AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389270 MtrunA17_Chr4g0042341 94.845 97 5 0 14 110 741 837 4.20e-58 191
Msa0389270 MtrunA17_Chr4g0042361 83.000 100 14 1 14 110 757 856 6.04e-50 168
Msa0389270 MtrunA17_Chr4g0042431 57.843 102 38 2 14 110 49 150 4.08e-35 117
Msa0389270 MtrunA17_Chr4g0042351 60.784 102 35 2 14 110 671 772 1.26e-32 119
Msa0389270 MtrunA17_Chr8g0361441 57.426 101 39 1 14 110 724 824 1.29e-32 119
Msa0389270 MtrunA17_Chr4g0042401 55.652 115 43 3 4 110 709 823 1.17e-30 114
Msa0389270 MtrunA17_Chr4g0042391 57.843 102 38 2 14 110 671 772 1.45e-30 113
Msa0389270 MtrunA17_Chr4g0042441 58.252 103 37 2 14 110 718 820 1.99e-30 113
Msa0389270 MtrunA17_Chr4g0042381 56.863 102 39 2 14 110 671 772 5.53e-30 112
Msa0389270 MtrunA17_Chr3g0092301 50.000 100 47 1 14 110 148 247 2.06e-28 103
Msa0389270 MtrunA17_Chr2g0280701 47.475 99 50 2 14 110 718 816 2.28e-25 99.0
Msa0389270 MtrunA17_Chr3g0078531 47.222 108 52 2 4 110 739 842 3.51e-25 98.6
Msa0389270 MtrunA17_Chr3g0093161 49.505 101 47 1 14 110 715 815 4.97e-25 97.8
Msa0389270 MtrunA17_Chr5g0422921 50.495 101 46 1 14 110 716 816 1.06e-24 97.1
Msa0389270 MtrunA17_Chr5g0428101 49.485 97 46 1 14 110 719 812 6.03e-24 94.7
Msa0389270 MtrunA17_Chr8g0361341 48.454 97 47 2 14 110 56 149 6.28e-24 89.4
Msa0389270 MtrunA17_Chr3g0078541 50.000 98 48 1 14 110 748 845 7.06e-24 94.7
Msa0389270 MtrunA17_Chr3g0078551 50.495 101 46 2 14 110 742 842 2.20e-23 93.2
Msa0389270 MtrunA17_Chr3g0078521 48.980 98 49 1 14 110 737 834 2.94e-23 92.8
Msa0389270 MtrunA17_Chr2g0280711 50.000 106 45 3 13 110 747 852 7.48e-23 91.7
Msa0389270 MtrunA17_Chr2g0280691 48.980 98 49 1 14 110 743 840 6.91e-22 89.0
Msa0389270 MtrunA17_Chr8g0361251 52.174 92 41 2 14 104 724 813 9.23e-22 88.6
Msa0389270 MtrunA17_Chr2g0318811 41.667 108 57 2 5 110 712 815 1.24e-21 88.2
Msa0389270 MtrunA17_Chr8g0354331 44.231 104 53 3 9 107 313 416 1.42e-21 87.8
Msa0389270 MtrunA17_Chr6g0453561 46.602 103 49 3 14 110 85 187 1.61e-21 84.0
Msa0389270 MtrunA17_Chr2g0318841 40.000 110 60 2 3 110 711 816 2.07e-21 87.8
Msa0389270 MtrunA17_Chr1g0206351 53.247 77 35 1 14 89 571 647 5.58e-21 86.3
Msa0389270 MtrunA17_Chr8g0354281 46.602 103 51 3 12 110 551 653 6.84e-21 86.3
Msa0389270 MtrunA17_Chr2g0318831 40.741 108 58 2 5 110 714 817 7.38e-21 86.3
Msa0389270 MtrunA17_Chr3g0082941 45.455 88 46 2 12 97 389 476 7.82e-21 85.9
Msa0389270 MtrunA17_Chr5g0428111 45.000 100 52 1 14 110 721 820 1.22e-20 85.5
Msa0389270 MtrunA17_Chr4g0048631 47.573 103 48 3 14 110 750 852 1.39e-20 85.5
Msa0389270 MtrunA17_Chr8g0361281 45.370 108 52 3 4 110 725 826 3.57e-20 84.0
Msa0389270 MtrunA17_Chr3g0081011 42.574 101 53 3 12 107 555 655 5.37e-20 83.6
Msa0389270 MtrunA17_Chr8g0361431 50.000 70 35 0 14 83 702 771 1.16e-19 82.8
Msa0389270 MtrunA17_Chr8g0354391 40.426 94 55 1 12 104 150 243 3.07e-19 79.7
Msa0389270 MtrunA17_Chr8g0358061 44.595 74 40 1 14 86 274 347 3.57e-19 80.9
Msa0389270 MtrunA17_Chr8g0354351 48.352 91 46 1 12 101 549 639 4.41e-19 80.9
Msa0389270 MtrunA17_Chr8g0358141 45.946 74 39 1 14 86 296 369 4.92e-19 80.5
Msa0389270 MtrunA17_Chr8g0357991 47.297 74 38 1 14 86 703 776 5.79e-19 80.9
Msa0389270 MtrunA17_Chr3g0084411 46.316 95 50 1 14 108 717 810 6.77e-19 80.5
Msa0389270 MtrunA17_Chr8g0357881 45.946 74 39 1 14 86 694 767 7.66e-19 80.5
Msa0389270 MtrunA17_Chr8g0354421 43.396 106 51 3 12 110 579 682 9.37e-19 80.1
Msa0389270 MtrunA17_Chr5g0394011 54.167 72 30 2 14 82 569 640 1.10e-18 79.7
Msa0389270 MtrunA17_Chr8g0358101 45.946 74 39 1 14 86 682 755 1.28e-18 79.7
