AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1388270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388270 MtrunA17_Chr5g0401491 99.359 312 2 0 1 312 1 312 0.0 637
Msa1388270 MtrunA17_Chr1g0151581 47.205 161 84 1 66 225 50 210 2.16e-43 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388270 AT5G67370.1 67.278 327 92 3 1 312 1 327 5.12e-147 416
Msa1388270 AT5G11840.1 39.370 254 139 7 12 262 11 252 1.64e-46 158
Msa1388270 AT5G11840.3 42.079 202 105 5 12 210 11 203 1.04e-40 141
Msa1388270 AT5G11840.4 43.684 190 95 5 12 198 11 191 7.55e-40 139
Msa1388270 AT5G11840.2 39.655 174 93 5 12 182 11 175 3.33e-29 111

Find 121 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGACATTCAGTTCAGTATT+TGG 0.178645 tig0021037:+124877 Msa1388270:three_prime_UTR
GATCTTTAGTTATCTATTTC+AGG 0.204542 tig0021037:-124390 None:intergenic
ATTAAAGTTAAGGCCATAAA+AGG 0.256213 tig0021037:+121870 Msa1388270:CDS
TGTCAGCTCCTAGTTTATTA+TGG 0.285048 tig0021037:+124602 Msa1388270:three_prime_UTR
GATTGTCTTGAGGATATATC+TGG 0.307364 tig0021037:+122821 Msa1388270:CDS
TGAAAACAACCTTGCTTTGT+TGG 0.310340 tig0021037:+121687 Msa1388270:five_prime_UTR
TTCCTGGTGCTGTGGTCTAT+TGG 0.311655 tig0021037:-124900 None:intergenic
AACGAACCATGGTTGCTTCC+CGG 0.333037 tig0021037:-121801 None:intergenic
TGTTACATTTCGCAACTCTA+TGG 0.339497 tig0021037:+124300 Msa1388270:three_prime_UTR
GCTGTATTCATGGGGAGAAC+TGG 0.347057 tig0021037:+122437 Msa1388270:CDS
TTTACTTTGACTACGTTGAA+TGG 0.353446 tig0021037:-124352 None:intergenic
CTAAAGCTTGCAGCTGCAAT+TGG 0.364895 tig0021037:-122525 None:intergenic
CTGTTTATCTGCCTATATAC+TGG 0.369110 tig0021037:-124460 None:intergenic
AAATTCGCACTTACTCTAGA+AGG 0.375714 tig0021037:-122549 None:intergenic
GGAGAAACAAGTGGATCTTC+AGG 0.375718 tig0021037:+121903 Msa1388270:CDS
GCAAGTTCCATATGCATGTT+AGG 0.378055 tig0021037:+124497 Msa1388270:three_prime_UTR
TGCTTCAGCAATTTAACAAC+TGG 0.384909 tig0021037:-123832 None:intergenic
TCCTAGTTTATTATGGTAAA+GGG 0.385624 tig0021037:+124609 Msa1388270:three_prime_UTR
TTTAGGCATTTGTAAAGGTA+TGG 0.391330 tig0021037:+124702 Msa1388270:three_prime_UTR
CTCCTAGTTTATTATGGTAA+AGG 0.391688 tig0021037:+124608 Msa1388270:three_prime_UTR
ACGGGTTTCCATTAAAGTTA+AGG 0.392385 tig0021037:+121860 Msa1388270:CDS
TACCATCCACTTTCTTCATA+AGG 0.394550 tig0021037:-123166 None:intergenic
GGAGAAGGAAGAGGAGGAAA+AGG 0.396271 tig0021037:-121653 None:intergenic
GATCCTCCCATTTGCAGTAC+TGG 0.400519 tig0021037:-124214 None:intergenic
CATACCGGTCTTTGCTCAAA+AGG 0.406196 tig0021037:-121960 None:intergenic
GGGTCGTTCTTTCTTCGCCT+TGG 0.406243 tig0021037:+122465 Msa1388270:CDS
TAACTAATAGAATAATGCTT+TGG 0.406729 tig0021037:-124323 None:intergenic
AAATAAAGACTCCAGTATAT+AGG 0.407877 tig0021037:+124449 Msa1388270:three_prime_UTR
TCATGGGGAGAACTGGGTCC+AGG 0.410922 tig0021037:+122444 Msa1388270:CDS
TGCTAAAGTAAAGAACAAAA+AGG 0.411381 tig0021037:+124237 Msa1388270:exon
ACTAGCTTCCGTGCCTTGCC+TGG 0.417609 tig0021037:-124842 None:intergenic
GTGGATCTTCAGGAGGTAGC+TGG 0.417633 tig0021037:+121913 Msa1388270:CDS
TTGCTGAAGCAAACTCTAGT+TGG 0.417913 tig0021037:+123844 Msa1388270:CDS
TCTTGCAGCTGCTGCTGCTG+AGG 0.421207 tig0021037:+124133 Msa1388270:CDS
AACTGCAAGACAAACTAAAC+CGG 0.436110 tig0021037:+121782 Msa1388270:CDS
GCTGCTGCTGAGGCTGCAGA+TGG 0.438479 tig0021037:+124143 Msa1388270:CDS
CAGGAGGCCAGTACTGCAAA+TGG 0.438936 tig0021037:+124207 Msa1388270:CDS
TTCTTCGCCTTGGAGGTCTC+TGG 0.439796 tig0021037:+122475 Msa1388270:CDS
TTTATACTAGCTGCTGGAAC+AGG 0.441314 tig0021037:+122777 Msa1388270:CDS
TTGTACTTTGTGTTGACCTT+GGG 0.445992 tig0021037:-123979 None:intergenic
CCTAGCTCGTGATAGATTGT+TGG 0.448412 tig0021037:+123665 Msa1388270:CDS
TAAATATGTATAATCTTATC+CGG 0.450407 tig0021037:-124537 None:intergenic
CTAGCTCGTGATAGATTGTT+GGG 0.458803 tig0021037:+123666 Msa1388270:CDS
GGGACTTCAATTTCCAATCC+AGG 0.460451 tig0021037:-121939 None:intergenic
