Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393750 | XP_003598212.1 | 96.907 | 388 | 12 | 0 | 1 | 388 | 1 | 388 | 0.0 | 773 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393750 | sp|Q9SUW0|TPPG_ARATH | 62.304 | 382 | 129 | 2 | 1 | 382 | 1 | 367 | 1.81e-165 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393750 | G7IYG6 | 96.907 | 388 | 12 | 0 | 1 | 388 | 1 | 388 | 0.0 | 773 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0393750 | Msa0441600 | 0.867909 | 9.662752e-66 | -8.615850e-47 |
| Msa0393750 | Msa0489120 | 0.872663 | 2.676005e-67 | -8.615850e-47 |
| Msa0393750 | Msa0875340 | 0.806792 | 6.926188e-50 | -8.615850e-47 |
| Msa0393750 | Msa0940560 | 0.834705 | 2.567830e-56 | -8.615850e-47 |
| Msa0393750 | Msa0977100 | 0.836695 | 8.047836e-57 | -8.615850e-47 |
| Msa0393750 | Msa1063370 | 0.801003 | 1.105282e-48 | -8.615850e-47 |
| Msa0393750 | Msa1350700 | 0.811242 | 7.720602e-51 | -8.615850e-47 |
| Msa0393750 | Msa1439410 | 0.813156 | 2.952259e-51 | -8.615850e-47 |
| Msa0266220 | Msa0393750 | 0.805574 | 1.249732e-49 | -8.615850e-47 |
| Msa0287680 | Msa0393750 | 0.800667 | 1.294343e-48 | -8.615850e-47 |
| Msa0351780 | Msa0393750 | 0.920952 | 6.663009e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393750 | MtrunA17_Chr3g0079281 | 96.907 | 388 | 12 | 0 | 1 | 388 | 1 | 388 | 0.0 | 773 |
| Msa0393750 | MtrunA17_Chr4g0018441 | 73.454 | 388 | 93 | 4 | 1 | 385 | 1 | 381 | 0.0 | 570 |
| Msa0393750 | MtrunA17_Chr4g0056481 | 60.881 | 386 | 143 | 5 | 1 | 383 | 1 | 381 | 1.24e-162 | 461 |
| Msa0393750 | MtrunA17_Chr8g0382441 | 52.762 | 362 | 152 | 4 | 25 | 386 | 17 | 359 | 1.84e-130 | 379 |
| Msa0393750 | MtrunA17_Chr3g0115661 | 55.422 | 332 | 126 | 4 | 58 | 388 | 53 | 363 | 1.15e-126 | 369 |
| Msa0393750 | MtrunA17_Chr5g0425711 | 53.846 | 325 | 130 | 3 | 62 | 386 | 69 | 373 | 1.67e-118 | 348 |
| Msa0393750 | MtrunA17_Chr3g0126491 | 54.138 | 290 | 130 | 3 | 95 | 382 | 64 | 352 | 8.44e-110 | 326 |
| Msa0393750 | MtrunA17_Chr8g0347141 | 51.361 | 294 | 142 | 1 | 95 | 387 | 20 | 313 | 1.56e-106 | 316 |
| Msa0393750 | MtrunA17_Chr4g0018781 | 60.000 | 105 | 40 | 2 | 70 | 173 | 1 | 104 | 1.88e-33 | 120 |
| Msa0393750 | MtrunA17_Chr4g0018791 | 68.852 | 61 | 18 | 1 | 268 | 327 | 3 | 63 | 8.40e-22 | 88.6 |
| Msa0393750 | MtrunA17_Chr4g0041381 | 28.169 | 284 | 159 | 12 | 114 | 379 | 588 | 844 | 1.35e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393750 | AT4G22590.1 | 62.304 | 382 | 129 | 2 | 1 | 382 | 1 | 367 | 1.84e-166 | 471 |
| Msa0393750 | AT5G51460.2 | 60.204 | 392 | 139 | 6 | 1 | 385 | 1 | 382 | 7.35e-166 | 469 |
| Msa0393750 | AT5G51460.4 | 60.204 | 392 | 139 | 6 | 1 | 385 | 1 | 382 | 7.35e-166 | 469 |
| Msa0393750 | AT5G51460.1 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 4.79e-164 | 465 |
| Msa0393750 | AT5G51460.5 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 4.79e-164 | 465 |
| Msa0393750 | AT5G51460.3 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 4.79e-164 | 465 |
| Msa0393750 | AT4G12430.1 | 62.042 | 382 | 121 | 4 | 1 | 382 | 1 | 358 | 1.30e-156 | 446 |
| Msa0393750 | AT1G35910.1 | 55.172 | 348 | 138 | 4 | 45 | 387 | 32 | 366 | 1.41e-130 | 379 |
| Msa0393750 | AT4G39770.1 | 57.321 | 321 | 116 | 2 | 64 | 384 | 45 | 344 | 2.42e-125 | 365 |
| Msa0393750 | AT5G10100.3 | 54.012 | 324 | 131 | 3 | 62 | 384 | 58 | 364 | 9.55e-123 | 360 |
| Msa0393750 | AT5G10100.1 | 54.012 | 324 | 131 | 3 | 62 | 384 | 69 | 375 | 1.50e-122 | 359 |
| Msa0393750 | AT1G78090.1 | 50.272 | 368 | 153 | 7 | 31 | 387 | 23 | 371 | 5.83e-120 | 353 |
| Msa0393750 | AT5G65140.1 | 53.560 | 323 | 133 | 2 | 62 | 384 | 62 | 367 | 8.65e-119 | 349 |
| Msa0393750 | AT4G39770.2 | 56.958 | 309 | 112 | 2 | 64 | 372 | 45 | 332 | 1.62e-118 | 347 |
| Msa0393750 | AT2G22190.1 | 54.688 | 320 | 121 | 2 | 66 | 385 | 55 | 350 | 7.24e-118 | 347 |
| Msa0393750 | AT1G22210.1 | 53.894 | 321 | 132 | 2 | 67 | 387 | 14 | 318 | 1.20e-116 | 342 |
| Msa0393750 | AT5G10100.2 | 53.698 | 311 | 126 | 3 | 62 | 371 | 58 | 351 | 2.81e-116 | 343 |
| Msa0393750 | AT1G78090.2 | 50.425 | 353 | 145 | 7 | 31 | 372 | 23 | 356 | 7.51e-115 | 339 |
| Msa0393750 | AT2G22190.2 | 54.221 | 308 | 117 | 2 | 66 | 373 | 55 | 338 | 5.18e-112 | 332 |
| Msa0393750 | AT5G10100.4 | 50.617 | 324 | 122 | 4 | 62 | 384 | 69 | 355 | 4.90e-108 | 322 |
| Msa0393750 | AT5G65140.3 | 53.214 | 280 | 114 | 2 | 62 | 341 | 62 | 324 | 7.12e-102 | 305 |
| Msa0393750 | AT5G65140.2 | 51.953 | 256 | 106 | 2 | 62 | 317 | 62 | 300 | 1.60e-88 | 271 |
| Msa0393750 | AT1G70290.2 | 27.143 | 280 | 157 | 13 | 119 | 379 | 545 | 796 | 2.00e-11 | 66.2 |
| Msa0393750 | AT1G70290.1 | 27.143 | 280 | 157 | 13 | 119 | 379 | 583 | 834 | 2.85e-11 | 65.9 |
Find 114 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTCATTTATTGGTTTA+AGG | 0.080685 | 3_2:-7900972 | None:intergenic |
| TTAAAGATAGATTCTGATTT+TGG | 0.132673 | 3_2:+7900702 | Msa0393750:three_prime_UTR |
| CCATGAGTTAATCGTAAATT+TGG | 0.145955 | 3_2:-7899812 | None:intergenic |
| GAACAATTCCCTTCATTTAT+TGG | 0.150996 | 3_2:-7900979 | None:intergenic |