Msa0389270 MtrunA17_Chr3g0084491 48.039 102 46 3 14 110 724 823 1.32e-18 79.7
Msa0389270 MtrunA17_Chr8g0354291 42.308 104 55 2 12 110 1 104 1.40e-18 74.3
Msa0389270 MtrunA17_Chr8g0358071 38.298 94 56 2 14 105 694 787 1.45e-18 79.7
Msa0389270 MtrunA17_Chr8g0354441 47.059 102 47 4 12 106 566 667 1.64e-18 79.3
Msa0389270 MtrunA17_Chr8g0358081 45.946 74 39 1 14 86 679 752 1.87e-18 79.3
Msa0389270 MtrunA17_Chr2g0280761 42.574 101 53 3 14 110 49 148 1.96e-18 75.1
Msa0389270 MtrunA17_Chr8g0361261 43.478 92 47 1 14 100 755 846 2.22e-18 79.0
Msa0389270 MtrunA17_Chr8g0357961 45.946 74 39 1 14 86 702 775 2.23e-18 79.0
Msa0389270 MtrunA17_Chr2g0280791 42.574 101 53 3 14 110 738 837 2.28e-18 79.0
Msa0389270 MtrunA17_Chr2g0280801 42.574 101 53 3 14 110 744 843 2.49e-18 79.0
Msa0389270 MtrunA17_Chr7g0236231 42.157 102 54 3 14 110 736 837 2.83e-18 78.6
Msa0389270 MtrunA17_Chr3g0084421 51.852 81 37 1 5 83 669 749 2.84e-18 78.6
Msa0389270 MtrunA17_Chr3g0081071 52.857 70 32 1 14 82 147 216 4.27e-18 76.6
Msa0389270 MtrunA17_Chr8g0358121 44.595 74 40 1 14 86 680 753 4.85e-18 78.2
Msa0389270 MtrunA17_Chr8g0361301 43.478 92 47 1 14 100 724 815 5.36e-18 77.8
Msa0389270 MtrunA17_Chr8g0357921 42.254 71 40 1 14 83 49 119 5.75e-18 73.9
Msa0389270 MtrunA17_Chr8g0354431 43.925 107 49 4 12 110 558 661 6.65e-18 77.8
Msa0389270 MtrunA17_Chr2g0280831 42.000 100 53 3 14 109 312 410 6.93e-18 77.4
Msa0389270 MtrunA17_Chr8g0357981 43.243 74 41 1 14 86 523 596 7.43e-18 77.4
Msa0389270 MtrunA17_Chr3g0084431 52.857 70 33 0 14 83 712 781 1.12e-17 77.0
Msa0389270 MtrunA17_Chr3g0084451 47.059 102 47 3 14 110 724 823 1.36e-17 76.6
Msa0389270 MtrunA17_Chr3g0084441 46.078 102 48 3 14 110 724 823 1.43e-17 76.6
Msa0389270 MtrunA17_Chr5g0393981 40.404 99 55 2 14 108 614 712 1.58e-17 76.6
Msa0389270 MtrunA17_Chr4g0023221 43.137 102 51 3 14 110 948 1047 1.62e-17 76.6
Msa0389270 MtrunA17_Chr3g0084691 46.939 98 50 2 14 110 740 836 3.50e-17 75.5
Msa0389270 MtrunA17_Chr4g0048801 44.737 76 42 0 15 90 737 812 3.75e-17 75.5
Msa0389270 MtrunA17_Chr3g0084661 42.268 97 54 1 14 110 251 345 3.82e-17 75.1
Msa0389270 MtrunA17_Chr8g0358031 43.243 74 41 1 14 86 697 770 4.76e-17 75.1
Msa0389270 MtrunA17_Chr8g0357631 45.205 73 39 1 14 85 686 758 6.56e-17 74.7
Msa0389270 MtrunA17_Chr3g0081031 43.137 102 53 3 14 110 570 671 1.17e-16 73.9
Msa0389270 MtrunA17_Chr2g0280681 40.000 105 55 3 14 110 719 823 1.35e-16 73.9
Msa0389270 MtrunA17_Chr3g0084631 48.571 70 36 0 14 83 81 150 1.79e-16 70.9
Msa0389270 MtrunA17_Chr3g0098781 42.105 95 50 1 14 108 129 218 1.93e-16 71.6
Msa0389270 MtrunA17_Chr3g0081001 42.105 95 44 3 14 97 561 655 1.98e-16 73.6
Msa0389270 MtrunA17_Chr8g0357781 40.845 71 41 1 14 83 49 119 2.16e-16 70.1
Msa0389270 MtrunA17_Chr8g0357761 43.038 79 43 2 14 90 698 776 2.17e-16 73.2
Msa0389270 MtrunA17_Chr8g0357691 43.056 72 40 1 15 85 697 768 3.29e-16 72.8
Msa0389270 MtrunA17_Chr7g0236201 36.893 103 59 2 14 110 687 789 5.67e-16 72.0
Msa0389270 MtrunA17_Chr4g0023111 44.595 74 40 1 14 86 932 1005 7.08e-16 72.0
Msa0389270 MtrunA17_Chr8g0357711 39.286 84 49 2 14 95 695 778 8.30e-16 71.6
Msa0389270 MtrunA17_Chr4g0048781 36.000 100 61 1 14 110 206 305 9.77e-16 70.9
Msa0389270 MtrunA17_Chr7g0236571 39.216 102 57 3 14 110 553 654 1.09e-15 71.2
Msa0389270 MtrunA17_Chr2g0280781 39.796 98 55 2 14 110 728 822 1.15e-15 71.2
Msa0389270 MtrunA17_Chr8g0357661 38.095 84 50 2 14 95 81 164 1.18e-15 68.6
Msa0389270 MtrunA17_Chr8g0354271 47.945 73 36 2 12 82 551 623 1.25e-15 71.2