CAGTATATAGGCAGATAAAC+AGG 0.461166 tig0021037:+124461 Msa1388270:three_prime_UTR
GGTTTAGTTTGTCTTGCAGT+TGG 0.461505 tig0021037:-121780 None:intergenic
CTTCTGTCCTAACATGCATA+TGG 0.461570 tig0021037:-124504 None:intergenic
TCAGGAGGTAGCTGGGATCC+TGG 0.464576 tig0021037:+121921 Msa1388270:CDS
TTGGCAGTGTTCACAGTGCT+TGG 0.468253 tig0021037:+122498 Msa1388270:CDS
AGGATGGAATGCTGTATTCA+TGG 0.479665 tig0021037:+122427 Msa1388270:CDS
TAGATTGTTGGGCTCTTACA+AGG 0.485638 tig0021037:+123677 Msa1388270:CDS
AACCTATCTCTACAGTATAC+TGG 0.487242 tig0021037:-124170 None:intergenic
GAAGGAAGAGGAGGAAAAGG+AGG 0.488611 tig0021037:-121650 None:intergenic
ACTGGAGCATTGCTTGTCAC+TGG 0.490569 tig0021037:+123868 Msa1388270:CDS
TGCTGAAGCAAACTCTAGTT+GGG 0.491191 tig0021037:+123845 Msa1388270:CDS
TTAGGCATTTGTAAAGGTAT+GGG 0.498863 tig0021037:+124703 Msa1388270:three_prime_UTR
TCTTTACTTGGAGAAGGAAG+AGG 0.499084 tig0021037:-121662 None:intergenic
TCGTTCTTTCTTCGCCTTGG+AGG 0.501822 tig0021037:+122468 Msa1388270:CDS
TTCAATTCTTTACTTGGAGA+AGG 0.504464 tig0021037:-121668 None:intergenic
AAGAGAAGAATGAATCTTTG+TGG 0.504529 tig0021037:-124754 None:intergenic
GTTGTACTTTGTGTTGACCT+TGG 0.506897 tig0021037:-123980 None:intergenic
CTGTATTCATGGGGAGAACT+GGG 0.507278 tig0021037:+122438 Msa1388270:CDS
AACAAAATCATATGATGTGA+AGG 0.511103 tig0021037:+124425 Msa1388270:three_prime_UTR
GTCATTCCTTATGAAGAAAG+TGG 0.511705 tig0021037:+123160 Msa1388270:CDS
TCGTCCGCTTTCACATCTGC+AGG 0.511726 tig0021037:-124107 None:intergenic
GCCATAAAAGGTGAGATGAA+TGG 0.514026 tig0021037:+121882 Msa1388270:CDS
GGACAGAAGTCCGTGGAAGC+CGG 0.518517 tig0021037:+124518 Msa1388270:three_prime_UTR
CTGAGATTTATACTAGCTGC+TGG 0.524640 tig0021037:+122771 Msa1388270:CDS
AAATGAGTACTCATCTTTGA+AGG 0.527068 tig0021037:+122407 Msa1388270:CDS
ACTGAACTGAATGTCTCAAT+CGG 0.527821 tig0021037:-124871 None:intergenic
AAGCAAACTCTAGTTGGGAC+TGG 0.534146 tig0021037:+123850 Msa1388270:CDS
GGCCAATAGACCACAGCACC+AGG 0.535402 tig0021037:+124898 Msa1388270:three_prime_UTR
GGACATTTAGGCATTTGTAA+AGG 0.537925 tig0021037:+124697 Msa1388270:three_prime_UTR
GACCAGTATACTGTAGAGAT+AGG 0.539279 tig0021037:+124168 Msa1388270:CDS
CTGAATGTCTCAATCGGTCA+AGG 0.541047 tig0021037:-124865 None:intergenic
AGGTAGCTGGGATCCTGGAT+TGG 0.543722 tig0021037:+121926 Msa1388270:CDS
TGGATCTTCAGGAGGTAGCT+GGG 0.548745 tig0021037:+121914 Msa1388270:CDS
TTGTGTCTTTGATTGTCTTG+AGG 0.548909 tig0021037:+122811 Msa1388270:CDS
GAGTACTCATCTTTGAAGGA+TGG 0.549927 tig0021037:+122411 Msa1388270:CDS
TCCCTTTACCATAATAAACT+AGG 0.550803 tig0021037:-124610 None:intergenic
GTTGACCTTGGGAACTTGAA+CGG 0.554757 tig0021037:-123968 None:intergenic
AACTATCTCCAGGCAAGGCA+CGG 0.555303 tig0021037:+124834 Msa1388270:three_prime_UTR
TTCTTCGTTATTATAACACA+TGG 0.555929 tig0021037:-124565 None:intergenic
ATACCGGTCTTTGCTCAAAA+GGG 0.558808 tig0021037:-121959 None:intergenic
AGGAGGCCAGTACTGCAAAT+GGG 0.560894 tig0021037:+124208 Msa1388270:CDS
GAATGAAGAAAATTCTCCAC+TGG 0.565797 tig0021037:-123916 None:intergenic
CCAACAATCTATCACGAGCT+AGG 0.567433 tig0021037:-123665 None:intergenic
ATTTATCTTTGCTACACCAG+TGG 0.569868 tig0021037:+123900 Msa1388270:CDS
ATAATAACGAAGAAAACTAC+AGG 0.573134 tig0021037:+124574 Msa1388270:three_prime_UTR
TCGCCTTGGAGGTCTCTGGT+TGG 0.574053 tig0021037:+122479 Msa1388270:CDS
AATGTTGTGCAACTATCTCC+AGG 0.574675 tig0021037:+124824 Msa1388270:three_prime_UTR
TTACTTGGAGAAGGAAGAGG+AGG 0.575146 tig0021037:-121659 None:intergenic
GAAGAAAGTGGATGGTATGA+CGG 0.576103 tig0021037:+123172 Msa1388270:CDS
TCTCTTGCATAACAATTCTG+AGG 0.578025 tig0021037:+124771 Msa1388270:three_prime_UTR
TCAACACAAAGTACAACCTA+AGG 0.579328 tig0021037:+123986 Msa1388270:CDS
ATAATCTTATCCGGCTTCCA+CGG 0.583764 tig0021037:-124528 None:intergenic
GGATGGAATGCTGTATTCAT+GGG 0.587098 tig0021037:+122428 Msa1388270:CDS