| TTTCTTCATCTTCTTATTCT+TGG | 0.164614 | 3_2:+7895991 | Msa0393750:five_prime_UTR |
| AATGAAGATGTGTATTTATA+AGG | 0.198078 | 3_2:-7895904 | None:intergenic |
| GACCGATGAAGATGCATTTA+AGG | 0.231051 | 3_2:+7900220 | Msa0393750:CDS |
| AGCGAGGTTAATAAAGGTTT+TGG | 0.247560 | 3_2:+7900349 | Msa0393750:CDS |
| CTCGATGATGTTCGTTCTAA+TGG | 0.251756 | 3_2:+7898054 | Msa0393750:CDS |
| AAACCGCGTTGCTTTCTTTA+GGG | 0.291548 | 3_2:-7900390 | None:intergenic |
| CCCTTCATTTATTGGTTTAA+GGG | 0.314433 | 3_2:-7900971 | None:intergenic |
| CTGGACTTAAAGCTTGTATT+AGG | 0.315562 | 3_2:+7896245 | Msa0393750:five_prime_UTR |
| TCGGTAGACCTAATGCAATT+AGG | 0.323769 | 3_2:-7898976 | None:intergenic |
| AGAAAAGTTGAAGTATTTGT+AGG | 0.326919 | 3_2:-7897988 | None:intergenic |
| TAAACCGCGTTGCTTTCTTT+AGG | 0.331760 | 3_2:-7900391 | None:intergenic |
| AGTCATGGAATGGACATAAT+TGG | 0.337966 | 3_2:+7898922 | Msa0393750:CDS |
| TAATCAAAATTATATAAAAT+AGG | 0.340161 | 3_2:-7901092 | None:intergenic |
| CAACAATAATAATGAGAGTT+AGG | 0.341888 | 3_2:-7895962 | None:intergenic |
| GAGGAGCATGATTTGTCTTC+AGG | 0.346590 | 3_2:-7897888 | None:intergenic |
| ATGAAGATGTGTATTTATAA+GGG | 0.356704 | 3_2:-7895903 | None:intergenic |
| TAATGTACAGAGTTGGGATT+TGG | 0.368930 | 3_2:+7899754 | Msa0393750:intron |
| CTAGAGTTTCCATCAGCAAT+TGG | 0.374834 | 3_2:+7898284 | Msa0393750:CDS |
| CGGTAGACCTAATGCAATTA+GGG | 0.375663 | 3_2:-7898975 | None:intergenic |
| TAGAGTTTCCATCAGCAATT+GGG | 0.394464 | 3_2:+7898285 | Msa0393750:CDS |
| ATAATCACCCTAATTGCATT+AGG | 0.394713 | 3_2:+7898968 | Msa0393750:CDS |
| AAGAAAATATCGATGGATAT+TGG | 0.400122 | 3_2:+7898114 | Msa0393750:CDS |
| CCTTGATCTTGTCCTTGTTA+AGG | 0.404552 | 3_2:-7897929 | None:intergenic |
| ACCAGTGATTGACTGGGATA+AGG | 0.413046 | 3_2:+7900017 | Msa0393750:CDS |
| TTCCATGACTACCAGCATAA+TGG | 0.413429 | 3_2:-7898909 | None:intergenic |
| CCAGTGATTGACTGGGATAA+GGG | 0.414884 | 3_2:+7900018 | Msa0393750:CDS |
| CTTCAGGTACATGAATTTGT+TGG | 0.418768 | 3_2:+7898874 | Msa0393750:intron |
| GTGTATTTATAAGGGGTGTT+TGG | 0.418771 | 3_2:-7895895 | None:intergenic |
| TGCTCAGGATTGTCAACAAT+TGG | 0.421587 | 3_2:-7898383 | None:intergenic |
| TAAAACTGGTACCTTCTTAT+CGG | 0.421696 | 3_2:-7898995 | None:intergenic |
| AGGTTCGACCAGTGATTGAC+TGG | 0.424416 | 3_2:+7900010 | Msa0393750:CDS |
| ACGATTCCACGGAAGAAGAT+AGG | 0.432313 | 3_2:+7898027 | Msa0393750:CDS |
| TGATTTGTCTTCAGGTCCAT+TGG | 0.443083 | 3_2:-7897880 | None:intergenic |
| GCAGCATCAGCTTCAGAAGA+TGG | 0.444694 | 3_2:-7898147 | None:intergenic |
| TTGTGGAAGCTGTAAATTCA+TGG | 0.446797 | 3_2:+7900835 | Msa0393750:three_prime_UTR |
| TTCTCAAGTCACTTGTGGTA+TGG | 0.448368 | 3_2:+7900623 | Msa0393750:CDS |
| GTTTCCATGTAATGCACGTT+AGG | 0.454235 | 3_2:+7895866 | Msa0393750:five_prime_UTR |
| TGCTGCTTATTTAACCTGGC+TGG | 0.454459 | 3_2:+7898164 | Msa0393750:CDS |
| CAGGATATTACATACATTGT+CGG | 0.457666 | 3_2:-7898417 | None:intergenic |
| CCCTTATCCCAGTCAATCAC+TGG | 0.457934 | 3_2:-7900018 | None:intergenic |
| TAAGCTCTGAAGAAGATCAT+AGG | 0.462078 | 3_2:+7900772 | Msa0393750:three_prime_UTR |
| GCCCTTAAACCAATAAATGA+AGG | 0.465117 | 3_2:+7900970 | Msa0393750:three_prime_UTR |
| TACACTCAGTGAGCAACTTA+CGG | 0.466005 | 3_2:-7899382 | None:intergenic |
| CTCCATTATGCTGGTAGTCA+TGG | 0.474044 | 3_2:+7898907 | Msa0393750:CDS |
| CAAATTACTAACCTTGCAAA+AGG | 0.474768 | 3_2:+7898317 | Msa0393750:CDS |
| CTGATGCTGCTTATTTAACC+TGG | 0.480480 | 3_2:+7898160 | Msa0393750:CDS |
| ATGATGTTCGTTCTAATGGT+TGG | 0.487662 | 3_2:+7898058 | Msa0393750:CDS |
| CATTGTTTCTTGATTACGAT+GGG | 0.487850 | 3_2:+7898351 | Msa0393750:CDS |
| GTCACCTAACGTGCATTACA+TGG | 0.490439 | 3_2:-7895870 | None:intergenic |
| AACCGCGTTGCTTTCTTTAG+GGG | 0.494436 | 3_2:-7900389 | None:intergenic |
| CAACATTACAACCGCGAAAG+AGG | 0.507585 | 3_2:+7895841 | Msa0393750:five_prime_UTR |
| AAGGTTAGTAATTTGTTCAA+AGG | 0.511038 | 3_2:-7898309 | None:intergenic |
| CATGGAAACAACCTCTTTCG+CGG | 0.511089 | 3_2:-7895852 | None:intergenic |
| TAGCGGAAGAAGCCGTGAAA+AGG | 0.511218 | 3_2:+7898585 | Msa0393750:CDS |
| ACAAGATCAAGGCTCGGCGC+AGG | 0.513806 | 3_2:+7897940 | Msa0393750:CDS |
| TTCCGTGGAATCGTTAGCGA+TGG | 0.515888 | 3_2:-7898018 | None:intergenic |
| CTCCGTAGATCTGGATCCAA+TGG | 0.519645 | 3_2:+7897864 | Msa0393750:intron |
| TTTCCGACTGCAATAATTAG+CGG | 0.519792 | 3_2:+7898568 | Msa0393750:CDS |
| CTCTGTAGTATAATGTATAG+AGG | 0.522728 | 3_2:+7900654 | Msa0393750:exon |
| CTCTCTTTGTGATCCTTCAG+AGG | 0.524465 | 3_2:+7900414 | Msa0393750:CDS |
| GAATTCTCCCTTAAATTGAA+AGG | 0.525250 | 3_2:-7901014 | None:intergenic |
| TGTACAGAGTTGGGATTTGG+TGG | 0.528879 | 3_2:+7899757 | Msa0393750:intron |
| CATTAGGTCTACCGATAAGA+AGG | 0.533743 | 3_2:+7898984 | Msa0393750:CDS |
| AACCTTAAATGCATCTTCAT+CGG | 0.535866 | 3_2:-7900222 | None:intergenic |
| TCAAAGGCCCCAATTGCTGA+TGG | 0.536930 | 3_2:-7898293 | None:intergenic |
| ACCATAAGAATTACCTCTGA+AGG | 0.544685 | 3_2:-7900427 | None:intergenic |
| ATCGGCAGGAATTCAGCAGC+AGG | 0.547400 | 3_2:-7899127 | None:intergenic |
| TACTCACAAGAAAATATCGA+TGG | 0.547593 | 3_2:+7898107 | Msa0393750:CDS |
