+AGG | 0.765390 | 2_1:+78336506 | Msa0227420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTATTCGTATATAT+GGG | - | chr2_1:78336108-78336127 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | - | chr2_1:78336109-78336128 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | + | chr2_1:78336484-78336503 | Msa0227420:intron | 15.0% |
| !!! | TTTTAACTATTCGTATATAT+GGG | - | chr2_1:78336108-78336127 | None:intergenic | 15.0% |
| !!! | ATTTTAACTATTCGTATATA+TGG | - | chr2_1:78336109-78336128 | None:intergenic | 15.0% |
| !! | TAATATACAAATTAATGATC+AGG | + | chr2_1:78336484-78336503 | Msa0227420:intron | 15.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | + | chr2_1:78335904-78335923 | Msa0227420:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | + | chr2_1:78336207-78336226 | Msa0227420:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | + | chr2_1:78336208-78336227 | Msa0227420:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | + | chr2_1:78336235-78336254 | Msa0227420:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | - | chr2_1:78336406-78336425 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | - | chr2_1:78336407-78336426 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | + | chr2_1:78336772-78336791 | Msa0227420:CDS | 20.0% |
| !!! | TGATAGTCTTTTTCTTTTTT+CGG | + | chr2_1:78335904-78335923 | Msa0227420:intron | 20.0% |
| !!! | TATTTTAAATAGCATCAAAG+TGG | + | chr2_1:78336207-78336226 | Msa0227420:intron | 20.0% |
| !!! | ATTTTAAATAGCATCAAAGT+GGG | + | chr2_1:78336208-78336227 | Msa0227420:intron | 20.0% |
| !!! | TGTATATATGATGTGTTTTA+GGG | + | chr2_1:78336235-78336254 | Msa0227420:intron | 20.0% |
| !!! | TATGCATTTTCATATTGAAA+GGG | - | chr2_1:78336406-78336425 | None:intergenic | 20.0% |
| !!! | ATATGCATTTTCATATTGAA+AGG | - | chr2_1:78336407-78336426 | None:intergenic | 20.0% |
| !! | ATCAATCATTTAATCTCTAA+AGG | + | chr2_1:78336772-78336791 | Msa0227420:CDS | 20.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | - | chr2_1:78335398-78335417 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | + | chr2_1:78335423-78335442 | Msa0227420:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | + | chr2_1:78335661-78335680 | Msa0227420:CDS | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | + | chr2_1:78335662-78335681 | Msa0227420:CDS | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | - | chr2_1:78335900-78335919 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | + | chr2_1:78335905-78335924 | Msa0227420:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | - | chr2_1:78335957-78335976 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | + | chr2_1:78336234-78336253 | Msa0227420:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | + | chr2_1:78336492-78336511 | Msa0227420:intron | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | - | chr2_1:78336604-78336623 | None:intergenic | 25.0% |
| !!! | TCAAACACCATATTTTAACA+AGG | - | chr2_1:78335398-78335417 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTTTCACTTTCTT+AGG | + | chr2_1:78335423-78335442 | Msa0227420:CDS | 25.0% |
| ! | ATGTAACAAGTAATAATCAG+AGG | + | chr2_1:78335661-78335680 | Msa0227420:CDS | 25.0% |
| ! | TGTAACAAGTAATAATCAGA+GGG | + | chr2_1:78335662-78335681 | Msa0227420:CDS | 25.0% |
| ! | AAGAAAAAGACTATCAAGAA+AGG | - | chr2_1:78335900-78335919 | None:intergenic | 25.0% |
| !! | GATAGTCTTTTTCTTTTTTC+GGG | + | chr2_1:78335905-78335924 | Msa0227420:intron | 25.0% |
| ! | GAAAATTTGATCTTCAACAT+TGG | - | chr2_1:78335957-78335976 | None:intergenic | 25.0% |
