AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372990 MtrunA17_Chr3g0121931 96.111 720 26 2 1 718 1 720 0.0 1438
Msa0372990 MtrunA17_Chr3g0121951 81.931 725 114 7 1 718 1 715 0.0 1206
Msa0372990 MtrunA17_Chr8g0377991 73.634 732 171 7 1 718 1 724 0.0 1091
Msa0372990 MtrunA17_Chr1g0205711 26.624 631 381 16 107 717 116 684 2.91e-54 198
Msa0372990 MtrunA17_Chr1g0194371 28.251 669 389 21 81 718 46 654 1.54e-52 193
Msa0372990 MtrunA17_Chr7g0270221 26.260 655 364 19 81 710 46 606 7.12e-48 179
Msa0372990 MtrunA17_Chr1g0162621 25.668 674 398 24 81 718 48 654 2.62e-46 175
Msa0372990 MtrunA17_Chr5g0396691 27.003 674 390 25 81 718 48 655 3.50e-46 174
Msa0372990 MtrunA17_Chr4g0034181 25.778 675 395 24 81 718 47 652 4.02e-45 171
Msa0372990 MtrunA17_Chr5g0396711 26.637 672 395 25 81 718 48 655 3.22e-44 169
Msa0372990 MtrunA17_Chr8g0388081 25.701 642 380 23 108 718 19 594 1.02e-41 160
Msa0372990 MtrunA17_Chr1g0160041 25.625 640 394 18 107 717 108 694 1.07e-41 162
Msa0372990 MtrunA17_Chr3g0120731 25.078 642 396 21 108 717 138 726 5.83e-40 157
Msa0372990 MtrunA17_Chr3g0124631 23.896 657 388 19 107 717 106 696 1.64e-34 140
Msa0372990 MtrunA17_Chr2g0334131 28.731 268 141 9 453 708 50 279 5.45e-20 90.9
Msa0372990 MtrunA17_Chr3g0116251 28.926 363 170 15 248 604 190 470 2.82e-19 92.0
Msa0372990 MtrunA17_Chr4g0028411 29.167 240 134 6 476 713 337 542 1.16e-18 90.1
Msa0372990 MtrunA17_Chr3g0116271 39.490 157 78 5 453 604 328 472 3.53e-18 88.6
Msa0372990 MtrunA17_Chr2g0327341 27.344 256 154 7 416 669 281 506 6.77e-18 87.8
Msa0372990 MtrunA17_Chr4g0039791 24.855 519 284 17 118 630 83 501 1.42e-17 86.7
Msa0372990 MtrunA17_Chr5g0395431 30.653 199 110 4 473 666 376 551 4.09e-17 85.5
Msa0372990 MtrunA17_Chr5g0409791 36.301 146 77 5 462 603 348 481 9.50e-17 84.3
Msa0372990 MtrunA17_Chr3g0102411 31.683 202 116 7 470 662 329 517 4.72e-16 82.0
Msa0372990 MtrunA17_Chr1g0157401 33.702 181 105 4 452 628 329 498 5.25e-16 81.6
Msa0372990 MtrunA17_Chr6g0471921 22.323 551 306 18 107 641 32 476 6.23e-16 81.3
Msa0372990 MtrunA17_Chr5g0409771 32.000 175 99 5 462 630 335 495 4.28e-15 79.0
Msa0372990 MtrunA17_Chr4g0072561 27.273 198 117 4 473 666 338 512 1.56e-14 77.0
Msa0372990 MtrunA17_Chr1g0180541 29.126 206 117 6 455 642 316 510 6.61e-14 75.1
Msa0372990 MtrunA17_Chr1g0186071 38.095 147 75 6 475 618 351 484 6.75e-14 75.1
Msa0372990 MtrunA17_Chr1g0180551 30.625 160 96 3 475 630 413 561 2.82e-13 73.2
Msa0372990 MtrunA17_Chr1g0197391 32.515 163 92 4 471 628 355 504 5.30e-13 72.4
Msa0372990 MtrunA17_Chr4g0000461 27.007 274 152 9 453 715 308 544 1.17e-12 71.2
Msa0372990 MtrunA17_Chr4g0004101 26.633 199 130 4 452 645 97 284 5.87e-11 64.7
Msa0372990 MtrunA17_Chr8g0353341 29.348 184 105 5 452 626 332 499 6.06e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372990 AT3G23790.1 68.328 682 209 4 41 718 44 722 0.0 995
Msa0372990 AT4G14070.1 65.070 710 229 5 12 717 32 726 0.0 971
Msa0372990 AT5G27600.1 28.076 634 372 14 105 717 117 687 1.43e-58 211
Msa0372990 AT1G49430.1 27.656 640 380 19 103 717 76 657 4.45e-55 201
Msa0372990 AT2G47240.1 26.727 666 402 20 81 718 46 653 1.58e-53 196
Msa0372990 AT2G47240.2 26.727 666 402 20 81 718 46 653 1.58e-53 196
Msa0372990 AT2G47240.3 26.727 666 402 20 81 718 46 653 1.58e-53 196
Msa0372990 AT2G47240.4 26.471 646 394 19 96 718 7 594 3.74e-52 191
Msa0372990 AT3G05970.1 26.794 627 387 15 107 718 119 688 1.02e-51 191
Msa0372990 AT4G23850.1 25.706 673 400 22 81 718 49 656 1.85e-48 182
Msa0372990 AT4G11030.1 25.702 677 411 23 73 718 41 656 2.56e-48 181
Msa0372990 AT1G64400.1 24.668 677 416 20 74 718 42 656 2.20e-46 176
Msa0372990 AT2G04350.2 26.087 644 387 24 108 717 131 719 2.92e-42 164
Msa0372990 AT2G04350.1 26.087 644 387 24 108 717 131 719 2.92e-42 164
Msa0372990 AT1G77590.1 26.242 644 382 21 107 717 107 690 6.39e-42 163
Msa0372990 AT1G49430.2 27.848 474 277 13 103 558 76 502 2.40e-40 155
Msa0372990 AT1G77590.2 27.572 486 282 18 261 717 100 544 3.99e-33 135
Msa0372990 AT3G21230.3 30.667 225 121 6 452 667 335 533 1.37e-19 93.6
Msa0372990 AT4G05160.1 28.571 252 146 7 425 669 287 511 1.99e-19 92.8
Msa0372990 AT4G05160.1 25.084 299 194 12 82 372 33 309 1.49e-14 77.4
Msa0372990 AT3G21230.1 30.804 224 120 6 452 666 335 532 3.07e-19 92.4
Msa0372990 AT3G21230.2 36.646 161 79 5 452 603 335 481 8.73e-19 90.5
Msa0372990 AT3G21240.1 26.210 248 144 5 473 715 343 556 1.87e-18 90.1
Msa0372990 AT5G63380.1 28.571 336 146 14 243 563 186 442 3.98e-18 89.0
Msa0372990 AT3G21240.2 33.553 152 85 3 473 619 343 483 2.83e-17 85.9
Msa0372990 AT3G21240.3 33.553 152 85 3 473 619 343 483 2.83e-17 85.9
Msa0372990 AT1G65060.1 29.699 266 150 8 412 666 289 528 1.48e-16 84.0
Msa0372990 AT1G20480.1 35.088 171 96 5 452 618 334 493 1.88e-16 83.6
Msa0372990 AT4G19010.1 30.102 196 117 6 462 649 342 525 4.17e-16 82.4
Msa0372990 AT1G21530.2 25.820 244 143 8 401 626 256 479 1.05e-14 78.2
Msa0372990 AT1G51680.3 27.723 202 118 4 473 669 350 528 1.18e-14 77.8
Msa0372990 AT1G20510.1 30.978 184 102 5 452 626 313 480 2.48e-14 77.0
Msa0372990 AT1G20510.1 23.448 290 177 9 86 362 39 296 4.10e-11 66.6
Msa0372990 AT1G20510.2 31.818 176 95 5 452 618 313 472 3.74e-14 75.9
Msa0372990 AT1G20510.2 23.448 290 177 9 86 362 39 296 3.96e-11 66.6
Msa0372990 AT1G21530.1 25.410 244 142 8 401 626 256 477 4.62e-14 75.9
Msa0372990 AT1G51680.1 27.638 199 116 4 473 666 350 525 7.70e-14 75.5
Msa0372990 AT1G51680.2 42.222 90 47 1 473 557 350 439 9.31e-14 74.7
Msa0372990 AT1G21540.1 25.410 244 144 8 401 626 259 482 1.15e-13 74.7
Msa0372990 AT3G48990.1 25.984 254 147 11 459 709 294 509 1.27e-13 74.7
Msa0372990 AT1G66120.1 32.258 186 89 8 452 617 306 474 4.40e-13 73.2
Msa0372990 AT1G20510.3 32.653 147 75 4 452 589 313 444 1.62e-12 70.9
Msa0372990 AT1G20510.3 23.448 290 177 9 86 362 39 296 4.30e-11 66.2
Msa0372990 AT1G65060.2 40.625 96 52 1 473 563 353 448 1.87e-12 70.9
Msa0372990 AT1G65890.1 29.101 189 94 7 452 619 306 475 4.91e-12 69.7
Msa0372990 AT5G16340.1 27.149 221 115 7 452 642 303 507 9.37e-12 68.6
Msa0372990 AT1G20500.1 26.222 225 129 7 454 669 321 517 1.08e-11 68.6
Msa0372990 AT5G16370.1 28.095 210 113 8 429 620 284 473 1.79e-11 67.8
Msa0372990 AT1G68270.1 30.097 206 112 8 452 638 276 468 3.38e-11 67.0
Msa0372990 AT1G75960.1 28.061 196 101 6 452 626 303 479 3.95e-11 66.6
Msa0372990 AT1G65880.1 26.203 187 102 6 452 619 306 475 9.26e-11 65.5

Find 199 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGGAAGTCATAAATTT+TGG 0.092885 3_1:-71907385 Msa0372990:CDS
GCAATCTGATTATACATTTC+AGG 0.192501 3_1:+71907511 None:intergenic
TCATATGCTGGCAAATAAAT+TGG 0.192941 3_1:-71906127 Msa0372990:CDS
GGAAAGCAGTTCCTGATATT+TGG 0.194998 3_1:-71908757 Msa0372990:CDS
ATTGAGGTCTTCAAATAAAA+TGG 0.203541 3_1:+71907484 None:intergenic
ACGTTATAAGCCACATTTAA+TGG 0.209234 3_1:-71906648 Msa0372990:CDS
AGTAAAATCCGTTCAACTAT+TGG 0.228208 3_1:-71906099 Msa0372990:CDS
GCTGAGGGGTTGAGAGTTAT+TGG 0.238978 3_1:-71907964 Msa0372990:CDS
TAACAAAGAAGAAGTCTTAA+AGG 0.239879 3_1:-71903850 Msa0372990:CDS
CAGATTTATTATTCTGCTTT+GGG 0.256893 3_1:-71907461 Msa0372990:CDS
CATGTTTGAAACAATAAAAT+TGG 0.257278 3_1:-71907199 Msa0372990:CDS
TTGCCAGAACTTTCTAATAA+AGG 0.265222 3_1:+71908803 None:intergenic
CTGACTAACATCTGAACTAT+TGG 0.266034 3_1:+71903800 None:intergenic
