Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233080 | XP_003589014.1 | 83.065 | 248 | 26 | 3 | 1 | 233 | 1 | 247 | 6.43e-137 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233080 | sp|Q9FFJ8|LIMYB_ARATH | 35.052 | 97 | 62 | 1 | 20 | 116 | 2 | 97 | 1.77e-13 | 72.4 |
| Msa0233080 | sp|Q9FFJ8|LIMYB_ARATH | 29.412 | 153 | 91 | 3 | 6 | 147 | 156 | 302 | 2.04e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233080 | G7IB81 | 83.065 | 248 | 26 | 3 | 1 | 233 | 1 | 247 | 3.07e-137 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0233080 | 0.817848 | 2.664718e-52 | -8.615850e-47 |
| Msa0015390 | Msa0233080 | 0.800673 | 1.290992e-48 | -8.615850e-47 |
| Msa0026450 | Msa0233080 | 0.806458 | 8.147932e-50 | -8.615850e-47 |
| Msa0031520 | Msa0233080 | 0.813667 | 2.279249e-51 | -8.615850e-47 |
| Msa0036920 | Msa0233080 | 0.805314 | 1.417530e-49 | -8.615850e-47 |
| Msa0042920 | Msa0233080 | 0.829158 | 6.020679e-55 | -8.615850e-47 |
| Msa0044260 | Msa0233080 | 0.809781 | 1.597237e-50 | -8.615850e-47 |
| Msa0044330 | Msa0233080 | 0.812273 | 4.606385e-51 | -8.615850e-47 |
| Msa0105070 | Msa0233080 | 0.814413 | 1.560037e-51 | -8.615850e-47 |
| Msa0107580 | Msa0233080 | 0.808864 | 2.511111e-50 | -8.615850e-47 |
| Msa0114060 | Msa0233080 | 0.811781 | 5.895252e-51 | -8.615850e-47 |
| Msa0117710 | Msa0233080 | 0.807508 | 4.885477e-50 | -8.615850e-47 |
| Msa0120300 | Msa0233080 | 0.803603 | 3.222523e-49 | -8.615850e-47 |
| Msa0130970 | Msa0233080 | 0.809789 | 1.590697e-50 | -8.615850e-47 |
| Msa0131770 | Msa0233080 | 0.816621 | 5.032938e-52 | -8.615850e-47 |
| Msa0135660 | Msa0233080 | 0.889588 | 2.118078e-73 | -8.615850e-47 |
| Msa0142220 | Msa0233080 | 0.828547 | 8.459317e-55 | -8.615850e-47 |
| Msa0145260 | Msa0233080 | 0.808788 | 2.606730e-50 | -8.615850e-47 |
| Msa0153910 | Msa0233080 | 0.805259 | 1.455307e-49 | -8.615850e-47 |
| Msa0158480 | Msa0233080 | 0.800251 | 1.572904e-48 | -8.615850e-47 |
| Msa0188460 | Msa0233080 | 0.803870 | 2.836307e-49 | -8.615850e-47 |
| Msa0190530 | Msa0233080 | 0.806250 | 9.011950e-50 | -8.615850e-47 |
| Msa0198910 | Msa0233080 | 0.879633 | 1.062449e-69 | -8.615850e-47 |
| Msa0204840 | Msa0233080 | 0.814315 | 1.639978e-51 | -8.615850e-47 |
| Msa0215320 | Msa0233080 | -0.803593 | 3.237370e-49 | -8.615850e-47 |
| Msa0227480 | Msa0233080 | 0.809748 | 1.622890e-50 | -8.615850e-47 |
| Msa0229590 | Msa0233080 | 0.814137 | 1.795214e-51 | -8.615850e-47 |
| Msa0233080 | Msa0233300 | 0.815912 | 7.247895e-52 | -8.615850e-47 |
| Msa0233080 | Msa0251320 | 0.836506 | 8.990012e-57 | -8.615850e-47 |
| Msa0233080 | Msa0251640 | 0.884969 | 1.217615e-71 | -8.615850e-47 |
| Msa0233080 | Msa0273100 | 0.834409 | 3.048401e-56 | -8.615850e-47 |
| Msa0233080 | Msa0278190 | 0.808044 | 3.757272e-50 | -8.615850e-47 |
| Msa0233080 | Msa0285450 | 0.812040 | 5.179191e-51 | -8.615850e-47 |
| Msa0233080 | Msa0305190 | 0.832226 | 1.066927e-55 | -8.615850e-47 |
| Msa0233080 | Msa0306210 | -0.800746 | 1.247360e-48 | -8.615850e-47 |
| Msa0233080 | Msa0307540 | 0.818110 | 2.325271e-52 | -8.615850e-47 |
| Msa0233080 | Msa0319170 | 0.809073 | 2.265981e-50 | -8.615850e-47 |
| Msa0233080 | Msa0326520 | 0.801257 | 9.805425e-49 | -8.615850e-47 |
| Msa0233080 | Msa0340450 | 0.811462 | 6.918522e-51 | -8.615850e-47 |
| Msa0233080 | Msa0344690 | -0.815715 | 8.018993e-52 | -8.615850e-47 |
| Msa0233080 | Msa0357340 | 0.800130 | 1.665111e-48 | -8.615850e-47 |
| Msa0233080 | Msa0371730 | 0.806498 | 7.991536e-50 | -8.615850e-47 |
| Msa0233080 | Msa0381610 | -0.816881 | 4.400165e-52 | -8.615850e-47 |
| Msa0233080 | Msa0385840 | 0.804879 | 1.747310e-49 | -8.615850e-47 |
| Msa0233080 | Msa0389270 | 0.800569 | 1.355543e-48 | -8.615850e-47 |
| Msa0233080 | Msa0390400 | -0.800388 | 1.475368e-48 | -8.615850e-47 |
| Msa0233080 | Msa0407750 | 0.805968 | 1.033142e-49 | -8.615850e-47 |
| Msa0233080 | Msa0413410 | 0.802014 | 6.860048e-49 | -8.615850e-47 |
| Msa0233080 | Msa0415980 | 0.801712 | 7.912744e-49 | -8.615850e-47 |
| Msa0233080 | Msa0433410 | -0.800134 | 1.661906e-48 | -8.615850e-47 |
| Msa0233080 | Msa0436800 | 0.815402 | 9.414515e-52 | -8.615850e-47 |
| Msa0233080 | Msa0453580 | 0.806932 | 6.470719e-50 | -8.615850e-47 |
| Msa0233080 | Msa0455760 | 0.804645 | 1.955580e-49 | -8.615850e-47 |
| Msa0233080 | Msa0466120 | 0.808523 | 2.970100e-50 | -8.615850e-47 |
| Msa0233080 | Msa0469940 | -0.813396 | 2.615122e-51 | -8.615850e-47 |
| Msa0233080 | Msa0479340 | 0.822394 | 2.425042e-53 | -8.615850e-47 |
| Msa0233080 | Msa0490140 | 0.860362 | 2.178011e-63 | -8.615850e-47 |