| !! | CTGTATATATGATGTGTTTT+AGG | + | chr2_1:78336234-78336253 | Msa0227420:intron | 25.0% |
| ! | AAATTAATGATCAGGTACTA+AGG | + | chr2_1:78336492-78336511 | Msa0227420:intron | 25.0% |
| !!! | GTTGTTATTAATGGTCTTTT+TGG | - | chr2_1:78336604-78336623 | None:intergenic | 25.0% |
| !! | AATAAGGAACGTTGACTTTA+GGG | - | chr2_1:78335271-78335290 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | - | chr2_1:78335272-78335291 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | - | chr2_1:78335287-78335306 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | - | chr2_1:78335310-78335329 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | + | chr2_1:78335312-78335331 | Msa0227420:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | - | chr2_1:78335364-78335383 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | + | chr2_1:78335364-78335383 | Msa0227420:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | + | chr2_1:78335388-78335407 | Msa0227420:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | + | chr2_1:78335426-78335445 | Msa0227420:CDS | 30.0% |
| ! | AACGAGGTTTTTCTTCTATT+AGG | + | chr2_1:78335474-78335493 | Msa0227420:CDS | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | + | chr2_1:78335475-78335494 | Msa0227420:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | + | chr2_1:78335621-78335640 | Msa0227420:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | + | chr2_1:78335774-78335793 | Msa0227420:CDS | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | + | chr2_1:78335815-78335834 | Msa0227420:CDS | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | + | chr2_1:78335825-78335844 | Msa0227420:CDS | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | - | chr2_1:78335856-78335875 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | - | chr2_1:78335884-78335903 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | + | chr2_1:78335928-78335947 | Msa0227420:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | + | chr2_1:78336152-78336171 | Msa0227420:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | + | chr2_1:78336258-78336277 | Msa0227420:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | + | chr2_1:78336358-78336377 | Msa0227420:intron | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | - | chr2_1:78336402-78336421 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | + | chr2_1:78336556-78336575 | Msa0227420:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | - | chr2_1:78336613-78336632 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | + | chr2_1:78336717-78336736 | Msa0227420:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | + | chr2_1:78336718-78336737 | Msa0227420:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | + | chr2_1:78336869-78336888 | Msa0227420:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | + | chr2_1:78336870-78336889 | Msa0227420:CDS | 30.0% | |
| !! | AATAAGGAACGTTGACTTTA+GGG | - | chr2_1:78335271-78335290 | None:intergenic | 30.0% |
| !! | AAATAAGGAACGTTGACTTT+AGG | - | chr2_1:78335272-78335291 | None:intergenic | 30.0% |
| AGACTAAGAGACACAAAATA+AGG | - | chr2_1:78335287-78335306 | None:intergenic | 30.0% | |
| ! | AGCTTTGATTGAATTGAAGA+AGG | - | chr2_1:78335310-78335329 | None:intergenic | 30.0% |
| TTCAATTCAATCAAAGCTCA+TGG | + | chr2_1:78335312-78335331 | Msa0227420:CDS | 30.0% | |
| CGAACGTAAATTTATGTTGT+CGG | - | chr2_1:78335364-78335383 | None:intergenic | 30.0% | |
| ACAACATAAATTTACGTTCG+AGG | + | chr2_1:78335364-78335383 | Msa0227420:CDS | 30.0% | |