GGAAGGTGATTTCTGATTCT+TGG 0.275282 3_1:+71906212 None:intergenic
CTATAATGACAGATTGATAA+TGG 0.276137 3_1:-71903358 Msa0372990:intron
GAATTCCCGCCATTGGAATT+TGG 0.276280 3_1:+71909318 None:intergenic
TGCCAGAACTTTCTAATAAA+GGG 0.276917 3_1:+71908804 None:intergenic
TTTAAGACTTCTTCTTTGTT+AGG 0.291375 3_1:+71903852 None:intergenic
TTGAATTTGCAGAATGGATA+TGG 0.306555 3_1:-71905667 Msa0372990:CDS
TCAGATTTATTATTCTGCTT+TGG 0.310911 3_1:-71907462 Msa0372990:CDS
AAAGTTGTAGATTCTGAAAC+TGG 0.332814 3_1:-71904965 Msa0372990:CDS
ATTGCTGGCCACCATTCAAT+TGG 0.343850 3_1:-71904424 Msa0372990:CDS
TTGAATTCTGTATGCTTAAG+TGG 0.346471 3_1:+71904986 None:intergenic
GGCAGAAGAAGAAGAGATAA+TGG 0.347487 3_1:+71909339 None:intergenic
TAAAATACTATACAGGCTAT+TGG 0.351278 3_1:-71905691 Msa0372990:intron
TCCCCTTTATTAGAAAGTTC+TGG 0.351729 3_1:-71908806 Msa0372990:CDS
ACTTGTATAGATTCTCTATC+TGG 0.356723 3_1:+71903278 None:intergenic
AAGCCAGCGACACGAGTTAT+CGG 0.363991 3_1:+71907909 None:intergenic
ATTGGGCGGAGTCGTAATTC+TGG 0.364386 3_1:-71904406 Msa0372990:CDS
CCATTATCGTGCAGGACATC+AGG 0.365896 3_1:-71903507 Msa0372990:intron
TTCTAAGTATGTTGCCTCCT+TGG 0.366326 3_1:-71906872 Msa0372990:CDS
GCAGAAGTTCTCCAAATATC+AGG 0.367225 3_1:+71908746 None:intergenic
TGTAACATACCATTGACATT+AGG 0.368601 3_1:+71903248 None:intergenic
CTACAAATCGGGTCATTGAT+AGG 0.369287 3_1:-71904480 Msa0372990:CDS
CAGGGTTTCCATTTCAGATT+GGG 0.377327 3_1:-71903488 Msa0372990:CDS
TGACAACAATTTGTTGTATG+AGG 0.378602 3_1:+71904023 None:intergenic
TCCCTTCGAACTTTCATTGT+GGG 0.379570 3_1:+71903325 None:intergenic
TGGGTTAGCATAACACCTTT+AGG 0.379716 3_1:+71907132 None:intergenic
GTAAAATCCGTTCAACTATT+GGG 0.386193 3_1:-71906098 Msa0372990:CDS
TTGGAGCAATCAATGTGGTT+AGG 0.390648 3_1:-71907609 Msa0372990:CDS
TTGGCTATGGGCAAGAATTA+TGG 0.392307 3_1:-71906169 Msa0372990:CDS
GACACCATTGTGCTTTCATC+AGG 0.404554 3_1:-71904352 Msa0372990:intron
TCTATTGTGCCACTGGCATT+AGG 0.407334 3_1:+71903171 None:intergenic
TTGCCGATAACTCGTGTCGC+TGG 0.410489 3_1:-71907912 Msa0372990:CDS
TGGAGCAATCAATGTGGTTA+GGG 0.410509 3_1:-71907608 Msa0372990:CDS
AGCTCAAACACAGGATCAAA+TGG 0.411118 3_1:-71903216 Msa0372990:three_prime_UTR
TTGTAGTTAGCGGAGGTGAT+AGG 0.412051 3_1:+71909296 None:intergenic
AGTCTAGGCATGATGGCAAT+TGG 0.413657 3_1:-71907628 Msa0372990:intron
GGTGACATAGGTTGGATTGC+TGG 0.413768 3_1:-71904439 Msa0372990:CDS
ATACAACAAATTGTTGTCAT+TGG 0.414526 3_1:-71904019 Msa0372990:CDS
AGAATCCTTCAGCTACAAAT+CGG 0.416763 3_1:-71904492 Msa0372990:CDS
CACTACTGTAAGAAACTTGA+AGG 0.422837 3_1:-71906790 Msa0372990:intron
GTTATTGCTGCTCGGCGACT+TGG 0.423372 3_1:-71905625 Msa0372990:CDS
TAGTACCCCTTCATCAATTG+TGG 0.424278 3_1:+71904896 None:intergenic
ATTTGGACATATAGGATAAA+CGG 0.425855 3_1:-71903896 Msa0372990:intron
TTATTTGCCAGCATATGAAC+TGG 0.429494 3_1:+71906132 None:intergenic
AGAACTTCTGCAGAGAAGTA+TGG 0.431246 3_1:-71908734 Msa0372990:CDS
TTGTCGCTCTCACATTCATA+AGG 0.431494 3_1:-71906447 Msa0372990:CDS
TACGTACCTTGGATTGAGTA+TGG 0.432463 3_1:+71909174 None:intergenic
AGAAGGTGAAAATGTTGAAC+CGG 0.438102 3_1:-71904077 Msa0372990:intron
AAAACAATACAACAAGTTAG+AGG 0.438583 3_1:+71903062 None:intergenic
ATAGAGTTATGGCTCAATAC+AGG 0.440234 3_1:-71903303 Msa0372990:CDS
TAATCTAACTATTGTGGTAA+TGG 0.441469 3_1:+71903123 None:intergenic
AGGATTGGCCCAATCTGAAA+TGG 0.442047 3_1:+71903480 None:intergenic
TTCAACTATGACATACAAAC+AGG 0.442864 3_1:-71908672 Msa0372990:intron
AGGGATGGCTGGCTGAATAC+TGG 0.447110 3_1:-71904460 Msa0372990:CDS
ATCTCTATGCAATGTTGGAT+TGG 0.451464 3_1:-71906188 Msa0372990:CDS
TTCTGCCAAATTCCAATGGC+GGG 0.452045 3_1:-71909323 Msa0372990:exon
TATAATGACAGATTGATAAT+GGG 0.458531 3_1:-71903357 Msa0372990:intron
CAATAGTTCAGATGTTAGTC+AGG 0.458543 3_1:-71903799 Msa0372990:CDS
ATGCAATGTTGGATTGGCTA+TGG 0.459731 3_1:-71906182 Msa0372990:CDS
GGTGGTGTGATTGTTGTTGA+AGG 0.461244 3_1:-71904385 Msa0372990:CDS
TTATAGGTAATTGGATCTGT+GGG 0.463586 3_1:-71905013 Msa0372990:intron
GTTCTTCCACCTGGTTCAAA+GGG 0.463824 3_1:-71904938 Msa0372990:CDS
TCAGGGTTTCCATTTCAGAT+TGG 0.464402 3_1:-71903489 Msa0372990:CDS
ACAAATTGTTGTCATTGGTC+AGG 0.465907 3_1:-71904014 Msa0372990:intron
CCTTGTTTGCTTCATTGACA+AGG 0.466926 3_1:+71907425 None:intergenic
TTGTATGAGGTTACTCCTCA+TGG 0.473965 3_1:+71904036 None:intergenic
CAGGTGGCATACTAGTATCA+TGG 0.476001 3_1:+71907332 None:intergenic
GTATGGTGATAAAGTAGCTT+TGG 0.477399 3_1:-71908717 Msa0372990:CDS
TCTCGTAAATGATCCCTTCA+CGG 0.477946 3_1:-71903457 Msa0372990:intron
TCAATGTGGTTAGGGGTTCA+AGG 0.478558 3_1:-71907600 Msa0372990:CDS
CTTCTTCTGCCAAATTCCAA+TGG 0.481407 3_1:-71909327 Msa0372990:exon
TTGCTGGCCACCATTCAATT+GGG 0.483696 3_1:-71904423 Msa0372990:CDS
TTCAAAATTCCCTTTGAACC+AGG 0.484352 3_1:+71904929 None:intergenic
TGTTTGTATGTCATAGTTGA+AGG 0.485938 3_1:+71908674 None:intergenic
AGTCGCCGAGCAGCAATAAC+CGG 0.486356 3_1:+71905628 None:intergenic
GCAGCTTCTTCAAGCTCTCC+CGG 0.488586 3_1:+71904058 None:intergenic
GTGTACACAAGTGGTACTAC+TGG 0.489782 3_1:-71907159 Msa0372990:CDS
ATCCAACATTGCATAGAGAT+AGG 0.490564 3_1:+71906191 None:intergenic
GGATCATTTACGAGAAGGAT+TGG 0.491261 3_1:+71903465 None:intergenic
ACTTCCATGAATGTATAGAT+TGG 0.492371 3_1:+71907397 None:intergenic
AGCGGTTGGAGAAACGTTGA+TGG 0.494390 3_1:+71909214 None:intergenic
TACGACTCCGCCCAATTGAA+TGG 0.495276 3_1:+71904413 None:intergenic
CGCTGGCTTGTAGCAGATCA+AGG 0.496198 3_1:-71907895 Msa0372990:intron
GTGATAGGAATTCCCGCCAT+TGG 0.496343 3_1:+71909311 None:intergenic
CAAAGAAAACGGAGATAAGA+AGG 0.496585 3_1:-71908832 Msa0372990:CDS
GAAGAGAGGAAGTGAATGGA+TGG 0.497533 3_1:+71909262 None:intergenic
TTTATAGGTAATTGGATCTG+TGG 0.497753 3_1:-71905014 Msa0372990:intron
TTCCTATCTCTATGCAATGT+TGG 0.497937 3_1:-71906193 Msa0372990:CDS
GGTGCCAATCTATACATTCA+TGG 0.499931 3_1:-71907401 Msa0372990:CDS
CGAAGAAGAGAGGAAGTGAA+TGG 0.502851 3_1:+71909258 None:intergenic
ATTGGTTTGAATTTGCAGAA+TGG 0.503914 3_1:-71905673 Msa0372990:CDS
AGTTCGAAGGGATAGAGTTA+TGG 0.505449 3_1:-71903314 Msa0372990:CDS
AAGGGTCAGCTTAGGATACA+TGG 0.508079 3_1:-71906428 Msa0372990:CDS
TAGTTCATTATATATTAGAC+TGG 0.513277 3_1:+71903767 None:intergenic
AGTTCTTCCACCTGGTTCAA+AGG 0.516190 3_1:-71904939 Msa0372990:CDS
CAGAATAATAAATCTGATTG+AGG 0.517753 3_1:+71907468 None:intergenic
CAGGGGCCCACAATTGATGA+AGG 0.520046 3_1:-71904903 Msa0372990:CDS
GAATCCTTCAGCTACAAATC+GGG 0.521388 3_1:-71904491 Msa0372990:CDS
GACGTTGTACCTACTGAAGC+TGG 0.521458 3_1:-71906903 Msa0372990:CDS
ATTATATCCAGTTCATATGC+TGG 0.525970 3_1:-71906139 Msa0372990:CDS
ATCCCTTCGAACTTTCATTG+TGG 0.526009 3_1:+71903324 None:intergenic
ACATTCATAAGGGTCAGCTT+AGG 0.528734 3_1:-71906436 Msa0372990:CDS
GTAAACCAACCTAATGTCAA+TGG 0.530199 3_1:-71903257 Msa0372990:exon
AGTACCCCTTCATCAATTGT+GGG 0.533326 3_1:+71904897 None:intergenic
GTACGAGTCTATTGTGCCAC+TGG 0.537270 3_1:+71903164 None:intergenic
CAGGCTGCAGTAAGTGGTGG+TGG 0.537578 3_1:-71905819 Msa0372990:CDS
AAGAAGAAGAGATAATGGAA+TGG 0.539434 3_1:+71909344 None:intergenic
CCTGATGCAAAAGATTCTGA+TGG 0.540187 3_1:+71907112 None:intergenic
CCTTGTCAATGAAGCAAACA+AGG 0.542961 3_1:-71907425 Msa0372990:CDS
TACAAATCGGGTCATTGATA+GGG 0.544363 3_1:-71904479 Msa0372990:CDS
GTTGATGGTGGTGGTGAAGT+TGG 0.545443 3_1:+71909229 None:intergenic
ATGACCCGATTTGTAGCTGA+AGG 0.547200 3_1:+71904487 None:intergenic
ATGCTTAATCTAACCGTGAA+GGG 0.548255 3_1:+71903444 None:intergenic