| Msa0233080 | Msa0502340 | 0.804402 | 2.198280e-49 | -8.615850e-47 |
| Msa0233080 | Msa0514320 | 0.885407 | 8.349772e-72 | -8.615850e-47 |
| Msa0233080 | Msa0523940 | 0.819844 | 9.381725e-53 | -8.615850e-47 |
| Msa0233080 | Msa0529040 | 0.805246 | 1.464663e-49 | -8.615850e-47 |
| Msa0233080 | Msa0532350 | 0.820666 | 6.078955e-53 | -8.615850e-47 |
| Msa0233080 | Msa0545700 | 0.831880 | 1.299030e-55 | -8.615850e-47 |
| Msa0233080 | Msa0585230 | 0.800860 | 1.181941e-48 | -8.615850e-47 |
| Msa0233080 | Msa0598780 | 0.802528 | 5.375817e-49 | -8.615850e-47 |
| Msa0233080 | Msa0602980 | 0.838213 | 3.285749e-57 | -8.615850e-47 |
| Msa0233080 | Msa0615010 | 0.826797 | 2.227380e-54 | -8.615850e-47 |
| Msa0233080 | Msa0645300 | 0.894744 | 1.847932e-75 | -8.615850e-47 |
| Msa0233080 | Msa0650630 | 0.833664 | 4.684393e-56 | -8.615850e-47 |
| Msa0233080 | Msa0661650 | 0.803347 | 3.641443e-49 | -8.615850e-47 |
| Msa0233080 | Msa0663240 | 0.815925 | 7.199704e-52 | -8.615850e-47 |
| Msa0233080 | Msa0663380 | 0.822545 | 2.236609e-53 | -8.615850e-47 |
| Msa0233080 | Msa0667740 | 0.802652 | 5.069160e-49 | -8.615850e-47 |
| Msa0233080 | Msa0681250 | 0.804542 | 2.055330e-49 | -8.615850e-47 |
| Msa0233080 | Msa0688480 | 0.822770 | 1.982873e-53 | -8.615850e-47 |
| Msa0233080 | Msa0697060 | 0.802834 | 4.647701e-49 | -8.615850e-47 |
| Msa0233080 | Msa0701010 | 0.815865 | 7.426680e-52 | -8.615850e-47 |
| Msa0233080 | Msa0703120 | 0.807582 | 4.711764e-50 | -8.615850e-47 |
| Msa0233080 | Msa0703780 | 0.816336 | 5.829473e-52 | -8.615850e-47 |
| Msa0233080 | Msa0720390 | 0.808822 | 2.563801e-50 | -8.615850e-47 |
| Msa0233080 | Msa0724210 | 0.805564 | 1.255944e-49 | -8.615850e-47 |
| Msa0233080 | Msa0729800 | 0.805926 | 1.054467e-49 | -8.615850e-47 |
| Msa0233080 | Msa0731940 | 0.828882 | 7.020099e-55 | -8.615850e-47 |
| Msa0233080 | Msa0735170 | 0.808834 | 2.548633e-50 | -8.615850e-47 |
| Msa0233080 | Msa0745260 | -0.806584 | 7.663082e-50 | -8.615850e-47 |
| Msa0233080 | Msa0750240 | 0.803880 | 2.822499e-49 | -8.615850e-47 |
| Msa0233080 | Msa0753720 | 0.820042 | 8.454416e-53 | -8.615850e-47 |
| Msa0233080 | Msa0755180 | 0.810298 | 1.235782e-50 | -8.615850e-47 |
| Msa0233080 | Msa0760130 | 0.832912 | 7.209132e-56 | -8.615850e-47 |
| Msa0233080 | Msa0766630 | 0.879683 | 1.020108e-69 | -8.615850e-47 |
| Msa0233080 | Msa0767170 | 0.802536 | 5.355032e-49 | -8.615850e-47 |
| Msa0233080 | Msa0767760 | 0.814754 | 1.311523e-51 | -8.615850e-47 |
| Msa0233080 | Msa0768290 | 0.806782 | 6.958726e-50 | -8.615850e-47 |
| Msa0233080 | Msa0768310 | 0.800606 | 1.331804e-48 | -8.615850e-47 |
| Msa0233080 | Msa0768370 | 0.819539 | 1.101568e-52 | -8.615850e-47 |
| Msa0233080 | Msa0773180 | 0.811514 | 6.738723e-51 | -8.615850e-47 |
| Msa0233080 | Msa0810220 | 0.825813 | 3.820559e-54 | -8.615850e-47 |
| Msa0233080 | Msa0811080 | 0.812757 | 3.610012e-51 | -8.615850e-47 |
| Msa0233080 | Msa0817460 | 0.808957 | 2.398893e-50 | -8.615850e-47 |
| Msa0233080 | Msa0820850 | 0.841640 | 4.203683e-58 | -8.615850e-47 |
| Msa0233080 | Msa0830510 | 0.805747 | 1.149906e-49 | -8.615850e-47 |
| Msa0233080 | Msa0831850 | 0.819642 | 1.043094e-52 | -8.615850e-47 |
| Msa0233080 | Msa0832340 | 0.820656 | 6.113558e-53 | -8.615850e-47 |
| Msa0233080 | Msa0842650 | 0.803862 | 2.847183e-49 | -8.615850e-47 |
| Msa0233080 | Msa0844490 | 0.819856 | 9.322117e-53 | -8.615850e-47 |
| Msa0233080 | Msa0849030 | 0.802915 | 4.472955e-49 | -8.615850e-47 |
| Msa0233080 | Msa0857640 | 0.814503 | 1.490167e-51 | -8.615850e-47 |
| Msa0233080 | Msa0861130 | 0.841297 | 5.175406e-58 | -8.615850e-47 |
| Msa0233080 | Msa0864070 | 0.802249 | 6.137189e-49 | -8.615850e-47 |
| Msa0233080 | Msa0877250 | 0.829796 | 4.212151e-55 | -8.615850e-47 |
| Msa0233080 | Msa0885290 | 0.803434 | 3.492228e-49 | -8.615850e-47 |
| Msa0233080 | Msa0897330 | 0.846924 | 1.600013e-59 | -8.615850e-47 |
| Msa0233080 | Msa0897880 | 0.825832 | 3.779635e-54 | -8.615850e-47 |
| Msa0233080 | Msa0899430 | 0.852666 | 3.974412e-61 | -8.615850e-47 |
| Msa0233080 | Msa0899450 | 0.856262 | 3.623227e-62 | -8.615850e-47 |
| Msa0233080 | Msa0907070 | 0.807369 | 5.227913e-50 | -8.615850e-47 |
| Msa0233080 | Msa0907260 | 0.813350 | 2.675915e-51 | -8.615850e-47 |
| Msa0233080 | Msa0914270 | 0.825217 | 5.288278e-54 | -8.615850e-47 |
| Msa0233080 | Msa0924310 | 0.800265 | 1.562859e-48 | -8.615850e-47 |
| Msa0233080 | Msa0925250 | 0.808579 | 2.889430e-50 | -8.615850e-47 |
| Msa0233080 | Msa0925290 | 0.824909 | 6.251339e-54 | -8.615850e-47 |
| Msa0233080 | Msa0927290 | 0.811523 | 6.709914e-51 | -8.615850e-47 |
| Msa0233080 | Msa0927380 | 0.865560 | 5.406891e-65 | -8.615850e-47 |