CATGGGGAGAACTGGGTCCA+GGG 0.587436 tig0021037:+122445 Msa1388270:CDS
ATGAGTAAACCAACAAAGCA+AGG 0.599136 tig0021037:-121696 None:intergenic
ATCAACCGTTCAAGTTCCCA+AGG 0.607453 tig0021037:+123963 Msa1388270:CDS
TTCCTTATGAAGAAAGTGGA+TGG 0.609524 tig0021037:+123164 Msa1388270:CDS
ATGCAGGGGTGGAGTTATGT+TGG 0.613989 tig0021037:+123118 Msa1388270:intron
AGGCGAAGAAAGAACGACCC+TGG 0.620568 tig0021037:-122462 None:intergenic
ACTAAACCGGGAAGCAACCA+TGG 0.621555 tig0021037:+121795 Msa1388270:CDS
TAATGTGTACTGTAGAAAGG+AGG 0.641199 tig0021037:+124070 Msa1388270:intron
TTTGGATGATGAACGAACCA+TGG 0.644971 tig0021037:-121812 None:intergenic
ACTGCAAGACAAACTAAACC+GGG 0.646464 tig0021037:+121783 Msa1388270:CDS
ATTGCCTGCAGATGTGAAAG+CGG 0.647332 tig0021037:+124103 Msa1388270:CDS
TGTGCAACTATCTCCAGGCA+AGG 0.650202 tig0021037:+124829 Msa1388270:three_prime_UTR
ATAGATAACTAAAGATCACA+TGG 0.650379 tig0021037:+124396 Msa1388270:three_prime_UTR
ATGGTATGACGGACAGATGT+GGG 0.654790 tig0021037:+123183 Msa1388270:CDS
GAGATGAATGGAGAAACAAG+TGG 0.659434 tig0021037:+121894 Msa1388270:CDS
GTTAAGAGAGTAACCTCGGG+TGG 0.671627 tig0021037:-123211 None:intergenic
CTGCCAACCAGAGACCTCCA+AGG 0.677013 tig0021037:-122482 None:intergenic
AGGCCAGTACTGCAAATGGG+AGG 0.682389 tig0021037:+124211 Msa1388270:CDS
CATGTTAGGACAGAAGTCCG+TGG 0.685051 tig0021037:+124511 Msa1388270:three_prime_UTR
GATGGTATGACGGACAGATG+TGG 0.687282 tig0021037:+123182 Msa1388270:CDS
GATGGAATGCTGTATTCATG+GGG 0.687693 tig0021037:+122429 Msa1388270:CDS
GAAACAAGTGGATCTTCAGG+AGG 0.690118 tig0021037:+121906 Msa1388270:CDS
GATGTGGGTCAAGCCACCCG+AGG 0.694191 tig0021037:+123198 Msa1388270:CDS
GCAGCTAGTATAAATCTCAG+AGG 0.718109 tig0021037:-122768 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAATTACAAATAAT+TGG + tig0021037:121568-121587 Msa1388270:five_prime_UTR 10.0%
!! ATGAGAAAAAATCAAAATAT+TGG + tig0021037:122170-122189 Msa1388270:intron 15.0%
!!! TATAAGAAACATTTTTTAGT+GGG - tig0021037:122346-122365 None:intergenic 15.0%
!!! TTATAAGAAACATTTTTTAG+TGG - tig0021037:122347-122366 None:intergenic 15.0%
!!! GCATACATTTTTTTTTTTTT+TGG - tig0021037:122641-122660 None:intergenic 15.0%
!! ATTAAAAGTTTCAATGATAT+GGG - tig0021037:124054-124073 None:intergenic 15.0%
!! TAAATATGTATAATCTTATC+CGG - tig0021037:124540-124559 None:intergenic 15.0%
!! AAACAAAAAATTGTTCATAT+TGG - tig0021037:124675-124694 None:intergenic 15.0%
!!! ATATGAACAATTTTTTGTTT+TGG + tig0021037:124675-124694 Msa1388270:three_prime_UTR 15.0%
!!! TATGAACAATTTTTTGTTTT+GGG + tig0021037:124676-124695 Msa1388270:three_prime_UTR 15.0%
!! ATGCAATATCAAAGTTTATT+TGG - tig0021037:122046-122065 None:intergenic 20.0%
!! AAATAAACTTTGATATTGCA+TGG + tig0021037:122045-122064 Msa1388270:intron 20.0%
!!! TAAAAGAAAGTATGAGAAAA+AGG + tig0021037:122146-122165 Msa1388270:intron 20.0%
!! ATATTAGAGTATGTATTTCA+TGG + tig0021037:122203-122222 Msa1388270:intron 20.0%
!! AAGTATATGTGTATAATGAT+TGG + tig0021037:122574-122593 Msa1388270:intron 20.0%
!! AGTATATGTGTATAATGATT+GGG + tig0021037:122575-122594 Msa1388270:intron 20.0%
!!! TTTTTACTTTTAGGTAAAAG+AGG - tig0021037:123252-123271 None:intergenic 20.0%
!!! CTTACAATTTTAAAGACAAA+AGG - tig0021037:123470-123489 None:intergenic 20.0%
!!! GCTTCATTTCTTTAATTTTT+TGG + tig0021037:123608-123627 Msa1388270:intron 20.0%
!! TTAAAAGTTTCAATGATATG+GGG - tig0021037:124053-124072 None:intergenic 20.0%
!! CATTAAAAGTTTCAATGATA+TGG - tig0021037:124055-124074 None:intergenic 20.0%
!! TAACTAATAGAATAATGCTT+TGG - tig0021037:124326-124345 None:intergenic 20.0%
!!! TTATGCACACTTTTTTTCTT+AGG - tig0021037:121618-121637 None:intergenic 25.0%
!!! GTTGTTTTCAATTCTTTACT+TGG - tig0021037:121677-121696 None:intergenic 25.0%
!!! TTTTATGGCCTTAACTTTAA+TGG - tig0021037:121871-121890 None:intergenic 25.0%
! ATTAAAGTTAAGGCCATAAA+AGG + tig0021037:121870-121889 Msa1388270:CDS 25.0%