ACTCTGCAGGCTGCAGTAAG+TGG 0.553234 3_1:-71905825 Msa0372990:intron
GAAGAGATAATGGAATGGAA+TGG 0.554593 3_1:+71909349 None:intergenic
ATATAGGATAAACGGCGTCT+AGG 0.555187 3_1:-71903888 Msa0372990:intron
CATTATCGTGCAGGACATCA+GGG 0.555530 3_1:-71903506 Msa0372990:intron
TTATTAGAAAGTTCTGGCAA+TGG 0.556242 3_1:-71908800 Msa0372990:CDS
TGAATACTGGTGACATAGGT+TGG 0.556669 3_1:-71904447 Msa0372990:CDS
TTTCTAGATCAAACACCTAT+CGG 0.557238 3_1:-71906925 Msa0372990:intron
TGGTTTAACAGAAACTTCAC+CGG 0.558821 3_1:-71905647 Msa0372990:CDS
TGTCGCTCTCACATTCATAA+GGG 0.558876 3_1:-71906446 Msa0372990:CDS
GGTACTACTGGAAATCCTAA+AGG 0.559374 3_1:-71907147 Msa0372990:CDS
TGGAGAAACGTTGATGGTGG+TGG 0.560310 3_1:+71909220 None:intergenic
ATATATGCAGACAAAGAAAA+CGG 0.560706 3_1:-71908843 Msa0372990:intron
GCCAGAACTTTCTAATAAAG+GGG 0.561061 3_1:+71908805 None:intergenic
AACATTGCATAGAGATAGGA+AGG 0.562084 3_1:+71906195 None:intergenic
TATTACTAATCTAACTATTG+TGG 0.562098 3_1:+71903117 None:intergenic
TGTGTTTAGTCTAGGCATGA+TGG 0.562670 3_1:-71907635 Msa0372990:intron
GGGTCATTGATAGGGATGGC+TGG 0.568019 3_1:-71904471 Msa0372990:CDS
GCAAAAGACGCGAAAAGAAG+CGG 0.572267 3_1:+71909196 None:intergenic
TGCAATGTTGGATTGGCTAT+GGG 0.572738 3_1:-71906181 Msa0372990:CDS
ACATACCATTGACATTAGGT+TGG 0.573803 3_1:+71903252 None:intergenic
AGGTGGCATACTAGTATCAT+GGG 0.576477 3_1:+71907333 None:intergenic
AATCTATCTCCAGCTTCAGT+AGG 0.579782 3_1:+71906894 None:intergenic
ACTGGTGAAGTTCTTCCACC+TGG 0.584400 3_1:-71904947 Msa0372990:CDS
GATGCTTAATCTAACCGTGA+AGG 0.585252 3_1:+71903443 None:intergenic
TTAGAAAGTTCTGGCAATGG+TGG 0.587337 3_1:-71908797 Msa0372990:CDS
AAGACGCGAAAAGAAGCGGT+TGG 0.588054 3_1:+71909200 None:intergenic
CTGATGCAAAAGATTCTGAT+GGG 0.591884 3_1:+71907113 None:intergenic
GCTACTCTTGTGTACACAAG+TGG 0.593098 3_1:-71907168 Msa0372990:CDS
CTTCTGCCAAATTCCAATGG+CGG 0.594914 3_1:-71909324 Msa0372990:exon
AAAATTCCCTTTGAACCAGG+TGG 0.596173 3_1:+71904932 None:intergenic
TGAAGGGATCATTTACGAGA+AGG 0.596427 3_1:+71903460 None:intergenic
GGAGTGTAAGCGAATTTATG+AGG 0.599610 3_1:-71906407 Msa0372990:intron
TAGAGTTATGGCTCAATACA+GGG 0.601359 3_1:-71903302 Msa0372990:CDS
CACCCACAATGAAAGTTCGA+AGG 0.602481 3_1:-71903327 Msa0372990:CDS
TTGATATCCCAATAGTTGAA+CGG 0.602896 3_1:+71906091 None:intergenic
AGAAGCATAGTTGTAGTTAG+CGG 0.603228 3_1:+71909286 None:intergenic
AATAGTTATAGCTCAAACAC+AGG 0.603943 3_1:-71903225 Msa0372990:three_prime_UTR
ATTGATGAAGGGGTACTACA+AGG 0.604460 3_1:-71904891 Msa0372990:intron
AGGGGCCCACAATTGATGAA+GGG 0.605207 3_1:-71904902 Msa0372990:CDS
TGGCTGAATACTGGTGACAT+AGG 0.606118 3_1:-71904451 Msa0372990:CDS
GTGGTGTGGCTTTAGATGAG+TGG 0.607797 3_1:-71908778 Msa0372990:CDS
TGAAAGTGTTGCACTAGCCG+TGG 0.608469 3_1:-71907539 Msa0372990:CDS
ATACATTTCAGGATTGTCCA+CGG 0.608619 3_1:+71907522 None:intergenic
TTGGTGCGAGCGAAGAAGAG+AGG 0.609535 3_1:+71909248 None:intergenic
AGCATAGTTGTAGTTAGCGG+AGG 0.612067 3_1:+71909289 None:intergenic
GGAACAGAAACCATTAAATG+TGG 0.615318 3_1:+71906638 None:intergenic
AATCGGGTCATTGATAGGGA+TGG 0.615967 3_1:-71904475 Msa0372990:CDS
GGGGCCCACAATTGATGAAG+GGG 0.617435 3_1:-71904901 Msa0372990:CDS
GCTCTTTCATATGCATGCCA+AGG 0.618770 3_1:+71906855 None:intergenic
CTGGCCACCATTCAATTGGG+CGG 0.620753 3_1:-71904420 Msa0372990:CDS
CAGTAGGTACAACGTCCGAT+AGG 0.622532 3_1:+71906910 None:intergenic
CTGCAGGCTGCAGTAAGTGG+TGG 0.623610 3_1:-71905822 Msa0372990:intron
AGATTTATTATTCTGCTTTG+GGG 0.624021 3_1:-71907460 Msa0372990:CDS
GGGCGGAGTCGTAATTCTGG+TGG 0.625225 3_1:-71904403 Msa0372990:CDS
CTTCACCGGTTATTGCTGCT+CGG 0.626548 3_1:-71905633 Msa0372990:CDS
ACCCACAATGAAAGTTCGAA+GGG 0.626647 3_1:-71903326 Msa0372990:CDS
GGAGCAATCAATGTGGTTAG+GGG 0.632299 3_1:-71907607 Msa0372990:CDS
CTTTCATATGCATGCCAAGG+AGG 0.633043 3_1:+71906858 None:intergenic
ATGGTATAACTGTTATCACT+TGG 0.633138 3_1:+71903142 None:intergenic
TTCAACTATTGGGATATCAA+CGG 0.641456 3_1:-71906088 Msa0372990:intron
GAAGGTGAAAATGTTGAACC+GGG 0.643368 3_1:-71904076 Msa0372990:intron
AAGTTCTGGCAATGGTGGTG+TGG 0.643981 3_1:-71908792 Msa0372990:CDS
TTGTATGTCATAGTTGAAGG+AGG 0.649181 3_1:+71908677 None:intergenic
TATAGGTAATTGGATCTGTG+GGG 0.649339 3_1:-71905012 Msa0372990:intron
TATATAATGAACTAAAGACC+TGG 0.671816 3_1:-71903758 Msa0372990:intron
GACTCCGCCCAATTGAATGG+TGG 0.673251 3_1:+71904416 None:intergenic
AGCTTGAAGAAGCTGCCATG+AGG 0.677140 3_1:-71904051 Msa0372990:CDS
TGGCATACTAGTATCATGGG+AGG 0.703281 3_1:+71907336 None:intergenic
GGTTGGAGAAACGTTGATGG+TGG 0.714958 3_1:+71909217 None:intergenic
GTAAAATTACCTAATGCCAG+TGG 0.718488 3_1:-71903180 Msa0372990:three_prime_UTR
CTAGTGCAACACTTTCAGAG+TGG 0.725222 3_1:+71907545 None:intergenic
TGTCAATGAAGCAAACAAGG+AGG 0.744880 3_1:-71907422 Msa0372990:CDS
GGCAATTGGAGCAATCAATG+TGG 0.764361 3_1:-71907614 Msa0372990:CDS
TCTACCTGATGAAAGCACAA+TGG 0.784956 3_1:+71904348 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATATATAACTAATTTTC+AGG - chr3_1:71903927-71903946 Msa0372990:intron 10.0%
!! AACTATTAATCTATATTATA+GGG + chr3_1:71903973-71903992 None:intergenic 10.0%
!! AAACTATTAATCTATATTAT+AGG + chr3_1:71903974-71903993 None:intergenic 10.0%
!!! ATTTTTTTAAAATACTATAC+AGG - chr3_1:71906732-71906751 Msa0372990:intron 10.0%
!! AAAAGAAAAATTTATTAAGT+AGG + chr3_1:71907213-71907232 None:intergenic 10.0%
!! TAATGTAAATAATATAAAGA+TGG + chr3_1:71909023-71909042 None:intergenic 10.0%
!!! TATTTTTTTTATAGAAGTTG+TGG - chr3_1:71903306-71903325 Msa0372990:CDS 15.0%
!! GATATGTAATAATTATGTAT+TGG - chr3_1:71903497-71903516 Msa0372990:intron 15.0%
!! TATATACAAAACTTTATGAT+TGG + chr3_1:71903572-71903591 None:intergenic 15.0%
!!! ATCACTAATTTTATTGTTAT+TGG - chr3_1:71903821-71903840 Msa0372990:CDS 15.0%
!!! TCACTAATTTTATTGTTATT+GGG - chr3_1:71903822-71903841 Msa0372990:CDS 15.0%
!!! AACATGTTTTATTTTAGAAT+TGG + chr3_1:71904678-71904697 None:intergenic 15.0%
!!! ATTCTAAAATAAAACATGTT+TGG - chr3_1:71904678-71904697 Msa0372990:intron 15.0%
!! ATGAATATATATTATAGAGA+AGG + chr3_1:71905126-71905145 None:intergenic 15.0%
!! TGTACAAAATTTATTAACAT+TGG + chr3_1:71906173-71906192 None:intergenic 15.0%
!!! ATTTTGTACAATATGTTTAT+AGG - chr3_1:71906183-71906202 Msa0372990:CDS 15.0%
!!! TTTTGTACAATATGTTTATA+GGG - chr3_1:71906184-71906203 Msa0372990:CDS 15.0%
!!! ATTTTTAATCTAATTGTACT+TGG + chr3_1:71906872-71906891 None:intergenic 15.0%
!!! AATATTTTGCAATTAACTTA+CGG - chr3_1:71908174-71908193 Msa0372990:intron 15.0%
!! TATACAAGACAATTGTAAAA+TGG + chr3_1:71903370-71903389 None:intergenic 20.0%
!! TTGTCTTGTATAAGATTATA+AGG - chr3_1:71903378-71903397 Msa0372990:intron 20.0%
!!! ATTTGTTGTTATTGTCATAT+TGG - chr3_1:71903526-71903545 Msa0372990:intron 20.0%
!!! AATTTTATTGTTATTGGGTA+TGG - chr3_1:71903827-71903846 Msa0372990:CDS 20.0%
!!! GGTTTCTTTTGTTTTATTTT+AGG - chr3_1:71904033-71904052 Msa0372990:CDS 20.0%
!!! TTGTTTTATTTTAGGAGATA+TGG - chr3_1:71904041-71904060 Msa0372990:CDS 20.0%
!! TCAATAATCAAAGTTTCAAA+AGG + chr3_1:71904195-71904214 None:intergenic 20.0%
!! AACTTTGATTATTGAATGTA+TGG - chr3_1:71904200-71904219 Msa0372990:intron 20.0%
!!! GTATTATTTTTTACTACCAA+AGG - chr3_1:71904571-71904590 Msa0372990:intron 20.0%
!!! CATGTTTGAAACAATAAAAT+TGG - chr3_1:71905231-71905250 Msa0372990:intron 20.0%
!! TACAAAGTTTCAAAAACTAA+AGG + chr3_1:71905816-71905835 None:intergenic 20.0%