| GTTTGGTCCTTGTTAAAATA+TGG | + | chr2_1:78335388-78335407 | Msa0227420:CDS | 30.0% | |
| !! | TTTGTTTTCACTTTCTTAGG+TGG | + | chr2_1:78335426-78335445 | Msa0227420:CDS | 30.0% |
| ! | AACGAGGTTTTTCTTCTATT+AGG | + | chr2_1:78335474-78335493 | Msa0227420:CDS | 30.0% |
| ! | ACGAGGTTTTTCTTCTATTA+GGG | + | chr2_1:78335475-78335494 | Msa0227420:CDS | 30.0% |
| ! | GGATATCTTTTAACCATGTT+TGG | + | chr2_1:78335621-78335640 | Msa0227420:CDS | 30.0% |
| TTCATGAAGACTACTAATCT+TGG | + | chr2_1:78335774-78335793 | Msa0227420:CDS | 30.0% | |
| !!! | TCTTGCACTTTGTTTTCATT+CGG | + | chr2_1:78335815-78335834 | Msa0227420:CDS | 30.0% |
| ! | TGTTTTCATTCGGTTTTTGA+AGG | + | chr2_1:78335825-78335844 | Msa0227420:CDS | 30.0% |
| GAAATAACCTGAAATTCCAA+CGG | - | chr2_1:78335856-78335875 | None:intergenic | 30.0% | |
| AGAAAGGATGAAATAAACGA+TGG | - | chr2_1:78335884-78335903 | None:intergenic | 30.0% | |
| ! | AGTGTTAAAGTATCAAACCT+AGG | + | chr2_1:78335928-78335947 | Msa0227420:intron | 30.0% |
| TTATGCATTCTTCTCTTTCT+TGG | + | chr2_1:78336152-78336171 | Msa0227420:intron | 30.0% | |
| TGACTGTTATGTTACTGTAT+TGG | + | chr2_1:78336258-78336277 | Msa0227420:intron | 30.0% | |
| ! | AAGTTTGGCATGTGATTTTT+AGG | + | chr2_1:78336358-78336377 | Msa0227420:intron | 30.0% |
| ! | CATTTTCATATTGAAAGGGA+TGG | - | chr2_1:78336402-78336421 | None:intergenic | 30.0% |
| ! | ATATTTGCTGCAATAGCAAT+GGG | + | chr2_1:78336556-78336575 | Msa0227420:CDS | 30.0% |
| ! | TATCCTGCTGTTGTTATTAA+TGG | - | chr2_1:78336613-78336632 | None:intergenic | 30.0% |
| TTGGATGTATGCAATATCAA+TGG | + | chr2_1:78336717-78336736 | Msa0227420:CDS | 30.0% | |
| TGGATGTATGCAATATCAAT+GGG | + | chr2_1:78336718-78336737 | Msa0227420:CDS | 30.0% | |
| TAATTGCAGTTGTCATGATT+TGG | + | chr2_1:78336869-78336888 | Msa0227420:CDS | 30.0% | |
| AATTGCAGTTGTCATGATTT+GGG | + | chr2_1:78336870-78336889 | Msa0227420:CDS | 30.0% | |
| AATTCAATCAAAGCTCATGG+AGG | + | chr2_1:78335315-78335334 | Msa0227420:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | - | chr2_1:78335356-78335375 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | + | chr2_1:78335371-78335390 | Msa0227420:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | + | chr2_1:78335451-78335470 | Msa0227420:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | - | chr2_1:78335459-78335478 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | + | chr2_1:78335458-78335477 | Msa0227420:CDS | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | + | chr2_1:78335992-78336011 | Msa0227420:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | - | chr2_1:78336001-78336020 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | - | chr2_1:78336393-78336412 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | + | chr2_1:78336555-78336574 | Msa0227420:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | + | chr2_1:78336607-78336626 | Msa0227420:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | + | chr2_1:78336730-78336749 | Msa0227420:CDS | 35.0% |
| AATTCAATCAAAGCTCATGG+AGG | + | chr2_1:78335315-78335334 | Msa0227420:CDS | 35.0% | |
| AATTTATGTTGTCGGAGTCA+TGG | - | chr2_1:78335356-78335375 | None:intergenic | 35.0% | |
| AAATTTACGTTCGAGGAGTT+TGG | + | chr2_1:78335371-78335390 | Msa0227420:CDS | 35.0% | |
| TGTCTCCTTATTATTTCCGT+TGG | + | chr2_1:78335451-78335470 | Msa0227420:CDS | 35.0% | |
| TCGTTCCAACGGAAATAATA+AGG | - | chr2_1:78335459-78335478 | None:intergenic | 35.0% | |
| TTATTATTTCCGTTGGAACG+AGG | + | chr2_1:78335458-78335477 | Msa0227420:CDS | 35.0% | |