! TAAAAAGAACAGAGATAGAA+AGG + tig0021037:122100-122119 Msa1388270:intron 25.0%
! AAAAAGAACAGAGATAGAAA+GGG + tig0021037:122101-122120 Msa1388270:intron 25.0%
! TATAACATTTCATGCTAACT+TGG + tig0021037:122362-122381 Msa1388270:intron 25.0%
! ATCCCAATCATTTCATTATT+GGG + tig0021037:122873-122892 Msa1388270:intron 25.0%
! TTTATTGCATTTAACCTAGT+GGG + tig0021037:122967-122986 Msa1388270:intron 25.0%
! AACTGTGGTTAAGAAATTAA+CGG + tig0021037:123088-123107 Msa1388270:intron 25.0%
!!! GGACTTTTGTTTTTACTTTT+AGG - tig0021037:123261-123280 None:intergenic 25.0%
!!! GTCTTTAAAATTGTAAGAGA+TGG + tig0021037:123473-123492 Msa1388270:intron 25.0%
! ACTCATTAAGCTGAATAATT+AGG + tig0021037:123732-123751 Msa1388270:intron 25.0%
! TAAAAGTTTCAATGATATGG+GGG - tig0021037:124052-124071 None:intergenic 25.0%
!! TTTTAATGTGTACTGTAGAA+AGG + tig0021037:124067-124086 Msa1388270:intron 25.0%
! TGCTAAAGTAAAGAACAAAA+AGG + tig0021037:124237-124256 Msa1388270:exon 25.0%
! GATCTTTAGTTATCTATTTC+AGG - tig0021037:124393-124412 None:intergenic 25.0%
! ATAGATAACTAAAGATCACA+TGG + tig0021037:124396-124415 Msa1388270:three_prime_UTR 25.0%
! AACAAAATCATATGATGTGA+AGG + tig0021037:124425-124444 Msa1388270:three_prime_UTR 25.0%
! AAATAAAGACTCCAGTATAT+AGG + tig0021037:124449-124468 Msa1388270:three_prime_UTR 25.0%
! TTCTTCGTTATTATAACACA+TGG - tig0021037:124568-124587 None:intergenic 25.0%
! ATAATAACGAAGAAAACTAC+AGG + tig0021037:124574-124593 Msa1388270:three_prime_UTR 25.0%
! TCCTAGTTTATTATGGTAAA+GGG + tig0021037:124609-124628 Msa1388270:three_prime_UTR 25.0%
!!! TTTTTTGTTTTGGGACATTT+AGG + tig0021037:124685-124704 Msa1388270:three_prime_UTR 25.0%
TTCAATTCTTTACTTGGAGA+AGG - tig0021037:121671-121690 None:intergenic 30.0%
!!! ATTTTGAAGCTCTTGGATTT+TGG - tig0021037:121833-121852 None:intergenic 30.0%
!!! TGAGAAAATTTTGAAGCTCT+TGG - tig0021037:121840-121859 None:intergenic 30.0%
! GAGCTTCAAAATTTTCTCAA+CGG + tig0021037:121841-121860 Msa1388270:CDS 30.0%
! AGCTTCAAAATTTTCTCAAC+GGG + tig0021037:121842-121861 Msa1388270:CDS 30.0%
TTGATATTGCATGGTGTAAT+AGG + tig0021037:122054-122073 Msa1388270:intron 30.0%
AAATGAGTACTCATCTTTGA+AGG + tig0021037:122407-122426 Msa1388270:CDS 30.0%
CATCCCAATCATTTCATTAT+TGG + tig0021037:122872-122891 Msa1388270:intron 30.0%
TCCCAATCATTTCATTATTG+GGG + tig0021037:122874-122893 Msa1388270:intron 30.0%
TCCCCAATAATGAAATGATT+GGG - tig0021037:122878-122897 None:intergenic 30.0%
ATCCCCAATAATGAAATGAT+TGG - tig0021037:122879-122898 None:intergenic 30.0%
ATTTCATTATTGGGGATCAT+GGG + tig0021037:122882-122901 Msa1388270:intron 30.0%
CTTTATTGCATTTAACCTAG+TGG + tig0021037:122966-122985 Msa1388270:intron 30.0%
TGTTCACAAGTAAAAAACTG+TGG + tig0021037:123073-123092 Msa1388270:intron 30.0%
ACTGTGGTTAAGAAATTAAC+GGG + tig0021037:123089-123108 Msa1388270:intron 30.0%
GTAAATCTACACCTTGAATA+TGG - tig0021037:123309-123328 None:intergenic 30.0%
TATTCAAGGTGTAGATTTAC+TGG + tig0021037:123309-123328 Msa1388270:intron 30.0%
ATTCAAGGTGTAGATTTACT+GGG + tig0021037:123310-123329 Msa1388270:intron 30.0%
TACTCGACAAAATCAATTAC+TGG + tig0021037:123354-123373 Msa1388270:intron 30.0%
TTAGATAAAGACAAGACCAT+TGG + tig0021037:123382-123401 Msa1388270:intron 30.0%
AACCTATTGTTTATTCTCTC+TGG - tig0021037:123443-123462 None:intergenic 30.0%
GAGAGAATAAACAATAGGTT+AGG + tig0021037:123443-123462 Msa1388270:intron 30.0%
! ATTTAACAACTGGTTTAACC+TGG - tig0021037:123825-123844 None:intergenic 30.0%
!! GGTTGATTTATTTTCTTCTG+TGG - tig0021037:123950-123969 None:intergenic 30.0%
!!! ATCTTGTTTTTCCTTACCTT+AGG - tig0021037:124005-124024 None:intergenic 30.0%
TTTACTTTGACTACGTTGAA+TGG - tig0021037:124355-124374 None:intergenic 30.0%
CTCCTAGTTTATTATGGTAA+AGG + tig0021037:124608-124627 Msa1388270:three_prime_UTR 30.0%
TCCCTTTACCATAATAAACT+AGG - tig0021037:124613-124632 None:intergenic 30.0%
TTTAGGCATTTGTAAAGGTA+TGG + tig0021037:124702-124721 Msa1388270:three_prime_UTR 30.0%