!!! GTAACATTTGTTTTTGTTTT+TGG - chr3_1:71905905-71905924 Msa0372990:intron 20.0%
!! AATAACAAATAATGACACTA+TGG + chr3_1:71906540-71906559 None:intergenic 20.0%
!!! TAGTGTCATTATTTGTTATT+TGG - chr3_1:71906540-71906559 Msa0372990:intron 20.0%
!!! CTTTGAATTCTATCTTTTAT+AGG - chr3_1:71907401-71907420 Msa0372990:CDS 20.0%
!!! TTCTATCTTTTATAGGTAAT+TGG - chr3_1:71907408-71907427 Msa0372990:CDS 20.0%
!! ACATGATTATTACTTTCATA+AGG + chr3_1:71908322-71908341 None:intergenic 20.0%
!! ATACAGTTTATATTATACGT+AGG + chr3_1:71908483-71908502 None:intergenic 20.0%
!! TAGTTCATTATATATTAGAC+TGG + chr3_1:71908666-71908685 None:intergenic 20.0%
!! ACTCTCAATAATTTAATTAG+AGG + chr3_1:71908826-71908845 None:intergenic 20.0%
!!! TATAATGACAGATTGATAAT+GGG - chr3_1:71909073-71909092 Msa0372990:intron 20.0%
!! TATTACTAATCTAACTATTG+TGG + chr3_1:71909316-71909335 None:intergenic 20.0%
!!! TTTTTTATAGAAGTTGTGGA+AGG - chr3_1:71903310-71903329 Msa0372990:CDS 25.0%
!! TTTTTATAGAAGTTGTGGAA+GGG - chr3_1:71903311-71903330 Msa0372990:CDS 25.0%
! ATATATGCAGACAAAGAAAA+CGG - chr3_1:71903587-71903606 Msa0372990:intron 25.0%
!!! AACAGGTTTTTTTTCTTACT+AGG - chr3_1:71903775-71903794 Msa0372990:CDS 25.0%
! AATTCTTTACACAGAAAGAA+GGG - chr3_1:71903880-71903899 Msa0372990:CDS 25.0%
!!! ACTAATTTTCAGGTTTACTT+AGG - chr3_1:71903937-71903956 Msa0372990:intron 25.0%
! TTTAATCAATGATCTTTGTG+TGG - chr3_1:71904012-71904031 Msa0372990:intron 25.0%
! TTGTCTGAAGATTTATTGAT+AGG - chr3_1:71904264-71904283 Msa0372990:intron 25.0%
! TGTCTGAAGATTTATTGATA+GGG - chr3_1:71904265-71904284 Msa0372990:intron 25.0%
! TAAAACATGTTTGGTTAAAG+TGG - chr3_1:71904687-71904706 Msa0372990:intron 25.0%
! ATTGAGGTCTTCAAATAAAA+TGG + chr3_1:71904949-71904968 None:intergenic 25.0%
! CAGAATAATAAATCTGATTG+AGG + chr3_1:71904965-71904984 None:intergenic 25.0%
! TCAGATTTATTATTCTGCTT+TGG - chr3_1:71904968-71904987 Msa0372990:CDS 25.0%
! CAGATTTATTATTCTGCTTT+GGG - chr3_1:71904969-71904988 Msa0372990:CDS 25.0%
! AGATTTATTATTCTGCTTTG+GGG - chr3_1:71904970-71904989 Msa0372990:CDS 25.0%
!! TTCATGGAAGTCATAAATTT+TGG - chr3_1:71905045-71905064 Msa0372990:intron 25.0%
!! TCATGGAAGTCATAAATTTT+GGG - chr3_1:71905046-71905065 Msa0372990:intron 25.0%
! TATATTTAAACCTTCATGCA+TGG - chr3_1:71905680-71905699 Msa0372990:intron 25.0%
!! CATGTACTATATTTTGTTCT+AGG - chr3_1:71905749-71905768 Msa0372990:intron 25.0%
!!! TATTTTGTTCTAGGATGATT+TGG - chr3_1:71905758-71905777 Msa0372990:intron 25.0%
!!! ATTTTGTTCTAGGATGATTT+GGG - chr3_1:71905759-71905778 Msa0372990:intron 25.0%
!!! TAGTTTTTGAAACTTTGTAC+AGG - chr3_1:71905817-71905836 Msa0372990:CDS 25.0%
!!! AATTTGTTTTGTTCAGCTTT+TGG + chr3_1:71906098-71906117 None:intergenic 25.0%
! CATGATAAAACATGTAAAGT+AGG + chr3_1:71906134-71906153 None:intergenic 25.0%
!! CTACTTTACATGTTTTATCA+TGG - chr3_1:71906132-71906151 Msa0372990:CDS 25.0%
!!! CATTTTTGTTATTCTCAAAC+AGG - chr3_1:71906681-71906700 Msa0372990:intron 25.0%
! TAAAATACTATACAGGCTAT+TGG - chr3_1:71906739-71906758 Msa0372990:intron 25.0%
! AGAGATATCATGATATAAAC+CGG - chr3_1:71907061-71907080 Msa0372990:intron 25.0%
!! TTTATCACATGGTAGATTTT+AGG + chr3_1:71907107-71907126 None:intergenic 25.0%
!! TTCTCTACATTTTTATCACA+TGG + chr3_1:71907118-71907137 None:intergenic 25.0%
! TGTAGAGAATAACAATTACT+AGG - chr3_1:71907129-71907148 Msa0372990:CDS 25.0%
!!! GTTTTGTTAAGAAATCAGAA+AGG - chr3_1:71907151-71907170 Msa0372990:CDS 25.0%
!! AATGATGGTTCTACTTAATT+AGG - chr3_1:71907177-71907196 Msa0372990:CDS 25.0%
! AACATATGATGTAGAATAGA+TGG + chr3_1:71907246-71907265 None:intergenic 25.0%
! AAAAATCGTAACAATTTCGT+TGG - chr3_1:71907629-71907648 Msa0372990:intron 25.0%
!! TCAAGTATTTATAAGGTATC+TGG + chr3_1:71907712-71907731 None:intergenic 25.0%
!!! AAGAGTTACTTTCCATTTTT+CGG - chr3_1:71908232-71908251 Msa0372990:intron 25.0%
! AACAACATAGTTGCAATTAA+GGG + chr3_1:71908259-71908278 None:intergenic 25.0%
! AAACAACATAGTTGCAATTA+AGG + chr3_1:71908260-71908279 None:intergenic 25.0%
! ATACAACAAATTGTTGTCAT+TGG - chr3_1:71908411-71908430 Msa0372990:intron 25.0%
!!! GCTTTAAAAATTTTGGTTCA+AGG - chr3_1:71908457-71908476 Msa0372990:intron 25.0%
! ATGCAATGATTTCACTTATT+TGG - chr3_1:71908517-71908536 Msa0372990:intron 25.0%
! TTTCACTTATTTGGACATAT+AGG - chr3_1:71908526-71908545 Msa0372990:intron 25.0%
! ATTTGGACATATAGGATAAA+CGG - chr3_1:71908534-71908553 Msa0372990:intron 25.0%
!! TTTAAGACTTCTTCTTTGTT+AGG + chr3_1:71908581-71908600 None:intergenic 25.0%
! TAACAAAGAAGAAGTCTTAA+AGG - chr3_1:71908580-71908599 Msa0372990:intron 25.0%
! TATATAATGAACTAAAGACC+TGG - chr3_1:71908672-71908691 Msa0372990:intron 25.0%
! CTATAATGACAGATTGATAA+TGG - chr3_1:71909072-71909091 Msa0372990:intron 25.0%
!! TTAGGTAATTTTACTGGTAT+AGG + chr3_1:71909244-71909263 None:intergenic 25.0%
! TAATCTAACTATTGTGGTAA+TGG + chr3_1:71909310-71909329 None:intergenic 25.0%
! AAAACAATACAACAAGTTAG+AGG + chr3_1:71909371-71909390 None:intergenic 25.0%
!! AAGAAGAAGAGATAATGGAA+TGG + chr3_1:71903089-71903108 None:intergenic 30.0%
TCGTTAGTGTTGTGTATTAT+TGG + chr3_1:71903347-71903366 None:intergenic 30.0%
TGCCAGAACTTTCTAATAAA+GGG + chr3_1:71903629-71903648 None:intergenic 30.0%
TTGCCAGAACTTTCTAATAA+AGG + chr3_1:71903630-71903649 None:intergenic 30.0%
! TTATTAGAAAGTTCTGGCAA+TGG - chr3_1:71903630-71903649 Msa0372990:intron 30.0%
TGTTTGTATGTCATAGTTGA+AGG + chr3_1:71903759-71903778 None:intergenic 30.0%
TTCAACTATGACATACAAAC+AGG - chr3_1:71903758-71903777 Msa0372990:intron 30.0%
GAATTCTTTACACAGAAAGA+AGG - chr3_1:71903879-71903898 Msa0372990:CDS 30.0%
ATTCTTTACACAGAAAGAAG+GGG - chr3_1:71903881-71903900 Msa0372990:CDS 30.0%
!!! TAGTTTTGAAGAATAAGCAC+CGG - chr3_1:71903988-71904007 Msa0372990:intron 30.0%
! CAAAGATCATTGATTAAAGC+CGG + chr3_1:71904010-71904029 None:intergenic 30.0%
!! GAGATATGGTTGAGTTTTAT+TGG - chr3_1:71904055-71904074 Msa0372990:CDS 30.0%
!!! ATATGGTTGAGTTTTATTGG+TGG - chr3_1:71904058-71904077 Msa0372990:CDS 30.0%
ATTCTTAAACCATTGTCTTG+TGG - chr3_1:71904156-71904175 Msa0372990:intron 30.0%
CATTATATTCCACAAGACAA+TGG + chr3_1:71904168-71904187 None:intergenic 30.0%
TTGTCTTGTGGAATATAATG+TGG - chr3_1:71904168-71904187 Msa0372990:intron 30.0%
TTATCCCTTGAAATCTCATT+CGG - chr3_1:71904375-71904394 Msa0372990:CDS 30.0%
TTTCTTACCAACATTTCAGT+TGG - chr3_1:71904423-71904442 Msa0372990:CDS 30.0%
! TGCAATTTTAAACTTTGCTG+AGG - chr3_1:71904450-71904469 Msa0372990:CDS 30.0%
! GCAATTTTAAACTTTGCTGA+GGG - chr3_1:71904451-71904470 Msa0372990:CDS 30.0%
! CAATTTTAAACTTTGCTGAG+GGG - chr3_1:71904452-71904471 Msa0372990:CDS 30.0%
! AAAAGAGCAATTTTCTCATC+AGG + chr3_1:71904499-71904518 None:intergenic 30.0%
TGATGTGAACTTATTACCTA+CGG - chr3_1:71904603-71904622 Msa0372990:intron 30.0%
ATTCTTAAAGCATGCAAAGT+CGG - chr3_1:71904720-71904739 Msa0372990:intron 30.0%
GCAATCTGATTATACATTTC+AGG + chr3_1:71904922-71904941 None:intergenic 30.0%
ACTTCCATGAATGTATAGAT+TGG + chr3_1:71905036-71905055 None:intergenic 30.0%
! ATATATTATAGAGAAGGTGC+AGG + chr3_1:71905120-71905139 None:intergenic 30.0%
ATCTGTCATAAACTTTACTG+TGG - chr3_1:71905352-71905371 Msa0372990:intron 30.0%
AAGATCATAGAACTCTTGTA+AGG - chr3_1:71905421-71905440 Msa0372990:intron 30.0%
TCTTGTAAGGCTATGATTAT+TGG - chr3_1:71905434-71905453 Msa0372990:intron 30.0%
TTTCTAGATCAAACACCTAT+CGG - chr3_1:71905505-71905524 Msa0372990:intron 30.0%