Msa0389270 MtrunA17_Chr7g0236531 39.806 103 53 4 15 110 257 357 1.41e-15 70.9
Msa0389270 MtrunA17_Chr3g0081101 53.448 58 27 0 14 71 56 113 1.96e-15 67.8
Msa0389270 MtrunA17_Chr8g0340091 36.893 103 59 1 14 110 750 852 2.02e-15 70.5
Msa0389270 MtrunA17_Chr4g0048641 39.000 100 58 1 14 110 676 775 2.17e-15 70.5
Msa0389270 MtrunA17_Chr7g0236641 37.864 103 57 3 14 110 743 844 2.86e-15 70.1
Msa0389270 MtrunA17_Chr3g0084681 40.816 98 55 2 14 110 682 777 3.70e-15 69.7
Msa0389270 MtrunA17_Chr2g0323231 41.892 74 42 1 14 86 396 469 7.52e-15 68.9
Msa0389270 MtrunA17_Chr4g0055011 37.255 102 59 3 14 110 289 390 9.37e-15 68.6
Msa0389270 MtrunA17_Chr8g0340051 33.981 103 62 1 14 110 247 349 1.04e-14 68.2
Msa0389270 MtrunA17_Chr8g0357831 45.902 61 33 0 14 74 410 470 2.49e-14 67.4
Msa0389270 MtrunA17_Chr8g0357651 39.437 71 42 1 14 83 688 758 3.60e-14 67.0
Msa0389270 MtrunA17_Chr7g0236161 37.255 102 57 3 1 96 656 756 3.87e-14 67.0
Msa0389270 MtrunA17_Chr1g0206551 45.070 71 37 2 14 83 254 323 4.00e-14 66.6
Msa0389270 MtrunA17_Chr1g0206561 45.070 71 37 2 14 83 548 617 4.51e-14 66.6
Msa0389270 MtrunA17_Chr7g0236691 37.255 102 59 3 14 110 718 819 4.64e-14 66.6
Msa0389270 MtrunA17_Chr1g0154331 44.086 93 49 3 14 105 257 347 5.42e-14 66.2
Msa0389270 MtrunA17_Chr5g0428581 47.887 71 35 2 14 83 262 331 5.85e-14 66.2
Msa0389270 MtrunA17_Chr8g0360201 42.857 70 39 1 14 82 623 692 7.92e-14 65.9
Msa0389270 MtrunA17_Chr8g0361161 45.714 70 37 1 14 82 261 330 9.36e-14 65.5
Msa0389270 MtrunA17_Chr8g0340071 36.111 108 52 2 14 110 721 822 1.23e-13 65.5
Msa0389270 MtrunA17_Chr1g0206331 40.845 71 41 1 14 83 553 623 1.29e-13 65.5
Msa0389270 MtrunA17_Chr7g0236341 37.755 98 60 1 14 110 735 832 1.30e-13 65.5
Msa0389270 MtrunA17_Chr7g0236511 38.889 108 49 4 14 110 698 799 1.50e-13 65.1
Msa0389270 MtrunA17_Chr7g0236121 38.202 89 49 2 14 96 721 809 1.50e-13 65.1
Msa0389270 MtrunA17_Chr7g0236561 37.624 101 59 1 14 110 723 823 1.58e-13 65.1
Msa0389270 MtrunA17_Chr4g0048581 41.237 97 53 2 14 106 748 844 1.94e-13 65.1
Msa0389270 MtrunA17_Chr1g0205771 42.424 66 38 0 14 79 561 626 2.06e-13 64.7
Msa0389270 MtrunA17_Chr4g0048741 35.000 100 62 1 14 110 750 849 2.12e-13 64.7
Msa0389270 MtrunA17_Chr8g0340081 36.275 102 60 2 14 110 725 826 2.47e-13 64.7
Msa0389270 MtrunA17_Chr1g0206401 45.070 71 38 1 14 83 568 638 2.66e-13 64.7
Msa0389270 MtrunA17_Chr7g0236551 38.462 104 55 4 14 110 706 807 2.85e-13 64.3
Msa0389270 MtrunA17_Chr5g0426941 45.070 71 37 2 14 83 558 627 3.65e-13 64.3
Msa0389270 MtrunA17_Chr4g0048681 40.580 69 41 0 15 83 499 567 3.69e-13 63.9
Msa0389270 MtrunA17_Chr1g0206221 41.026 78 45 1 14 90 43 120 3.74e-13 61.6
Msa0389270 MtrunA17_Chr4g0048791 37.374 99 59 2 14 110 750 847 4.48e-13 63.9
Msa0389270 MtrunA17_Chr3g0119041 39.726 73 43 1 14 85 558 630 4.56e-13 63.9
Msa0389270 MtrunA17_Chr8g0347571 37.500 72 44 1 13 83 787 858 4.63e-13 63.9
Msa0389270 MtrunA17_Chr8g0361141 44.286 70 38 1 14 82 733 802 4.70e-13 63.9
Msa0389270 MtrunA17_Chr1g0154371 42.857 70 38 2 15 83 575 643 5.35e-13 63.5
Msa0389270 MtrunA17_Chr2g0280731 35.000 100 62 2 14 110 767 866 5.95e-13 63.5
Msa0389270 MtrunA17_Chr1g0206361 42.647 68 38 1 14 80 561 628 7.22e-13 63.2
Msa0389270 MtrunA17_Chr5g0428551 37.349 83 45 2 2 83 38 114 7.32e-13 60.8
Msa0389270 MtrunA17_Chr8g0340111 43.421 76 42 1 14 88 723 798 8.49e-13 63.2
Msa0389270 MtrunA17_Chr4g0048661 40.000 70 42 0 14 83 255 324 1.09e-12 62.8
Msa0389270 MtrunA17_Chr7g0236471 37.864 103 57 3 14 110 558 659 1.34e-12 62.4
Msa0389270 MtrunA17_Chr1g0206231 37.778 90 51 2 14 102 564 649 1.52e-12 62.4