| TTAACAGATCTCCATTATGC+TGG | 0.550969 | 3_2:+7898898 | Msa0393750:CDS |
| TCGGACATGAAAGCATGCTC+AGG | 0.552900 | 3_2:-7898398 | None:intergenic |
| GATGTGCTAGCTATATATAT+TGG | 0.554483 | 3_2:+7900188 | Msa0393750:CDS |
| CTTCCGCTAATTATTGCAGT+CGG | 0.556782 | 3_2:-7898571 | None:intergenic |
| TCAGATATAGACGGTCTAAG+AGG | 0.565527 | 3_2:-7898946 | None:intergenic |
| GAAAGAGAAGAAGAGAAGAG+AGG | 0.565630 | 3_2:-7895934 | None:intergenic |
| CCTTAACAAGGACAAGATCA+AGG | 0.569283 | 3_2:+7897929 | Msa0393750:CDS |
| TTATGCTGGTAGTCATGGAA+TGG | 0.572153 | 3_2:+7898912 | Msa0393750:CDS |
| GGAATTTCTCAAGTCACTTG+TGG | 0.574443 | 3_2:+7900618 | Msa0393750:CDS |
| GCAGGAATTCAGCAGCAGGT+TGG | 0.578451 | 3_2:-7899123 | None:intergenic |
| ATACCTCATCAATCATCGGC+AGG | 0.579445 | 3_2:-7899141 | None:intergenic |
| CCAAATTTACGATTAACTCA+TGG | 0.579608 | 3_2:+7899812 | Msa0393750:CDS |
| CTGACACTGCAACCTTAACA+AGG | 0.584321 | 3_2:+7897917 | Msa0393750:CDS |
| ATATATAGCTAGCACATCAT+CGG | 0.585091 | 3_2:-7900183 | None:intergenic |
| TGAAGATGTGTATTTATAAG+GGG | 0.590196 | 3_2:-7895902 | None:intergenic |
| AAGATTATCAAAATCTACCA+AGG | 0.590336 | 3_2:+7900882 | Msa0393750:three_prime_UTR |
| CTATATATATTGGTGACGAT+CGG | 0.591664 | 3_2:+7900198 | Msa0393750:CDS |
| CCCTTAAACCAATAAATGAA+GGG | 0.593813 | 3_2:+7900971 | Msa0393750:three_prime_UTR |
| CGCGTTGCTTTCTTTAGGGG+CGG | 0.594578 | 3_2:-7900386 | None:intergenic |
| GTGCATACCTCATCAATCAT+CGG | 0.605918 | 3_2:-7899145 | None:intergenic |
| AGAATTCCTATCTTCTTCCG+TGG | 0.605970 | 3_2:-7898033 | None:intergenic |
| ATATCGATGGATATTGGTCA+TGG | 0.606467 | 3_2:+7898120 | Msa0393750:CDS |
| GCATTGTTTCTTGATTACGA+TGG | 0.607237 | 3_2:+7898350 | Msa0393750:CDS |
| GTCCATCGCTAACGATTCCA+CGG | 0.607941 | 3_2:+7898016 | Msa0393750:CDS |
| ACGATTAACTCATGGTCGGA+AGG | 0.614382 | 3_2:+7899820 | Msa0393750:CDS |
| GTATGTGTTTCATACCAGCC+AGG | 0.620718 | 3_2:-7898178 | None:intergenic |
| GGAGAGCATGACAGACTCGA+AGG | 0.621757 | 3_2:-7897967 | None:intergenic |
| AGATTATCAAAATCTACCAA+GGG | 0.625044 | 3_2:+7900883 | Msa0393750:three_prime_UTR |
| AGAGTTTCCATCAGCAATTG+GGG | 0.625927 | 3_2:+7898286 | Msa0393750:CDS |
| ATTTACGATTAACTCATGGT+CGG | 0.632995 | 3_2:+7899816 | Msa0393750:CDS |
| GAGTGTACAAAAGACATCAA+AGG | 0.636577 | 3_2:+7899398 | Msa0393750:CDS |
| ACAAGGACAAGATCAAGGCT+CGG | 0.641941 | 3_2:+7897934 | Msa0393750:CDS |
| GGGTGATTATCAGATATAGA+CGG | 0.658935 | 3_2:-7898955 | None:intergenic |
| GATTATCAAAATCTACCAAG+GGG | 0.673290 | 3_2:+7900884 | Msa0393750:three_prime_UTR |
| GTTGCAGTGTCAGCAATGCG+AGG | 0.673341 | 3_2:-7897907 | None:intergenic |
| GGTTCGACCAGTGATTGACT+GGG | 0.682318 | 3_2:+7900011 | Msa0393750:CDS |
| GCGTGCTGCTGTTAAAAGTG+TGG | 0.708932 | 3_2:+7898537 | Msa0393750:CDS |
| ACATTATCGCAATGTAGACG+AGG | 0.713352 | 3_2:+7899457 | Msa0393750:CDS |
| TTATCGCAATGTAGACGAGG+AGG | 0.714342 | 3_2:+7899460 | Msa0393750:CDS |
| ATTATCAAAATCTACCAAGG+GGG | 0.730497 | 3_2:+7900885 | Msa0393750:three_prime_UTR |
| ATTCCTGCCGATGATTGATG+AGG | 0.731711 | 3_2:+7899138 | Msa0393750:CDS |
| CGCCCCTAAAGAAAGCAACG+CGG | 0.751129 | 3_2:+7900387 | Msa0393750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAACTGATATAAAA+TGG | + | chr3_2:7900310-7900329 | Msa0393750:intron | 10.0% |
| !!! | TAAATAATATTTCTTTTCTA+GGG | - | chr3_2:7900920-7900939 | None:intergenic | 10.0% |
| !!! | TTAAATAATATTTCTTTTCT+AGG | - | chr3_2:7900921-7900940 | None:intergenic | 10.0% |
| !!! | CTTCTTTATTTGTTTTTTTT+TGG | + | chr3_2:7896293-7896312 | Msa0393750:intron | 15.0% |
| !!! | TTTTTAAGATTCTTGAAATT+TGG | + | chr3_2:7896342-7896361 | Msa0393750:intron | 15.0% |
| !!! | TTGGTTTGTTATTATTTTAA+TGG | + | chr3_2:7896387-7896406 | Msa0393750:intron | 15.0% |
| !! | GAAATAAGTTATTAAAGAAA+AGG | - | chr3_2:7896613-7896632 | None:intergenic | 15.0% |
| !! | TCTTTAATAACTTATTTCAT+AGG | + | chr3_2:7896615-7896634 | Msa0393750:intron | 15.0% |
| !! | CTTTAATAACTTATTTCATA+GGG | + | chr3_2:7896616-7896635 | Msa0393750:intron | 15.0% |
| !!! | TTATATTACTTTAGTTTTCA+GGG | - | chr3_2:7896717-7896736 | None:intergenic | 15.0% |
| !!! | ATTATATTACTTTAGTTTTC+AGG | - | chr3_2:7896718-7896737 | None:intergenic | 15.0% |
| !!! | AGTAATATAATTTGTACATT+TGG | + | chr3_2:7896727-7896746 | Msa0393750:intron | 15.0% |
| !!! | TTATTTTACTTGTTATTGAA+CGG | - | chr3_2:7897374-7897393 | None:intergenic | 15.0% |
| !!! | TGTTATTTTTTATATCATGA+TGG | + | chr3_2:7897527-7897546 | Msa0393750:intron | 15.0% |
| !! | AATTTAATAGGTAGAATAAT+TGG | - | chr3_2:7897574-7897593 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTGTTAAAAGTTT+TGG | + | chr3_2:7897766-7897785 | Msa0393750:intron | 15.0% |
| !!! | ATCAATTTTGTTCTAATTTA+AGG | + | chr3_2:7897813-7897832 | Msa0393750:intron | 15.0% |
| !! | GAAGATTATAAATCAATATA+GGG | - | chr3_2:7899072-7899091 | None:intergenic | 15.0% |
| !! | AGAAGATTATAAATCAATAT+AGG | - | chr3_2:7899073-7899092 | None:intergenic | 15.0% |
| !!! | TTATAATCTTCTAAAATTAC+AGG | + | chr3_2:7899081-7899100 | Msa0393750:intron | 15.0% |
| !!! | TATAATCTTCTAAAATTACA+GGG | + | chr3_2:7899082-7899101 | Msa0393750:intron | 15.0% |
