Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252260 | XP_013446173.1 | 98.824 | 510 | 6 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1029 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252260 | sp|Q9LPV5|NRT25_ARATH | 74.526 | 475 | 121 | 0 | 17 | 491 | 19 | 493 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252260 | A0A072U314 | 98.824 | 510 | 6 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1029 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1252260 | 0.800860 | 1.182112e-48 | -8.615850e-47 |
| Msa0007990 | Msa1252260 | 0.825634 | 4.213041e-54 | -8.615850e-47 |
| Msa0079070 | Msa1252260 | 0.811159 | 8.047578e-51 | -8.615850e-47 |
| Msa0092410 | Msa1252260 | 0.810302 | 1.233107e-50 | -8.615850e-47 |
| Msa0095560 | Msa1252260 | 0.800902 | 1.158785e-48 | -8.615850e-47 |
| Msa0099210 | Msa1252260 | 0.816202 | 6.245370e-52 | -8.615850e-47 |
| Msa0103250 | Msa1252260 | 0.804012 | 2.649132e-49 | -8.615850e-47 |
| Msa0105070 | Msa1252260 | 0.810091 | 1.369435e-50 | -8.615850e-47 |
| Msa0622170 | Msa1252260 | -0.844249 | 8.499524e-59 | -8.615850e-47 |
| Msa0648860 | Msa1252260 | 0.818202 | 2.216935e-52 | -8.615850e-47 |
| Msa0661650 | Msa1252260 | 0.818827 | 1.599296e-52 | -8.615850e-47 |
| Msa0666650 | Msa1252260 | 0.807929 | 3.976378e-50 | -8.615850e-47 |
| Msa0708310 | Msa1252260 | 0.829719 | 4.398734e-55 | -8.615850e-47 |
| Msa0711150 | Msa1252260 | 0.802007 | 6.882753e-49 | -8.615850e-47 |
| Msa0751850 | Msa1252260 | 0.805472 | 1.313251e-49 | -8.615850e-47 |
| Msa0753720 | Msa1252260 | 0.801862 | 7.370519e-49 | -8.615850e-47 |
| Msa0797770 | Msa1252260 | 0.808178 | 3.519131e-50 | -8.615850e-47 |
| Msa0818060 | Msa1252260 | 0.807399 | 5.152675e-50 | -8.615850e-47 |
| Msa0831850 | Msa1252260 | 0.811314 | 7.448161e-51 | -8.615850e-47 |
| Msa0835230 | Msa1252260 | 0.813885 | 2.040763e-51 | -8.615850e-47 |
| Msa0131770 | Msa1252260 | 0.808376 | 3.192269e-50 | -8.615850e-47 |
| Msa0138020 | Msa1252260 | 0.812097 | 5.032321e-51 | -8.615850e-47 |
| Msa0149300 | Msa1252260 | 0.826104 | 3.258043e-54 | -8.615850e-47 |
| Msa0187830 | Msa1252260 | 0.819228 | 1.296739e-52 | -8.615850e-47 |
| Msa0190530 | Msa1252260 | 0.805808 | 1.116337e-49 | -8.615850e-47 |
| Msa0200850 | Msa1252260 | 0.824805 | 6.613657e-54 | -8.615850e-47 |
| Msa0204840 | Msa1252260 | 0.806021 | 1.006708e-49 | -8.615850e-47 |
| Msa0218370 | Msa1252260 | 0.809709 | 1.654934e-50 | -8.615850e-47 |
| Msa1246700 | Msa1252260 | 0.819447 | 1.155620e-52 | -8.615850e-47 |
| Msa1252260 | Msa1270660 | 0.810027 | 1.413670e-50 | -8.615850e-47 |
| Msa1252260 | Msa1270730 | 0.801764 | 7.720326e-49 | -8.615850e-47 |
| Msa1252260 | Msa1291450 | 0.811315 | 7.446026e-51 | -8.615850e-47 |
| Msa1252260 | Msa1291830 | 0.802653 | 5.066436e-49 | -8.615850e-47 |
| Msa1252260 | Msa1292990 | 0.889927 | 1.561203e-73 | -8.615850e-47 |
| Msa1252260 | Msa1304890 | -0.845706 | 3.436349e-59 | -8.615850e-47 |
| Msa1252260 | Msa1305810 | 0.810833 | 9.467694e-51 | -8.615850e-47 |
| Msa1252260 | Msa1308870 | 0.813496 | 2.486083e-51 | -8.615850e-47 |
| Msa1252260 | Msa1330170 | 0.800911 | 1.154114e-48 | -8.615850e-47 |
| Msa1252260 | Msa1345940 | 0.809815 | 1.570518e-50 | -8.615850e-47 |
| Msa1252260 | Msa1353890 | 0.811698 | 6.145727e-51 | -8.615850e-47 |
| Msa1252260 | Msa1355890 | 0.804823 | 1.795751e-49 | -8.615850e-47 |
| Msa1252260 | Msa1365270 | 0.813358 | 2.664878e-51 | -8.615850e-47 |
| Msa1252260 | Msa1376450 | 0.813355 | 2.669579e-51 | -8.615850e-47 |
| Msa1252260 | Msa1378040 | 0.802454 | 5.567555e-49 | -8.615850e-47 |
| Msa1252260 | Msa1381530 | 0.802942 | 4.416003e-49 | -8.615850e-47 |
| Msa1252260 | Msa1383100 | 0.814876 | 1.232354e-51 | -8.615850e-47 |
| Msa1252260 | Msa1384280 | 0.816705 | 4.817495e-52 | -8.615850e-47 |
| Msa1252260 | Msa1394380 | 0.842677 | 2.235011e-58 | -8.615850e-47 |
| Msa1252260 | Msa1408340 | 0.801109 | 1.051551e-48 | -8.615850e-47 |
| Msa1252260 | Msa1424630 | 0.811657 | 6.273691e-51 | -8.615850e-47 |
| Msa1252260 | Msa1430550 | 0.804882 | 1.744729e-49 | -8.615850e-47 |
| Msa1252260 | Msa1435270 | 0.801338 | 9.438191e-49 | -8.615850e-47 |
| Msa1252260 | Msa1440560 | 0.806401 | 8.374388e-50 | -8.615850e-47 |
| Msa1252260 | Msa1454570 | 0.805685 | 1.184690e-49 | -8.615850e-47 |