| Msa0233080 | Msa0933100 | 0.812740 | 3.642237e-51 | -8.615850e-47 |
| Msa0233080 | Msa0935910 | 0.830072 | 3.607505e-55 | -8.615850e-47 |
| Msa0233080 | Msa0948320 | 0.857669 | 1.394739e-62 | -8.615850e-47 |
| Msa0233080 | Msa0954910 | 0.812977 | 3.230392e-51 | -8.615850e-47 |
| Msa0233080 | Msa0956270 | 0.805667 | 1.194985e-49 | -8.615850e-47 |
| Msa0233080 | Msa0958550 | 0.847365 | 1.210940e-59 | -8.615850e-47 |
| Msa0233080 | Msa0964900 | 0.851214 | 1.027022e-60 | -8.615850e-47 |
| Msa0233080 | Msa0967280 | 0.801355 | 9.363974e-49 | -8.615850e-47 |
| Msa0233080 | Msa0967580 | 0.801126 | 1.043027e-48 | -8.615850e-47 |
| Msa0233080 | Msa0969450 | 0.800885 | 1.168265e-48 | -8.615850e-47 |
| Msa0233080 | Msa0969520 | 0.828486 | 8.754796e-55 | -8.615850e-47 |
| Msa0233080 | Msa0973100 | 0.804410 | 2.189735e-49 | -8.615850e-47 |
| Msa0233080 | Msa0974070 | 0.819566 | 1.085619e-52 | -8.615850e-47 |
| Msa0233080 | Msa0974080 | 0.843018 | 1.813464e-58 | -8.615850e-47 |
| Msa0233080 | Msa0976670 | 0.832913 | 7.204040e-56 | -8.615850e-47 |
| Msa0233080 | Msa0983090 | 0.812486 | 4.138525e-51 | -8.615850e-47 |
| Msa0233080 | Msa0997370 | 0.808726 | 2.687874e-50 | -8.615850e-47 |
| Msa0233080 | Msa0999220 | 0.800621 | 1.322297e-48 | -8.615850e-47 |
| Msa0233080 | Msa1000880 | 0.814290 | 1.661149e-51 | -8.615850e-47 |
| Msa0233080 | Msa1000890 | 0.826304 | 2.920318e-54 | -8.615850e-47 |
| Msa0233080 | Msa1000900 | 0.825869 | 3.704745e-54 | -8.615850e-47 |
| Msa0233080 | Msa1002850 | 0.801536 | 8.597432e-49 | -8.615850e-47 |
| Msa0233080 | Msa1014540 | 0.824203 | 9.164173e-54 | -8.615850e-47 |
| Msa0233080 | Msa1015490 | 0.803515 | 3.359658e-49 | -8.615850e-47 |
| Msa0233080 | Msa1023950 | 0.810932 | 9.012270e-51 | -8.615850e-47 |
| Msa0233080 | Msa1050680 | 0.807068 | 6.053500e-50 | -8.615850e-47 |
| Msa0233080 | Msa1052330 | 0.811392 | 7.164104e-51 | -8.615850e-47 |
| Msa0233080 | Msa1060840 | 0.801451 | 8.947406e-49 | -8.615850e-47 |
| Msa0233080 | Msa1065570 | 0.821076 | 4.893656e-53 | -8.615850e-47 |
| Msa0233080 | Msa1075220 | -0.820749 | 5.820281e-53 | -8.615850e-47 |
| Msa0233080 | Msa1075540 | 0.805078 | 1.587961e-49 | -8.615850e-47 |
| Msa0233080 | Msa1075650 | 0.826091 | 3.280957e-54 | -8.615850e-47 |
| Msa0233080 | Msa1082500 | 0.813092 | 3.049611e-51 | -8.615850e-47 |
| Msa0233080 | Msa1103980 | 0.805657 | 1.200907e-49 | -8.615850e-47 |
| Msa0233080 | Msa1104090 | 0.805688 | 1.182952e-49 | -8.615850e-47 |
| Msa0233080 | Msa1113170 | 0.827633 | 1.404598e-54 | -8.615850e-47 |
| Msa0233080 | Msa1114030 | 0.807163 | 5.779765e-50 | -8.615850e-47 |
| Msa0233080 | Msa1116260 | 0.801172 | 1.020454e-48 | -8.615850e-47 |
| Msa0233080 | Msa1117150 | 0.815092 | 1.103812e-51 | -8.615850e-47 |
| Msa0233080 | Msa1121480 | 0.831796 | 1.362621e-55 | -8.615850e-47 |
| Msa0233080 | Msa1121490 | 0.843382 | 1.449834e-58 | -8.615850e-47 |
| Msa0233080 | Msa1137570 | 0.823533 | 1.316216e-53 | -8.615850e-47 |
| Msa0233080 | Msa1139000 | -0.812669 | 3.773589e-51 | -8.615850e-47 |
| Msa0233080 | Msa1144720 | -0.807911 | 4.010938e-50 | -8.615850e-47 |
| Msa0233080 | Msa1156020 | 0.808337 | 3.254699e-50 | -8.615850e-47 |
| Msa0233080 | Msa1162550 | -0.824655 | 7.175948e-54 | -8.615850e-47 |
| Msa0233080 | Msa1174040 | 0.805735 | 1.156624e-49 | -8.615850e-47 |
| Msa0233080 | Msa1177560 | 0.803374 | 3.594901e-49 | -8.615850e-47 |
| Msa0233080 | Msa1179770 | 0.801736 | 7.820386e-49 | -8.615850e-47 |
| Msa0233080 | Msa1185110 | 0.813533 | 2.439432e-51 | -8.615850e-47 |
| Msa0233080 | Msa1195190 | 0.809793 | 1.587351e-50 | -8.615850e-47 |
| Msa0233080 | Msa1246510 | 0.802229 | 6.193386e-49 | -8.615850e-47 |
| Msa0233080 | Msa1248370 | 0.801854 | 7.397867e-49 | -8.615850e-47 |
| Msa0233080 | Msa1249490 | 0.812203 | 4.770600e-51 | -8.615850e-47 |
| Msa0233080 | Msa1253000 | 0.823137 | 1.628835e-53 | -8.615850e-47 |
| Msa0233080 | Msa1268880 | 0.820586 | 6.344308e-53 | -8.615850e-47 |
| Msa0233080 | Msa1277660 | 0.803159 | 3.982655e-49 | -8.615850e-47 |
| Msa0233080 | Msa1284680 | 0.855651 | 5.467216e-62 | -8.615850e-47 |
| Msa0233080 | Msa1286760 | 0.806541 | 7.825057e-50 | -8.615850e-47 |
| Msa0233080 | Msa1286800 | 0.814973 | 1.172993e-51 | -8.615850e-47 |
| Msa0233080 | Msa1353470 | 0.825621 | 4.242604e-54 | -8.615850e-47 |
| Msa0233080 | Msa1366810 | 0.826586 | 2.501393e-54 | -8.615850e-47 |
| Msa0233080 | Msa1373030 | 0.829390 | 5.286949e-55 | -8.615850e-47 |
| Msa0233080 | Msa1378940 | 0.815915 | 7.239594e-52 | -8.615850e-47 |
| Msa0233080 | Msa1384280 | 0.825566 | 4.371674e-54 | -8.615850e-47 |