| !!! | AATCTAGAATAAAAATTGAT+AGG | - | chr3_2:7899204-7899223 | None:intergenic | 15.0% |
| !! | ATTGAAAACAACAAAAAAAT+AGG | - | chr3_2:7899546-7899565 | None:intergenic | 15.0% |
| !!! | TTAATTTGTTGATTATGTAA+TGG | + | chr3_2:7900078-7900097 | Msa0393750:intron | 15.0% |
| !! | TATATCAGTTATAAAAAGTA+AGG | - | chr3_2:7900307-7900326 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTTCTGAATTAT+TGG | + | chr3_2:7900942-7900961 | Msa0393750:three_prime_UTR | 15.0% |
| !! | AATTGAAAGGAAAAAAATAA+AGG | - | chr3_2:7901004-7901023 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCCTTTCAATTTA+AGG | + | chr3_2:7901006-7901025 | Msa0393750:three_prime_UTR | 15.0% |
| !!! | TTTTTTTCCTTTCAATTTAA+GGG | + | chr3_2:7901007-7901026 | Msa0393750:three_prime_UTR | 15.0% |
| !!! | TTCATTTTTTACATGTAATT+TGG | + | chr3_2:7901044-7901063 | Msa0393750:three_prime_UTR | 15.0% |
| !! | ATGAAGATGTGTATTTATAA+GGG | - | chr3_2:7895906-7895925 | None:intergenic | 20.0% |
| !! | AATGAAGATGTGTATTTATA+AGG | - | chr3_2:7895907-7895926 | None:intergenic | 20.0% |
| !! | GTTAATATTAGAAACATGTT+TGG | - | chr3_2:7896134-7896153 | None:intergenic | 20.0% |
| !!! | CTTTATTTGTTTTTTTTTGG+AGG | + | chr3_2:7896296-7896315 | Msa0393750:intron | 20.0% |
| !! | GAATAATAACCATTAGTAAA+AGG | - | chr3_2:7896493-7896512 | None:intergenic | 20.0% |
| !!! | AACTTTTTCAAAGTTTTGTT+TGG | - | chr3_2:7897505-7897524 | None:intergenic | 20.0% |
| !! | TTGCATATGCATAATTTAAT+AGG | - | chr3_2:7897586-7897605 | None:intergenic | 20.0% |
| !!! | TTGGTTTTAAAGTAGAAATT+TGG | + | chr3_2:7897785-7897804 | Msa0393750:intron | 20.0% |
| !!! | TTCTAAAAGTATCTTTTGAA+AGG | + | chr3_2:7899044-7899063 | Msa0393750:intron | 20.0% |
| !!! | TCTAAAAGTATCTTTTGAAA+GGG | + | chr3_2:7899045-7899064 | Msa0393750:intron | 20.0% |
| !!! | TCATTTTCTCAAATTCTTAT+TGG | + | chr3_2:7899272-7899291 | Msa0393750:intron | 20.0% |
| !!! | GTTAAAAATGGAATCATTTT+AGG | - | chr3_2:7899670-7899689 | None:intergenic | 20.0% |
| !! | TGAATATGAAACTAAATAAG+AGG | - | chr3_2:7899732-7899751 | None:intergenic | 20.0% |
| !! | GAATAATGTTTGTATCATTA+GGG | + | chr3_2:7900540-7900559 | Msa0393750:intron | 20.0% |
| !!! | TTAAAGATAGATTCTGATTT+TGG | + | chr3_2:7900702-7900721 | Msa0393750:three_prime_UTR | 20.0% |
| !!! | TGAGAAAATTTCAATTTTCA+AGG | + | chr3_2:7900732-7900751 | Msa0393750:three_prime_UTR | 20.0% |
| !!! | GAGAAAATTTCAATTTTCAA+GGG | + | chr3_2:7900733-7900752 | Msa0393750:three_prime_UTR | 20.0% |
| ! | TGAAGATGTGTATTTATAAG+GGG | - | chr3_2:7895905-7895924 | None:intergenic | 25.0% |
| ! | CAACAATAATAATGAGAGTT+AGG | - | chr3_2:7895965-7895984 | None:intergenic | 25.0% |
| ! | TTTCTTCATCTTCTTATTCT+TGG | + | chr3_2:7895991-7896010 | Msa0393750:five_prime_UTR | 25.0% |
| !! | TCTTTCACTTTCTTTTCTTA+GGG | + | chr3_2:7896037-7896056 | Msa0393750:intron | 25.0% |
| ! | ATAAAGGAAAGACAAAAAGA+AGG | - | chr3_2:7896104-7896123 | None:intergenic | 25.0% |
| !!! | TTGTTGACTTTCTATTGTTT+TGG | + | chr3_2:7896423-7896442 | Msa0393750:intron | 25.0% |
| !!! | TTGTGTACTTTCTTTTGATT+TGG | + | chr3_2:7896540-7896559 | Msa0393750:intron | 25.0% |
| !! | TTTGAAATCACTCATGTTAT+AGG | + | chr3_2:7896890-7896909 | Msa0393750:intron | 25.0% |
| ! | AGCAATTATACAAAGAACAT+GGG | - | chr3_2:7897060-7897079 | None:intergenic | 25.0% |
| ! | AAGCAATTATACAAAGAACA+TGG | - | chr3_2:7897061-7897080 | None:intergenic | 25.0% |
| !! | TTTGAAATCACTCATGTTAT+AGG | + | chr3_2:7896890-7896909 | Msa0393750:intron | 25.0% |
| ! | AGCAATTATACAAAGAACAT+GGG | - | chr3_2:7897060-7897079 | None:intergenic | 25.0% |
| ! | AAGCAATTATACAAAGAACA+TGG | - | chr3_2:7897061-7897080 | None:intergenic | 25.0% |
| !! | AGAAAAGTTGAAGTATTTGT+AGG | - | chr3_2:7897991-7898010 | None:intergenic | 25.0% |
| ! | AAGAAAATATCGATGGATAT+TGG | + | chr3_2:7898114-7898133 | Msa0393750:CDS | 25.0% |
| ! | TATGAAAAAGGAAACGAATA+AGG | - | chr3_2:7898254-7898273 | None:intergenic | 25.0% |
| ! | AGCTGCAAAAATTATGAAAA+AGG | - | chr3_2:7898266-7898285 | None:intergenic | 25.0% |
| !!! | AAGGTTAGTAATTTGTTCAA+AGG | - | chr3_2:7898312-7898331 | None:intergenic | 25.0% |
| ! | ACAAGAGAAGAAAAATAATC+AGG | - | chr3_2:7898478-7898497 | None:intergenic | 25.0% |
| ! | AAAAGAGAAAAATGAAGTAC+AGG | - | chr3_2:7898647-7898666 | None:intergenic | 25.0% |
| ! | ATTTACATTTCTCTATATGC+AGG | - | chr3_2:7898683-7898702 | None:intergenic | 25.0% |
| ! | TGTAAAAAAATGTTCGTGTT+AGG | + | chr3_2:7898820-7898839 | Msa0393750:intron | 25.0% |
| ! | ATTCATATAATGTACAGAGT+TGG | + | chr3_2:7899747-7899766 | Msa0393750:intron | 25.0% |
| ! | TTCATATAATGTACAGAGTT+GGG | + | chr3_2:7899748-7899767 | Msa0393750:intron | 25.0% |
| !!! | ACGTGTTTTTGATATTATGA+AGG | + | chr3_2:7899784-7899803 | Msa0393750:CDS | 25.0% |
| ! | TATAGTTACTGATATTGTTC+AGG | + | chr3_2:7899981-7900000 | Msa0393750:intron | 25.0% |
| !! | ATTTAAGGTTAATATGTTGC+TGG | + | chr3_2:7900235-7900254 | Msa0393750:intron | 25.0% |
| ! | AATTGCAACAAAACTTTCAA+AGG | - | chr3_2:7900474-7900493 | None:intergenic | 25.0% |