| Msa1252260 | Msa1466540 | 0.819050 | 1.423478e-52 | -8.615850e-47 |
| Msa0365780 | Msa1252260 | 0.813027 | 3.150931e-51 | -8.615850e-47 |
| Msa0367870 | Msa1252260 | 0.808718 | 2.699025e-50 | -8.615850e-47 |
| Msa0381610 | Msa1252260 | -0.802473 | 5.517144e-49 | -8.615850e-47 |
| Msa0389270 | Msa1252260 | 0.821458 | 3.994907e-53 | -8.615850e-47 |
| Msa0389910 | Msa1252260 | 0.804659 | 1.943007e-49 | -8.615850e-47 |
| Msa0393620 | Msa1252260 | 0.836596 | 8.530565e-57 | -8.615850e-47 |
| Msa0394120 | Msa1252260 | 0.800783 | 1.225402e-48 | -8.615850e-47 |
| Msa0394470 | Msa1252260 | 0.800368 | 1.489629e-48 | -8.615850e-47 |
| Msa0411390 | Msa1252260 | 0.817963 | 2.510167e-52 | -8.615850e-47 |
| Msa0455760 | Msa1252260 | 0.829866 | 4.049866e-55 | -8.615850e-47 |
| Msa0464100 | Msa1252260 | 0.802810 | 4.702336e-49 | -8.615850e-47 |
| Msa0999290 | Msa1252260 | 0.815167 | 1.061987e-51 | -8.615850e-47 |
| Msa0999680 | Msa1252260 | 0.815569 | 8.643032e-52 | -8.615850e-47 |
| Msa1000150 | Msa1252260 | 0.809706 | 1.657631e-50 | -8.615850e-47 |
| Msa1016320 | Msa1252260 | 0.816040 | 6.786496e-52 | -8.615850e-47 |
| Msa1039710 | Msa1252260 | -0.847006 | 1.518918e-59 | -8.615850e-47 |
| Msa1054990 | Msa1252260 | 0.802799 | 4.726085e-49 | -8.615850e-47 |
| Msa1100050 | Msa1252260 | 0.804610 | 1.989302e-49 | -8.615850e-47 |
| Msa1100930 | Msa1252260 | 0.800004 | 1.766494e-48 | -8.615850e-47 |
| Msa0243480 | Msa1252260 | 0.819853 | 9.337288e-53 | -8.615850e-47 |
| Msa0244140 | Msa1252260 | 0.811551 | 6.616966e-51 | -8.615850e-47 |
| Msa0244190 | Msa1252260 | 0.822685 | 2.075487e-53 | -8.615850e-47 |
| Msa0267370 | Msa1252260 | 0.814893 | 1.221704e-51 | -8.615850e-47 |
| Msa0267790 | Msa1252260 | 0.803382 | 3.579772e-49 | -8.615850e-47 |
| Msa0269560 | Msa1252260 | 0.810305 | 1.231486e-50 | -8.615850e-47 |
| Msa0271550 | Msa1252260 | 0.811820 | 5.781986e-51 | -8.615850e-47 |
| Msa0281930 | Msa1252260 | 0.813085 | 3.060216e-51 | -8.615850e-47 |
| Msa0308460 | Msa1252260 | 0.806057 | 9.894186e-50 | -8.615850e-47 |
| Msa0317520 | Msa1252260 | 0.802176 | 6.350949e-49 | -8.615850e-47 |
| Msa0319290 | Msa1252260 | 0.810733 | 9.954545e-51 | -8.615850e-47 |
| Msa0321080 | Msa1252260 | 0.829082 | 6.280280e-55 | -8.615850e-47 |
| Msa0340340 | Msa1252260 | 0.805098 | 1.572475e-49 | -8.615850e-47 |
| Msa0357830 | Msa1252260 | 0.817446 | 3.284064e-52 | -8.615850e-47 |
| Msa0357840 | Msa1252260 | 0.811861 | 5.663615e-51 | -8.615850e-47 |
| Msa0363790 | Msa1252260 | 0.829748 | 4.326612e-55 | -8.615850e-47 |
| Msa1113170 | Msa1252260 | 0.800971 | 1.122033e-48 | -8.615850e-47 |
| Msa1121490 | Msa1252260 | 0.802170 | 6.371181e-49 | -8.615850e-47 |
| Msa1135470 | Msa1252260 | 0.805248 | 1.463033e-49 | -8.615850e-47 |
| Msa1162780 | Msa1252260 | 0.823854 | 1.106683e-53 | -8.615850e-47 |
| Msa1177560 | Msa1252260 | 0.801570 | 8.461203e-49 | -8.615850e-47 |
| Msa1185110 | Msa1252260 | 0.827798 | 1.282044e-54 | -8.615850e-47 |
| Msa1198770 | Msa1252260 | 0.915094 | 8.849361e-85 | -8.615850e-47 |
| Msa0506860 | Msa1252260 | 0.811258 | 7.660341e-51 | -8.615850e-47 |
| Msa0526070 | Msa1252260 | -0.846596 | 1.967067e-59 | -8.615850e-47 |
| Msa0574600 | Msa1252260 | 0.807697 | 4.452536e-50 | -8.615850e-47 |
| Msa0870830 | Msa1252260 | 0.824163 | 9.368685e-54 | -8.615850e-47 |
| Msa0894710 | Msa1252260 | 0.819259 | 1.275891e-52 | -8.615850e-47 |
| Msa0897330 | Msa1252260 | 0.808178 | 3.517987e-50 | -8.615850e-47 |
| Msa0898320 | Msa1252260 | 0.801572 | 8.450446e-49 | -8.615850e-47 |
| Msa0902830 | Msa1252260 | 0.813613 | 2.341999e-51 | -8.615850e-47 |
| Msa0903990 | Msa1252260 | 0.810300 | 1.234579e-50 | -8.615850e-47 |
| Msa0927310 | Msa1252260 | 0.819593 | 1.070327e-52 | -8.615850e-47 |
| Msa0936390 | Msa1252260 | 0.844221 | 8.646965e-59 | -8.615850e-47 |
| Msa0936530 | Msa1252260 | 0.821857 | 3.230778e-53 | -8.615850e-47 |
| Msa0943190 | Msa1252260 | 0.815339 | 9.723184e-52 | -8.615850e-47 |
| Msa0960390 | Msa1252260 | 0.803639 | 3.167530e-49 | -8.615850e-47 |
| Msa0965080 | Msa1252260 | 0.811309 | 7.467906e-51 | -8.615850e-47 |
| Msa0965290 | Msa1252260 | 0.816678 | 4.885401e-52 | -8.615850e-47 |
| Msa0969520 | Msa1252260 | 0.814888 | 1.224463e-51 | -8.615850e-47 |
| Msa0973520 | Msa1252260 | 0.816010 | 6.891815e-52 | -8.615850e-47 |
| Msa0973600 | Msa1252260 | 0.862280 | 5.665687e-64 | -8.615850e-47 |