! TTAGGCATTTGTAAAGGTAT+GGG + tig0021037:124703-124722 Msa1388270:three_prime_UTR 30.0%
AAGAGAAGAATGAATCTTTG+TGG - tig0021037:124757-124776 None:intergenic 30.0%
! AATTCATCTTTTGATCTTCC+TGG - tig0021037:124919-124938 None:intergenic 30.0%
TGAAAACAACCTTGCTTTGT+TGG + tig0021037:121687-121706 Msa1388270:five_prime_UTR 35.0%
ATGAGTAAACCAACAAAGCA+AGG - tig0021037:121699-121718 None:intergenic 35.0%
AACTGCAAGACAAACTAAAC+CGG + tig0021037:121782-121801 Msa1388270:CDS 35.0%
ACGGGTTTCCATTAAAGTTA+AGG + tig0021037:121860-121879 Msa1388270:CDS 35.0%
! TCCATTCATCTCACCTTTTA+TGG - tig0021037:121886-121905 None:intergenic 35.0%
GTAGTTGTCTACATACATAC+CGG - tig0021037:121978-121997 None:intergenic 35.0%
GTGTAATAGGATATTCCCTT+TGG + tig0021037:122067-122086 Msa1388270:intron 35.0%
! TTTTAACCTCTCAGTCCAAA+GGG - tig0021037:122085-122104 None:intergenic 35.0%
! TTTTTAACCTCTCAGTCCAA+AGG - tig0021037:122086-122105 None:intergenic 35.0%
AGAAAGGGAGGATAAAAATG+AGG + tig0021037:122116-122135 Msa1388270:intron 35.0%
CACACACATACAAACTGAAA+CGG + tig0021037:122276-122295 Msa1388270:intron 35.0%
TGCTAACTTGGAATATGTCA+TGG + tig0021037:122374-122393 Msa1388270:intron 35.0%
GGAATATGTCATGGTCTAAT+AGG + tig0021037:122383-122402 Msa1388270:intron 35.0%
AAATTCGCACTTACTCTAGA+AGG - tig0021037:122552-122571 None:intergenic 35.0%
TTGTGTCTTTGATTGTCTTG+AGG + tig0021037:122811-122830 Msa1388270:CDS 35.0%
GATTGTCTTGAGGATATATC+TGG + tig0021037:122821-122840 Msa1388270:CDS 35.0%
CATTTCATTATTGGGGATCA+TGG + tig0021037:122881-122900 Msa1388270:intron 35.0%
TTTCATTATTGGGGATCATG+GGG + tig0021037:122883-122902 Msa1388270:intron 35.0%
GTCATTCCTTATGAAGAAAG+TGG + tig0021037:123160-123179 Msa1388270:CDS 35.0%
TTCCTTATGAAGAAAGTGGA+TGG + tig0021037:123164-123183 Msa1388270:CDS 35.0%
TACCATCCACTTTCTTCATA+AGG - tig0021037:123169-123188 None:intergenic 35.0%
AAAGACAAGACCATTGGTAA+AGG + tig0021037:123388-123407 Msa1388270:intron 35.0%
!! CTCAAATTAGCCTTTACCAA+TGG - tig0021037:123401-123420 None:intergenic 35.0%
GTCCAGAGAGAATAAACAAT+AGG + tig0021037:123438-123457 Msa1388270:intron 35.0%
GCAAGCAGTCTATTCAAAAT+TGG + tig0021037:123510-123529 Msa1388270:intron 35.0%
TAGGATCTGCAAAGAGAAAT+AGG - tig0021037:123649-123668 None:intergenic 35.0%
AAGCTGAATAATTAGGATGC+AGG + tig0021037:123739-123758 Msa1388270:intron 35.0%
AGCTGAATAATTAGGATGCA+GGG + tig0021037:123740-123759 Msa1388270:intron 35.0%
TGCTTCAGCAATTTAACAAC+TGG - tig0021037:123835-123854 None:intergenic 35.0%
ATTTATCTTTGCTACACCAG+TGG + tig0021037:123900-123919 Msa1388270:CDS 35.0%
GAATGAAGAAAATTCTCCAC+TGG - tig0021037:123919-123938 None:intergenic 35.0%
! TTGTACTTTGTGTTGACCTT+GGG - tig0021037:123982-124001 None:intergenic 35.0%
TCAACACAAAGTACAACCTA+AGG + tig0021037:123986-124005 Msa1388270:CDS 35.0%
ACAAAGTACAACCTAAGGTA+AGG + tig0021037:123991-124010 Msa1388270:intron 35.0%
CAAGATCCTACAATATCTTC+AGG + tig0021037:124019-124038 Msa1388270:intron 35.0%
AGTACTCCTGAAGATATTGT+AGG - tig0021037:124028-124047 None:intergenic 35.0%
TAATGTGTACTGTAGAAAGG+AGG + tig0021037:124070-124089 Msa1388270:intron 35.0%
AACCTATCTCTACAGTATAC+TGG - tig0021037:124173-124192 None:intergenic 35.0%
TGTTACATTTCGCAACTCTA+TGG + tig0021037:124300-124319 Msa1388270:three_prime_UTR 35.0%
CTGTTTATCTGCCTATATAC+TGG - tig0021037:124463-124482 None:intergenic 35.0%
CAGTATATAGGCAGATAAAC+AGG + tig0021037:124461-124480 Msa1388270:three_prime_UTR 35.0%
TGTCAGCTCCTAGTTTATTA+TGG + tig0021037:124602-124621 Msa1388270:three_prime_UTR 35.0%
GGACATTTAGGCATTTGTAA+AGG + tig0021037:124697-124716 Msa1388270:three_prime_UTR 35.0%
TCTCTTGCATAACAATTCTG+AGG + tig0021037:124771-124790 Msa1388270:three_prime_UTR 35.0%
ACTGAACTGAATGTCTCAAT+CGG - tig0021037:124874-124893 None:intergenic 35.0%
GAGACATTCAGTTCAGTATT+TGG + tig0021037:124877-124896 Msa1388270:three_prime_UTR 35.0%