| ! | GGAATAATGTTTGTATCATT+AGG | + | chr3_2:7900539-7900558 | Msa0393750:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+AGG | - | chr3_2:7900566-7900585 | None:intergenic | 25.0% |
| !! | CTTATTTAAAGTCAAACTTG+TGG | + | chr3_2:7900581-7900600 | Msa0393750:intron | 25.0% |
| !! | ATAGATTCTGATTTTGGATT+TGG | + | chr3_2:7900708-7900727 | Msa0393750:three_prime_UTR | 25.0% |
| ! | AAGATTATCAAAATCTACCA+AGG | + | chr3_2:7900882-7900901 | Msa0393750:three_prime_UTR | 25.0% |
| ! | AGATTATCAAAATCTACCAA+GGG | + | chr3_2:7900883-7900902 | Msa0393750:three_prime_UTR | 25.0% |
| ! | CTCTTTCACTTTCTTTTCTT+AGG | + | chr3_2:7896036-7896055 | Msa0393750:intron | 30.0% |
| ! | CATGTTTGGTGAGATAATAA+AGG | - | chr3_2:7896120-7896139 | None:intergenic | 30.0% |
| !! | GCTAAATATTTTGAACTAGC+TGG | + | chr3_2:7896226-7896245 | Msa0393750:five_prime_UTR | 30.0% |
| ! | TTTCCTTTGCCTTTTACTAA+TGG | + | chr3_2:7896481-7896500 | Msa0393750:intron | 30.0% |
| TAACCATTAGTAAAAGGCAA+AGG | - | chr3_2:7896487-7896506 | None:intergenic | 30.0% | |
| !! | ATTAAAGAAAAGGCACGTTT+TGG | - | chr3_2:7896603-7896622 | None:intergenic | 30.0% |
| TTTCATAGGGTAAAGTGATT+AGG | + | chr3_2:7896629-7896648 | Msa0393750:intron | 30.0% | |
| GTAAAGTGATTAGGTAGTTA+TGG | + | chr3_2:7896638-7896657 | Msa0393750:intron | 30.0% | |
| ! | CCTCTGATTTAAAACTTCTT+CGG | - | chr3_2:7896681-7896700 | None:intergenic | 30.0% |
| ACAAATCTTCCTTGCATTAA+TGG | + | chr3_2:7896915-7896934 | Msa0393750:intron | 30.0% | |
| ACAAATCTTCCTTGCATTAA+TGG | + | chr3_2:7896915-7896934 | Msa0393750:intron | 30.0% | |
| AAGTTGACATCATTCTTCAT+TGG | + | chr3_2:7897436-7897455 | Msa0393750:intron | 30.0% | |
| TAGAAGTCTGCTAGAATTTA+TGG | + | chr3_2:7897462-7897481 | Msa0393750:intron | 30.0% | |
| ATCATGATGGTTATTTGAGA+TGG | + | chr3_2:7897540-7897559 | Msa0393750:intron | 30.0% | |
| ! | AATACTTCAACTTTTCTGCA+TGG | + | chr3_2:7897994-7898013 | Msa0393750:CDS | 30.0% |
| ! | ATCGATATTTTCTTGTGAGT+AGG | - | chr3_2:7898108-7898127 | None:intergenic | 30.0% |
| TACTCACAAGAAAATATCGA+TGG | + | chr3_2:7898107-7898126 | Msa0393750:CDS | 30.0% | |
| TCCACAACAAATTACATAGA+GGG | - | chr3_2:7898212-7898231 | None:intergenic | 30.0% | |
| TTCCACAACAAATTACATAG+AGG | - | chr3_2:7898213-7898232 | None:intergenic | 30.0% | |
| !! | TGTAATTTGTTGTGGAAGTT+CGG | + | chr3_2:7898216-7898235 | Msa0393750:intron | 30.0% |
| CAAATTACTAACCTTGCAAA+AGG | + | chr3_2:7898317-7898336 | Msa0393750:CDS | 30.0% | |
| ! | CATTGTTTCTTGATTACGAT+GGG | + | chr3_2:7898351-7898370 | Msa0393750:CDS | 30.0% |
| CAGGATATTACATACATTGT+CGG | - | chr3_2:7898420-7898439 | None:intergenic | 30.0% | |
| ATGTATGTAATATCCTGCAA+AGG | + | chr3_2:7898423-7898442 | Msa0393750:intron | 30.0% | |
| AAATAAGGTGCAAAAATGGT+TGG | - | chr3_2:7898854-7898873 | None:intergenic | 30.0% | |
| GAAGAAATAAGGTGCAAAAA+TGG | - | chr3_2:7898858-7898877 | None:intergenic | 30.0% | |
| !! | TTTTTGCACCTTATTTCTTC+AGG | + | chr3_2:7898858-7898877 | Msa0393750:intron | 30.0% |
| TTCATGTACCTGAAGAAATA+AGG | - | chr3_2:7898869-7898888 | None:intergenic | 30.0% | |
| ATAATCACCCTAATTGCATT+AGG | + | chr3_2:7898968-7898987 | Msa0393750:CDS | 30.0% | |
| TAAAACTGGTACCTTCTTAT+CGG | - | chr3_2:7898998-7899017 | None:intergenic | 30.0% | |
| ! | AGTGAAGTAAGATCTAAAAC+TGG | - | chr3_2:7899012-7899031 | None:intergenic | 30.0% |
| !! | TCTTCTAAAATTACAGGGTA+AGG | + | chr3_2:7899087-7899106 | Msa0393750:intron | 30.0% |
| TGTAATACATATGTCAGTGT+TGG | - | chr3_2:7899242-7899261 | None:intergenic | 30.0% | |
| GAGAATCAAAAAGGAAAGAA+GGG | - | chr3_2:7899500-7899519 | None:intergenic | 30.0% | |
| CCATGAGTTAATCGTAAATT+TGG | - | chr3_2:7899815-7899834 | None:intergenic | 30.0% | |
| CCAAATTTACGATTAACTCA+TGG | + | chr3_2:7899812-7899831 | Msa0393750:CDS | 30.0% | |
| ATTTACGATTAACTCATGGT+CGG | + | chr3_2:7899816-7899835 | Msa0393750:CDS | 30.0% | |
| TAACAGACATGTCTCTTAAA+AGG | - | chr3_2:7899946-7899965 | None:intergenic | 30.0% | |
| !! | TGATATTGTTCAGGTTTTAG+AGG | + | chr3_2:7899990-7900009 | Msa0393750:intron | 30.0% |
| ! | CACTAGACATGTTTTCATTT+AGG | + | chr3_2:7900149-7900168 | Msa0393750:intron | 30.0% |
| ATATATAGCTAGCACATCAT+CGG | - | chr3_2:7900186-7900205 | None:intergenic | 30.0% | |
| GATGTGCTAGCTATATATAT+TGG | + | chr3_2:7900188-7900207 | Msa0393750:CDS | 30.0% | |
| !! | CTATATATATTGGTGACGAT+CGG | + | chr3_2:7900198-7900217 | Msa0393750:CDS | 30.0% |
| AACCTTAAATGCATCTTCAT+CGG | - | chr3_2:7900225-7900244 | None:intergenic | 30.0% | |
| ! | GCAATTTTGTACATTTGCTT+TGG | + | chr3_2:7900488-7900507 | Msa0393750:intron | 30.0% |
| CTCTGTAGTATAATGTATAG+AGG | + | chr3_2:7900654-7900673 | Msa0393750:exon | 30.0% | |
| !! | TTCAATTTTCAAGGGTTTCT+TGG | + | chr3_2:7900741-7900760 | Msa0393750:three_prime_UTR | 30.0% |
| !!! | TTTTTTGTTCAAAGCTCTTG+TGG | + | chr3_2:7900818-7900837 | Msa0393750:three_prime_UTR | 30.0% |
| GATTATCAAAATCTACCAAG+GGG | + | chr3_2:7900884-7900903 | Msa0393750:three_prime_UTR | 30.0% | |
| ATTATCAAAATCTACCAAGG+GGG | + | chr3_2:7900885-7900904 | Msa0393750:three_prime_UTR | 30.0% | |
| !! | CCCTTCATTTATTGGTTTAA+GGG | - | chr3_2:7900974-7900993 | None:intergenic | 30.0% |