| Msa0977200 | Msa1252260 | 0.807344 | 5.292878e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252260 | MtrunA17_Chr8g0368421 | 98.824 | 510 | 6 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1029 |
| Msa1252260 | MtrunA17_Chr4g0028551 | 61.759 | 489 | 185 | 2 | 18 | 506 | 38 | 524 | 0.0 | 645 |
| Msa1252260 | MtrunA17_Chr4g0028541 | 61.759 | 489 | 185 | 2 | 18 | 506 | 38 | 524 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252260 | AT1G12940.1 | 74.526 | 475 | 121 | 0 | 17 | 491 | 19 | 493 | 0.0 | 753 |
| Msa1252260 | AT1G08090.1 | 56.751 | 511 | 214 | 3 | 2 | 510 | 25 | 530 | 0.0 | 617 |
| Msa1252260 | AT5G60770.1 | 56.641 | 512 | 210 | 4 | 2 | 510 | 25 | 527 | 0.0 | 615 |
| Msa1252260 | AT1G08100.1 | 57.764 | 483 | 203 | 1 | 14 | 495 | 32 | 514 | 0.0 | 601 |
| Msa1252260 | AT3G45060.1 | 56.395 | 516 | 216 | 3 | 2 | 510 | 29 | 542 | 0.0 | 583 |
| Msa1252260 | AT5G60780.1 | 55.382 | 511 | 226 | 1 | 2 | 510 | 29 | 539 | 0.0 | 580 |
| Msa1252260 | AT5G14570.1 | 51.078 | 464 | 205 | 3 | 5 | 451 | 2 | 460 | 3.96e-170 | 489 |
Find 95 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGTTGCTTCTGTTTC+TGG | 0.017344 | 8_2:-49125162 | Msa1252260:CDS |
| TTCCAGCAGTGTGAAGTTTA+AGG | 0.193334 | 8_2:+49124097 | None:intergenic |
| GTAAATTTGTGTATCTTTAT+TGG | 0.193798 | 8_2:-49122454 | Msa1252260:three_prime_UTR |
| TGGTTTATTATCTGATTTAA+TGG | 0.218179 | 8_2:-49124025 | Msa1252260:CDS |
| GCTGCTTGTGGAATGACTTT+TGG | 0.252766 | 8_2:-49123859 | Msa1252260:CDS |
| TTGGAATGAGGGGTAGATTA+TGG | 0.258780 | 8_2:-49123993 | Msa1252260:CDS |
| GATTTAATGGCTAAGAGATT+TGG | 0.279825 | 8_2:-49124012 | Msa1252260:CDS |
| TTCACCACACTAACTAATTA+AGG | 0.284368 | 8_2:+49122306 | None:intergenic |
| TTGACTTATGGTTATTGTTT+TGG | 0.287818 | 8_2:-49124174 | Msa1252260:CDS |
| CACAGAAGAAGATTACTATT+TGG | 0.296738 | 8_2:-49122646 | Msa1252260:CDS |
| TCAGGTGGGTGGGGTAATCT+TGG | 0.299076 | 8_2:-49124459 | Msa1252260:intron |
| GGAATCATTGCTGCAAGTTT+TGG | 0.302049 | 8_2:-49124078 | Msa1252260:CDS |
| CATGATTGTGTTTCTTTGAT+TGG | 0.307065 | 8_2:+49125428 | None:intergenic |
| GGAAAATATATTAAGAATAA+TGG | 0.321070 | 8_2:+49122711 | None:intergenic |
| TTAAGGTTGTCACGAATTAT+AGG | 0.345703 | 8_2:+49125210 | None:intergenic |
| TATCATAGTTTGAAGAAATC+AGG | 0.346076 | 8_2:-49124270 | Msa1252260:CDS |
| TGTTGAGGTTGATTGGTTGA+TGG | 0.356794 | 8_2:+49125387 | None:intergenic |
| TGTGTGATCTTGGGACTTGT+TGG | 0.376700 | 8_2:-49123934 | Msa1252260:CDS |
| GGTGGGTGGGGTAATCTTGG+TGG | 0.379812 | 8_2:-49124456 | Msa1252260:CDS |
| AATGGGAACTGCTTGTGATT+TGG | 0.383228 | 8_2:-49125118 | Msa1252260:CDS |
| AACCTAACCGCAACGGATAT+AGG | 0.383713 | 8_2:-49125189 | Msa1252260:CDS |
| AACCTTAAACTTCACACTGC+TGG | 0.383716 | 8_2:-49124099 | Msa1252260:CDS |
| TCTTTGATTGGATAGGGCTA+TGG | 0.386380 | 8_2:+49125440 | None:intergenic |
| TTGTTGTTGTTGAGGTTGAT+TGG | 0.391111 | 8_2:+49125380 | None:intergenic |
| ATCCTTTGAAGAAAATTAGT+TGG | 0.392329 | 8_2:+49122796 | None:intergenic |
| AGAAAGAGGAATAACACTAA+TGG | 0.401498 | 8_2:-49122760 | Msa1252260:CDS |
| TATCCGTTGCGGTTAGGTTA+AGG | 0.405282 | 8_2:+49125193 | None:intergenic |
| CATGGTGTATTAAATTATAG+AGG | 0.408353 | 8_2:-49124210 | Msa1252260:CDS |
| GAAAGAGGAATAACACTAAT+GGG | 0.409564 | 8_2:-49122759 | Msa1252260:CDS |
| CTTTGATTGGATAGGGCTAT+GGG | 0.412462 | 8_2:+49125441 | None:intergenic |
| AAGATTACTATTTGGCTGAA+TGG | 0.421212 | 8_2:-49122638 | Msa1252260:CDS |
| TCTATTATCAATTCTCCTAC+TGG | 0.423158 | 8_2:-49125033 | Msa1252260:CDS |
| CTTCTTGTGAGGTTCTTCAC+TGG | 0.428270 | 8_2:-49125006 | Msa1252260:CDS |
| TGCTAGCATTTCATCTATCA+TGG | 0.442197 | 8_2:-49125284 | Msa1252260:CDS |
| GGTTGATTGGTTGATGGTGT+TGG | 0.446485 | 8_2:+49125393 | None:intergenic |
| TTCCTATATCCGTTGCGGTT+AGG | 0.449355 | 8_2:+49125187 | None:intergenic |
| TGTGTTTCTTTGATTGGATA+GGG | 0.450993 | 8_2:+49125434 | None:intergenic |
| ACTGTTGTTGGAAGAGCAAA+TGG | 0.454937 | 8_2:-49124925 | Msa1252260:CDS |
| AGATCCTTAGGAGTCATATC+AGG | 0.457901 | 8_2:-49122858 | Msa1252260:CDS |
| TCCTTTGAAGAAAATTAGTT+GGG | 0.459131 | 8_2:+49122797 | None:intergenic |
| GGCTAAGAGATTTGGAATGA+GGG | 0.467670 | 8_2:-49124004 | Msa1252260:CDS |
| GGGTGGGGTAATCTTGGTGG+AGG | 0.470487 | 8_2:-49124453 | Msa1252260:CDS |
| TGGATTTGTCAAACGTTGGC+TGG | 0.472815 | 8_2:-49123964 | Msa1252260:CDS |