TCTTTACTTGGAGAAGGAAG+AGG - tig0021037:121665-121684 None:intergenic 40.0%
!! GGTTTAGTTTGTCTTGCAGT+TGG - tig0021037:121783-121802 None:intergenic 40.0%
ACTGCAAGACAAACTAAACC+GGG + tig0021037:121783-121802 Msa1388270:CDS 40.0%
TTTGGATGATGAACGAACCA+TGG - tig0021037:121815-121834 None:intergenic 40.0%
GCCATAAAAGGTGAGATGAA+TGG + tig0021037:121882-121901 Msa1388270:CDS 40.0%
GAGATGAATGGAGAAACAAG+TGG + tig0021037:121894-121913 Msa1388270:CDS 40.0%
ATACCGGTCTTTGCTCAAAA+GGG - tig0021037:121962-121981 None:intergenic 40.0%
AAGAACAGAGATAGAAAGGG+AGG + tig0021037:122104-122123 Msa1388270:intron 40.0%
AAGGGAGGATAAAAATGAGG+AGG + tig0021037:122119-122138 Msa1388270:intron 40.0%
CTAACTGTCATGCTTTCTGA+TGG - tig0021037:122239-122258 None:intergenic 40.0%
TCAGTTTGTATGTGTGTGCA+GGG - tig0021037:122274-122293 None:intergenic 40.0%
TTCAGTTTGTATGTGTGTGC+AGG - tig0021037:122275-122294 None:intergenic 40.0%
! GAGTACTCATCTTTGAAGGA+TGG + tig0021037:122411-122430 Msa1388270:CDS 40.0%
AGGATGGAATGCTGTATTCA+TGG + tig0021037:122427-122446 Msa1388270:CDS 40.0%
GGATGGAATGCTGTATTCAT+GGG + tig0021037:122428-122447 Msa1388270:CDS 40.0%
GATGGAATGCTGTATTCATG+GGG + tig0021037:122429-122448 Msa1388270:CDS 40.0%
! CTGTGTTGATGTTACCTTAC+AGG + tig0021037:122743-122762 Msa1388270:intron 40.0%
AAATCTCAGAGGTTCCTGTA+AGG - tig0021037:122760-122779 None:intergenic 40.0%
GCAGCTAGTATAAATCTCAG+AGG - tig0021037:122771-122790 None:intergenic 40.0%
CTGAGATTTATACTAGCTGC+TGG + tig0021037:122771-122790 Msa1388270:CDS 40.0%
TTTATACTAGCTGCTGGAAC+AGG + tig0021037:122777-122796 Msa1388270:CDS 40.0%
GGGATGTGAACATGAAAAAG+AGG - tig0021037:122858-122877 None:intergenic 40.0%
TCTATGTTGTTGCCAGAATG+TGG + tig0021037:123015-123034 Msa1388270:intron 40.0%
AGACATTAGACACCACATTC+TGG - tig0021037:123030-123049 None:intergenic 40.0%
AATTAACGGGATCACAATGC+AGG + tig0021037:123102-123121 Msa1388270:intron 40.0%
ATTAACGGGATCACAATGCA+GGG + tig0021037:123103-123122 Msa1388270:intron 40.0%
GAAGAAAGTGGATGGTATGA+CGG + tig0021037:123172-123191 Msa1388270:CDS 40.0%
AGAGTTAAGAGAGTAACCTC+GGG - tig0021037:123217-123236 None:intergenic 40.0%
GAGAGTTAAGAGAGTAACCT+CGG - tig0021037:123218-123237 None:intergenic 40.0%
TTTACTGGGACATAGCAAGT+AGG + tig0021037:123324-123343 Msa1388270:intron 40.0%
CTAGCTCGTGATAGATTGTT+GGG + tig0021037:123666-123685 Msa1388270:CDS 40.0%
TAGATTGTTGGGCTCTTACA+AGG + tig0021037:123677-123696 Msa1388270:CDS 40.0%
CACATATATTCCTTGTCTCC+AGG + tig0021037:123804-123823 Msa1388270:intron 40.0%
TTGCTGAAGCAAACTCTAGT+TGG + tig0021037:123844-123863 Msa1388270:CDS 40.0%
TGCTGAAGCAAACTCTAGTT+GGG + tig0021037:123845-123864 Msa1388270:CDS 40.0%
! GTTGTACTTTGTGTTGACCT+TGG - tig0021037:123983-124002 None:intergenic 40.0%
GACCAGTATACTGTAGAGAT+AGG + tig0021037:124168-124187 Msa1388270:CDS 40.0%
!! AGGTTTTATCGAGCATTAGC+AGG + tig0021037:124188-124207 Msa1388270:CDS 40.0%
! TTTTATCGAGCATTAGCAGG+AGG + tig0021037:124191-124210 Msa1388270:CDS 40.0%
GCAAGTTCCATATGCATGTT+AGG + tig0021037:124497-124516 Msa1388270:three_prime_UTR 40.0%
CTTCTGTCCTAACATGCATA+TGG - tig0021037:124507-124526 None:intergenic 40.0%
ATAATCTTATCCGGCTTCCA+CGG - tig0021037:124531-124550 None:intergenic 40.0%
AATGTTGTGCAACTATCTCC+AGG + tig0021037:124824-124843 Msa1388270:three_prime_UTR 40.0%
TTACTTGGAGAAGGAAGAGG+AGG - tig0021037:121662-121681 None:intergenic 45.0%
GGAGAAACAAGTGGATCTTC+AGG + tig0021037:121903-121922 Msa1388270:CDS 45.0%
GAAACAAGTGGATCTTCAGG+AGG + tig0021037:121906-121925 Msa1388270:CDS 45.0%
GGGACTTCAATTTCCAATCC+AGG - tig0021037:121942-121961 None:intergenic 45.0%
! AGTCCCTTTTGAGCAAAGAC+CGG + tig0021037:121956-121975 Msa1388270:CDS 45.0%
CATACCGGTCTTTGCTCAAA+AGG - tig0021037:121963-121982 None:intergenic 45.0%
GATATTCCCTTTGGACTGAG+AGG + tig0021037:122076-122095 Msa1388270:intron 45.0%