ACGTTATAAGCCACATTTAA+TGG - chr3_1:71905782-71905801 Msa0372990:intron 30.0%
TTCATACAATTCCTGAGAAA+AGG + chr3_1:71905848-71905867 None:intergenic 30.0%
CAAATGTTACTATTCACAAG+TGG + chr3_1:71905895-71905914 None:intergenic 30.0%
ATTATATCCAGTTCATATGC+TGG - chr3_1:71906291-71906310 Msa0372990:intron 30.0%
TCATATGCTGGCAAATAAAT+TGG - chr3_1:71906303-71906322 Msa0372990:intron 30.0%
AGTAAAATCCGTTCAACTAT+TGG - chr3_1:71906331-71906350 Msa0372990:intron 30.0%
GTAAAATCCGTTCAACTATT+GGG - chr3_1:71906332-71906351 Msa0372990:intron 30.0%
TTGATATCCCAATAGTTGAA+CGG + chr3_1:71906342-71906361 None:intergenic 30.0%
TTCAACTATTGGGATATCAA+CGG - chr3_1:71906342-71906361 Msa0372990:intron 30.0%
AAAAACTTGTCAACATGAGA+AGG + chr3_1:71906644-71906663 None:intergenic 30.0%
!!! TCATGTTGACAAGTTTTTTG+AGG - chr3_1:71906646-71906665 Msa0372990:CDS 30.0%
!! ATTGGTTTGAATTTGCAGAA+TGG - chr3_1:71906757-71906776 Msa0372990:intron 30.0%
TTGAATTTGCAGAATGGATA+TGG - chr3_1:71906763-71906782 Msa0372990:intron 30.0%
GGTAGAATATTTAAGTAACC+TGG - chr3_1:71906971-71906990 Msa0372990:intron 30.0%
TTAACTCAACATCACATAAC+CGG + chr3_1:71907083-71907102 None:intergenic 30.0%
AAATCAGAAAGGCTAAATGA+TGG - chr3_1:71907162-71907181 Msa0372990:CDS 30.0%
TTTATAGGTAATTGGATCTG+TGG - chr3_1:71907416-71907435 Msa0372990:CDS 30.0%
TTATAGGTAATTGGATCTGT+GGG - chr3_1:71907417-71907436 Msa0372990:CDS 30.0%
TTGAATTCTGTATGCTTAAG+TGG + chr3_1:71907447-71907466 None:intergenic 30.0%
!! AAAGTTGTAGATTCTGAAAC+TGG - chr3_1:71907465-71907484 Msa0372990:CDS 30.0%
!! AAAGGGAATTTTGAAAGTCA+GGG - chr3_1:71907509-71907528 Msa0372990:CDS 30.0%
ACTACAAGGTAAAATAGTCT+TGG - chr3_1:71907553-71907572 Msa0372990:CDS 30.0%
!!! CGATTTTTTCATATACACAC+TGG + chr3_1:71907617-71907636 None:intergenic 30.0%
CCAGTCTTCAAGTATTTATA+AGG + chr3_1:71907719-71907738 None:intergenic 30.0%
CCTTATAAATACTTGAAGAC+TGG - chr3_1:71907716-71907735 Msa0372990:intron 30.0%
CTGGAACAAGGAATTATAAA+AGG - chr3_1:71907735-71907754 Msa0372990:intron 30.0%
TGTAACTTACACACTTTGAT+CGG + chr3_1:71907900-71907919 None:intergenic 30.0%
!! TGACAACAATTTGTTGTATG+AGG + chr3_1:71908410-71908429 None:intergenic 30.0%
!!! CTTGACGGCTTTAAAAATTT+TGG - chr3_1:71908450-71908469 Msa0372990:intron 30.0%
TGAGAGTGAAACTAAATACA+AGG - chr3_1:71908839-71908858 Msa0372990:intron 30.0%
TGAAACTAAATACAAGGCTA+GGG - chr3_1:71908845-71908864 Msa0372990:intron 30.0%
CATTACAGAATTGACGTATT+TGG - chr3_1:71909038-71909057 Msa0372990:intron 30.0%
ACTTGTATAGATTCTCTATC+TGG + chr3_1:71909155-71909174 None:intergenic 30.0%
TGTAACATACCATTGACATT+AGG + chr3_1:71909185-71909204 None:intergenic 30.0%
AATAGTTATAGCTCAAACAC+AGG - chr3_1:71909205-71909224 Msa0372990:CDS 30.0%
ATGGTATAACTGTTATCACT+TGG + chr3_1:71909291-71909310 None:intergenic 30.0%
!! GAAGAGATAATGGAATGGAA+TGG + chr3_1:71903084-71903103 None:intergenic 35.0%
! AGAAGCATAGTTGTAGTTAG+CGG + chr3_1:71903147-71903166 None:intergenic 35.0%
CAAAGAAAACGGAGATAAGA+AGG - chr3_1:71903598-71903617 Msa0372990:intron 35.0%
TCCCCTTTATTAGAAAGTTC+TGG - chr3_1:71903624-71903643 Msa0372990:intron 35.0%
GCCAGAACTTTCTAATAAAG+GGG + chr3_1:71903628-71903647 None:intergenic 35.0%
GTATGGTGATAAAGTAGCTT+TGG - chr3_1:71903713-71903732 Msa0372990:intron 35.0%
TTGTATGTCATAGTTGAAGG+AGG + chr3_1:71903756-71903775 None:intergenic 35.0%
!! TTCTTACTAGGTTGATAGCA+TGG - chr3_1:71903787-71903806 Msa0372990:CDS 35.0%
!! TAGGTTGATAGCATGGAAAA+CGG - chr3_1:71903794-71903813 Msa0372990:CDS 35.0%
! AGAGTTTGGTTCAAAGTAGA+TGG - chr3_1:71903857-71903876 Msa0372990:CDS 35.0%
ACAACCGAATGAGATTTCAA+GGG + chr3_1:71904382-71904401 None:intergenic 35.0%
TACAACCGAATGAGATTTCA+AGG + chr3_1:71904383-71904402 None:intergenic 35.0%
TTCTTAAAGCATGCAAAGTC+GGG - chr3_1:71904721-71904740 Msa0372990:intron 35.0%
ATACATTTCAGGATTGTCCA+CGG + chr3_1:71904911-71904930 None:intergenic 35.0%
TGATCAAGAGAAAGGCTAAT+AGG + chr3_1:71905150-71905169 None:intergenic 35.0%
!! CCTTTTGATGATCAAGAGAA+AGG + chr3_1:71905158-71905177 None:intergenic 35.0%
CCTTTCTCTTGATCATCAAA+AGG - chr3_1:71905155-71905174 Msa0372990:intron 35.0%
CATCAAAAGGAACAGTAATC+AGG - chr3_1:71905168-71905187 Msa0372990:intron 35.0%
TCATCTACATTGTGATTGCA+GGG - chr3_1:71905203-71905222 Msa0372990:intron 35.0%
CTGATGCAAAAGATTCTGAT+GGG + chr3_1:71905320-71905339 None:intergenic 35.0%
! GAGTATTTCATTTTCTCACG+TGG - chr3_1:71905602-71905621 Msa0372990:intron 35.0%
CACTACTGTAAGAAACTTGA+AGG - chr3_1:71905640-71905659 Msa0372990:CDS 35.0%
ATGCCATAAAAGAACACTCA+TGG - chr3_1:71905709-71905728 Msa0372990:intron 35.0%
! AAGCCATGAGTGTTCTTTTA+TGG + chr3_1:71905715-71905734 None:intergenic 35.0%
GGAACAGAAACCATTAAATG+TGG + chr3_1:71905795-71905814 None:intergenic 35.0%
AACATTGCATAGAGATAGGA+AGG + chr3_1:71906238-71906257 None:intergenic 35.0%
TTCCTATCTCTATGCAATGT+TGG - chr3_1:71906237-71906256 Msa0372990:intron 35.0%
ATCCAACATTGCATAGAGAT+AGG + chr3_1:71906242-71906261 None:intergenic 35.0%
ATCTCTATGCAATGTTGGAT+TGG - chr3_1:71906242-71906261 Msa0372990:intron 35.0%
TTATTTGCCAGCATATGAAC+TGG + chr3_1:71906301-71906320 None:intergenic 35.0%
CACAAGTAATTTGAAGAGTG+TGG + chr3_1:71906490-71906509 None:intergenic 35.0%
! TCAAACAGGAACCTTCTTTT+CGG - chr3_1:71906695-71906714 Msa0372990:intron 35.0%
TTAGAAGATAGCCGAAAAGA+AGG + chr3_1:71906709-71906728 None:intergenic 35.0%
TGGTTTAACAGAAACTTCAC+CGG - chr3_1:71906783-71906802 Msa0372990:intron 35.0%
TGATAGAGACTTGGGTATTA+TGG - chr3_1:71906910-71906929 Msa0372990:CDS 35.0%
GATAGAGACTTGGGTATTAT+GGG - chr3_1:71906911-71906930 Msa0372990:CDS 35.0%
ATAGAGACTTGGGTATTATG+GGG - chr3_1:71906912-71906931 Msa0372990:CDS 35.0%
TATCCCATACTACACCATTT+GGG + chr3_1:71906948-71906967 None:intergenic 35.0%
TTAAAAGCAAGCTATCGAAG+AGG + chr3_1:71907002-71907021 None:intergenic 35.0%
GGTTCTACTTAATTAGGTGT+TGG - chr3_1:71907183-71907202 Msa0372990:CDS 35.0%
TATAGGTAATTGGATCTGTG+GGG - chr3_1:71907418-71907437 Msa0372990:CDS 35.0%
TTCAAAATTCCCTTTGAACC+AGG + chr3_1:71907504-71907523 None:intergenic 35.0%
!! CAAAGGGAATTTTGAAAGTC+AGG - chr3_1:71907508-71907527 Msa0372990:CDS 35.0%
!! AAGGGAATTTTGAAAGTCAG+GGG - chr3_1:71907510-71907529 Msa0372990:CDS 35.0%
AATACTTGAAGACTGGAACA+AGG - chr3_1:71907723-71907742 Msa0372990:intron 35.0%
TTGCTTGTTCATCAAGGAAA+AGG + chr3_1:71907794-71907813 None:intergenic 35.0%
CAAAAGTTGCTTGTTCATCA+AGG + chr3_1:71907800-71907819 None:intergenic 35.0%
AGAATCCTTCAGCTACAAAT+CGG - chr3_1:71907938-71907957 Msa0372990:CDS 35.0%
TACAAATCGGGTCATTGATA+GGG - chr3_1:71907951-71907970 Msa0372990:CDS 35.0%
!!! TGTGTATGTTGCTTTTCATG+TGG - chr3_1:71908114-71908133 Msa0372990:intron 35.0%
TCATGTGTTTCAACATGAGA+AGG - chr3_1:71908336-71908355 Msa0372990:intron 35.0%
AGAAGGTGAAAATGTTGAAC+CGG - chr3_1:71908353-71908372 Msa0372990:intron 35.0%
ACAAATTGTTGTCATTGGTC+AGG - chr3_1:71908416-71908435 Msa0372990:intron 35.0%
CAGGTGAGTTTAAATCTTGA+CGG - chr3_1:71908435-71908454 Msa0372990:intron 35.0%
CTGACTAACATCTGAACTAT+TGG + chr3_1:71908633-71908652 None:intergenic 35.0%
CAATAGTTCAGATGTTAGTC+AGG - chr3_1:71908631-71908650 Msa0372990:intron 35.0%
AAGTAAGACAAGATCTTACC+AGG + chr3_1:71908693-71908712 None:intergenic 35.0%
AGATCTTGTCTTACTTCTGT+TGG - chr3_1:71908697-71908716 Msa0372990:CDS 35.0%
!! TGTTGGTGATTGTGTTTACA+AGG - chr3_1:71908714-71908733 Msa0372990:CDS 35.0%
GTGATTGTGTTTACAAGGAA+GGG - chr3_1:71908719-71908738 Msa0372990:CDS 35.0%