| TGAAGACCAACATCATTTCT+TGG | + | chr2_1:78335992-78336011 | Msa0227420:intron | 35.0% | |
| AGACTACCAAGAAATGATGT+TGG | - | chr2_1:78336001-78336020 | None:intergenic | 35.0% | |
| !! | ATTGAAAGGGATGGACTATA+TGG | - | chr2_1:78336393-78336412 | None:intergenic | 35.0% |
| ! | GATATTTGCTGCAATAGCAA+TGG | + | chr2_1:78336555-78336574 | Msa0227420:CDS | 35.0% |
| AGACCATTAATAACAACAGC+AGG | + | chr2_1:78336607-78336626 | Msa0227420:CDS | 35.0% | |
| ! | ATATCAATGGGTATTGCTTG+TGG | + | chr2_1:78336730-78336749 | Msa0227420:CDS | 35.0% |
| GAAGAAAAACCTCGTTCCAA+CGG | - | chr2_1:78335470-78335489 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | + | chr2_1:78335489-78335508 | Msa0227420:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | + | chr2_1:78335504-78335523 | Msa0227420:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | - | chr2_1:78335583-78335602 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | + | chr2_1:78335590-78335609 | Msa0227420:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | - | chr2_1:78335596-78335615 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | + | chr2_1:78335632-78335651 | Msa0227420:CDS | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | + | chr2_1:78335687-78335706 | Msa0227420:CDS | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | + | chr2_1:78335690-78335709 | Msa0227420:CDS | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | + | chr2_1:78335691-78335710 | Msa0227420:CDS | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | + | chr2_1:78335714-78335733 | Msa0227420:CDS | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | - | chr2_1:78335948-78335967 | None:intergenic | 40.0% |
| CAAAGTCACATCTCACAAGT+AGG | - | chr2_1:78336332-78336351 | None:intergenic | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | + | chr2_1:78336294-78336313 | Msa0227420:intron | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | + | chr2_1:78336515-78336534 | Msa0227420:CDS | 40.0% |
| ! | TTTGCTATCTCTAGCCCAAT+TGG | + | chr2_1:78336643-78336662 | Msa0227420:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | - | chr2_1:78336660-78336679 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | - | chr2_1:78336661-78336680 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | - | chr2_1:78336819-78336838 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | - | chr2_1:78336832-78336851 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | + | chr2_1:78336838-78336857 | Msa0227420:CDS | 40.0% |
| GAAGAAAAACCTCGTTCCAA+CGG | - | chr2_1:78335470-78335489 | None:intergenic | 40.0% | |
| CTATTAGGGACACAATTTGC+TGG | + | chr2_1:78335489-78335508 | Msa0227420:CDS | 40.0% | |
| ! | TTTGCTGGTGGAGTTTTTCT+TGG | + | chr2_1:78335504-78335523 | Msa0227420:CDS | 40.0% |
| ! | GGCAAAAGGGTAAGTTTTCT+TGG | - | chr2_1:78335583-78335602 | None:intergenic | 40.0% |
| ! | TTACCCTTTTGCCTTCATGT+TGG | + | chr2_1:78335590-78335609 | Msa0227420:CDS | 40.0% |
| AAGCCAACATGAAGGCAAAA+GGG | - | chr2_1:78335596-78335615 | None:intergenic | 40.0% | |
| ! | AACCATGTTTGGTGATTGTG+TGG | + | chr2_1:78335632-78335651 | Msa0227420:CDS | 40.0% |
| GCTAAAGTTGAGGAACTTGA+AGG | + | chr2_1:78335687-78335706 | Msa0227420:CDS | 40.0% | |
| AAAGTTGAGGAACTTGAAGG+AGG | + | chr2_1:78335690-78335709 | Msa0227420:CDS | 40.0% | |
| AAGTTGAGGAACTTGAAGGA+GGG | + | chr2_1:78335691-78335710 | Msa0227420:CDS | 40.0% | |
| AGAACACCTCAAGAAGAAGA+GGG | + | chr2_1:78335714-78335733 | Msa0227420:CDS | 40.0% | |
| ! | ATCTTCAACATTGGTGACCT+AGG | - | chr2_1:78335948-78335967 | None:intergenic | 40.0% |