| GGGGTAGATTATGGTGTTTG+TGG | 0.475044 | 8_2:-49123984 | Msa1252260:CDS |
| TATGGTTTCTCAGGTGGGTG+GGG | 0.476787 | 8_2:-49124468 | Msa1252260:intron |
| TGGCTAAGAGATTTGGAATG+AGG | 0.480994 | 8_2:-49124005 | Msa1252260:CDS |
| TTGTGTTTCTTTGATTGGAT+AGG | 0.482264 | 8_2:+49125433 | None:intergenic |
| TGCAACAAATTCAGATCCTT+AGG | 0.486150 | 8_2:-49122870 | Msa1252260:intron |
| AAACTATGATAATTACCATC+TGG | 0.492765 | 8_2:+49124282 | None:intergenic |
| ACATACCTTCTTGAGACAAA+AGG | 0.496721 | 8_2:+49123829 | None:intergenic |
| ATATGGTTTCTCAGGTGGGT+GGG | 0.498713 | 8_2:-49124469 | Msa1252260:intron |
| TTCAGCTATGATATTGTCAA+TGG | 0.501509 | 8_2:+49124140 | None:intergenic |
| CATTCCTGATATGACTCCTA+AGG | 0.505636 | 8_2:+49122854 | None:intergenic |
| GATAATAGTAGAAGTGAAAG+AGG | 0.507879 | 8_2:-49122564 | Msa1252260:CDS |
| GTTCAACAAAATTCACTGCA+TGG | 0.520686 | 8_2:-49124380 | Msa1252260:CDS |
| AACTCAAAGGAGAGGGAGAA+AGG | 0.520853 | 8_2:-49122615 | Msa1252260:CDS |
| TAAGGTGCATATTATGATCA+TGG | 0.523894 | 8_2:+49122734 | None:intergenic |
| GTGTATTAAATTATAGAGGG+TGG | 0.539300 | 8_2:-49124206 | Msa1252260:CDS |
| GGAGTCATATCAGGAATGAC+AGG | 0.542118 | 8_2:-49122849 | Msa1252260:CDS |
| TTTGGTCAAGATTTACCAGA+TGG | 0.543573 | 8_2:-49124297 | Msa1252260:CDS |
| CATTCCTTAATTAGTTAGTG+TGG | 0.545006 | 8_2:-49122310 | Msa1252260:three_prime_UTR |
| TCAGGAATGACAGGAGGAGG+AGG | 0.547520 | 8_2:-49122840 | Msa1252260:CDS |
| CTGAATGGAACTCAAAGGAG+AGG | 0.547602 | 8_2:-49122623 | Msa1252260:CDS |
| GGAACTGCTTGTGATTTGGT+TGG | 0.550581 | 8_2:-49125114 | Msa1252260:CDS |
| CCTCTCAATTTGTAATACAA+AGG | 0.556729 | 8_2:-49122336 | Msa1252260:three_prime_UTR |
| CTTTGTATTACAAATTGAGA+GGG | 0.559908 | 8_2:+49122337 | None:intergenic |
| AATATGGTTTCTCAGGTGGG+TGG | 0.562582 | 8_2:-49124470 | Msa1252260:intron |
| GCAACGGATATAGGAAATGC+TGG | 0.563728 | 8_2:-49125180 | Msa1252260:CDS |
| ATATCAGGAATGACAGGAGG+AGG | 0.569761 | 8_2:-49122843 | Msa1252260:CDS |
| GAAAATTGAACATTTCAACT+AGG | 0.570170 | 8_2:-49122539 | Msa1252260:CDS |
| TCAGATAATAAACCACCTCC+AGG | 0.570484 | 8_2:+49124033 | None:intergenic |
| AAACTGAGTAGAAACAAAAG+TGG | 0.576179 | 8_2:+49124972 | None:intergenic |
| ATATATTAAGAATAATGGTA+AGG | 0.576979 | 8_2:+49122716 | None:intergenic |
| CCTTTGTATTACAAATTGAG+AGG | 0.583417 | 8_2:+49122336 | None:intergenic |
| ATAGAAGTGAAGTAAACAGC+AGG | 0.585810 | 8_2:+49125051 | None:intergenic |
| AGCATTTCCTATATCCGTTG+CGG | 0.587885 | 8_2:+49125182 | None:intergenic |
| ATTTCAAAAGTAATTTACCA+TGG | 0.589099 | 8_2:-49124228 | Msa1252260:CDS |
| TTTGTGGATTTGTCAAACGT+TGG | 0.593191 | 8_2:-49123968 | Msa1252260:CDS |
| TGTATAAGTGAAAACACAAG+TGG | 0.596710 | 8_2:+49124411 | None:intergenic |
| ATGGTGTATTAAATTATAGA+GGG | 0.598131 | 8_2:-49124209 | Msa1252260:CDS |
| GCTAAGAGATTTGGAATGAG+GGG | 0.599275 | 8_2:-49124003 | Msa1252260:CDS |
| AATAGTAGAAGTGAAAGAGG+TGG | 0.601395 | 8_2:-49122561 | Msa1252260:CDS |
| TGAATGGAACTCAAAGGAGA+GGG | 0.609630 | 8_2:-49122622 | Msa1252260:CDS |
| ACAGGAGGAGGAGGAAACGT+AGG | 0.617640 | 8_2:-49122831 | Msa1252260:CDS |
| CTCTATAATTTAATACACCA+TGG | 0.620348 | 8_2:+49124211 | None:intergenic |
| TTTGGCTGAATGGAACTCAA+AGG | 0.622357 | 8_2:-49122628 | Msa1252260:CDS |
| TCTTTAGTTACATATTCACA+TGG | 0.624824 | 8_2:-49122406 | Msa1252260:three_prime_UTR |
| GTCATATCAGGAATGACAGG+AGG | 0.646603 | 8_2:-49122846 | Msa1252260:CDS |
| CAACCTTAACCTAACCGCAA+CGG | 0.647934 | 8_2:-49125196 | Msa1252260:CDS |
| AGATGAAATGCTAGCATGTG+AGG | 0.648457 | 8_2:+49125291 | None:intergenic |
| GGTGGTGTAACATCTTCAGA+AGG | 0.661089 | 8_2:+49122516 | None:intergenic |
| TCACGAATTATAGGAACAAG+CGG | 0.666070 | 8_2:+49125219 | None:intergenic |
| AAAGCAGCAGAAGCAAGACG+AGG | 0.678632 | 8_2:+49125090 | None:intergenic |
| ATTTGCTCTTCCAACAACAG+TGG | 0.700274 | 8_2:+49124927 | None:intergenic |
| CTCACAAGAAGAAAACCAGT+AGG | 0.723236 | 8_2:+49125018 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATATGAATAAATT+TGG | + | chr8_2:49123033-49123052 | None:intergenic | 10.0% |
| !!! | TATTTATTTTGCTTAAAATA+TGG | - | chr8_2:49123274-49123293 | Msa1252260:intron | 10.0% |
| !!! | AAATTTGTTCATATTGAAAT+CGG | + | chr8_2:49123126-49123145 | None:intergenic | 15.0% |
| !!! | TAAAATAATGACATTTTTAC+TGG | - | chr8_2:49123203-49123222 | Msa1252260:intron | 15.0% |