Msa0389270 MtrunA17_Chr2g0280751 37.000 100 60 2 14 110 743 842 1.98e-12 62.0
Msa0389270 MtrunA17_Chr1g0206321 39.744 78 46 1 14 90 50 127 2.07e-12 59.7
Msa0389270 MtrunA17_Chr4g0048731 37.143 70 44 0 14 83 264 333 2.61e-12 61.6
Msa0389270 MtrunA17_Chr6g0474901 40.845 71 41 1 14 83 785 855 3.02e-12 61.6
Msa0389270 MtrunA17_Chr1g0206391 42.500 80 41 2 5 83 253 328 3.89e-12 61.2
Msa0389270 MtrunA17_Chr1g0206421 56.140 57 24 1 25 80 454 510 5.45e-12 60.8
Msa0389270 MtrunA17_Chr6g0474871 37.805 82 46 2 3 83 777 854 5.85e-12 60.8
Msa0389270 MtrunA17_Chr1g0154311 45.714 70 36 2 14 82 569 637 6.24e-12 60.5
Msa0389270 MtrunA17_Chr1g0154351 45.714 70 36 2 14 82 576 644 7.09e-12 60.5
Msa0389270 MtrunA17_Chr6g0475091 36.585 82 47 2 3 83 793 870 7.84e-12 60.5
Msa0389270 MtrunA17_Chr5g0428511 43.056 72 38 2 14 83 2 72 8.18e-12 57.0
Msa0389270 MtrunA17_Chr6g0474861 37.778 90 49 3 3 89 498 583 8.61e-12 60.1
Msa0389270 MtrunA17_Chr4g0065561 34.375 96 59 2 14 108 664 756 1.01e-11 60.1
Msa0389270 MtrunA17_Chr6g0474961 36.986 73 45 1 12 83 132 204 1.27e-11 58.9
Msa0389270 MtrunA17_Chr4g0048711 35.714 70 45 0 14 83 147 216 1.38e-11 59.7
Msa0389270 MtrunA17_Chr7g0236651 35.000 100 56 3 14 110 703 796 1.40e-11 59.7
Msa0389270 MtrunA17_Chr4g0065521 37.179 78 48 1 14 90 255 332 1.53e-11 59.3
Msa0389270 MtrunA17_Chr1g0206261 39.506 81 44 3 15 94 308 384 2.04e-11 58.9
Msa0389270 MtrunA17_Chr1g0154321 48.276 58 29 1 14 71 586 642 2.19e-11 58.9
Msa0389270 MtrunA17_Chr5g0394021 38.947 95 54 3 14 107 539 630 2.24e-11 58.9
Msa0389270 MtrunA17_Chr6g0475181 32.955 88 58 1 13 99 33 120 3.69e-11 55.8
Msa0389270 MtrunA17_Chr4g0020081 34.653 101 62 3 14 110 728 828 3.91e-11 58.5
Msa0389270 MtrunA17_Chr8g0357871 46.000 50 27 0 17 66 49 98 4.14e-11 55.5
Msa0389270 MtrunA17_Chr6g0475131 30.693 101 67 2 13 110 227 327 7.93e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389270 AT4G23150.1 43.158 95 50 2 14 107 553 644 3.00e-20 84.7
Msa0389270 AT3G45860.1 39.623 106 54 2 15 110 571 676 3.69e-20 84.3
Msa0389270 AT4G27300.1 46.465 99 51 2 14 110 717 815 9.43e-20 83.2
Msa0389270 AT4G23270.2 42.574 101 53 2 15 110 545 645 1.17e-19 83.2
Msa0389270 AT4G23270.1 42.574 101 53 2 15 110 545 645 1.17e-19 83.2
Msa0389270 AT4G23270.3 51.389 72 34 1 15 85 545 616 1.50e-19 82.8
Msa0389270 AT4G23180.1 37.143 105 58 3 14 110 565 669 1.60e-19 82.8
Msa0389270 AT4G23280.3 39.423 104 55 2 15 110 513 616 4.53e-19 81.3
Msa0389270 AT1G11350.1 40.196 102 56 2 14 110 729 830 1.12e-18 80.1
Msa0389270 AT1G11330.1 36.275 102 60 2 14 110 739 840 1.24e-18 80.1
Msa0389270 AT1G11330.2 36.275 102 60 2 14 110 741 842 1.24e-18 80.1
Msa0389270 AT4G23280.2 39.423 104 55 2 15 110 561 664 1.39e-18 80.1
Msa0389270 AT4G23280.1 39.423 104 55 2 15 110 563 666 1.42e-18 80.1
Msa0389270 AT4G23300.1 46.575 73 38 1 14 85 573 645 2.65e-18 79.3
Msa0389270 AT4G03230.2 43.269 104 52 2 14 110 807 910 3.81e-18 79.0
Msa0389270 AT4G03230.6 43.269 104 52 2 14 110 807 910 3.81e-18 79.0
Msa0389270 AT4G03230.5 43.269 104 52 2 14 110 835 938 3.86e-18 78.6
Msa0389270 AT4G03230.8 43.269 104 52 2 14 110 749 852 3.91e-18 78.6
Msa0389270 AT4G03230.4 43.269 104 52 2 14 110 907 1010 3.91e-18 78.6
Msa0389270 AT4G03230.1 43.269 104 52 2 14 110 907 1010 3.91e-18 78.6
Msa0389270 AT4G03230.7 43.269 104 52 2 14 110 750 853 4.14e-18 78.6
Msa0389270 AT4G03230.3 43.269 104 52 2 14 110 742 845 4.22e-18 78.6
Msa0389270 AT4G23220.1 37.143 105 58 2 14 110 554 658 4.34e-18 78.6
Msa0389270 AT4G23130.2 48.611 72 36 1 15 85 563 634 4.56e-18 78.6