| CCCTTAAACCAATAAATGAA+GGG | + | chr3_2:7900971-7900990 | Msa0393750:three_prime_UTR | 30.0% | |
| !! | TCCCTTCATTTATTGGTTTA+AGG | - | chr3_2:7900975-7900994 | None:intergenic | 30.0% |
| GAACAATTCCCTTCATTTAT+TGG | - | chr3_2:7900982-7901001 | None:intergenic | 30.0% | |
| GAATTCTCCCTTAAATTGAA+AGG | - | chr3_2:7901017-7901036 | None:intergenic | 30.0% | |
| !! | GTGTATTTATAAGGGGTGTT+TGG | - | chr3_2:7895898-7895917 | None:intergenic | 35.0% |
| CTGGACTTAAAGCTTGTATT+AGG | + | chr3_2:7896245-7896264 | Msa0393750:five_prime_UTR | 35.0% | |
| ! | CTTGCAATGTGCAATGTTTT+TGG | + | chr3_2:7896368-7896387 | Msa0393750:intron | 35.0% |
| AAGTGATTAGGTAGTTATGG+TGG | + | chr3_2:7896641-7896660 | Msa0393750:intron | 35.0% | |
| !!! | CCGAAGAAGTTTTAAATCAG+AGG | + | chr3_2:7896678-7896697 | Msa0393750:intron | 35.0% |
| TGTTATGCACGTACAAGTAT+TGG | - | chr3_2:7896766-7896785 | None:intergenic | 35.0% | |
| CTGAATAAGCCATTAATGCA+AGG | - | chr3_2:7896927-7896946 | None:intergenic | 35.0% | |
| TATGCACGTACGTTATTGAA+CGG | - | chr3_2:7897119-7897138 | None:intergenic | 35.0% | |
| CTGAATAAGCCATTAATGCA+AGG | - | chr3_2:7896927-7896946 | None:intergenic | 35.0% | |
| TGTTATTGAACGGTTGAGAA+TGG | - | chr3_2:7897364-7897383 | None:intergenic | 35.0% | |
| TGTAAAATTCTCCGTAGATC+TGG | + | chr3_2:7897855-7897874 | Msa0393750:intron | 35.0% | |
| ATGATGTTCGTTCTAATGGT+TGG | + | chr3_2:7898058-7898077 | Msa0393750:CDS | 35.0% | |
| ATATCGATGGATATTGGTCA+TGG | + | chr3_2:7898120-7898139 | Msa0393750:CDS | 35.0% | |
| !! | ACCCTCTATGTAATTTGTTG+TGG | + | chr3_2:7898208-7898227 | Msa0393750:intron | 35.0% |
| TAGAGTTTCCATCAGCAATT+GGG | + | chr3_2:7898285-7898304 | Msa0393750:CDS | 35.0% | |
| ! | CTATTTTCTTGCCTTTTGCA+AGG | - | chr3_2:7898331-7898350 | None:intergenic | 35.0% |
| ! | GCATTGTTTCTTGATTACGA+TGG | + | chr3_2:7898350-7898369 | Msa0393750:CDS | 35.0% |
| TTTCCGACTGCAATAATTAG+CGG | + | chr3_2:7898568-7898587 | Msa0393750:CDS | 35.0% | |
| ! | TTTCTTCAGCTACCTTTTCA+CGG | - | chr3_2:7898600-7898619 | None:intergenic | 35.0% |
| !! | ATTTTTCAACTGTACCAGAG+GGG | - | chr3_2:7898779-7898798 | None:intergenic | 35.0% |
| !! | CATTTTTCAACTGTACCAGA+GGG | - | chr3_2:7898780-7898799 | None:intergenic | 35.0% |
| !! | TCATTTTTCAACTGTACCAG+AGG | - | chr3_2:7898781-7898800 | None:intergenic | 35.0% |
| TACAAGTAAAGTGACACGAA+TGG | - | chr3_2:7898804-7898823 | None:intergenic | 35.0% | |
| CTTCAGGTACATGAATTTGT+TGG | + | chr3_2:7898874-7898893 | Msa0393750:intron | 35.0% | |
| TTAACAGATCTCCATTATGC+TGG | + | chr3_2:7898898-7898917 | Msa0393750:CDS | 35.0% | |
| AGTCATGGAATGGACATAAT+TGG | + | chr3_2:7898922-7898941 | Msa0393750:CDS | 35.0% | |
| GGGTGATTATCAGATATAGA+CGG | - | chr3_2:7898958-7898977 | None:intergenic | 35.0% | |
| GAGTGTACAAAAGACATCAA+AGG | + | chr3_2:7899398-7899417 | Msa0393750:CDS | 35.0% | |
| CGAGAATCAAAAAGGAAAGA+AGG | - | chr3_2:7899501-7899520 | None:intergenic | 35.0% | |
| TACAAGAGCGAGAATCAAAA+AGG | - | chr3_2:7899509-7899528 | None:intergenic | 35.0% | |
| !! | CGCGATAAGTTGGTTAAAAA+TGG | - | chr3_2:7899682-7899701 | None:intergenic | 35.0% |
| TGATGAAATACGCGATAAGT+TGG | - | chr3_2:7899692-7899711 | None:intergenic | 35.0% | |
| ACTTATCGCGTATTTCATCA+TGG | + | chr3_2:7899692-7899711 | Msa0393750:intron | 35.0% | |
| TAATGTACAGAGTTGGGATT+TGG | + | chr3_2:7899754-7899773 | Msa0393750:intron | 35.0% | |
| ! | ACATTTTTGCTCGAATCACT+TGG | + | chr3_2:7900051-7900070 | Msa0393750:CDS | 35.0% |
| !! | GGTTAGTTTGCGTATATTCA+AGG | + | chr3_2:7900099-7900118 | Msa0393750:intron | 35.0% |
| GATATAAAATGGACCGTAAC+AGG | + | chr3_2:7900321-7900340 | Msa0393750:intron | 35.0% | |
| !! | GTTTTGAGCGAGGTTAATAA+AGG | + | chr3_2:7900343-7900362 | Msa0393750:CDS | 35.0% |
| ! | AGCGAGGTTAATAAAGGTTT+TGG | + | chr3_2:7900349-7900368 | Msa0393750:CDS | 35.0% |
| TCCTTCAGAGGTAATTCTTA+TGG | + | chr3_2:7900426-7900445 | Msa0393750:intron | 35.0% | |
| ACCATAAGAATTACCTCTGA+AGG | - | chr3_2:7900430-7900449 | None:intergenic | 35.0% | |
| ! | CATGTTGTTTGCTAGTACAT+TGG | + | chr3_2:7900518-7900537 | Msa0393750:intron | 35.0% |
| !! | TAAGCTCTGAAGAAGATCAT+AGG | + | chr3_2:7900772-7900791 | Msa0393750:three_prime_UTR | 35.0% |
| TTGTGGAAGCTGTAAATTCA+TGG | + | chr3_2:7900835-7900854 | Msa0393750:three_prime_UTR | 35.0% | |
| GCCCTTAAACCAATAAATGA+AGG | + | chr3_2:7900970-7900989 | Msa0393750:three_prime_UTR | 35.0% | |
| GTTTCCATGTAATGCACGTT+AGG | + | chr3_2:7895866-7895885 | Msa0393750:five_prime_UTR | 40.0% | |
| GAAAGAGAAGAAGAGAAGAG+AGG | - | chr3_2:7895937-7895956 | None:intergenic | 40.0% | |
| CGTTATTGAACGGTTGAGAA+TGG | - | chr3_2:7897109-7897128 | None:intergenic | 40.0% | |
| ! | TGATTTGTCTTCAGGTCCAT+TGG | - | chr3_2:7897883-7897902 | None:intergenic | 40.0% |
| CCTTGATCTTGTCCTTGTTA+AGG | - | chr3_2:7897932-7897951 | None:intergenic | 40.0% | |
| CCTTAACAAGGACAAGATCA+AGG | + | chr3_2:7897929-7897948 | Msa0393750:CDS | 40.0% | |
| AGAATTCCTATCTTCTTCCG+TGG | - | chr3_2:7898036-7898055 | None:intergenic | 40.0% | |
| CTCGATGATGTTCGTTCTAA+TGG | + | chr3_2:7898054-7898073 | Msa0393750:CDS | 40.0% | |