| !!! | GCATTTTCAATTTTAATATT+TGG | - | chr8_2:49123445-49123464 | Msa1252260:intron | 15.0% |
| !! | TTAAAAGAATGAAAAATGAA+AGG | + | chr8_2:49123959-49123978 | None:intergenic | 15.0% |
| !! | ATATATTAAGAATAATGGTA+AGG | + | chr8_2:49125047-49125066 | None:intergenic | 15.0% |
| !! | GGAAAATATATTAAGAATAA+TGG | + | chr8_2:49125052-49125071 | None:intergenic | 15.0% |
| !!! | TAAAAAAATCAAACATTTTG+TGG | + | chr8_2:49125268-49125287 | None:intergenic | 15.0% |
| !!! | CATTTATTTAACTCTTTTGA+AGG | - | chr8_2:49122888-49122907 | Msa1252260:intron | 20.0% |
| !!! | TTTTCACTTATACAAGATTT+TGG | - | chr8_2:49123358-49123377 | Msa1252260:intron | 20.0% |
| !! | ATTTCAAAAGTAATTTACCA+TGG | - | chr8_2:49123532-49123551 | Msa1252260:intron | 20.0% |
| !! | ATGGTGTATTAAATTATAGA+GGG | - | chr8_2:49123551-49123570 | Msa1252260:intron | 20.0% |
| !! | TGGTTTATTATCTGATTTAA+TGG | - | chr8_2:49123735-49123754 | Msa1252260:intron | 20.0% |
| !!! | TTATGAGTTTTATTGAATCT+GGG | + | chr8_2:49124069-49124088 | None:intergenic | 20.0% |
| !! | AATAAAACTCATAACACTTA+AGG | - | chr8_2:49124075-49124094 | Msa1252260:CDS | 20.0% |
| !!! | TTATGGTATTGAATAACTTT+TGG | - | chr8_2:49124172-49124191 | Msa1252260:CDS | 20.0% |
| !!! | TTTGATTTGCTAAAAAATGA+AGG | + | chr8_2:49124404-49124423 | None:intergenic | 20.0% |
| !!! | TCTATTGATTAAACTAACTA+TGG | + | chr8_2:49124548-49124567 | None:intergenic | 20.0% |
| !! | AAATTAAGCCATTAAATTTG+TGG | + | chr8_2:49124683-49124702 | None:intergenic | 20.0% |
| !!! | TCTTAATATATTTTCCACAA+TGG | - | chr8_2:49125056-49125075 | Msa1252260:CDS | 20.0% |
| !!! | CTTAATATATTTTCCACAAT+GGG | - | chr8_2:49125057-49125076 | Msa1252260:CDS | 20.0% |
| !!! | TTAATATATTTTCCACAATG+GGG | - | chr8_2:49125058-49125077 | Msa1252260:CDS | 20.0% |
| !! | GTAAATTTGTGTATCTTTAT+TGG | - | chr8_2:49125306-49125325 | Msa1252260:CDS | 20.0% |
| !! | ATGAAAAAACTAATGAGTAA+CGG | + | chr8_2:49125480-49125499 | None:intergenic | 20.0% |
| !!! | TGATTTGTTTTCTGAATCTA+CGG | + | chr8_2:49122419-49122438 | None:intergenic | 25.0% |
| !!! | TATTGAGTGGATTTTGAATA+TGG | + | chr8_2:49122443-49122462 | None:intergenic | 25.0% |
| !! | AATATGAACAAATTTTACCG+TGG | - | chr8_2:49123131-49123150 | Msa1252260:intron | 25.0% |
| !!! | TTGTTGTTTTGTTTTATCCA+CGG | + | chr8_2:49123151-49123170 | None:intergenic | 25.0% |
| ! | AAACTATGATAATTACCATC+TGG | + | chr8_2:49123481-49123500 | None:intergenic | 25.0% |
| ! | TATCATAGTTTGAAGAAATC+AGG | - | chr8_2:49123490-49123509 | Msa1252260:intron | 25.0% |
| ! | CTCTATAATTTAATACACCA+TGG | + | chr8_2:49123552-49123571 | None:intergenic | 25.0% |
| ! | CATGGTGTATTAAATTATAG+AGG | - | chr8_2:49123550-49123569 | Msa1252260:intron | 25.0% |
| !! | TTGACTTATGGTTATTGTTT+TGG | - | chr8_2:49123586-49123605 | Msa1252260:intron | 25.0% |
| !!! | GTTATGAGTTTTATTGAATC+TGG | + | chr8_2:49124070-49124089 | None:intergenic | 25.0% |
| ! | AAATAGAACAGCACAATATA+AGG | - | chr8_2:49124127-49124146 | Msa1252260:CDS | 25.0% |
| !!! | TGGTCTTATACAATTTTTTG+TGG | - | chr8_2:49124192-49124211 | Msa1252260:CDS | 25.0% |
| ! | TAAAAAATGAAGGATAGGAT+TGG | + | chr8_2:49124394-49124413 | None:intergenic | 25.0% |
| ! | TTTGCTAAAAAATGAAGGAT+AGG | + | chr8_2:49124399-49124418 | None:intergenic | 25.0% |
| !!! | AACTAACTTGTTCAACTTAA+GGG | + | chr8_2:49124431-49124450 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTGTTTATTAATG+AGG | + | chr8_2:49124662-49124681 | None:intergenic | 25.0% |
| ! | CAAAAGAACCACAAATTTAA+TGG | - | chr8_2:49124672-49124691 | Msa1252260:intron | 25.0% |
| ! | TGAAAGAAAAACTTGTAACA+CGG | - | chr8_2:49124780-49124799 | Msa1252260:intron | 25.0% |
| !! | TCCTTTGAAGAAAATTAGTT+GGG | + | chr8_2:49124966-49124985 | None:intergenic | 25.0% |
| !! | ATCCTTTGAAGAAAATTAGT+TGG | + | chr8_2:49124967-49124986 | None:intergenic | 25.0% |
| !! | TCAAGATTTTCAAAAGAAAG+AGG | - | chr8_2:49124986-49125005 | Msa1252260:CDS | 25.0% |
| ! | GAAAATTGAACATTTCAACT+AGG | - | chr8_2:49125221-49125240 | Msa1252260:CDS | 25.0% |
| !! | AAAAATCAAACATTTTGTGG+TGG | + | chr8_2:49125265-49125284 | None:intergenic | 25.0% |
| ! | TCTTTAGTTACATATTCACA+TGG | - | chr8_2:49125354-49125373 | Msa1252260:CDS | 25.0% |
| ! | CTTTGTATTACAAATTGAGA+GGG | + | chr8_2:49125426-49125445 | None:intergenic | 25.0% |
| TGTGTTTCTTTGATTGGATA+GGG | + | chr8_2:49122329-49122348 | None:intergenic | 30.0% | |