Msa0389270 AT4G23130.1 48.611 72 36 1 15 85 559 630 4.65e-18 78.6
Msa0389270 AT4G11470.1 43.182 88 46 2 15 101 558 642 8.92e-18 77.8
Msa0389270 AT4G11480.1 47.368 76 39 1 15 89 548 623 9.08e-18 77.8
Msa0389270 AT4G11480.3 47.368 76 39 1 15 89 543 618 9.26e-18 77.8
Msa0389270 AT4G11480.4 47.368 76 39 1 15 89 540 615 9.34e-18 77.8
Msa0389270 AT4G11470.2 43.182 88 46 2 15 101 563 647 1.04e-17 77.4
Msa0389270 AT4G23140.1 41.304 92 51 2 14 102 568 659 1.24e-17 77.4
Msa0389270 AT4G23140.2 41.304 92 51 2 14 102 574 665 1.24e-17 77.4
Msa0389270 AT4G27290.2 48.039 102 48 3 14 110 728 829 1.88e-17 76.6
Msa0389270 AT4G11530.1 48.571 70 35 1 14 82 570 639 1.98e-17 76.6
Msa0389270 AT4G27290.1 48.039 102 48 3 14 110 682 783 2.28e-17 76.6
Msa0389270 AT4G23200.1 46.479 71 37 1 14 83 554 624 2.38e-17 76.6
Msa0389270 AT1G11303.1 37.624 101 58 2 15 110 720 820 3.86e-17 75.9
Msa0389270 AT4G23310.2 36.538 104 58 2 15 110 687 790 6.90e-17 75.1
Msa0389270 AT4G23310.1 36.538 104 58 2 15 110 727 830 6.92e-17 75.1
Msa0389270 AT4G23160.1 39.785 93 52 2 15 106 577 666 9.30e-17 74.7
Msa0389270 AT4G23240.2 48.750 80 39 2 14 92 246 324 1.18e-16 73.9
Msa0389270 AT4G23240.1 49.367 79 38 2 15 92 554 631 2.47e-16 73.6
Msa0389270 AT4G21390.1 40.952 105 54 3 14 110 745 849 2.98e-16 73.2
Msa0389270 AT4G23250.3 47.297 74 38 1 14 86 572 645 3.00e-16 73.2
Msa0389270 AT4G00970.1 40.196 102 55 4 15 110 564 665 3.28e-16 73.2
Msa0389270 AT4G23250.1 47.297 74 38 1 14 86 577 650 3.42e-16 73.2
Msa0389270 AT4G11460.3 39.450 109 53 4 15 110 565 673 3.46e-16 73.2
Msa0389270 AT4G11460.1 39.450 109 53 4 15 110 568 676 3.46e-16 73.2
Msa0389270 AT1G11300.1 38.614 101 57 2 15 110 720 820 3.47e-16 73.2
Msa0389270 AT4G11460.2 39.450 109 53 4 15 110 490 598 3.52e-16 73.2
Msa0389270 AT4G23230.1 42.683 82 44 2 4 82 542 623 3.63e-16 73.2
Msa0389270 AT1G11300.2 38.614 101 57 2 15 110 705 805 3.71e-16 73.2
Msa0389270 AT4G23250.2 47.945 73 37 1 15 86 573 645 4.57e-16 72.8
Msa0389270 AT1G61500.3 34.545 110 71 1 2 110 700 809 5.64e-16 72.4
Msa0389270 AT1G61500.1 34.545 110 71 1 2 110 695 804 5.86e-16 72.4
Msa0389270 AT1G61500.2 34.545 110 71 1 2 110 677 786 6.14e-16 72.4
Msa0389270 AT4G23190.1 43.836 73 40 1 14 85 570 642 8.84e-16 72.0
Msa0389270 AT4G23290.1 45.570 79 41 2 15 92 539 616 9.35e-16 72.0
Msa0389270 AT4G23190.3 43.836 73 40 1 14 85 492 564 1.04e-15 71.6
Msa0389270 AT4G23190.4 43.836 73 40 1 14 85 492 564 1.04e-15 71.6
Msa0389270 AT1G61390.2 35.052 97 63 0 14 110 567 663 1.07e-15 71.6
Msa0389270 AT1G61390.1 35.052 97 63 0 14 110 735 831 1.09e-15 71.6
Msa0389270 AT4G23260.1 40.566 106 51 3 14 110 557 659 1.30e-15 71.6
Msa0389270 AT4G23260.2 40.566 106 51 3 14 110 546 648 1.35e-15 71.6
Msa0389270 AT4G23290.2 45.570 79 41 2 15 92 582 659 1.53e-15 71.2
Msa0389270 AT4G21230.1 42.529 87 47 1 14 97 549 635 1.71e-15 71.2
Msa0389270 AT1G61610.1 39.216 102 57 2 14 110 741 842 2.40e-15 70.9
Msa0389270 AT4G21380.1 49.315 73 33 2 14 82 743 815 5.13e-15 69.7
Msa0389270 AT4G00960.2 36.190 105 59 3 14 110 181 285 5.57e-15 68.9
Msa0389270 AT4G00960.3 36.190 105 59 3 14 110 188 292 5.78e-15 68.9
Msa0389270 AT4G00960.1 36.190 105 59 3 14 110 275 379 6.65e-15 69.3
Msa0389270 AT1G61460.1 35.052 97 63 0 14 110 653 749 7.80e-15 69.3
Msa0389270 AT1G61490.3 34.234 111 71 2 2 110 544 654 1.04e-14 68.9
Msa0389270 AT1G61490.4 34.694 98 63 1 14 110 707 804 1.30e-14 68.6
Msa0389270 AT1G61490.1 34.694 98 63 1 14 110 707 804 1.30e-14 68.6
Msa0389270 AT1G61490.2 34.694 98 63 1 14 110 707 804 1.30e-14 68.6
Msa0389270 AT1G61490.5 34.694 98 63 1 14 110 707 804 1.30e-14 68.6