| Msa0233080 | Msa1394310 | 0.817146 | 3.836063e-52 | -8.615850e-47 |
| Msa0233080 | Msa1403480 | 0.824063 | 9.889571e-54 | -8.615850e-47 |
| Msa0233080 | Msa1410680 | 0.810269 | 1.253611e-50 | -8.615850e-47 |
| Msa0233080 | Msa1411020 | 0.813292 | 2.755770e-51 | -8.615850e-47 |
| Msa0233080 | Msa1419960 | 0.801361 | 9.336473e-49 | -8.615850e-47 |
| Msa0233080 | Msa1420490 | 0.805221 | 1.482208e-49 | -8.615850e-47 |
| Msa0233080 | Msa1420820 | 0.812515 | 4.077461e-51 | -8.615850e-47 |
| Msa0233080 | Msa1423390 | 0.805884 | 1.076116e-49 | -8.615850e-47 |
| Msa0233080 | Msa1424290 | 0.804006 | 2.657361e-49 | -8.615850e-47 |
| Msa0233080 | Msa1427230 | 0.802384 | 5.755124e-49 | -8.615850e-47 |
| Msa0233080 | Msa1434350 | 0.803948 | 2.732164e-49 | -8.615850e-47 |
| Msa0233080 | Msa1439320 | 0.807052 | 6.102001e-50 | -8.615850e-47 |
| Msa0233080 | Msa1440370 | 0.807909 | 4.013651e-50 | -8.615850e-47 |
| Msa0233080 | Msa1440810 | 0.809368 | 1.959083e-50 | -8.615850e-47 |
| Msa0233080 | Msa1443060 | 0.815280 | 1.002138e-51 | -8.615850e-47 |
| Msa0233080 | Msa1444440 | 0.811229 | 7.770786e-51 | -8.615850e-47 |
| Msa0233080 | Msa1451620 | -0.820173 | 7.889880e-53 | -8.615850e-47 |
| Msa0233080 | Msa1466540 | 0.805911 | 1.061923e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233080 | MtrunA17_Chr2g0285481 | 55.777 | 251 | 90 | 6 | 2 | 233 | 1 | 249 | 1.12e-85 | 257 |
| Msa0233080 | MtrunA17_Chr1g0172741 | 54.980 | 251 | 92 | 6 | 2 | 233 | 1 | 249 | 2.86e-84 | 254 |
| Msa0233080 | MtrunA17_Chr8g0334551 | 49.412 | 255 | 107 | 4 | 1 | 233 | 1 | 255 | 5.49e-72 | 223 |
| Msa0233080 | MtrunA17_Chr2g0321391 | 58.480 | 171 | 53 | 4 | 79 | 233 | 3 | 171 | 1.07e-58 | 186 |
| Msa0233080 | MtrunA17_Chr5g0422701 | 54.615 | 130 | 46 | 4 | 115 | 233 | 12 | 139 | 5.54e-36 | 127 |
| Msa0233080 | MtrunA17_Chr5g0422691 | 56.190 | 105 | 43 | 2 | 2 | 103 | 1 | 105 | 6.81e-35 | 120 |
| Msa0233080 | MtrunA17_Chr2g0295611 | 52.083 | 96 | 34 | 2 | 100 | 183 | 1 | 96 | 4.63e-23 | 89.7 |
| Msa0233080 | MtrunA17_Chr3g0113081 | 34.868 | 152 | 79 | 4 | 22 | 162 | 185 | 327 | 1.19e-19 | 87.4 |
| Msa0233080 | MtrunA17_Chr3g0113081 | 34.078 | 179 | 97 | 4 | 12 | 171 | 373 | 549 | 7.67e-19 | 85.1 |
| Msa0233080 | MtrunA17_Chr3g0113081 | 33.088 | 136 | 73 | 4 | 9 | 133 | 1 | 129 | 3.50e-14 | 71.6 |
| Msa0233080 | MtrunA17_Chr8g0362511 | 32.544 | 169 | 98 | 4 | 21 | 176 | 67 | 232 | 9.03e-19 | 84.0 |
| Msa0233080 | MtrunA17_Chr5g0402821 | 32.759 | 174 | 98 | 5 | 22 | 180 | 16 | 185 | 2.00e-17 | 79.7 |
| Msa0233080 | MtrunA17_Chr5g0405761 | 32.143 | 140 | 83 | 2 | 19 | 147 | 47 | 185 | 1.45e-16 | 77.4 |
| Msa0233080 | MtrunA17_Chr1g0176881 | 32.456 | 114 | 74 | 2 | 4 | 117 | 177 | 287 | 1.10e-13 | 70.1 |
| Msa0233080 | MtrunA17_Chr1g0176881 | 27.206 | 136 | 87 | 2 | 21 | 145 | 21 | 155 | 5.48e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233080 | AT5G05800.1 | 35.052 | 97 | 62 | 1 | 20 | 116 | 2 | 97 | 1.80e-14 | 72.4 |
| Msa0233080 | AT5G05800.1 | 29.412 | 153 | 91 | 3 | 6 | 147 | 156 | 302 | 2.08e-13 | 69.3 |
| Msa0233080 | AT5G05800.5 | 35.052 | 97 | 62 | 1 | 20 | 116 | 2 | 97 | 1.80e-14 | 72.4 |
| Msa0233080 | AT5G05800.5 | 29.412 | 153 | 91 | 3 | 6 | 147 | 156 | 302 | 2.08e-13 | 69.3 |
| Msa0233080 | AT5G05800.3 | 35.052 | 97 | 62 | 1 | 20 | 116 | 2 | 97 | 1.80e-14 | 72.4 |
| Msa0233080 | AT5G05800.3 | 29.412 | 153 | 91 | 3 | 6 | 147 | 156 | 302 | 2.08e-13 | 69.3 |
| Msa0233080 | AT5G05800.2 | 35.052 | 97 | 62 | 1 | 20 | 116 | 2 | 97 | 1.80e-14 | 72.4 |
| Msa0233080 | AT5G05800.2 | 29.412 | 153 | 91 | 3 | 6 | 147 | 156 | 302 | 2.08e-13 | 69.3 |
| Msa0233080 | AT5G05800.4 | 35.052 | 97 | 62 | 1 | 20 | 116 | 2 | 97 | 1.80e-14 | 72.4 |
| Msa0233080 | AT5G05800.4 | 29.412 | 153 | 91 | 3 | 6 | 147 | 156 | 302 | 2.08e-13 | 69.3 |
| Msa0233080 | AT2G24960.2 | 26.277 | 137 | 89 | 2 | 8 | 133 | 155 | 290 | 2.36e-11 | 63.5 |
| Msa0233080 | AT2G24960.1 | 26.667 | 135 | 87 | 2 | 10 | 133 | 157 | 290 | 2.92e-11 | 63.5 |
Find 55 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCATTGTATAACTTATT+TGG | 0.134716 | 2_2:+5422515 | Msa0233080:CDS |
| ACAACTGAATTTGGAAATAT+TGG | 0.148866 | 2_2:+5422918 | Msa0233080:CDS |
| GTTGGATCAACAACTGAATT+TGG | 0.160832 | 2_2:+5422909 | Msa0233080:CDS |
| GGCAGAAAACAAAAGCTAAT+TGG | 0.275009 | 2_2:+5422306 | Msa0233080:CDS |
| AACTTATTTGGGAGAGAAAC+TGG | 0.287945 | 2_2:+5422527 | Msa0233080:CDS |
| TTGGGAGAGAAACTGGATTA+GGG | 0.298488 | 2_2:+5422534 | Msa0233080:CDS |
| TTTGGGAGAGAAACTGGATT+AGG | 0.315464 | 2_2:+5422533 | Msa0233080:CDS |