| CAAAGTCACATCTCACAAGT+AGG | - | chr2_1:78336332-78336351 | None:intergenic | 40.0% | |
| GTGACTTTGCATCTCAAGTT+TGG | + | chr2_1:78336294-78336313 | Msa0227420:intron | 40.0% | |
| ! | AAGAAGCATGGAGGAATTTG+TGG | + | chr2_1:78336515-78336534 | Msa0227420:CDS | 40.0% |
| ! | TTTGCTATCTCTAGCCCAAT+TGG | + | chr2_1:78336643-78336662 | Msa0227420:CDS | 40.0% |
| TTCCAATTCCTACGCCAATT+GGG | - | chr2_1:78336660-78336679 | None:intergenic | 40.0% | |
| ATTCCAATTCCTACGCCAAT+TGG | - | chr2_1:78336661-78336680 | None:intergenic | 40.0% | |
| !! | TAAACCATGGAGTGTCGAAA+CGG | - | chr2_1:78336819-78336838 | None:intergenic | 40.0% |
| ACAGCAAGAAACCTAAACCA+TGG | - | chr2_1:78336832-78336851 | None:intergenic | 40.0% | |
| !! | AGGTTTCTTGCTGTGCTTTT+TGG | + | chr2_1:78336838-78336857 | Msa0227420:CDS | 40.0% |
| !! | GAACGTTGACTTTAGGGCTT+TGG | - | chr2_1:78335265-78335284 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | - | chr2_1:78335352-78335371 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | + | chr2_1:78335492-78335511 | Msa0227420:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | - | chr2_1:78335597-78335616 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | - | chr2_1:78335604-78335623 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | - | chr2_1:78335637-78335656 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | + | chr2_1:78335635-78335654 | Msa0227420:CDS | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | + | chr2_1:78335677-78335696 | Msa0227420:CDS | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | + | chr2_1:78335713-78335732 | Msa0227420:CDS | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | + | chr2_1:78336503-78336522 | Msa0227420:intron | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | + | chr2_1:78336506-78336525 | Msa0227420:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | + | chr2_1:78336693-78336712 | Msa0227420:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | + | chr2_1:78336818-78336837 | Msa0227420:CDS | 45.0% | |
| !! | GAACGTTGACTTTAGGGCTT+TGG | - | chr2_1:78335265-78335284 | None:intergenic | 45.0% |
| TATGTTGTCGGAGTCATGGT+CGG | - | chr2_1:78335352-78335371 | None:intergenic | 45.0% | |
| !! | TTAGGGACACAATTTGCTGG+TGG | + | chr2_1:78335492-78335511 | Msa0227420:CDS | 45.0% |
| CAAGCCAACATGAAGGCAAA+AGG | - | chr2_1:78335597-78335616 | None:intergenic | 45.0% | |
| TCCAGAACAAGCCAACATGA+AGG | - | chr2_1:78335604-78335623 | None:intergenic | 45.0% | |
| CACCACACAATCACCAAACA+TGG | - | chr2_1:78335637-78335656 | None:intergenic | 45.0% | |
| ! | CATGTTTGGTGATTGTGTGG+TGG | + | chr2_1:78335635-78335654 | Msa0227420:CDS | 45.0% |
| TCAGAGGGAAGCTAAAGTTG+AGG | + | chr2_1:78335677-78335696 | Msa0227420:CDS | 45.0% | |
| GAGAACACCTCAAGAAGAAG+AGG | + | chr2_1:78335713-78335732 | Msa0227420:CDS | 45.0% | |
| CAGGTACTAAGGAAGAAGCA+TGG | + | chr2_1:78336503-78336522 | Msa0227420:intron | 45.0% | |
| ! | GTACTAAGGAAGAAGCATGG+AGG | + | chr2_1:78336506-78336525 | Msa0227420:CDS | 45.0% |
| AACAACAGAAGGGAGAACAG+CGG | + | chr2_1:78336693-78336712 | Msa0227420:CDS | 45.0% | |
| GTTTCGACACTCCATGGTTT+AGG | + | chr2_1:78336818-78336837 | Msa0227420:CDS | 45.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | - | chr2_1:78335262-78335281 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | + | chr2_1:78335600-78335619 | Msa0227420:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | - | chr2_1:78335723-78335742 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | + | chr2_1:78335837-78335856 | Msa0227420:CDS | 50.0% |