TGTCATGCTTTCTGATGGCT+TGG - tig0021037:122234-122253 None:intergenic 45.0%
CTGTATTCATGGGGAGAACT+GGG + tig0021037:122438-122457 Msa1388270:CDS 45.0%
CTAAAGCTTGCAGCTGCAAT+TGG - tig0021037:122528-122547 None:intergenic 45.0%
GAGTGTTCGTGACTACAGAA+GGG - tig0021037:122997-123016 None:intergenic 45.0%
! AGAGTGTTCGTGACTACAGA+AGG - tig0021037:122998-123017 None:intergenic 45.0%
TTAACGGGATCACAATGCAG+GGG + tig0021037:123104-123123 Msa1388270:intron 45.0%
!! ATGGTATGACGGACAGATGT+GGG + tig0021037:123183-123202 Msa1388270:CDS 45.0%
!! CCTTGAATATGGTTTTGCGC+AGG - tig0021037:123298-123317 None:intergenic 45.0%
CCTGCGCAAAACCATATTCA+AGG + tig0021037:123295-123314 Msa1388270:intron 45.0%
CCAACAATCTATCACGAGCT+AGG - tig0021037:123668-123687 None:intergenic 45.0%
CCTAGCTCGTGATAGATTGT+TGG + tig0021037:123665-123684 Msa1388270:CDS 45.0%
! ACTGGTTTAACCTGGAGACA+AGG - tig0021037:123817-123836 None:intergenic 45.0%
AAGCAAACTCTAGTTGGGAC+TGG + tig0021037:123850-123869 Msa1388270:CDS 45.0%
! ATCAACCGTTCAAGTTCCCA+AGG + tig0021037:123963-123982 Msa1388270:CDS 45.0%
GTTGACCTTGGGAACTTGAA+CGG - tig0021037:123971-123990 None:intergenic 45.0%
ATTGCCTGCAGATGTGAAAG+CGG + tig0021037:124103-124122 Msa1388270:CDS 45.0%
CTGAATGTCTCAATCGGTCA+AGG - tig0021037:124868-124887 None:intergenic 45.0%
!! TTTTGATCTTCCTGGTGCTG+TGG - tig0021037:124911-124930 None:intergenic 45.0%
GAAGGAAGAGGAGGAAAAGG+AGG - tig0021037:121653-121672 None:intergenic 50.0%
GGAGAAGGAAGAGGAGGAAA+AGG - tig0021037:121656-121675 None:intergenic 50.0%
ACTAAACCGGGAAGCAACCA+TGG + tig0021037:121795-121814 Msa1388270:CDS 50.0%
AACGAACCATGGTTGCTTCC+CGG - tig0021037:121804-121823 None:intergenic 50.0%
TGGATCTTCAGGAGGTAGCT+GGG + tig0021037:121914-121933 Msa1388270:CDS 50.0%
GCTGTATTCATGGGGAGAAC+TGG + tig0021037:122437-122456 Msa1388270:CDS 50.0%
TCGTTCTTTCTTCGCCTTGG+AGG + tig0021037:122468-122487 Msa1388270:CDS 50.0%
TTGGCAGTGTTCACAGTGCT+TGG + tig0021037:122498-122517 Msa1388270:CDS 50.0%
TACAGAAGGGAGTTCCCACT+AGG - tig0021037:122984-123003 None:intergenic 50.0%
ATGCAGGGGTGGAGTTATGT+TGG + tig0021037:123118-123137 Msa1388270:intron 50.0%
!! GATGGTATGACGGACAGATG+TGG + tig0021037:123182-123201 Msa1388270:CDS 50.0%
GTTAAGAGAGTAACCTCGGG+TGG - tig0021037:123214-123233 None:intergenic 50.0%
!! ACTGGAGCATTGCTTGTCAC+TGG + tig0021037:123868-123887 Msa1388270:CDS 50.0%
AGGAGGCCAGTACTGCAAAT+GGG + tig0021037:124208-124227 Msa1388270:CDS 50.0%
GATCCTCCCATTTGCAGTAC+TGG - tig0021037:124217-124236 None:intergenic 50.0%
CATGTTAGGACAGAAGTCCG+TGG + tig0021037:124511-124530 Msa1388270:three_prime_UTR 50.0%
TGTGCAACTATCTCCAGGCA+AGG + tig0021037:124829-124848 Msa1388270:three_prime_UTR 50.0%
AACTATCTCCAGGCAAGGCA+CGG + tig0021037:124834-124853 Msa1388270:three_prime_UTR 50.0%
!! TTCCTGGTGCTGTGGTCTAT+TGG - tig0021037:124903-124922 None:intergenic 50.0%
GTGGATCTTCAGGAGGTAGC+TGG + tig0021037:121913-121932 Msa1388270:CDS 55.0%
AGGTAGCTGGGATCCTGGAT+TGG + tig0021037:121926-121945 Msa1388270:CDS 55.0%
AGGCGAAGAAAGAACGACCC+TGG - tig0021037:122465-122484 None:intergenic 55.0%
GGGTCGTTCTTTCTTCGCCT+TGG + tig0021037:122465-122484 Msa1388270:CDS 55.0%
TTCTTCGCCTTGGAGGTCTC+TGG + tig0021037:122475-122494 Msa1388270:CDS 55.0%
GCGCAGGTGAAGTCTTCAGA+GGG - tig0021037:123282-123301 None:intergenic 55.0%
TGCGCAGGTGAAGTCTTCAG+AGG - tig0021037:123283-123302 None:intergenic 55.0%
TCGTCCGCTTTCACATCTGC+AGG - tig0021037:124110-124129 None:intergenic 55.0%
CAGGAGGCCAGTACTGCAAA+TGG + tig0021037:124207-124226 Msa1388270:CDS 55.0%
AGGCCAGTACTGCAAATGGG+AGG + tig0021037:124211-124230 Msa1388270:CDS 55.0%
TCAGGAGGTAGCTGGGATCC+TGG + tig0021037:121921-121940 Msa1388270:CDS 60.0%
TCATGGGGAGAACTGGGTCC+AGG + tig0021037:122444-122463 Msa1388270:CDS 60.0%
CATGGGGAGAACTGGGTCCA+GGG + tig0021037:122445-122464 Msa1388270:CDS 60.0%
TCGCCTTGGAGGTCTCTGGT+TGG + tig0021037:122479-122498 Msa1388270:CDS 60.0%