| ! | CTGATGCTGCTTATTTAACC+TGG | + | chr3_2:7898160-7898179 | Msa0393750:CDS | 40.0% |
| CTAGAGTTTCCATCAGCAAT+TGG | + | chr3_2:7898284-7898303 | Msa0393750:CDS | 40.0% | |
| AGAGTTTCCATCAGCAATTG+GGG | + | chr3_2:7898286-7898305 | Msa0393750:CDS | 40.0% | |
| TGCTCAGGATTGTCAACAAT+TGG | - | chr3_2:7898386-7898405 | None:intergenic | 40.0% | |
| TCTGCAGATGTTACATGATC+AGG | - | chr3_2:7898516-7898535 | None:intergenic | 40.0% | |
| CTTCCGCTAATTATTGCAGT+CGG | - | chr3_2:7898574-7898593 | None:intergenic | 40.0% | |
| TTCCATGACTACCAGCATAA+TGG | - | chr3_2:7898912-7898931 | None:intergenic | 40.0% | |
| TTATGCTGGTAGTCATGGAA+TGG | + | chr3_2:7898912-7898931 | Msa0393750:CDS | 40.0% | |
| TCAGATATAGACGGTCTAAG+AGG | - | chr3_2:7898949-7898968 | None:intergenic | 40.0% | |
| CGGTAGACCTAATGCAATTA+GGG | - | chr3_2:7898978-7898997 | None:intergenic | 40.0% | |
| TCGGTAGACCTAATGCAATT+AGG | - | chr3_2:7898979-7898998 | None:intergenic | 40.0% | |
| CATTAGGTCTACCGATAAGA+AGG | + | chr3_2:7898984-7899003 | Msa0393750:CDS | 40.0% | |
| GTGCATACCTCATCAATCAT+CGG | - | chr3_2:7899148-7899167 | None:intergenic | 40.0% | |
| !! | TCTTATTGGTGTCAGCATGT+TGG | + | chr3_2:7899286-7899305 | Msa0393750:intron | 40.0% |
| TAGTGCTCATAGATCATGAC+TGG | + | chr3_2:7899342-7899361 | Msa0393750:intron | 40.0% | |
| TACACTCAGTGAGCAACTTA+CGG | - | chr3_2:7899385-7899404 | None:intergenic | 40.0% | |
| ACATTATCGCAATGTAGACG+AGG | + | chr3_2:7899457-7899476 | Msa0393750:CDS | 40.0% | |
| GACCGATGAAGATGCATTTA+AGG | + | chr3_2:7900220-7900239 | Msa0393750:CDS | 40.0% | |
| ! | AAACCGCGTTGCTTTCTTTA+GGG | - | chr3_2:7900393-7900412 | None:intergenic | 40.0% |
| ! | TAAACCGCGTTGCTTTCTTT+AGG | - | chr3_2:7900394-7900413 | None:intergenic | 40.0% |
| !! | TGTATCATTAGGGCCTTGTT+TGG | + | chr3_2:7900550-7900569 | Msa0393750:intron | 40.0% |
| GTCAAACTTGTGGTATATGC+AGG | + | chr3_2:7900591-7900610 | Msa0393750:intron | 40.0% | |
| GGAATTTCTCAAGTCACTTG+TGG | + | chr3_2:7900618-7900637 | Msa0393750:CDS | 40.0% | |
| TTCTCAAGTCACTTGTGGTA+TGG | + | chr3_2:7900623-7900642 | Msa0393750:CDS | 40.0% | |
| CAACATTACAACCGCGAAAG+AGG | + | chr3_2:7895841-7895860 | Msa0393750:five_prime_UTR | 45.0% | |
| CATGGAAACAACCTCTTTCG+CGG | - | chr3_2:7895855-7895874 | None:intergenic | 45.0% | |
| GTCACCTAACGTGCATTACA+TGG | - | chr3_2:7895873-7895892 | None:intergenic | 45.0% | |
| GCAAAGGAAAGCAACACGAA+AGG | - | chr3_2:7896471-7896490 | None:intergenic | 45.0% | |
| GTCCATTGGATCCAGATCTA+CGG | - | chr3_2:7897869-7897888 | None:intergenic | 45.0% | |
| ! | GAGGAGCATGATTTGTCTTC+AGG | - | chr3_2:7897891-7897910 | None:intergenic | 45.0% |
| CTGACACTGCAACCTTAACA+AGG | + | chr3_2:7897917-7897936 | Msa0393750:CDS | 45.0% | |
| ACAAGGACAAGATCAAGGCT+CGG | + | chr3_2:7897934-7897953 | Msa0393750:CDS | 45.0% | |
| ACGATTCCACGGAAGAAGAT+AGG | + | chr3_2:7898027-7898046 | Msa0393750:CDS | 45.0% | |
| ! | TGCTGCTTATTTAACCTGGC+TGG | + | chr3_2:7898164-7898183 | Msa0393750:CDS | 45.0% |
| GTATGTGTTTCATACCAGCC+AGG | - | chr3_2:7898181-7898200 | None:intergenic | 45.0% | |
| CCACTGAGCTAGTACAAACA+TGG | - | chr3_2:7898715-7898734 | None:intergenic | 45.0% | |
| CCATGTTTGTACTAGCTCAG+TGG | + | chr3_2:7898712-7898731 | Msa0393750:intron | 45.0% | |
| GATTTGAACTCTGTCCCTTG+AGG | - | chr3_2:7898757-7898776 | None:intergenic | 45.0% | |
| CTCCATTATGCTGGTAGTCA+TGG | + | chr3_2:7898907-7898926 | Msa0393750:CDS | 45.0% | |
| ATTCCTGCCGATGATTGATG+AGG | + | chr3_2:7899138-7899157 | Msa0393750:CDS | 45.0% | |
| ATACCTCATCAATCATCGGC+AGG | - | chr3_2:7899144-7899163 | None:intergenic | 45.0% | |
| ! | TGACTGGCTCATGTTTATGC+AGG | + | chr3_2:7899358-7899377 | Msa0393750:intron | 45.0% |
| TTATCGCAATGTAGACGAGG+AGG | + | chr3_2:7899460-7899479 | Msa0393750:CDS | 45.0% | |
| TGTACAGAGTTGGGATTTGG+TGG | + | chr3_2:7899757-7899776 | Msa0393750:intron | 45.0% | |
| ACGATTAACTCATGGTCGGA+AGG | + | chr3_2:7899820-7899839 | Msa0393750:CDS | 45.0% | |
| ACCAGTGATTGACTGGGATA+AGG | + | chr3_2:7900017-7900036 | Msa0393750:CDS | 45.0% | |
| CCAGTGATTGACTGGGATAA+GGG | + | chr3_2:7900018-7900037 | Msa0393750:CDS | 45.0% | |
| ACCTCGCTCAAAACCTGTTA+CGG | - | chr3_2:7900337-7900356 | None:intergenic | 45.0% | |
| ! | AACCGCGTTGCTTTCTTTAG+GGG | - | chr3_2:7900392-7900411 | None:intergenic | 45.0% |
| CTCTCTTTGTGATCCTTCAG+AGG | + | chr3_2:7900414-7900433 | Msa0393750:CDS | 45.0% | |
| CTTGTGGTATATGCAGGTCA+TGG | + | chr3_2:7900597-7900616 | Msa0393750:intron | 45.0% | |
| TAGGGACATAATAACCCCCT+TGG | - | chr3_2:7900902-7900921 | None:intergenic | 45.0% | |
| !! | CAAATAAATAAATAAATAAT+TGG | - | chr3_2:7896578-7896597 | None:intergenic | 5.0% |
| !! | CAATTATTTATTTATTTATT+TGG | + | chr3_2:7896576-7896595 | Msa0393750:intron | 5.0% |
| !! | TAATCAAAATTATATAAAAT+AGG | - | chr3_2:7901095-7901114 | None:intergenic | 5.0% |
| CTCCGTAGATCTGGATCCAA+TGG | + | chr3_2:7897864-7897883 | Msa0393750:intron | 50.0% | |
| GTCCATCGCTAACGATTCCA+CGG | + | chr3_2:7898016-7898035 | Msa0393750:CDS | 50.0% | |
| TTCCGTGGAATCGTTAGCGA+TGG | - | chr3_2:7898021-7898040 | None:intergenic | 50.0% | |