| ATCTCTAGCCCAATTGGCGT+AGG | + | chr2_1:78336649-78336668 | Msa0227420:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | + | chr2_1:78336655-78336674 | Msa0227420:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | + | chr2_1:78336683-78336702 | Msa0227420:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | + | chr2_1:78336788-78336807 | Msa0227420:CDS | 50.0% | |
| !! | CGTTGACTTTAGGGCTTTGG+AGG | - | chr2_1:78335262-78335281 | None:intergenic | 50.0% |
| !! | GCCTTCATGTTGGCTTGTTC+TGG | + | chr2_1:78335600-78335619 | Msa0227420:CDS | 50.0% |
| GTCGTTCCCTCTTCTTCTTG+AGG | - | chr2_1:78335723-78335742 | None:intergenic | 50.0% | |
| !!! | GTTTTTGAAGGCATCGCCGT+TGG | + | chr2_1:78335837-78335856 | Msa0227420:CDS | 50.0% |
| ATCTCTAGCCCAATTGGCGT+AGG | + | chr2_1:78336649-78336668 | Msa0227420:CDS | 50.0% | |
| AGCCCAATTGGCGTAGGAAT+TGG | + | chr2_1:78336655-78336674 | Msa0227420:CDS | 50.0% | |
| CCATCGACGCAACAACAGAA+GGG | + | chr2_1:78336683-78336702 | Msa0227420:CDS | 50.0% | |
| CTAAAGGCTTCAAACCGCAG+AGG | + | chr2_1:78336788-78336807 | Msa0227420:CDS | 50.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | + | chr2_1:78335728-78335747 | Msa0227420:CDS | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | - | chr2_1:78335745-78335764 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | + | chr2_1:78335846-78335865 | Msa0227420:CDS | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | + | chr2_1:78336682-78336701 | Msa0227420:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | - | chr2_1:78336686-78336705 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | + | chr2_1:78336698-78336717 | Msa0227420:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | - | chr2_1:78336805-78336824 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | + | chr2_1:78336812-78336831 | Msa0227420:CDS | 55.0% | |
| AGAAGAGGGAACGACCGAGT+TGG | + | chr2_1:78335728-78335747 | Msa0227420:CDS | 55.0% | |
| GCTCTCATCCATCGCCAACT+CGG | - | chr2_1:78335745-78335764 | None:intergenic | 55.0% | |
| GGCATCGCCGTTGGAATTTC+AGG | + | chr2_1:78335846-78335865 | Msa0227420:CDS | 55.0% | |
| GCCATCGACGCAACAACAGA+AGG | + | chr2_1:78336682-78336701 | Msa0227420:CDS | 55.0% | |
| CCCTTCTGTTGTTGCGTCGA+TGG | - | chr2_1:78336686-78336705 | None:intergenic | 55.0% | |
| CAGAAGGGAGAACAGCGGAT+TGG | + | chr2_1:78336698-78336717 | Msa0227420:CDS | 55.0% | |
| TCGAAACGGCTCTTCCTCTG+CGG | - | chr2_1:78336805-78336824 | None:intergenic | 55.0% | |
| AGAGCCGTTTCGACACTCCA+TGG | + | chr2_1:78336812-78336831 | Msa0227420:CDS | 55.0% | |
| ! | GGGAACGACCGAGTTGGCGA+TGG | + | chr2_1:78335734-78335753 | Msa0227420:CDS | 65.0% |
| ! | GGGAACGACCGAGTTGGCGA+TGG | + | chr2_1:78335734-78335753 | Msa0227420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 78335252 | 78336897 | 78335252 | ID=Msa0227420;Name=Msa0227420 |
| chr2_1 | mRNA | 78335252 | 78336897 | 78335252 | ID=Msa0227420-mRNA-1;Parent=Msa0227420;Name=Msa0227420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|335 |
| chr2_1 | exon | 78335252 | 78335867 | 78335252 | ID=Msa0227420-mRNA-1:exon:23869;Parent=Msa0227420-mRNA-1 |
| chr2_1 | exon | 78336506 | 78336897 | 78336506 | ID=Msa0227420-mRNA-1:exon:23870;Parent=Msa0227420-mRNA-1 |
| chr2_1 | CDS | 78335252 | 78335867 | 78335252 | ID=Msa0227420-mRNA-1:cds;Parent=Msa0227420-mRNA-1 |
| chr2_1 | CDS | 78336506 | 78336897 | 78336506 | ID=Msa0227420-mRNA-1:cds;Parent=Msa0227420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