Msa0389270 AT1G61490.6 34.694 98 63 1 14 110 681 778 1.34e-14 68.6
Msa0389270 AT1G61490.7 34.694 98 63 1 14 110 681 778 1.34e-14 68.6
Msa0389270 AT4G23320.2 43.750 80 43 2 14 92 401 479 1.38e-14 68.6
Msa0389270 AT4G23320.1 43.750 80 43 2 14 92 401 479 1.38e-14 68.6
Msa0389270 AT4G23320.3 43.750 80 43 2 14 92 422 500 1.53e-14 68.6
Msa0389270 AT1G61480.1 32.727 110 73 1 2 110 700 809 2.97e-14 67.8
Msa0389270 AT1G61370.2 35.052 97 63 0 14 110 567 663 3.07e-14 67.8
Msa0389270 AT1G61370.1 35.052 97 63 0 14 110 718 814 3.12e-14 67.8
Msa0389270 AT1G65800.1 45.946 74 35 2 14 82 740 813 5.09e-14 67.0
Msa0389270 AT1G67520.5 38.333 120 62 6 2 110 463 581 6.22e-14 66.6
Msa0389270 AT1G67520.8 38.333 120 62 6 2 110 492 610 7.16e-14 66.6
Msa0389270 AT1G67520.7 38.333 120 62 6 2 110 492 610 7.16e-14 66.6
Msa0389270 AT1G61420.3 30.928 97 67 0 14 110 561 657 7.95e-14 66.2
Msa0389270 AT1G61420.5 30.928 97 67 0 14 110 563 659 8.26e-14 66.2
Msa0389270 AT4G11900.1 37.500 96 59 1 15 110 755 849 9.66e-14 66.2
Msa0389270 AT4G23210.3 41.975 81 43 2 15 94 574 651 9.77e-14 66.2
Msa0389270 AT1G61420.2 30.928 97 67 0 14 110 713 809 1.01e-13 66.2
Msa0389270 AT1G61420.4 30.928 97 67 0 14 110 713 809 1.01e-13 66.2
Msa0389270 AT1G61420.1 30.928 97 67 0 14 110 711 807 1.05e-13 66.2
Msa0389270 AT1G67520.3 38.333 120 62 6 2 110 700 818 1.06e-13 66.2
Msa0389270 AT4G11900.9 37.500 96 59 1 15 110 686 780 1.09e-13 65.9
Msa0389270 AT1G67520.4 38.333 120 62 6 2 110 657 775 1.21e-13 65.9
Msa0389270 AT1G67520.6 38.333 120 62 6 2 110 707 825 1.28e-13 65.9
Msa0389270 AT1G61550.1 34.021 97 64 0 14 110 706 802 1.39e-13 65.9
Msa0389270 AT1G65790.1 44.595 74 36 2 14 82 736 809 1.60e-13 65.5
Msa0389270 AT1G61440.3 33.673 98 64 1 14 110 700 797 1.67e-13 65.5
Msa0389270 AT1G61440.1 33.673 98 64 1 14 110 695 792 1.72e-13 65.5
Msa0389270 AT1G61440.2 33.673 98 64 1 14 110 725 822 1.74e-13 65.5
Msa0389270 AT4G05200.2 34.906 106 66 2 5 107 573 678 2.07e-13 65.1
Msa0389270 AT4G05200.1 34.906 106 66 2 5 107 555 660 2.15e-13 65.1
Msa0389270 AT1G61380.2 33.663 101 63 1 14 110 558 658 2.58e-13 65.1
Msa0389270 AT1G61380.1 33.663 101 63 1 14 110 705 805 2.59e-13 65.1
Msa0389270 AT1G61430.11 33.333 111 72 2 2 110 670 780 2.91e-13 64.7
Msa0389270 AT1G61430.12 33.333 111 72 2 2 110 670 780 2.91e-13 64.7
Msa0389270 AT1G61430.13 33.333 111 72 2 2 110 670 780 2.91e-13 64.7
Msa0389270 AT1G61430.1 33.673 98 64 1 14 110 709 806 2.94e-13 64.7
Msa0389270 AT1G61430.9 33.673 98 64 1 14 110 706 803 3.00e-13 64.7
Msa0389270 AT1G61400.2 31.633 98 66 1 14 110 725 822 3.44e-13 64.7
Msa0389270 AT1G61400.1 31.633 98 66 1 14 110 717 814 3.79e-13 64.3
Msa0389270 AT1G11280.3 36.364 99 61 1 14 110 710 808 4.69e-13 64.3
Msa0389270 AT1G11280.1 36.364 99 61 1 14 110 732 830 4.94e-13 64.3
Msa0389270 AT1G11280.4 36.364 99 61 1 14 110 720 818 4.98e-13 64.3
Msa0389270 AT1G11280.2 36.364 99 61 1 14 110 722 820 5.23e-13 63.9
Msa0389270 AT4G11490.1 40.000 70 41 1 14 82 539 608 5.53e-13 63.9
Msa0389270 AT1G11410.3 37.383 107 56 4 15 110 715 821 8.34e-13 63.5
Msa0389270 AT1G11410.1 37.383 107 56 4 15 110 739 845 8.44e-13 63.5
Msa0389270 AT1G11410.4 37.383 107 56 4 15 110 746 852 8.53e-13 63.5
Msa0389270 AT1G11410.2 37.383 107 56 4 15 110 624 730 8.59e-13 63.5
Msa0389270 AT4G38830.1 42.683 82 44 2 5 83 553 634 2.82e-12 62.0
Msa0389270 AT3G16030.6 41.333 75 41 2 12 83 764 838 8.30e-12 60.8
Msa0389270 AT3G16030.1 41.333 75 41 2 12 83 743 817 8.45e-12 60.8
Msa0389270 AT3G16030.2 41.333 75 41 2 12 83 620 694 9.11e-12 60.5