| AAACTTTGTGAAAGCATGTT+TGG | 0.334075 | 2_2:+5422346 | Msa0233080:CDS |
| GAGCATTGTATAACTTATTT+GGG | 0.334140 | 2_2:+5422516 | Msa0233080:CDS |
| CAACTGAATTTGGAAATATT+GGG | 0.344270 | 2_2:+5422919 | Msa0233080:CDS |
| GTCCGGTTAAATTATGAAAT+CGG | 0.352053 | 2_2:-5422436 | None:intergenic |
| TGTATTACATACCAGTTGTT+TGG | 0.352266 | 2_2:-5422606 | None:intergenic |
| ATCATCAAAGATAGCTGAAT+TGG | 0.366457 | 2_2:+5423037 | Msa0233080:CDS |
| TTCAAGGATGTAGTGGCTAA+TGG | 0.366838 | 2_2:+5422768 | Msa0233080:CDS |
| GTCCGATTTCATAATTTAAC+CGG | 0.374307 | 2_2:+5422434 | Msa0233080:CDS |
| TTGGTCTCCCACCACTCATC+AGG | 0.410369 | 2_2:-5422587 | None:intergenic |
| GCAGAAAACAAAAGCTAATT+GGG | 0.414370 | 2_2:+5422307 | Msa0233080:CDS |
| GTTCCTCCTCACCTAGTGAT+GGG | 0.415978 | 2_2:+5422282 | Msa0233080:CDS |
| GAAAAGTGTGGTTAACTCAT+TGG | 0.420206 | 2_2:-5422748 | None:intergenic |
| AAAAGGGTGGACAAATATTA+GGG | 0.422862 | 2_2:+5422412 | Msa0233080:CDS |
| GGTTCCTCCTCACCTAGTGA+TGG | 0.438340 | 2_2:+5422281 | Msa0233080:CDS |
| TTCCTCCTCACCTAGTGATG+GGG | 0.476214 | 2_2:+5422283 | Msa0233080:CDS |
| AGAAGGCTCAACTAAAGAAT+AGG | 0.479515 | 2_2:+5422468 | Msa0233080:CDS |
| TCCTCCTCACCTAGTGATGG+GGG | 0.484199 | 2_2:+5422284 | Msa0233080:CDS |
| GATGAGGCAGTGGCTGTAGA+AGG | 0.502147 | 2_2:+5422861 | Msa0233080:CDS |
| AGCCTTCTCATACTTCAGTC+CGG | 0.504703 | 2_2:-5422453 | None:intergenic |
| CGTACCAACACGTTCTCCCT+TGG | 0.505137 | 2_2:-5422378 | None:intergenic |
| TGGCTAATGGAGAGTACACT+TGG | 0.522261 | 2_2:+5422781 | Msa0233080:CDS |
| GCAGTGGCTGTAGAAGGATC+TGG | 0.527670 | 2_2:+5422867 | Msa0233080:CDS |
| ATGACAGTCTGAGAAAGGAT+TGG | 0.531322 | 2_2:+5422492 | Msa0233080:CDS |
| GTGGTGGGAGACCAAACAAC+TGG | 0.536532 | 2_2:+5422595 | Msa0233080:CDS |
| TAGGTATGACAGTCTGAGAA+AGG | 0.543958 | 2_2:+5422487 | Msa0233080:CDS |
| AATTCTTCACAGAAAACTGA+TGG | 0.549095 | 2_2:+5422945 | Msa0233080:CDS |
| GGAGAGAAACTGGATTAGGG+TGG | 0.557144 | 2_2:+5422537 | Msa0233080:CDS |
| GTCAAAAGAGTGGTGAGAAG+AGG | 0.562252 | 2_2:+5422967 | Msa0233080:CDS |
| ATGTTTGGAGCAAGTCTCCA+AGG | 0.570714 | 2_2:+5422361 | Msa0233080:CDS |
| TACACTTGGGCACCATCATG+TGG | 0.573130 | 2_2:+5422795 | Msa0233080:CDS |
| GATAACGAGGATGCAAGTGT+TGG | 0.597690 | 2_2:+5422891 | Msa0233080:CDS |
| GATGGCAATACCCCACATGA+TGG | 0.601622 | 2_2:-5422807 | None:intergenic |
| CCTCCTCACCTAGTGATGGG+GGG | 0.608278 | 2_2:+5422285 | Msa0233080:CDS |
| GCTACAACAGTGTTGTTCAC+AGG | 0.614063 | 2_2:-5422563 | None:intergenic |
| GTGGTTAACTCATTGGCGAA+TGG | 0.617203 | 2_2:-5422741 | None:intergenic |
| AACCGGACTGAAGTATGAGA+AGG | 0.626830 | 2_2:+5422451 | Msa0233080:CDS |
| ACACTTGGGCACCATCATGT+GGG | 0.626839 | 2_2:+5422796 | Msa0233080:CDS |
| CACTACATCCTTGAAAAGTG+TGG | 0.627204 | 2_2:-5422760 | None:intergenic |
| AGAAGGATCTGGCGATAACG+AGG | 0.629455 | 2_2:+5422878 | Msa0233080:CDS |
| TTGTAGCACCTGATGAGTGG+TGG | 0.632872 | 2_2:+5422579 | Msa0233080:CDS |
| GAGAGAAACTGGATTAGGGT+GGG | 0.643865 | 2_2:+5422538 | Msa0233080:CDS |
| GTCTCCAAGGGAGAACGTGT+TGG | 0.644338 | 2_2:+5422374 | Msa0233080:CDS |
| CACTTGGGCACCATCATGTG+GGG | 0.646121 | 2_2:+5422797 | Msa0233080:CDS |
| TGTTTGGAGCAAGTCTCCAA+GGG | 0.647436 | 2_2:+5422362 | Msa0233080:CDS |
| AAAACTGATGGTCAAAAGAG+TGG | 0.650196 | 2_2:+5422957 | Msa0233080:CDS |
| TGTAGCACCTGATGAGTGGT+GGG | 0.651018 | 2_2:+5422580 | Msa0233080:CDS |
| GGCTAATGGAGAGTACACTT+GGG | 0.684848 | 2_2:+5422782 | Msa0233080:CDS |
| CTGTTGTAGCACCTGATGAG+TGG | 0.705267 | 2_2:+5422576 | Msa0233080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTAAATTTTTCATAAAGA+GGG | - | chr2_2:5422710-5422729 | None:intergenic | 15.0% |
| !!! | TTTCTAAATTTTTCATAAAG+AGG | - | chr2_2:5422711-5422730 | None:intergenic | 15.0% |
| !! | TTATGAAAAATTTAGAAACA+AGG | + | chr2_2:5422713-5422732 | Msa0233080:intron | 15.0% |
| !! | TATGAAAAATTTAGAAACAA+GGG | + | chr2_2:5422714-5422733 | Msa0233080:intron | 15.0% |
| !!! | TTCTAAATTTTTCATAAAGA+GGG | - | chr2_2:5422710-5422729 | None:intergenic | 15.0% |
| !!! | TTTCTAAATTTTTCATAAAG+AGG | - | chr2_2:5422711-5422730 | None:intergenic | 15.0% |
| !! | TTATGAAAAATTTAGAAACA+AGG | + | chr2_2:5422713-5422732 | Msa0233080:intron | 15.0% |
| !! | TATGAAAAATTTAGAAACAA+GGG | + | chr2_2:5422714-5422733 | Msa0233080:intron | 15.0% |
| !! | ATGAAAAATTTAGAAACAAG+GGG | + | chr2_2:5422715-5422734 | Msa0233080:intron | 20.0% |
| !! | ATGAAAAATTTAGAAACAAG+GGG | + | chr2_2:5422715-5422734 | Msa0233080:intron | 20.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | + | chr2_2:5422260-5422279 | Msa0233080:CDS | 25.0% |
| !!! | AGAGCATTGTATAACTTATT+TGG | + | chr2_2:5422515-5422534 | Msa0233080:CDS | 25.0% |