TCAGTTAAAGTTTGCGTGAA+TGG - chr3_1:71908778-71908797 Msa0372990:CDS 35.0%
GTGAAACTAAATACAAGGCT+AGG - chr3_1:71908844-71908863 Msa0372990:intron 35.0%
GAAACTAAATACAAGGCTAG+GGG - chr3_1:71908846-71908865 Msa0372990:intron 35.0%
ATGCTTAATCTAACCGTGAA+GGG + chr3_1:71908989-71909008 None:intergenic 35.0%
ATAGAGTTATGGCTCAATAC+AGG - chr3_1:71909127-71909146 Msa0372990:intron 35.0%
TAGAGTTATGGCTCAATACA+GGG - chr3_1:71909128-71909147 Msa0372990:intron 35.0%
GTAAACCAACCTAATGTCAA+TGG - chr3_1:71909173-71909192 Msa0372990:intron 35.0%
ACATACCATTGACATTAGGT+TGG + chr3_1:71909181-71909200 None:intergenic 35.0%
! CTGGCATTAGGTAATTTTAC+TGG + chr3_1:71909250-71909269 None:intergenic 35.0%
GTAAAATTACCTAATGCCAG+TGG - chr3_1:71909250-71909269 Msa0372990:CDS 35.0%
GGCAGAAGAAGAAGAGATAA+TGG + chr3_1:71903094-71903113 None:intergenic 40.0%
CTTCTTCTGCCAAATTCCAA+TGG - chr3_1:71903103-71903122 Msa0372990:three_prime_UTR 40.0%
! CTTTTGCCATACTCAATCCA+AGG - chr3_1:71903250-71903269 Msa0372990:three_prime_UTR 40.0%
TACGTACCTTGGATTGAGTA+TGG + chr3_1:71903259-71903278 None:intergenic 40.0%
ATAGAAGCAGTTACGTACCT+TGG + chr3_1:71903270-71903289 None:intergenic 40.0%
GCGTATATGAATAGTACTGC+AGG + chr3_1:71903461-71903480 None:intergenic 40.0%
! ATACGCGTTACGTGTTTTTC+AGG - chr3_1:71903475-71903494 Msa0372990:CDS 40.0%
! TTAGAAAGTTCTGGCAATGG+TGG - chr3_1:71903633-71903652 Msa0372990:intron 40.0%
GGAAAGCAGTTCCTGATATT+TGG - chr3_1:71903673-71903692 Msa0372990:intron 40.0%
GCAGAAGTTCTCCAAATATC+AGG + chr3_1:71903687-71903706 None:intergenic 40.0%
AGAACTTCTGCAGAGAAGTA+TGG - chr3_1:71903696-71903715 Msa0372990:intron 40.0%
GGTATGGTTAGAGTAGAGTT+TGG - chr3_1:71903843-71903862 Msa0372990:CDS 40.0%
!!! TGGTTGAGTTTTATTGGTGG+TGG - chr3_1:71904061-71904080 Msa0372990:CDS 40.0%
!!! GGTTGAGTTTTATTGGTGGT+GGG - chr3_1:71904062-71904081 Msa0372990:CDS 40.0%
CAAGGGATAAGTTTCACACA+TGG + chr3_1:71904365-71904384 None:intergenic 40.0%
CTTACCAACATTTCAGTTGG+AGG - chr3_1:71904426-71904445 Msa0372990:CDS 40.0%
CACATCAACATTGCAACCTT+TGG + chr3_1:71904590-71904609 None:intergenic 40.0%
TTATTACCTACGGTCCTGTT+TGG - chr3_1:71904613-71904632 Msa0372990:intron 40.0%
TATTACCTACGGTCCTGTTT+GGG - chr3_1:71904614-71904633 Msa0372990:intron 40.0%
CCTAGACTAAACACATAGCA+TGG + chr3_1:71904790-71904809 None:intergenic 40.0%
CCATGCTATGTGTTTAGTCT+AGG - chr3_1:71904787-71904806 Msa0372990:intron 40.0%
TGTGTTTAGTCTAGGCATGA+TGG - chr3_1:71904795-71904814 Msa0372990:intron 40.0%
TTGGAGCAATCAATGTGGTT+AGG - chr3_1:71904821-71904840 Msa0372990:intron 40.0%
TGGAGCAATCAATGTGGTTA+GGG - chr3_1:71904822-71904841 Msa0372990:intron 40.0%
! CCTTGTTTGCTTCATTGACA+AGG + chr3_1:71905008-71905027 None:intergenic 40.0%
CCTTGTCAATGAAGCAAACA+AGG - chr3_1:71905005-71905024 Msa0372990:CDS 40.0%
TGTCAATGAAGCAAACAAGG+AGG - chr3_1:71905008-71905027 Msa0372990:CDS 40.0%
GGTGCCAATCTATACATTCA+TGG - chr3_1:71905029-71905048 Msa0372990:intron 40.0%
AGGTGGCATACTAGTATCAT+GGG + chr3_1:71905100-71905119 None:intergenic 40.0%
! TATTATAGAGAAGGTGCAGG+TGG + chr3_1:71905117-71905136 None:intergenic 40.0%
CTCATCTACATTGTGATTGC+AGG - chr3_1:71905202-71905221 Msa0372990:intron 40.0%
GGTACTACTGGAAATCCTAA+AGG - chr3_1:71905283-71905302 Msa0372990:intron 40.0%
!! TGGGTTAGCATAACACCTTT+AGG + chr3_1:71905301-71905320 None:intergenic 40.0%
CCTGATGCAAAAGATTCTGA+TGG + chr3_1:71905321-71905340 None:intergenic 40.0%
! CCATCAGAATCTTTTGCATC+AGG - chr3_1:71905318-71905337 Msa0372990:intron 40.0%
AATCTATCTCCAGCTTCAGT+AGG + chr3_1:71905539-71905558 None:intergenic 40.0%
TTCTAAGTATGTTGCCTCCT+TGG - chr3_1:71905558-71905577 Msa0372990:intron 40.0%
! TACAGGTAACTCCTTTTCTC+AGG - chr3_1:71905834-71905853 Msa0372990:intron 40.0%
!!! TGTTTTTGGTTCCTCTGTAG+TGG - chr3_1:71905919-71905938 Msa0372990:intron 40.0%
!!! GTTTTTGGTTCCTCTGTAGT+GGG - chr3_1:71905920-71905939 Msa0372990:intron 40.0%
TTGTCGCTCTCACATTCATA+AGG - chr3_1:71905983-71906002 Msa0372990:intron 40.0%
TGTCGCTCTCACATTCATAA+GGG - chr3_1:71905984-71906003 Msa0372990:intron 40.0%
ACATTCATAAGGGTCAGCTT+AGG - chr3_1:71905994-71906013 Msa0372990:intron 40.0%
GGAGTGTAAGCGAATTTATG+AGG - chr3_1:71906023-71906042 Msa0372990:intron 40.0%
GTAAGCGAATTTATGAGGTC+TGG - chr3_1:71906028-71906047 Msa0372990:intron 40.0%
GGAAGGTGATTTCTGATTCT+TGG + chr3_1:71906221-71906240 None:intergenic 40.0%
!! ATGCAATGTTGGATTGGCTA+TGG - chr3_1:71906248-71906267 Msa0372990:intron 40.0%
!! TGCAATGTTGGATTGGCTAT+GGG - chr3_1:71906249-71906268 Msa0372990:intron 40.0%
TTGGCTATGGGCAAGAATTA+TGG - chr3_1:71906261-71906280 Msa0372990:intron 40.0%
!! AATGCATCACTTTTCTGCTC+AGG - chr3_1:71906564-71906583 Msa0372990:intron 40.0%
ACCTTCATGTGATAGAGACT+TGG - chr3_1:71906901-71906920 Msa0372990:CDS 40.0%
CCTTCATGTGATAGAGACTT+GGG - chr3_1:71906902-71906921 Msa0372990:CDS 40.0%
AAGTCCCAAATGGTGTAGTA+TGG - chr3_1:71906941-71906960 Msa0372990:intron 40.0%
AGTCCCAAATGGTGTAGTAT+GGG - chr3_1:71906942-71906961 Msa0372990:intron 40.0%
GTATCCCATACTACACCATT+TGG + chr3_1:71906949-71906968 None:intergenic 40.0%
ATGGTGTAGTATGGGATACT+CGG - chr3_1:71906950-71906969 Msa0372990:intron 40.0%
TGAGAAATATCCAATCCTCG+AGG + chr3_1:71907034-71907053 None:intergenic 40.0%
ACAAACCTCTAGACAGAGAT+CGG + chr3_1:71907298-71907317 None:intergenic 40.0%
AAAATTCCCTTTGAACCAGG+TGG + chr3_1:71907501-71907520 None:intergenic 40.0%
AGTACCCCTTCATCAATTGT+GGG + chr3_1:71907536-71907555 None:intergenic 40.0%
TAGTACCCCTTCATCAATTG+TGG + chr3_1:71907537-71907556 None:intergenic 40.0%
!! ATTGATGAAGGGGTACTACA+AGG - chr3_1:71907539-71907558 Msa0372990:CDS 40.0%
! TGAACAAGCAACTTTTGCGA+TGG - chr3_1:71907803-71907822 Msa0372990:intron 40.0%
GAATCCTTCAGCTACAAATC+GGG - chr3_1:71907939-71907958 Msa0372990:CDS 40.0%
CTACAAATCGGGTCATTGAT+AGG - chr3_1:71907950-71907969 Msa0372990:CDS 40.0%
TGAATACTGGTGACATAGGT+TGG - chr3_1:71907983-71908002 Msa0372990:CDS 40.0%
! TCTACCTGATGAAAGCACAA+TGG + chr3_1:71908085-71908104 None:intergenic 40.0%
GCAATTAAGGGTCCGAAAAA+TGG + chr3_1:71908247-71908266 None:intergenic 40.0%
CATAGAAAGCCTGTTGTCAT+TGG - chr3_1:71908288-71908307 Msa0372990:intron 40.0%
GAGAAAGAACCAATGACAAC+AGG + chr3_1:71908300-71908319 None:intergenic 40.0%
GAAGGTGAAAATGTTGAACC+GGG - chr3_1:71908354-71908373 Msa0372990:intron 40.0%
TTGTATGAGGTTACTCCTCA+TGG + chr3_1:71908397-71908416 None:intergenic 40.0%
ATATAGGATAAACGGCGTCT+AGG - chr3_1:71908542-71908561 Msa0372990:intron 40.0%
GGTGATTGTGTTTACAAGGA+AGG - chr3_1:71908718-71908737 Msa0372990:CDS 40.0%
TCAGGGTTTCCATTTCAGAT+TGG - chr3_1:71908941-71908960 Msa0372990:intron 40.0%
CAGGGTTTCCATTTCAGATT+GGG - chr3_1:71908942-71908961 Msa0372990:intron 40.0%
GGATCATTTACGAGAAGGAT+TGG + chr3_1:71908968-71908987 None:intergenic 40.0%
TGAAGGGATCATTTACGAGA+AGG + chr3_1:71908973-71908992 None:intergenic 40.0%
TCTCGTAAATGATCCCTTCA+CGG - chr3_1:71908973-71908992 Msa0372990:intron 40.0%
GATGCTTAATCTAACCGTGA+AGG + chr3_1:71908990-71909009 None:intergenic 40.0%
ACCCACAATGAAAGTTCGAA+GGG - chr3_1:71909104-71909123 Msa0372990:intron 40.0%
TCCCTTCGAACTTTCATTGT+GGG + chr3_1:71909108-71909127 None:intergenic 40.0%
ATCCCTTCGAACTTTCATTG+TGG + chr3_1:71909109-71909128 None:intergenic 40.0%
AGTTCGAAGGGATAGAGTTA+TGG - chr3_1:71909116-71909135 Msa0372990:intron 40.0%