Msa0389270 AT1G11340.1 37.500 104 56 4 15 110 731 833 1.95e-11 59.7
Msa0389270 AT4G04510.2 39.796 98 56 3 14 110 555 650 5.45e-11 58.2
Msa0389270 AT4G04510.1 39.796 98 56 3 14 110 553 648 5.60e-11 58.2
Msa0389270 AT4G21400.8 41.053 95 51 4 15 108 472 562 6.79e-11 58.2
Msa0389270 AT4G21400.7 41.053 95 51 4 15 108 573 663 7.24e-11 58.2
Msa0389270 AT4G21400.1 41.053 95 51 4 15 108 583 673 7.84e-11 57.8
Msa0389270 AT4G21400.2 41.053 95 51 4 15 108 571 661 8.79e-11 57.8

Find 29 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAGAAACCAGGTTCTTT+AGG 0.262510 3_1:-93984281 None:intergenic
TTAACCATTACATCGTTAAA+TGG 0.268398 3_1:+93984356 Msa0389270:CDS
GAACTAATTTCATTCTGATT+TGG 0.301252 3_1:-93984323 None:intergenic
AAGGTGGATGCGAGAATGTT+TGG 0.386429 3_1:+93983710 None:intergenic
GTTGATTGACTCAAGAATAA+AGG 0.388641 3_1:+93984127 Msa0389270:CDS
TGAACAACAGATGTCATTGT+AGG 0.408934 3_1:-93984227 None:intergenic
GTCATTGTAGGCCTATCCTC+TGG 0.422339 3_1:-93984215 None:intergenic
TCGTCCATTTAACGATGTAA+TGG 0.453724 3_1:-93984360 None:intergenic
GGTTCATCAGAAACTTTCCT+TGG 0.469671 3_1:-93984302 None:intergenic
TCAAATGCTAGGTAGTGAAA+TGG 0.469703 3_1:+93984247 Msa0389270:CDS
AAGAACCTGGTTTCTTTCCA+AGG 0.471571 3_1:+93984285 Msa0389270:CDS
CACTCAACTCTCTCGTTCCC+AGG 0.472768 3_1:-93983742 None:intergenic
ACATCTGTTGTTCAAATGCT+AGG 0.521271 3_1:+93984236 Msa0389270:CDS
GCTAGGTAGTGAAATGGAAC+TGG 0.521322 3_1:+93984253 Msa0389270:CDS
CTGGTTGAACCTAAAGAACC+TGG 0.526363 3_1:+93984272 Msa0389270:CDS
GGCATGGGCACTTTGGAAAG+AGG 0.545530 3_1:+93984091 Msa0389270:intron
TCATTGTAGGCCTATCCTCT+GGG 0.546143 3_1:-93984214 None:intergenic
AATGTTTGGATATGATGTCC+TGG 0.554180 3_1:+93983724 None:intergenic
GGAATCCTGTGTGGTGTCAG+AGG 0.579702 3_1:+93984148 Msa0389270:CDS
GCATGGGCACTTTGGAAAGA+GGG 0.596061 3_1:+93984092 Msa0389270:CDS
ACTTTCCTTGGAAAGAAACC+AGG 0.596835 3_1:-93984290 None:intergenic
TTGGAAAGAGGGAAAAGCAT+GGG 0.615006 3_1:+93984103 Msa0389270:CDS
TGCAACAATACCCAGAGGAT+AGG 0.621255 3_1:+93984204 Msa0389270:CDS
ATGTTTGGATATGATGTCCT+GGG 0.631812 3_1:+93983725 Msa0389270:CDS
TTTGGAAAGAGGGAAAAGCA+TGG 0.660152 3_1:+93984102 Msa0389270:CDS
CGATGCCTCTGACACCACAC+AGG 0.668723 3_1:-93984153 None:intergenic
GCACACACAACAGACTCACA+TGG 0.685544 3_1:-93984184 None:intergenic
AAGAATAAAGGAATCCTGTG+TGG 0.688929 3_1:+93984139 Msa0389270:CDS
GTGTGTGCAACAATACCCAG+AGG 0.838693 3_1:+93984199 Msa0389270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAATTAATTTTTTT+TGG + chr3_1:93983782-93983801 Msa0389270:intron 0.0%
!!! TTAAAAAATCTTTTCATTAT+CGG - chr3_1:93983843-93983862 None:intergenic 10.0%
!!! TTTTTTGTTTTTTATTTTGC+AGG + chr3_1:93984070-93984089 Msa0389270:intron 15.0%
!! TTTAAAAAACTAGGATAGAA+AGG - chr3_1:93983771-93983790 None:intergenic 20.0%
!!! TTTTTTTGGTTTATTGTAGA+AGG + chr3_1:93983796-93983815 Msa0389270:intron 20.0%
! ATAATGTATGTGGAATATCA+AGG - chr3_1:93984018-93984037 None:intergenic 25.0%
! TCACAAATAGATAATGTATG+TGG - chr3_1:93984028-93984047 None:intergenic 25.0%
! GAACTAATTTCATTCTGATT+TGG - chr3_1:93984326-93984345 None:intergenic 25.0%
! TTAACCATTACATCGTTAAA+TGG + chr3_1:93984356-93984375 Msa0389270:CDS 25.0%
CTAAACTTTACGAATCATGT+TGG - chr3_1:93983902-93983921 None:intergenic 30.0%
AAAATCACGTGATTCTAACA+AGG - chr3_1:93983931-93983950 None:intergenic 30.0%
ATGCAGCATTTAGAAAATCA+CGG + chr3_1:93983965-93983984 Msa0389270:intron 30.0%
!!! TGTTTTTTATTTTGCAGGCA+TGG + chr3_1:93984075-93984094 Msa0389270:intron 30.0%
!!! GTTTTTTATTTTGCAGGCAT+GGG + chr3_1:93984076-93984095 Msa0389270:intron 30.0%