| GCAGCATCAGCTTCAGAAGA+TGG | - | chr3_2:7898150-7898169 | None:intergenic | 50.0% | |
| TCAAAGGCCCCAATTGCTGA+TGG | - | chr3_2:7898296-7898315 | None:intergenic | 50.0% | |
| ! | TCGGACATGAAAGCATGCTC+AGG | - | chr3_2:7898401-7898420 | None:intergenic | 50.0% |
| ! | ACAGTGCTATTCGCCTTTGC+AGG | - | chr3_2:7898439-7898458 | None:intergenic | 50.0% |
| ! | GCGTGCTGCTGTTAAAAGTG+TGG | + | chr3_2:7898537-7898556 | Msa0393750:CDS | 50.0% |
| TAGCGGAAGAAGCCGTGAAA+AGG | + | chr3_2:7898585-7898604 | Msa0393750:CDS | 50.0% | |
| AGCTCGACCTTGTAACCTCA+AGG | + | chr3_2:7898739-7898758 | Msa0393750:intron | 50.0% | |
| GCTCGACCTTGTAACCTCAA+GGG | + | chr3_2:7898740-7898759 | Msa0393750:intron | 50.0% | |
| CTCTGTCCCTTGAGGTTACA+AGG | - | chr3_2:7898749-7898768 | None:intergenic | 50.0% | |
| GACAGAGTTCAAATCCCCTC+TGG | + | chr3_2:7898762-7898781 | Msa0393750:intron | 50.0% | |
| AGGTTCGACCAGTGATTGAC+TGG | + | chr3_2:7900010-7900029 | Msa0393750:CDS | 50.0% | |
| GGTTCGACCAGTGATTGACT+GGG | + | chr3_2:7900011-7900030 | Msa0393750:CDS | 50.0% | |
| CCCTTATCCCAGTCAATCAC+TGG | - | chr3_2:7900021-7900040 | None:intergenic | 50.0% | |
| !!! | ACCGTAACAGGTTTTGAGCG+AGG | + | chr3_2:7900333-7900352 | Msa0393750:intron | 50.0% |
| GTTGCAGTGTCAGCAATGCG+AGG | - | chr3_2:7897910-7897929 | None:intergenic | 55.0% | |
| ! | GGAGAGCATGACAGACTCGA+AGG | - | chr3_2:7897970-7897989 | None:intergenic | 55.0% |
| GCAGGAATTCAGCAGCAGGT+TGG | - | chr3_2:7899126-7899145 | None:intergenic | 55.0% | |
| ATCGGCAGGAATTCAGCAGC+AGG | - | chr3_2:7899130-7899149 | None:intergenic | 55.0% | |
| ! | CGCGTTGCTTTCTTTAGGGG+CGG | - | chr3_2:7900389-7900408 | None:intergenic | 55.0% |
| CGCCCCTAAAGAAAGCAACG+CGG | + | chr3_2:7900387-7900406 | Msa0393750:CDS | 55.0% | |
| ACAAGATCAAGGCTCGGCGC+AGG | + | chr3_2:7897940-7897959 | Msa0393750:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 7895831 | 7901128 | 7895831 | ID=Msa0393750;Name=Msa0393750 |
| chr3_2 | mRNA | 7895831 | 7901128 | 7895831 | ID=Msa0393750-mRNA-1;Parent=Msa0393750;Name=Msa0393750-mRNA-1;_AED=0.15;_eAED=0.15;_QI=265|1|1|1|0.83|0.76|13|462|388 |
| chr3_2 | exon | 7895831 | 7896012 | 7895831 | ID=Msa0393750-mRNA-1:exon:2058;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7896195 | 7896266 | 7896195 | ID=Msa0393750-mRNA-1:exon:2059;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7897872 | 7898185 | 7897872 | ID=Msa0393750-mRNA-1:exon:2060;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7898284 | 7898424 | 7898284 | ID=Msa0393750-mRNA-1:exon:2061;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7898535 | 7898606 | 7898535 | ID=Msa0393750-mRNA-1:exon:2062;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7898880 | 7899005 | 7898880 | ID=Msa0393750-mRNA-1:exon:2063;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7899103 | 7899159 | 7899103 | ID=Msa0393750-mRNA-1:exon:2064;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7899380 | 7899481 | 7899380 | ID=Msa0393750-mRNA-1:exon:2065;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7899764 | 7899841 | 7899764 | ID=Msa0393750-mRNA-1:exon:2066;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7900003 | 7900072 | 7900003 | ID=Msa0393750-mRNA-1:exon:2067;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7900171 | 7900241 | 7900171 | ID=Msa0393750-mRNA-1:exon:2068;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7900343 | 7900435 | 7900343 | ID=Msa0393750-mRNA-1:exon:2069;Parent=Msa0393750-mRNA-1 |
| chr3_2 | exon | 7900613 | 7901128 | 7900613 | ID=Msa0393750-mRNA-1:exon:2070;Parent=Msa0393750-mRNA-1 |
| chr3_2 | five_prime_UTR | 7895831 | 7896012 | 7895831 | ID=Msa0393750-mRNA-1:five_prime_utr;Parent=Msa0393750-mRNA-1 |
| chr3_2 | five_prime_UTR | 7896195 | 7896266 | 7896195 | ID=Msa0393750-mRNA-1:five_prime_utr;Parent=Msa0393750-mRNA-1 |
| chr3_2 | five_prime_UTR | 7897872 | 7897882 | 7897872 | ID=Msa0393750-mRNA-1:five_prime_utr;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7897883 | 7898185 | 7897883 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7898284 | 7898424 | 7898284 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7898535 | 7898606 | 7898535 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7898880 | 7899005 | 7898880 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7899103 | 7899159 | 7899103 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7899380 | 7899481 | 7899380 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7899764 | 7899841 | 7899764 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7900003 | 7900072 | 7900003 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7900171 | 7900241 | 7900171 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7900343 | 7900435 | 7900343 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | CDS | 7900613 | 7900666 | 7900613 | ID=Msa0393750-mRNA-1:cds;Parent=Msa0393750-mRNA-1 |
| chr3_2 | three_prime_UTR | 7900667 | 7901128 | 7900667 | ID=Msa0393750-mRNA-1:three_prime_utr;Parent=Msa0393750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