AGCTCAAACACAGGATCAAA+TGG - chr3_1:71909214-71909233 Msa0372990:CDS 40.0%
CTTCTGCCAAATTCCAATGG+CGG - chr3_1:71903106-71903125 Msa0372990:three_prime_UTR 45.0%
TTCTGCCAAATTCCAATGGC+GGG - chr3_1:71903107-71903126 Msa0372990:three_prime_UTR 45.0%
GAATTCCCGCCATTGGAATT+TGG + chr3_1:71903115-71903134 None:intergenic 45.0%
TTGTAGTTAGCGGAGGTGAT+AGG + chr3_1:71903137-71903156 None:intergenic 45.0%
AGCATAGTTGTAGTTAGCGG+AGG + chr3_1:71903144-71903163 None:intergenic 45.0%
GAAGAGAGGAAGTGAATGGA+TGG + chr3_1:71903171-71903190 None:intergenic 45.0%
CGAAGAAGAGAGGAAGTGAA+TGG + chr3_1:71903175-71903194 None:intergenic 45.0%
GCAAAAGACGCGAAAAGAAG+CGG + chr3_1:71903237-71903256 None:intergenic 45.0%
TCTACGAGATGTTAGCTCAG+TGG + chr3_1:71903415-71903434 None:intergenic 45.0%
GCATCCTCCAACTGAAATGT+TGG + chr3_1:71904433-71904452 None:intergenic 45.0%
ATTACCTACGGTCCTGTTTG+GGG - chr3_1:71904615-71904634 Msa0372990:intron 45.0%
AAATTGCAACCACCCCAAAC+AGG + chr3_1:71904630-71904649 None:intergenic 45.0%
AAAGTCGGGATCATCTACAC+TGG - chr3_1:71904735-71904754 Msa0372990:intron 45.0%
AGTCTAGGCATGATGGCAAT+TGG - chr3_1:71904802-71904821 Msa0372990:intron 45.0%
GGCAATTGGAGCAATCAATG+TGG - chr3_1:71904816-71904835 Msa0372990:intron 45.0%
GGAGCAATCAATGTGGTTAG+GGG - chr3_1:71904823-71904842 Msa0372990:intron 45.0%
TCAATGTGGTTAGGGGTTCA+AGG - chr3_1:71904830-71904849 Msa0372990:intron 45.0%
CTAGTGCAACACTTTCAGAG+TGG + chr3_1:71904888-71904907 None:intergenic 45.0%
TGGCATACTAGTATCATGGG+AGG + chr3_1:71905097-71905116 None:intergenic 45.0%
CAGGTGGCATACTAGTATCA+TGG + chr3_1:71905101-71905120 None:intergenic 45.0%
GCTACTCTTGTGTACACAAG+TGG - chr3_1:71905262-71905281 Msa0372990:intron 45.0%
GTGTACACAAGTGGTACTAC+TGG - chr3_1:71905271-71905290 Msa0372990:intron 45.0%
CTTTCATATGCATGCCAAGG+AGG + chr3_1:71905575-71905594 None:intergenic 45.0%
GCTCTTTCATATGCATGCCA+AGG + chr3_1:71905578-71905597 None:intergenic 45.0%
GCATACAGTACCATGCATGA+AGG + chr3_1:71905693-71905712 None:intergenic 45.0%
AAGGGTCAGCTTAGGATACA+TGG - chr3_1:71906002-71906021 Msa0372990:intron 45.0%
! GATTGACTGACTCTGTTGAG+AGG - chr3_1:71906441-71906460 Msa0372990:CDS 45.0%
TGTTGAGAGGCAAAACGTCT+TGG - chr3_1:71906454-71906473 Msa0372990:CDS 45.0%
GTTGAGAGGCAAAACGTCTT+GGG - chr3_1:71906455-71906474 Msa0372990:CDS 45.0%
! CAAAACCTTTTGCACTCTGC+AGG - chr3_1:71906592-71906611 Msa0372990:intron 45.0%
CCCAAGTCTCTATCACATGA+AGG + chr3_1:71906905-71906924 None:intergenic 45.0%
GCTATCGAAGAGGAATAACC+AGG + chr3_1:71906992-71907011 None:intergenic 45.0%
! AGATCGGGAAGAAAGGTGTA+CGG + chr3_1:71907282-71907301 None:intergenic 45.0%
TAGACAGAGATCGGGAAGAA+AGG + chr3_1:71907289-71907308 None:intergenic 45.0%
CAAACCTCTAGACAGAGATC+GGG + chr3_1:71907297-71907316 None:intergenic 45.0%
AGTTCTTCCACCTGGTTCAA+AGG - chr3_1:71907491-71907510 Msa0372990:CDS 45.0%
GTTCTTCCACCTGGTTCAAA+GGG - chr3_1:71907492-71907511 Msa0372990:CDS 45.0%
GCTCACATCACATTCATCCA+CGG - chr3_1:71907857-71907876 Msa0372990:intron 45.0%
CTCACATCACATTCATCCAC+GGG - chr3_1:71907858-71907877 Msa0372990:intron 45.0%
TCACATCACATTCATCCACG+GGG - chr3_1:71907859-71907878 Msa0372990:intron 45.0%
CATGAGTAAATAAGACCCCG+TGG + chr3_1:71907877-71907896 None:intergenic 45.0%
! ATGACCCGATTTGTAGCTGA+AGG + chr3_1:71907946-71907965 None:intergenic 45.0%
AATCGGGTCATTGATAGGGA+TGG - chr3_1:71907955-71907974 Msa0372990:CDS 45.0%
TGGCTGAATACTGGTGACAT+AGG - chr3_1:71907979-71907998 Msa0372990:CDS 45.0%
ATTGCTGGCCACCATTCAAT+TGG - chr3_1:71908006-71908025 Msa0372990:intron 45.0%
TTGCTGGCCACCATTCAATT+GGG - chr3_1:71908007-71908026 Msa0372990:intron 45.0%
! GGTGGTGTGATTGTTGTTGA+AGG - chr3_1:71908045-71908064 Msa0372990:intron 45.0%
GACACCATTGTGCTTTCATC+AGG - chr3_1:71908078-71908097 Msa0372990:intron 45.0%
!! AAGGCTAGGGGTGTTATGAA+TGG - chr3_1:71908858-71908877 Msa0372990:intron 45.0%
!! AGGCTAGGGGTGTTATGAAT+GGG - chr3_1:71908859-71908878 Msa0372990:intron 45.0%
! GGGGTGTTATGAATGGGAAA+CGG - chr3_1:71908865-71908884 Msa0372990:intron 45.0%
ATCACTTCCCATTATCGTGC+AGG - chr3_1:71908915-71908934 Msa0372990:intron 45.0%
CTGATGTCCTGCACGATAAT+GGG + chr3_1:71908925-71908944 None:intergenic 45.0%
CATTATCGTGCAGGACATCA+GGG - chr3_1:71908924-71908943 Msa0372990:intron 45.0%
!! AGGATTGGCCCAATCTGAAA+TGG + chr3_1:71908953-71908972 None:intergenic 45.0%
CACCCACAATGAAAGTTCGA+AGG - chr3_1:71909103-71909122 Msa0372990:intron 45.0%
! TCTATTGTGCCACTGGCATT+AGG + chr3_1:71909262-71909281 None:intergenic 45.0%
GTGATAGGAATTCCCGCCAT+TGG + chr3_1:71903122-71903141 None:intergenic 50.0%
!! GTTGATGGTGGTGGTGAAGT+TGG + chr3_1:71903204-71903223 None:intergenic 50.0%
!! TGGAGAAACGTTGATGGTGG+TGG + chr3_1:71903213-71903232 None:intergenic 50.0%
! GGTTGGAGAAACGTTGATGG+TGG + chr3_1:71903216-71903235 None:intergenic 50.0%
AGCGGTTGGAGAAACGTTGA+TGG + chr3_1:71903219-71903238 None:intergenic 50.0%
AAGACGCGAAAAGAAGCGGT+TGG + chr3_1:71903233-71903252 None:intergenic 50.0%
! AAGTTCTGGCAATGGTGGTG+TGG - chr3_1:71903638-71903657 Msa0372990:intron 50.0%
!! GTGGTGTGGCTTTAGATGAG+TGG - chr3_1:71903652-71903671 Msa0372990:intron 50.0%
GCTGAGGGGTTGAGAGTTAT+TGG - chr3_1:71904466-71904485 Msa0372990:CDS 50.0%
AAGCCAGCGACACGAGTTAT+CGG + chr3_1:71904524-71904543 None:intergenic 50.0%
!! TGAAAGTGTTGCACTAGCCG+TGG - chr3_1:71904891-71904910 Msa0372990:intron 50.0%
! ATTTTGGGCGACAAAGTCGC+AGG - chr3_1:71905061-71905080 Msa0372990:intron 50.0%
! TTTTGGGCGACAAAGTCGCA+GGG - chr3_1:71905062-71905081 Msa0372990:intron 50.0%
CAGTAGGTACAACGTCCGAT+AGG + chr3_1:71905523-71905542 None:intergenic 50.0%
GACGTTGTACCTACTGAAGC+TGG - chr3_1:71905527-71905546 Msa0372990:intron 50.0%
GCTTCATGATCCCACTACAG+AGG + chr3_1:71905933-71905952 None:intergenic 50.0%
! CTTCACCGGTTATTGCTGCT+CGG - chr3_1:71906797-71906816 Msa0372990:CDS 50.0%
TCTTCCCGATCTCTGTCTAG+AGG - chr3_1:71907290-71907309 Msa0372990:intron 50.0%
ACTGGTGAAGTTCTTCCACC+TGG - chr3_1:71907483-71907502 Msa0372990:CDS 50.0%
AGGGGCCCACAATTGATGAA+GGG - chr3_1:71907528-71907547 Msa0372990:CDS 50.0%
! GGTGACATAGGTTGGATTGC+TGG - chr3_1:71907991-71908010 Msa0372990:CDS 50.0%
TACGACTCCGCCCAATTGAA+TGG + chr3_1:71908020-71908039 None:intergenic 50.0%
ATTGGGCGGAGTCGTAATTC+TGG - chr3_1:71908024-71908043 Msa0372990:intron 50.0%
AGCTTGAAGAAGCTGCCATG+AGG - chr3_1:71908379-71908398 Msa0372990:intron 50.0%
CCTGATGTCCTGCACGATAA+TGG + chr3_1:71908926-71908945 None:intergenic 50.0%
CCATTATCGTGCAGGACATC+AGG - chr3_1:71908923-71908942 Msa0372990:intron 50.0%
GTACGAGTCTATTGTGCCAC+TGG + chr3_1:71909269-71909288 None:intergenic 50.0%
TTGGTGCGAGCGAAGAAGAG+AGG + chr3_1:71903185-71903204 None:intergenic 55.0%
TTGCCGATAACTCGTGTCGC+TGG - chr3_1:71904518-71904537 Msa0372990:intron 55.0%
!! CGCTGGCTTGTAGCAGATCA+AGG - chr3_1:71904535-71904554 Msa0372990:intron 55.0%
TGCAGCCTGCAGAGTGCAAA+AGG + chr3_1:71906600-71906619 None:intergenic 55.0%
ACTCTGCAGGCTGCAGTAAG+TGG - chr3_1:71906605-71906624 Msa0372990:intron 55.0%
AGTCGCCGAGCAGCAATAAC+CGG + chr3_1:71906805-71906824 None:intergenic 55.0%
GTTATTGCTGCTCGGCGACT+TGG - chr3_1:71906805-71906824 Msa0372990:CDS 55.0%
! GGGGTGCTCAAAGTCCCAAA+TGG - chr3_1:71906931-71906950 Msa0372990:intron 55.0%
CAGGGGCCCACAATTGATGA+AGG - chr3_1:71907527-71907546 Msa0372990:CDS 55.0%
GGGGCCCACAATTGATGAAG+GGG - chr3_1:71907529-71907548 Msa0372990:CDS 55.0%