| !! | GAGCATTGTATAACTTATTT+GGG | + | chr2_2:5422516-5422535 | Msa0233080:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | + | chr2_2:5422918-5422937 | Msa0233080:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | + | chr2_2:5422919-5422938 | Msa0233080:CDS | 25.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | + | chr2_2:5422260-5422279 | Msa0233080:CDS | 25.0% |
| !!! | AGAGCATTGTATAACTTATT+TGG | + | chr2_2:5422515-5422534 | Msa0233080:CDS | 25.0% |
| !! | GAGCATTGTATAACTTATTT+GGG | + | chr2_2:5422516-5422535 | Msa0233080:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | + | chr2_2:5422918-5422937 | Msa0233080:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | + | chr2_2:5422919-5422938 | Msa0233080:CDS | 25.0% |
| GAATACCAAGAAAAATGTTG+TGG | + | chr2_2:5422259-5422278 | Msa0233080:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | + | chr2_2:5422307-5422326 | Msa0233080:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | + | chr2_2:5422346-5422365 | Msa0233080:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | + | chr2_2:5422396-5422415 | Msa0233080:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | + | chr2_2:5422411-5422430 | Msa0233080:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | + | chr2_2:5422412-5422431 | Msa0233080:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | + | chr2_2:5422434-5422453 | Msa0233080:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | - | chr2_2:5422439-5422458 | None:intergenic | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | - | chr2_2:5422609-5422628 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | - | chr2_2:5422652-5422671 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | - | chr2_2:5422828-5422847 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | + | chr2_2:5422845-5422864 | Msa0233080:CDS | 30.0% |
| AATTCTTCACAGAAAACTGA+TGG | + | chr2_2:5422945-5422964 | Msa0233080:CDS | 30.0% | |
| ATCATCAAAGATAGCTGAAT+TGG | + | chr2_2:5423037-5423056 | Msa0233080:CDS | 30.0% | |
| GAATACCAAGAAAAATGTTG+TGG | + | chr2_2:5422259-5422278 | Msa0233080:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | + | chr2_2:5422307-5422326 | Msa0233080:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | + | chr2_2:5422346-5422365 | Msa0233080:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | + | chr2_2:5422396-5422415 | Msa0233080:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | + | chr2_2:5422411-5422430 | Msa0233080:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | + | chr2_2:5422412-5422431 | Msa0233080:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | + | chr2_2:5422434-5422453 | Msa0233080:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | - | chr2_2:5422439-5422458 | None:intergenic | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | - | chr2_2:5422609-5422628 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | - | chr2_2:5422652-5422671 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | - | chr2_2:5422828-5422847 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | + | chr2_2:5422845-5422864 | Msa0233080:CDS | 30.0% |
| AATTCTTCACAGAAAACTGA+TGG | + | chr2_2:5422945-5422964 | Msa0233080:CDS | 30.0% | |
| ATCATCAAAGATAGCTGAAT+TGG | + | chr2_2:5423037-5423056 | Msa0233080:CDS | 30.0% | |
| GGCAGAAAACAAAAGCTAAT+TGG | + | chr2_2:5422306-5422325 | Msa0233080:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | + | chr2_2:5422395-5422414 | Msa0233080:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | + | chr2_2:5422468-5422487 | Msa0233080:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | + | chr2_2:5422527-5422546 | Msa0233080:CDS | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | - | chr2_2:5422751-5422770 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | + | chr2_2:5422752-5422771 | Msa0233080:CDS | 35.0% |
| GTTGGATCAACAACTGAATT+TGG | + | chr2_2:5422909-5422928 | Msa0233080:CDS | 35.0% | |
| AAAACTGATGGTCAAAAGAG+TGG | + | chr2_2:5422957-5422976 | Msa0233080:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | - | chr2_2:5423017-5423036 | None:intergenic | 35.0% |
| GGCAGAAAACAAAAGCTAAT+TGG | + | chr2_2:5422306-5422325 | Msa0233080:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | + | chr2_2:5422395-5422414 | Msa0233080:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | + | chr2_2:5422468-5422487 | Msa0233080:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | + | chr2_2:5422527-5422546 | Msa0233080:CDS | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | - | chr2_2:5422751-5422770 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | + | chr2_2:5422752-5422771 | Msa0233080:CDS | 35.0% |