| TTGTGTTTCTTTGATTGGAT+AGG | + | chr8_2:49122330-49122349 | None:intergenic | 30.0% | |
| CATGATTGTGTTTCTTTGAT+TGG | + | chr8_2:49122335-49122354 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTTGTTGTTGTTG+AGG | + | chr8_2:49122391-49122410 | None:intergenic | 30.0% |
| !! | ATTTGTTTTCTGAATCTACG+GGG | + | chr8_2:49122417-49122436 | None:intergenic | 30.0% |
| !! | GATTTGTTTTCTGAATCTAC+GGG | + | chr8_2:49122418-49122437 | None:intergenic | 30.0% |
| TTAAGGTTGTCACGAATTAT+AGG | + | chr8_2:49122553-49122572 | None:intergenic | 30.0% | |
| !! | TGTTTTTGCAAGAATTGCAA+TGG | - | chr8_2:49122624-49122643 | Msa1252260:CDS | 30.0% |
| ! | GTTTTTGCAAGAATTGCAAT+GGG | - | chr8_2:49122625-49122644 | Msa1252260:CDS | 30.0% |
| TCTATTATCAATTCTCCTAC+TGG | - | chr8_2:49122727-49122746 | Msa1252260:CDS | 30.0% | |
| AAACTGAGTAGAAACAAAAG+TGG | + | chr8_2:49122791-49122810 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTTCTACTCAGTTT+TGG | - | chr8_2:49122791-49122810 | Msa1252260:CDS | 30.0% |
| TGCTTAAAATATGGTTTCTC+AGG | - | chr8_2:49123283-49123302 | Msa1252260:intron | 30.0% | |
| TTAAAATATGGTTTCTCAGG+TGG | - | chr8_2:49123286-49123305 | Msa1252260:intron | 30.0% | |
| TAAAATATGGTTTCTCAGGT+GGG | - | chr8_2:49123287-49123306 | Msa1252260:intron | 30.0% | |
| TGTATAAGTGAAAACACAAG+TGG | + | chr8_2:49123352-49123371 | None:intergenic | 30.0% | |
| TCATAGATTGCAAAAATGCT+GGG | + | chr8_2:49123423-49123442 | None:intergenic | 30.0% | |
| GTGTATTAAATTATAGAGGG+TGG | - | chr8_2:49123554-49123573 | Msa1252260:intron | 30.0% | |
| !!! | TGGATTTTAGCTTTGACTTA+TGG | - | chr8_2:49123574-49123593 | Msa1252260:intron | 30.0% |
| !!! | TTATGGTTATTGTTTTGGTG+TGG | - | chr8_2:49123591-49123610 | Msa1252260:intron | 30.0% |
| TTCAGCTATGATATTGTCAA+TGG | + | chr8_2:49123623-49123642 | None:intergenic | 30.0% | |
| GATTTAATGGCTAAGAGATT+TGG | - | chr8_2:49123748-49123767 | Msa1252260:intron | 30.0% | |
| ! | GAGTACGTGACAAATTTTTA+TGG | - | chr8_2:49124155-49124174 | Msa1252260:CDS | 30.0% |
| !! | CAACTAACTTGTTCAACTTA+AGG | + | chr8_2:49124432-49124451 | None:intergenic | 30.0% |
| TAAACTAACTATGGATCGAA+TGG | + | chr8_2:49124539-49124558 | None:intergenic | 30.0% | |
| ! | TGAGGTTAATCTCATTTTCA+AGG | + | chr8_2:49124644-49124663 | None:intergenic | 30.0% |
| TCATCCTTATGAGACTTAAT+TGG | - | chr8_2:49124734-49124753 | Msa1252260:intron | 30.0% | |
| TCATTTCTCAAATACCAACT+AGG | + | chr8_2:49124763-49124782 | None:intergenic | 30.0% | |
| ! | ACCCAACTAATTTTCTTCAA+AGG | - | chr8_2:49124962-49124981 | Msa1252260:CDS | 30.0% |
| AGAAAGAGGAATAACACTAA+TGG | - | chr8_2:49125000-49125019 | Msa1252260:CDS | 30.0% | |
| GAAAGAGGAATAACACTAAT+GGG | - | chr8_2:49125001-49125020 | Msa1252260:CDS | 30.0% | |
| TAAGGTGCATATTATGATCA+TGG | + | chr8_2:49125029-49125048 | None:intergenic | 30.0% | |
| CACAGAAGAAGATTACTATT+TGG | - | chr8_2:49125114-49125133 | Msa1252260:CDS | 30.0% | |
| AAGATTACTATTTGGCTGAA+TGG | - | chr8_2:49125122-49125141 | Msa1252260:CDS | 30.0% | |
| GATAATAGTAGAAGTGAAAG+AGG | - | chr8_2:49125196-49125215 | Msa1252260:CDS | 30.0% | |
| CCTTTGTATTACAAATTGAG+AGG | + | chr8_2:49125427-49125446 | None:intergenic | 30.0% | |
| CCTCTCAATTTGTAATACAA+AGG | - | chr8_2:49125424-49125443 | Msa1252260:exon | 30.0% | |
| CATTCCTTAATTAGTTAGTG+TGG | - | chr8_2:49125450-49125469 | Msa1252260:five_prime_UTR | 30.0% | |
| TTCACCACACTAACTAATTA+AGG | + | chr8_2:49125457-49125476 | None:intergenic | 30.0% | |
| !!! | GGGAGTTTTGATTTGTGTTA+AGG | + | chr8_2:49122302-49122321 | None:intergenic | 35.0% |
| ! | TTGTTGTTGTTGAGGTTGAT+TGG | + | chr8_2:49122383-49122402 | None:intergenic | 35.0% |
| TGCTAGCATTTCATCTATCA+TGG | - | chr8_2:49122476-49122495 | Msa1252260:three_prime_UTR | 35.0% | |
| TCACGAATTATAGGAACAAG+CGG | + | chr8_2:49122544-49122563 | None:intergenic | 35.0% | |
| ATAGAAGTGAAGTAAACAGC+AGG | + | chr8_2:49122712-49122731 | None:intergenic | 35.0% | |
| ! | ATGTTTTCTACCACTGTTGT+TGG | - | chr8_2:49122823-49122842 | Msa1252260:CDS | 35.0% |
| GTTCAACAAAATTCACTGCA+TGG | - | chr8_2:49123380-49123399 | Msa1252260:intron | 35.0% | |
| GTCATAGATTGCAAAAATGC+TGG | + | chr8_2:49123424-49123443 | None:intergenic | 35.0% | |
| TTTGGTCAAGATTTACCAGA+TGG | - | chr8_2:49123463-49123482 | Msa1252260:intron | 35.0% | |
| !!! | GCTAATGTTTTTTCAAGACC+TGG | - | chr8_2:49123709-49123728 | Msa1252260:intron | 35.0% |