GGGTCATTGATAGGGATGGC+TGG - chr3_1:71907959-71907978 Msa0372990:CDS 55.0%
! AGGGATGGCTGGCTGAATAC+TGG - chr3_1:71907970-71907989 Msa0372990:CDS 55.0%
CTGGCCACCATTCAATTGGG+CGG - chr3_1:71908010-71908029 Msa0372990:intron 55.0%
GACTCCGCCCAATTGAATGG+TGG + chr3_1:71908017-71908036 None:intergenic 55.0%
GCAGCTTCTTCAAGCTCTCC+CGG + chr3_1:71908375-71908394 None:intergenic 55.0%
ACCTACGGTCCTGTTTGGGG+TGG - chr3_1:71904618-71904637 Msa0372990:intron 60.0%
ACCACCCCAAACAGGACCGT+AGG + chr3_1:71904622-71904641 None:intergenic 60.0%
CTGCAGGCTGCAGTAAGTGG+TGG - chr3_1:71906608-71906627 Msa0372990:intron 60.0%
CAGGCTGCAGTAAGTGGTGG+TGG - chr3_1:71906611-71906630 Msa0372990:intron 60.0%
GGGCGGAGTCGTAATTCTGG+TGG - chr3_1:71908027-71908046 Msa0372990:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 71903024 71909428 71903024 ID=Msa0372990;Name=Msa0372990
chr3_1 mRNA 71903024 71909428 71903024 ID=Msa0372990-mRNA-1;Parent=Msa0372990;Name=Msa0372990-mRNA-1;_AED=0.33;_eAED=0.33;_QI=98|0.93|0.94|1|1|1|17|252|718
chr3_1 exon 71903024 71903368 71903024 ID=Msa0372990-mRNA-1:exon:15920;Parent=Msa0372990-mRNA-1
chr3_1 exon 71903458 71903515 71903458 ID=Msa0372990-mRNA-1:exon:15919;Parent=Msa0372990-mRNA-1
chr3_1 exon 71903759 71903904 71903759 ID=Msa0372990-mRNA-1:exon:15918;Parent=Msa0372990-mRNA-1
chr3_1 exon 71904015 71904094 71904015 ID=Msa0372990-mRNA-1:exon:15917;Parent=Msa0372990-mRNA-1
chr3_1 exon 71904353 71904512 71904353 ID=Msa0372990-mRNA-1:exon:15916;Parent=Msa0372990-mRNA-1
chr3_1 exon 71904892 71905029 71904892 ID=Msa0372990-mRNA-1:exon:15915;Parent=Msa0372990-mRNA-1
chr3_1 exon 71905618 71905698 71905618 ID=Msa0372990-mRNA-1:exon:15914;Parent=Msa0372990-mRNA-1
chr3_1 exon 71905785 71905838 71905785 ID=Msa0372990-mRNA-1:exon:15913;Parent=Msa0372990-mRNA-1
chr3_1 exon 71906089 71906247 71906089 ID=Msa0372990-mRNA-1:exon:15912;Parent=Msa0372990-mRNA-1
chr3_1 exon 71906408 71906513 71906408 ID=Msa0372990-mRNA-1:exon:15911;Parent=Msa0372990-mRNA-1
chr3_1 exon 71906614 71906681 71906614 ID=Msa0372990-mRNA-1:exon:15910;Parent=Msa0372990-mRNA-1
chr3_1 exon 71906791 71906940 71906791 ID=Msa0372990-mRNA-1:exon:15909;Parent=Msa0372990-mRNA-1
chr3_1 exon 71907113 71907228 71907113 ID=Msa0372990-mRNA-1:exon:15908;Parent=Msa0372990-mRNA-1
chr3_1 exon 71907344 71907643 71907344 ID=Msa0372990-mRNA-1:exon:15907;Parent=Msa0372990-mRNA-1
chr3_1 exon 71907896 71908010 71907896 ID=Msa0372990-mRNA-1:exon:15906;Parent=Msa0372990-mRNA-1
chr3_1 exon 71908673 71908855 71908673 ID=Msa0372990-mRNA-1:exon:15905;Parent=Msa0372990-mRNA-1
chr3_1 exon 71909181 71909428 71909181 ID=Msa0372990-mRNA-1:exon:15904;Parent=Msa0372990-mRNA-1
chr3_1 five_prime_UTR 71909331 71909428 71909331 ID=Msa0372990-mRNA-1:five_prime_utr;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71909181 71909330 71909181 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71908673 71908855 71908673 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71907896 71908010 71907896 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71907344 71907643 71907344 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71907113 71907228 71907113 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71906791 71906940 71906791 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71906614 71906681 71906614 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71906408 71906513 71906408 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71906089 71906247 71906089 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71905785 71905838 71905785 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71905618 71905698 71905618 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71904892 71905029 71904892 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71904353 71904512 71904353 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71904015 71904094 71904015 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71903759 71903904 71903759 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71903458 71903515 71903458 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 CDS 71903276 71903368 71903276 ID=Msa0372990-mRNA-1:cds;Parent=Msa0372990-mRNA-1
chr3_1 three_prime_UTR 71903024 71903275 71903024 ID=Msa0372990-mRNA-1:three_prime_utr;Parent=Msa0372990-mRNA-1
Gene Sequence

>Msa0372990

ATGGCGGGAATTCCTATCACCTCCGCTAACTACAACTATGCTTCTTCCATCCATTCACTTCCTCTCTTCTTCGCTCGCACCAACTTCACCACCACCATCAACGTTTCTCCAACCGCTTCTTTTCGCGTCTTTTGCCATACTCAATCCAAGACAAAGAAAACGGAGATAAGAAGGTTTTCCCCTTTATTAGAAAGTTCTGGCAATGGTGGTGTGGCTTTAGATGAGTGGAAAGCAGTTCCTGATATTTGGAGAACTTCTGCAGAGAAGTATGGTGATAAAGTAGCTTTGGTAGATCAATATCATGATCCTCCTTCAACTATGACATACAAACAGTTGGAGGATGCAATTTTAAACTTTGCTGAGGGGTTGAGAGTTATTGGAGTAAAACCTGATGAGAAAATTGCTCTTTTTGCCGATAACTCGTGTCGCTGGCTTGTAGCAGATCAAGGCATGATGGCAATTGGAGCAATCAATGTGGTTAGGGGTTCAAGGTCATCAATTGAAGAACTGCTGCAAATATACAACCACTCTGAAAGTGTTGCACTAGCCGTGGACAATCCTGAAATGTATAATCAGATTGCAAAACCATTTTATTTGAAGACCTCAATCAGATTTATTATTCTGCTTTGGGGAGAAAAATCAAGCCTTGTCAATGAAGCAAACAAGGAGGTGCCAATCTATACATTCATGGAAGTCATAAATTTTGGGCGACAAAGTCGCAGGGCATTGCACGCCTCCCATGATACTAGGCAACACATGTTTGAAACAATAAAATTGGATGACATTGCTACTCTTGTGTACACAAGTGGTACTACTGGAAATCCTAAAGGTGTTATGCTAACCCATCAGAATCTTTTGCATCAGATCAAACACCTATCGGACGTTGTACCTACTGAAGCTGGAGATAGATTTCTAAGTATGTTGCCTCCTTGGCATGCATATGAAAGAGCTTGCGAGTATTTCATTTTCTCACGTGGTCTTGAACATATATACACTACTGTAAGAAACTTGAAGGATGATTTGGGACGTTATAAGCCACATTTAATGGTTTCTGTTCCTTTAGTTTTTGAAACTTTGTACAGTGGGATCATGAAGCAGATATCTACAAGCTCACTTGTTAGAAAGCTTGTCGCTCTCACATTCATAAGGGTCAGCTTAGGATACATGGAGTGTAAGCGAATTTATGAGGGTAAATGTTTAACCAAGAATCAGAAATCACCTTCCTATCTCTATGCAATGTTGGATTGGCTATGGGCAAGAATTATGGCTGCAATATTATATCCAGTTCATATGCTGGCAAATAAATTGGTTTACAGTAAAATCCGTTCAACTATTGGGATATCAACGGCTGCAGTAAGTGGTGGTGGTAGCTTACCTTCTCATGTTGACAAGTTTTTTGAGGCTATTGGTTTGAATTTGCAGAATGGATATGGTTTAACAGAAACTTCACCGGTTATTGCTGCTCGGCGACTTGGTTGTGACGTAATTGGATCTGTGGGGTATCCACTTAAGCATACAGAATTCAAAGTTGTAGATTCTGAAACTGGTGAAGTTCTTCCACCTGGTTCAAAGGGAATTTTGAAAGTCAGGGGCCCACAATTGATGAAGGGGTACTACAAGAATCCTTCAGCTACAAATCGGGTCATTGATAGGGATGGCTGGCTGAATACTGGTGACATAGGTTGGATTGCTGGCCACCATTCAATTGGGCGGAGTCGTAATTCTGGTGGTGTGATTGTTGTTGAAGGTCGTGCTAAAGACACCATTGTGCTTTCATCAGGTGAAAATGTTGAACCGGGAGAGCTTGAAGAAGCTGCCATGAGGAGTAACCTCATACAACAAATTGTTGTCATTGGTCAGGATAAACGGCGTCTAGGAGCTGTAATTGTTCCTAACAAAGAAGAAGTCTTAAAGGCAGCAAAGAAATTGTCAATTATAGATTCCAATAGTTCAGATGTTAGTCAGGAAAAAGTGACCAGTCTAATATATAATGAACTAAAGACCTGGACATCAGGGTTTCCATTTCAGATTGGGCCAATCCTTCTCGTAAATGATCCCTTCACGATTGATAATGGGCTAATGACACCCACAATGAAAGTTCGAAGGGATAGAGTTATGGCTCAATACAGGGACCAGATAGAGAATCTATACAAGTAA
Protein sequence

>Msa0372990

MAGIPITSANYNYASSIHSLPLFFARTNFTTTINVSPTASFRVFCHTQSKTKKTEIRRFSPLLESSGNGGVALDEWKAVPDIWRTSAEKYGDKVALVDQYHDPPSTMTYKQLEDAILNFAEGLRVIGVKPDEKIALFADNSCRWLVADQGMMAIGAINVVRGSRSSIEELLQIYNHSESVALAVDNPEMYNQIAKPFYLKTSIRFIILLWGEKSSLVNEANKEVPIYTFMEVINFGRQSRRALHASHDTRQHMFETIKLDDIATLVYTSGTTGNPKGVMLTHQNLLHQIKHLSDVVPTEAGDRFLSMLPPWHAYERACEYFIFSRGLEHIYTTVRNLKDDLGRYKPHLMVSVPLVFETLYSGIMKQISTSSLVRKLVALTFIRVSLGYMECKRIYEGKCLTKNQKSPSYLYAMLDWLWARIMAAILYPVHMLANKLVYSKIRSTIGISTAAVSGGGSLPSHVDKFFEAIGLNLQNGYGLTETSPVIAARRLGCDVIGSVGYPLKHTEFKVVDSETGEVLPPGSKGILKVRGPQLMKGYYKNPSATNRVIDRDGWLNTGDIGWIAGHHSIGRSRNSGGVIVVEGRAKDTIVLSSGENVEPGELEEAAMRSNLIQQIVVIGQDKRRLGAVIVPNKEEVLKAAKKLSIIDSNSSDVSQEKVTSLIYNELKTWTSGFPFQIGPILLVNDPFTIDNGLMTPTMKVRRDRVMAQYRDQIENLYK*