CTGCCAACCAGAGACCTCCA+AGG - tig0021037:122485-122504 None:intergenic 60.0%
TGGGGATCATGGGGTGAGCA+AGG + tig0021037:122892-122911 Msa1388270:intron 60.0%
ACGGGATCACAATGCAGGGG+TGG + tig0021037:123107-123126 Msa1388270:intron 60.0%
TCTTGCAGCTGCTGCTGCTG+AGG + tig0021037:124133-124152 Msa1388270:CDS 60.0%
GGACAGAAGTCCGTGGAAGC+CGG + tig0021037:124518-124537 Msa1388270:three_prime_UTR 60.0%
! ACTAGCTTCCGTGCCTTGCC+TGG - tig0021037:124845-124864 None:intergenic 60.0%
GGCCAATAGACCACAGCACC+AGG + tig0021037:124898-124917 Msa1388270:three_prime_UTR 60.0%
GATGTGGGTCAAGCCACCCG+AGG + tig0021037:123198-123217 Msa1388270:CDS 65.0%
GCTGCTGCTGAGGCTGCAGA+TGG + tig0021037:124143-124162 Msa1388270:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0021037 gene 121560 124942 121560 ID=Msa1388270;Name=Msa1388270
tig0021037 mRNA 121560 124942 121560 ID=Msa1388270-mRNA-1;Parent=Msa1388270;Name=Msa1388270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=187|1|1|1|1|1|7|695|312
tig0021037 exon 121560 121977 121560 ID=Msa1388270-mRNA-1:exon:11026;Parent=Msa1388270-mRNA-1
tig0021037 exon 122405 122557 122405 ID=Msa1388270-mRNA-1:exon:11027;Parent=Msa1388270-mRNA-1
tig0021037 exon 122765 122842 122765 ID=Msa1388270-mRNA-1:exon:11028;Parent=Msa1388270-mRNA-1
tig0021037 exon 123124 123219 123124 ID=Msa1388270-mRNA-1:exon:11029;Parent=Msa1388270-mRNA-1
tig0021037 exon 123663 123698 123663 ID=Msa1388270-mRNA-1:exon:11030;Parent=Msa1388270-mRNA-1
tig0021037 exon 123826 124007 123826 ID=Msa1388270-mRNA-1:exon:11031;Parent=Msa1388270-mRNA-1
tig0021037 exon 124085 124942 124085 ID=Msa1388270-mRNA-1:exon:11032;Parent=Msa1388270-mRNA-1
tig0021037 five_prime_UTR 121560 121746 121560 ID=Msa1388270-mRNA-1:five_prime_utr;Parent=Msa1388270-mRNA-1
tig0021037 CDS 121747 121977 121747 ID=Msa1388270-mRNA-1:cds;Parent=Msa1388270-mRNA-1
tig0021037 CDS 122405 122557 122405 ID=Msa1388270-mRNA-1:cds;Parent=Msa1388270-mRNA-1
tig0021037 CDS 122765 122842 122765 ID=Msa1388270-mRNA-1:cds;Parent=Msa1388270-mRNA-1
tig0021037 CDS 123124 123219 123124 ID=Msa1388270-mRNA-1:cds;Parent=Msa1388270-mRNA-1
tig0021037 CDS 123663 123698 123663 ID=Msa1388270-mRNA-1:cds;Parent=Msa1388270-mRNA-1
tig0021037 CDS 123826 124007 123826 ID=Msa1388270-mRNA-1:cds;Parent=Msa1388270-mRNA-1
tig0021037 CDS 124085 124247 124085 ID=Msa1388270-mRNA-1:cds;Parent=Msa1388270-mRNA-1
tig0021037 three_prime_UTR 124248 124942 124248 ID=Msa1388270-mRNA-1:three_prime_utr;Parent=Msa1388270-mRNA-1
Gene Sequence

>Msa1388270

ATGATTAGACTAAATTTTCACTGTTCTCTAATTCCAACTGCAAGACAAACTAAACCGGGAAGCAACCATGGTTCGTTCATCATCCAAAATCCAAGAGCTTCAAAATTTTCTCAACGGGTTTCCATTAAAGTTAAGGCCATAAAAGGTGAGATGAATGGAGAAACAAGTGGATCTTCAGGAGGTAGCTGGGATCCTGGATTGGAAATTGAAGTCCCTTTTGAGCAAAGACCGGTAAATGAGTACTCATCTTTGAAGGATGGAATGCTGTATTCATGGGGAGAACTGGGTCCAGGGTCGTTCTTTCTTCGCCTTGGAGGTCTCTGGTTGGCAGTGTTCACAGTGCTTGGAGCACCAATTGCAGCTGCAAGCTTTAGTCCTTCTAGAGAACCTCTGAGATTTATACTAGCTGCTGGAACAGGAACACTCTTCATTGTGTCTTTGATTGTCTTGAGGATATATCTGGGGTGGAGTTATGTTGGTGATAGACTTCTTTCTGCAGTCATTCCTTATGAAGAAAGTGGATGGTATGACGGACAGATGTGGGTCAAGCCACCCGAGATCCTAGCTCGTGATAGATTGTTGGGCTCTTACAAGGTTAAACCAGTTGTTAAATTGCTGAAGCAAACTCTAGTTGGGACTGGAGCATTGCTTGTCACTGGAGTTATGCTATTTATCTTTGCTACACCAGTGGAGAATTTTCTTCATTCTACATTTACCACAGAAGAAAATAAATCAACCGTTCAAGTTCCCAAGGTCAACACAAAGTACAACCTAAGAAAGGAGGAGTTGCTTAAATTGCCTGCAGATGTGAAAGCGGACGACAATCTTGCAGCTGCTGCTGCTGAGGCTGCAGATGGACGACCAGTATACTGTAGAGATAGGTTTTATCGAGCATTAGCAGGAGGCCAGTACTGCAAATGGGAGGATCTGCTAAAGTAA

Protein sequence

>Msa1388270

MIRLNFHCSLIPTARQTKPGSNHGSFIIQNPRASKFSQRVSIKVKAIKGEMNGETSGSSGGSWDPGLEIEVPFEQRPVNEYSSLKDGMLYSWGELGPGSFFLRLGGLWLAVFTVLGAPIAAASFSPSREPLRFILAAGTGTLFIVSLIVLRIYLGWSYVGDRLLSAVIPYEESGWYDGQMWVKPPEILARDRLLGSYKVKPVVKLLKQTLVGTGALLVTGVMLFIFATPVENFLHSTFTTEENKSTVQVPKVNTKYNLRKEELLKLPADVKADDNLAAAAAEAADGRPVYCRDRFYRALAGGQYCKWEDLLK*