| !!! | AATGTTTTTTCAAGACCTGG+AGG | - | chr8_2:49123712-49123731 | Msa1252260:intron | 35.0% |
| TTTGTGGATTTGTCAAACGT+TGG | - | chr8_2:49123792-49123811 | Msa1252260:intron | 35.0% | |
| !!! | TGGTGTTTTTTGTGTGATCT+TGG | - | chr8_2:49123816-49123835 | Msa1252260:intron | 35.0% |
| !!! | GGTGTTTTTTGTGTGATCTT+GGG | - | chr8_2:49123817-49123836 | Msa1252260:intron | 35.0% |
| ! | TTGTTCCTTTTGTCTCAAGA+AGG | - | chr8_2:49123926-49123945 | Msa1252260:CDS | 35.0% |
| ACATACCTTCTTGAGACAAA+AGG | + | chr8_2:49123934-49123953 | None:intergenic | 35.0% | |
| ! | ACATCACAACTTTTTGTCAC+AGG | + | chr8_2:49124253-49124272 | None:intergenic | 35.0% |
| TGTGACAAAAAGTTGTGATG+TGG | - | chr8_2:49124252-49124271 | Msa1252260:CDS | 35.0% | |
| CAAAAAGTTGTGATGTGGTT+TGG | - | chr8_2:49124257-49124276 | Msa1252260:CDS | 35.0% | |
| TTCAGTTTGTCCTGTCTTTA+GGG | - | chr8_2:49124319-49124338 | Msa1252260:CDS | 35.0% | |
| GTCTCCAATTAAGTCTCATA+AGG | + | chr8_2:49124741-49124760 | None:intergenic | 35.0% | |
| TGCAACAAATTCAGATCCTT+AGG | - | chr8_2:49124890-49124909 | Msa1252260:intron | 35.0% | |
| ! | ATATATTTTCCACAATGGGG+TGG | - | chr8_2:49125061-49125080 | Msa1252260:CDS | 35.0% |
| ! | TCTGTGACTTTTGTAGATGA+TGG | + | chr8_2:49125100-49125119 | None:intergenic | 35.0% |
| AATAGTAGAAGTGAAAGAGG+TGG | - | chr8_2:49125199-49125218 | Msa1252260:CDS | 35.0% | |
| CTTTGATTGGATAGGGCTAT+GGG | + | chr8_2:49122322-49122341 | None:intergenic | 40.0% | |
| TCTTTGATTGGATAGGGCTA+TGG | + | chr8_2:49122323-49122342 | None:intergenic | 40.0% | |
| ! | TGTTGAGGTTGATTGGTTGA+TGG | + | chr8_2:49122376-49122395 | None:intergenic | 40.0% |
| !!! | TGTGAGGTTTTGCTATTGAG+TGG | + | chr8_2:49122456-49122475 | None:intergenic | 40.0% |
| AGATGAAATGCTAGCATGTG+AGG | + | chr8_2:49122472-49122491 | None:intergenic | 40.0% | |
| AGCATTTCCTATATCCGTTG+CGG | + | chr8_2:49122581-49122600 | None:intergenic | 40.0% | |
| AATGGGAACTGCTTGTGATT+TGG | - | chr8_2:49122642-49122661 | Msa1252260:CDS | 40.0% | |
| CTCACAAGAAGAAAACCAGT+AGG | + | chr8_2:49122745-49122764 | None:intergenic | 40.0% | |
| !!! | CTACTGGTTTTCTTCTTGTG+AGG | - | chr8_2:49122743-49122762 | Msa1252260:CDS | 40.0% |
| ATTTGCTCTTCCAACAACAG+TGG | + | chr8_2:49122836-49122855 | None:intergenic | 40.0% | |
| ACTGTTGTTGGAAGAGCAAA+TGG | - | chr8_2:49122835-49122854 | Msa1252260:CDS | 40.0% | |
| ! | GGAAGAGCAAATGGTTTTTC+AGG | - | chr8_2:49122844-49122863 | Msa1252260:CDS | 40.0% |
| AACCTTAAACTTCACACTGC+TGG | - | chr8_2:49123661-49123680 | Msa1252260:intron | 40.0% | |
| TTCCAGCAGTGTGAAGTTTA+AGG | + | chr8_2:49123666-49123685 | None:intergenic | 40.0% | |
| ! | GGAATCATTGCTGCAAGTTT+TGG | - | chr8_2:49123682-49123701 | Msa1252260:intron | 40.0% |
| !!! | CATTGCTGCAAGTTTTGGTT+TGG | - | chr8_2:49123687-49123706 | Msa1252260:intron | 40.0% |
| TCAGATAATAAACCACCTCC+AGG | + | chr8_2:49123730-49123749 | None:intergenic | 40.0% | |
| ! | TGGCTAAGAGATTTGGAATG+AGG | - | chr8_2:49123755-49123774 | Msa1252260:intron | 40.0% |
| ! | GGCTAAGAGATTTGGAATGA+GGG | - | chr8_2:49123756-49123775 | Msa1252260:intron | 40.0% |
| ! | GCTAAGAGATTTGGAATGAG+GGG | - | chr8_2:49123757-49123776 | Msa1252260:intron | 40.0% |
| TTGGAATGAGGGGTAGATTA+TGG | - | chr8_2:49123767-49123786 | Msa1252260:intron | 40.0% | |
| ! | GTTTTTGTTCAAGCTGCTTG+TGG | - | chr8_2:49123889-49123908 | Msa1252260:CDS | 40.0% |
| CTAAAGACAGGACAAACTGA+AGG | + | chr8_2:49124320-49124339 | None:intergenic | 40.0% | |
| CTTCAGTTTGTCCTGTCTTT+AGG | - | chr8_2:49124318-49124337 | Msa1252260:CDS | 40.0% | |
| TTAAAGACAGCCCTAAAGAC+AGG | + | chr8_2:49124332-49124351 | None:intergenic | 40.0% | |
| AGTGCTCATTACACTGTCAA+TGG | - | chr8_2:49124614-49124633 | Msa1252260:intron | 40.0% | |
| GACTTAATTGGAGACCTAGT+TGG | - | chr8_2:49124746-49124765 | Msa1252260:intron | 40.0% | |
| AGATCCTTAGGAGTCATATC+AGG | - | chr8_2:49124902-49124921 | Msa1252260:intron | 40.0% | |
| CATTCCTGATATGACTCCTA+AGG | + | chr8_2:49124909-49124928 | None:intergenic | 40.0% | |
| TTTGGCTGAATGGAACTCAA+AGG | - | chr8_2:49125132-49125151 | Msa1252260:CDS | 40.0% | |
| TGAATGGAACTCAAAGGAGA+GGG | - | chr8_2:49125138-49125157 | Msa1252260:CDS | 40.0% | |
| !! | GGTTGATTGGTTGATGGTGT+TGG | + | chr8_2:49122370-49122389 | None:intergenic | 45.0% |