| GTTGGATCAACAACTGAATT+TGG | + | chr2_2:5422909-5422928 | Msa0233080:CDS | 35.0% | |
| AAAACTGATGGTCAAAAGAG+TGG | + | chr2_2:5422957-5422976 | Msa0233080:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | - | chr2_2:5423017-5423036 | None:intergenic | 35.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | - | chr2_2:5422267-5422286 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | + | chr2_2:5422399-5422418 | Msa0233080:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | + | chr2_2:5422487-5422506 | Msa0233080:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | + | chr2_2:5422492-5422511 | Msa0233080:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | + | chr2_2:5422533-5422552 | Msa0233080:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | + | chr2_2:5422534-5422553 | Msa0233080:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | - | chr2_2:5422763-5422782 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | + | chr2_2:5422761-5422780 | Msa0233080:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | + | chr2_2:5422768-5422787 | Msa0233080:CDS | 40.0% | |
| ! | GGAACCCACAACATTTTTCT+TGG | - | chr2_2:5422267-5422286 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | + | chr2_2:5422399-5422418 | Msa0233080:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | + | chr2_2:5422487-5422506 | Msa0233080:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | + | chr2_2:5422492-5422511 | Msa0233080:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | + | chr2_2:5422533-5422552 | Msa0233080:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | + | chr2_2:5422534-5422553 | Msa0233080:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | - | chr2_2:5422763-5422782 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | + | chr2_2:5422761-5422780 | Msa0233080:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | + | chr2_2:5422768-5422787 | Msa0233080:CDS | 40.0% | |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | + | chr2_2:5422361-5422380 | Msa0233080:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | + | chr2_2:5422362-5422381 | Msa0233080:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | + | chr2_2:5422451-5422470 | Msa0233080:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | - | chr2_2:5422456-5422475 | None:intergenic | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | + | chr2_2:5422538-5422557 | Msa0233080:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | - | chr2_2:5422566-5422585 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | - | chr2_2:5422744-5422763 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | + | chr2_2:5422781-5422800 | Msa0233080:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | + | chr2_2:5422782-5422801 | Msa0233080:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | + | chr2_2:5422851-5422870 | Msa0233080:CDS | 45.0% |
| GATAACGAGGATGCAAGTGT+TGG | + | chr2_2:5422891-5422910 | Msa0233080:CDS | 45.0% | |
| GTCAAAAGAGTGGTGAGAAG+AGG | + | chr2_2:5422967-5422986 | Msa0233080:CDS | 45.0% | |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | + | chr2_2:5422361-5422380 | Msa0233080:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | + | chr2_2:5422362-5422381 | Msa0233080:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | + | chr2_2:5422451-5422470 | Msa0233080:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | - | chr2_2:5422456-5422475 | None:intergenic | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | + | chr2_2:5422538-5422557 | Msa0233080:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | - | chr2_2:5422566-5422585 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | - | chr2_2:5422744-5422763 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | + | chr2_2:5422781-5422800 | Msa0233080:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | + | chr2_2:5422782-5422801 | Msa0233080:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | + | chr2_2:5422851-5422870 | Msa0233080:CDS | 45.0% |
| GATAACGAGGATGCAAGTGT+TGG | + | chr2_2:5422891-5422910 | Msa0233080:CDS | 45.0% | |
| GTCAAAAGAGTGGTGAGAAG+AGG | + | chr2_2:5422967-5422986 | Msa0233080:CDS | 45.0% | |