! GTTGATTGACTCAAGAATAA+AGG + chr3_1:93984127-93984146 Msa0389270:CDS 30.0%
ATGTTTGGATATGATGTCCT+GGG + chr3_1:93983725-93983744 Msa0389270:CDS 35.0%
TGTATGTGGAATATCAAGGT+AGG - chr3_1:93984014-93984033 None:intergenic 35.0%
AAGAATAAAGGAATCCTGTG+TGG + chr3_1:93984139-93984158 Msa0389270:CDS 35.0%
TGAACAACAGATGTCATTGT+AGG - chr3_1:93984230-93984249 None:intergenic 35.0%
ACATCTGTTGTTCAAATGCT+AGG + chr3_1:93984236-93984255 Msa0389270:CDS 35.0%
TCAAATGCTAGGTAGTGAAA+TGG + chr3_1:93984247-93984266 Msa0389270:CDS 35.0%
TCGTCCATTTAACGATGTAA+TGG - chr3_1:93984363-93984382 None:intergenic 35.0%
CAAGAAAGCAAAGAATGACG+TGG - chr3_1:93983879-93983898 None:intergenic 40.0%
CAGCATTTAGAAAATCACGG+TGG + chr3_1:93983968-93983987 Msa0389270:intron 40.0%
TTTGGAAAGAGGGAAAAGCA+TGG + chr3_1:93984102-93984121 Msa0389270:CDS 40.0%
! TTGGAAAGAGGGAAAAGCAT+GGG + chr3_1:93984103-93984122 Msa0389270:CDS 40.0%
GGAAAGAAACCAGGTTCTTT+AGG - chr3_1:93984284-93984303 None:intergenic 40.0%
AAGAACCTGGTTTCTTTCCA+AGG + chr3_1:93984285-93984304 Msa0389270:CDS 40.0%
ACTTTCCTTGGAAAGAAACC+AGG - chr3_1:93984293-93984312 None:intergenic 40.0%
GGTTCATCAGAAACTTTCCT+TGG - chr3_1:93984305-93984324 None:intergenic 40.0%
AGGTAGGTATGCCAGAATCA+CGG - chr3_1:93983998-93984017 None:intergenic 45.0%
TGCAACAATACCCAGAGGAT+AGG + chr3_1:93984204-93984223 Msa0389270:CDS 45.0%
TCATTGTAGGCCTATCCTCT+GGG - chr3_1:93984217-93984236 None:intergenic 45.0%
GCTAGGTAGTGAAATGGAAC+TGG + chr3_1:93984253-93984272 Msa0389270:CDS 45.0%
CTGGTTGAACCTAAAGAACC+TGG + chr3_1:93984272-93984291 Msa0389270:CDS 45.0%
!! AAAAATTAATTTAAAAAACT+AGG - chr3_1:93983780-93983799 None:intergenic 5.0%
! TTTTGCAGGCATGGGCACTT+TGG + chr3_1:93984084-93984103 Msa0389270:intron 50.0%
! GCATGGGCACTTTGGAAAGA+GGG + chr3_1:93984092-93984111 Msa0389270:CDS 50.0%
GCACACACAACAGACTCACA+TGG - chr3_1:93984187-93984206 None:intergenic 50.0%
GTGTGTGCAACAATACCCAG+AGG + chr3_1:93984199-93984218 Msa0389270:CDS 50.0%
GTCATTGTAGGCCTATCCTC+TGG - chr3_1:93984218-93984237 None:intergenic 50.0%
CACTCAACTCTCTCGTTCCC+AGG - chr3_1:93983745-93983764 None:intergenic 55.0%
ACGGTGGCTTACCGTGATTC+TGG + chr3_1:93983984-93984003 Msa0389270:intron 55.0%
! GGCATGGGCACTTTGGAAAG+AGG + chr3_1:93984091-93984110 Msa0389270:intron 55.0%
! GGAATCCTGTGTGGTGTCAG+AGG + chr3_1:93984148-93984167 Msa0389270:CDS 55.0%
CGATGCCTCTGACACCACAC+AGG - chr3_1:93984156-93984175 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93983725 93984385 93983725 ID=Msa0389270;Name=Msa0389270
chr3_1 mRNA 93983725 93984385 93983725 ID=Msa0389270-mRNA-1;Parent=Msa0389270;Name=Msa0389270-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.5|0|0.5|2|0|110
chr3_1 exon 93983725 93983763 93983725 ID=Msa0389270-mRNA-1:exon:26671;Parent=Msa0389270-mRNA-1
chr3_1 exon 93984092 93984385 93984092 ID=Msa0389270-mRNA-1:exon:26672;Parent=Msa0389270-mRNA-1
chr3_1 CDS 93983725 93983763 93983725 ID=Msa0389270-mRNA-1:cds;Parent=Msa0389270-mRNA-1
chr3_1 CDS 93984092 93984385 93984092 ID=Msa0389270-mRNA-1:cds;Parent=Msa0389270-mRNA-1
Gene Sequence

>Msa0389270

ATGTTTGGATATGATGTCCTGGGAACGAGAGAGTTGAGTGCATGGGCACTTTGGAAAGAGGGAAAAGCATGGGAGTTGATTGACTCAAGAATAAAGGAATCCTGTGTGGTGTCAGAGGCATCGCGATGCATCCATGTGAGTCTGTTGTGTGTGCAACAATACCCAGAGGATAGGCCTACAATGACATCTGTTGTTCAAATGCTAGGTAGTGAAATGGAACTGGTTGAACCTAAAGAACCTGGTTTCTTTCCAAGGAAAGTTTCTGATGAACCAAATCAGAATGAAATTAGTTCAAATGAAGAATTAACCATTACATCGTTAAATGGACGATGA
Protein sequence

>Msa0389270

MFGYDVLGTRELSAWALWKEGKAWELIDSRIKESCVVSEASRCIHVSLLCVQQYPEDRPTMTSVVQMLGSEMELVEPKEPGFFPRKVSDEPNQNEISSNEELTITSLNGR*