| CAACCTTAACCTAACCGCAA+CGG | - | chr8_2:49122564-49122583 | Msa1252260:CDS | 45.0% | |
| TATCCGTTGCGGTTAGGTTA+AGG | + | chr8_2:49122570-49122589 | None:intergenic | 45.0% | |
| AACCTAACCGCAACGGATAT+AGG | - | chr8_2:49122571-49122590 | Msa1252260:CDS | 45.0% | |
| TTCCTATATCCGTTGCGGTT+AGG | + | chr8_2:49122576-49122595 | None:intergenic | 45.0% | |
| GCAACGGATATAGGAAATGC+TGG | - | chr8_2:49122580-49122599 | Msa1252260:CDS | 45.0% | |
| !! | GGAACTGCTTGTGATTTGGT+TGG | - | chr8_2:49122646-49122665 | Msa1252260:CDS | 45.0% |
| CTTCTTGTGAGGTTCTTCAC+TGG | - | chr8_2:49122754-49122773 | Msa1252260:CDS | 45.0% | |
| AATATGGTTTCTCAGGTGGG+TGG | - | chr8_2:49123290-49123309 | Msa1252260:intron | 45.0% | |
| ATATGGTTTCTCAGGTGGGT+GGG | - | chr8_2:49123291-49123310 | Msa1252260:intron | 45.0% | |
| !!! | GTTTTTTCAAGACCTGGAGG+TGG | - | chr8_2:49123715-49123734 | Msa1252260:intron | 45.0% |
| GGGGTAGATTATGGTGTTTG+TGG | - | chr8_2:49123776-49123795 | Msa1252260:intron | 45.0% | |
| TGGATTTGTCAAACGTTGGC+TGG | - | chr8_2:49123796-49123815 | Msa1252260:intron | 45.0% | |
| TGTGTGATCTTGGGACTTGT+TGG | - | chr8_2:49123826-49123845 | Msa1252260:intron | 45.0% | |
| ! | GCTGCTTGTGGAATGACTTT+TGG | - | chr8_2:49123901-49123920 | Msa1252260:CDS | 45.0% |
| !!! | TGGGTTCGAATTTTGACTCG+AGG | + | chr8_2:49124050-49124069 | None:intergenic | 45.0% |
| ACAGGACAAACTGAAGGCAA+GGG | + | chr8_2:49124314-49124333 | None:intergenic | 45.0% | |
| GGAGTCATATCAGGAATGAC+AGG | - | chr8_2:49124911-49124930 | Msa1252260:intron | 45.0% | |
| GTCATATCAGGAATGACAGG+AGG | - | chr8_2:49124914-49124933 | Msa1252260:intron | 45.0% | |
| ATATCAGGAATGACAGGAGG+AGG | - | chr8_2:49124917-49124936 | Msa1252260:CDS | 45.0% | |
| AAAAACATGCCACCCCATTG+TGG | + | chr8_2:49125073-49125092 | None:intergenic | 45.0% | |
| !!! | CAATGGGGTGGCATGTTTTT+TGG | - | chr8_2:49125073-49125092 | Msa1252260:CDS | 45.0% |
| CTGAATGGAACTCAAAGGAG+AGG | - | chr8_2:49125137-49125156 | Msa1252260:CDS | 45.0% | |
| AACTCAAAGGAGAGGGAGAA+AGG | - | chr8_2:49125145-49125164 | Msa1252260:CDS | 45.0% | |
| GGTGGTGTAACATCTTCAGA+AGG | + | chr8_2:49125247-49125266 | None:intergenic | 45.0% | |
| !! | TAAAAAATGATATATTTATA+TGG | + | chr8_2:49122977-49122996 | None:intergenic | 5.0% |
| !! | GCTGGTGTTGCTTCTGTTTC+TGG | - | chr8_2:49122598-49122617 | Msa1252260:CDS | 50.0% |
| AAAGCAGCAGAAGCAAGACG+AGG | + | chr8_2:49122673-49122692 | None:intergenic | 50.0% | |
| TATGGTTTCTCAGGTGGGTG+GGG | - | chr8_2:49123292-49123311 | Msa1252260:intron | 50.0% | |
| ACAAACTGAAGGCAAGGGAC+AGG | + | chr8_2:49124309-49124328 | None:intergenic | 50.0% | |
| GACAGGACAAACTGAAGGCA+AGG | + | chr8_2:49124315-49124334 | None:intergenic | 50.0% | |
| TCAGGTGGGTGGGGTAATCT+TGG | - | chr8_2:49123301-49123320 | Msa1252260:intron | 55.0% | |
| TCAGGAATGACAGGAGGAGG+AGG | - | chr8_2:49124920-49124939 | Msa1252260:CDS | 55.0% | |
| ACAGGAGGAGGAGGAAACGT+AGG | - | chr8_2:49124929-49124948 | Msa1252260:CDS | 55.0% | |
| GGTGGGTGGGGTAATCTTGG+TGG | - | chr8_2:49123304-49123323 | Msa1252260:intron | 60.0% | |
| GGGTGGGGTAATCTTGGTGG+AGG | - | chr8_2:49123307-49123326 | Msa1252260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 49122280 | 49125502 | 49122280 | ID=Msa1252260;Name=Msa1252260 |
| chr8_2 | mRNA | 49122280 | 49125502 | 49122280 | ID=Msa1252260-mRNA-1;Parent=Msa1252260;Name=Msa1252260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=72|1|1|1|1|1|3|223|510 |
| chr8_2 | exon | 49122280 | 49122878 | 49122280 | ID=Msa1252260-mRNA-1:exon:14873;Parent=Msa1252260-mRNA-1 |
| chr8_2 | exon | 49123835 | 49124477 | 49123835 | ID=Msa1252260-mRNA-1:exon:14872;Parent=Msa1252260-mRNA-1 |
| chr8_2 | exon | 49124917 | 49125502 | 49124917 | ID=Msa1252260-mRNA-1:exon:14871;Parent=Msa1252260-mRNA-1 |
| chr8_2 | five_prime_UTR | 49125431 | 49125502 | 49125431 | ID=Msa1252260-mRNA-1:five_prime_utr;Parent=Msa1252260-mRNA-1 |
| chr8_2 | CDS | 49124917 | 49125430 | 49124917 | ID=Msa1252260-mRNA-1:cds;Parent=Msa1252260-mRNA-1 |
| chr8_2 | CDS | 49123835 | 49124477 | 49123835 | ID=Msa1252260-mRNA-1:cds;Parent=Msa1252260-mRNA-1 |
| chr8_2 | CDS | 49122503 | 49122878 | 49122503 | ID=Msa1252260-mRNA-1:cds;Parent=Msa1252260-mRNA-1 |
| chr8_2 | three_prime_UTR | 49122280 | 49122502 | 49122280 | ID=Msa1252260-mRNA-1:three_prime_utr;Parent=Msa1252260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