| GTTCCTCCTCACCTAGTGAT+GGG | + | chr2_2:5422282-5422301 | Msa0233080:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | + | chr2_2:5422283-5422302 | Msa0233080:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | + | chr2_2:5422537-5422556 | Msa0233080:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | + | chr2_2:5422576-5422595 | Msa0233080:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | + | chr2_2:5422579-5422598 | Msa0233080:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | + | chr2_2:5422580-5422599 | Msa0233080:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | + | chr2_2:5422795-5422814 | Msa0233080:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | + | chr2_2:5422796-5422815 | Msa0233080:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | - | chr2_2:5422810-5422829 | None:intergenic | 50.0% | |
| AGAAGGATCTGGCGATAACG+AGG | + | chr2_2:5422878-5422897 | Msa0233080:CDS | 50.0% | |
| GTTCCTCCTCACCTAGTGAT+GGG | + | chr2_2:5422282-5422301 | Msa0233080:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | + | chr2_2:5422283-5422302 | Msa0233080:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | + | chr2_2:5422537-5422556 | Msa0233080:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | + | chr2_2:5422576-5422595 | Msa0233080:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | + | chr2_2:5422579-5422598 | Msa0233080:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | + | chr2_2:5422580-5422599 | Msa0233080:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | + | chr2_2:5422795-5422814 | Msa0233080:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | + | chr2_2:5422796-5422815 | Msa0233080:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | - | chr2_2:5422810-5422829 | None:intergenic | 50.0% | |
| AGAAGGATCTGGCGATAACG+AGG | + | chr2_2:5422878-5422897 | Msa0233080:CDS | 50.0% | |
| GGTTCCTCCTCACCTAGTGA+TGG | + | chr2_2:5422281-5422300 | Msa0233080:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | + | chr2_2:5422284-5422303 | Msa0233080:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | - | chr2_2:5422296-5422315 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | + | chr2_2:5422374-5422393 | Msa0233080:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | - | chr2_2:5422381-5422400 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | - | chr2_2:5422590-5422609 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | + | chr2_2:5422595-5422614 | Msa0233080:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | + | chr2_2:5422797-5422816 | Msa0233080:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | + | chr2_2:5422861-5422880 | Msa0233080:CDS | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | + | chr2_2:5422867-5422886 | Msa0233080:CDS | 55.0% | |
| GGTTCCTCCTCACCTAGTGA+TGG | + | chr2_2:5422281-5422300 | Msa0233080:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | + | chr2_2:5422284-5422303 | Msa0233080:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | - | chr2_2:5422296-5422315 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | + | chr2_2:5422374-5422393 | Msa0233080:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | - | chr2_2:5422381-5422400 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | - | chr2_2:5422590-5422609 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | + | chr2_2:5422595-5422614 | Msa0233080:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | + | chr2_2:5422797-5422816 | Msa0233080:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | + | chr2_2:5422861-5422880 | Msa0233080:CDS | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | + | chr2_2:5422867-5422886 | Msa0233080:CDS | 55.0% | |
| ! | CCTCCTCACCTAGTGATGGG+GGG | + | chr2_2:5422285-5422304 | Msa0233080:CDS | 60.0% |
| ! | CCTCCTCACCTAGTGATGGG+GGG | + | chr2_2:5422285-5422304 | Msa0233080:CDS | 60.0% |
| CCCCCCATCACTAGGTGAGG+AGG | - | chr2_2:5422288-5422307 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | - | chr2_2:5422291-5422310 | None:intergenic | 65.0% | |
| CCCCCCATCACTAGGTGAGG+AGG | - | chr2_2:5422288-5422307 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | - | chr2_2:5422291-5422310 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5422254 | 5423097 | 5422254 | ID=Msa0233080;Name=Msa0233080 |
| chr2_2 | mRNA | 5422254 | 5423097 | 5422254 | ID=Msa0233080-mRNA-1;Parent=Msa0233080;Name=Msa0233080-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|241 |
| chr2_2 | exon | 5422254 | 5422616 | 5422254 | ID=Msa0233080-mRNA-1:exon:2347;Parent=Msa0233080-mRNA-1 |
| chr2_2 | exon | 5422735 | 5423097 | 5422735 | ID=Msa0233080-mRNA-1:exon:2348;Parent=Msa0233080-mRNA-1 |
| chr2_2 | CDS | 5422254 | 5422616 | 5422254 | ID=Msa0233080-mRNA-1:cds;Parent=Msa0233080-mRNA-1 |
| chr2_2 | CDS | 5422735 | 5423097 | 5422735 | ID=Msa0233080-mRNA-1:cds;Parent=Msa0233080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
