AlfalfaGEDB | Msa0977100

M. sativa cultivar zhongmu-4 / Msa0977100

KEGG: K00318
GO: GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004657 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006560 GO:0006562 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009987 GO:0010035 GO:0010133 GO:0016054 GO:0016491 GO:0016645 GO:0019752 GO:0036094 GO:0042221 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0071704 GO:0071949 GO:0097159 GO:0098542 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901700
PFAM: PF01619.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0977100	KEH25240.1	97.561	492	9	1	1	492	1	489	0.0	1000

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0977100	sp\|P92983\|PROD1_ARATH	58.233	498	201	5	1	491	1	498	0.0	569

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0977100	A0A072UHG7	97.561	492	9	1	1	492	1	489	0.0	1000

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0177320	Msa0977100	0.814868	1.237019e-51	-8.615850e-47
Msa0351780	Msa0977100	0.839214	1.811153e-57	-8.615850e-47
Msa0393750	Msa0977100	0.836695	8.047836e-57	-8.615850e-47
Msa0441600	Msa0977100	0.860308	2.261494e-63	-8.615850e-47
Msa0481310	Msa0977100	0.825398	4.790321e-54	-8.615850e-47
Msa0489120	Msa0977100	0.850641	1.489069e-60	-8.615850e-47
Msa0608700	Msa0977100	0.807401	5.147461e-50	-8.615850e-47
Msa0613300	Msa0977100	0.810797	9.642793e-51	-8.615850e-47
Msa0685060	Msa0977100	0.819448	1.155437e-52	-8.615850e-47
Msa0875340	Msa0977100	0.943763	6.679871e-103	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0977100	MtrunA17_Chr6g0456401	97.561	492	9	1	1	492	1	489	999
Msa0977100	MtrunA17_Chr6g0456391	97.358	492	10	1	1	492	1	489	998
Msa0977100	MtrunA17_Chr6g0456381	96.951	492	12	1	1	492	1	489	994
Msa0977100	MtrunA17_Chr7g0221391	72.672	494	130	3	1	492	1	491	753

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0977100	AT3G30775.1	58.233	498	201	5	1	491	1	498	569
Msa0977100	AT3G30775.2	58.233	498	201	5	1	491	1	498	569
Msa0977100	AT5G38710.1	58.442	462	179	4	31	489	24	475	563
Msa0977100	AT5G38710.2	56.315	483	191	7	1	480	1	466	551

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Find 94 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATATGAAATTGGAA+TGG	0.545661	6_4:-11668232	Msa0977100:CDS
AAAGCATATGAAATTGGAAT+GGG	0.486854	6_4:-11668231	Msa0977100:CDS
AACTTATTTGAAAGATGCTA+AGG	0.486569	6_4:-11669014	Msa0977100:CDS
AAGGGAGGCGACGGCAGCGG+TGG	0.516875	6_4:+11671789	None:intergenic
AAGGTTGTTCTCTTTCGAGA+AGG	0.560901	6_4:+11671770	None:intergenic
AAGTGATTTGCTAACATCAA+CGG	0.622647	6_4:+11671360	None:intergenic
AATCACTGCAATATGTCCAA+TGG	0.585286	6_4:-11669374	Msa0977100:CDS
AATCTTGAAAGATGCAGTTA+TGG	0.507538	6_4:-11671557	Msa0977100:CDS
AATTAGAAACTTACAGAAGA+TGG	0.452786	6_4:+11671334	None:intergenic
AATTCCTATGGGATTTAAGT+TGG	0.453707	6_4:-11668951	Msa0977100:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTGAAAGATGCAGTTA+TGG	-	chr6_4:11668122-11668141	Msa0977100:CDS	30.0%
GTTGTGATCGTAATCTTAAA+GGG	-	chr6_4:11668286-11668305	Msa0977100:intron	30.0%
GCACATGTTAAAACAAGTAT+AGG	-	chr6_4:11669023-11669042	Msa0977100:CDS	30.0%
TGGCATTCTGTCTTAAAAAT+TGG	-	chr6_4:11669679-11669698	Msa0977100:intron	30.0%
AGTAAAGCTCATGTTAGAAA+TGG	+	chr6_4:11669773-11669792	None:intergenic	30.0%
GTTGGCATTGTAACAAAAAT+TGG	-	chr6_4:11669875-11669894	Msa0977100:intron	30.0%
TCCATGGTAAATTGAATGAA+GGG	+	chr6_4:11670377-11670396	None:intergenic	30.0%
TTCCATGGTAAATTGAATGA+AGG	+	chr6_4:11670378-11670397	None:intergenic	30.0%
TGAAAATCACTTTCTTCTTG+TGG	+	chr6_4:11670474-11670493	None:intergenic	30.0%
GACAAAGTTGTTGTAATCTT+TGG	+	chr6_4:11670506-11670525	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	11667659	11672042	11667659	ID=Msa0977100;Name=Msa0977100
chr6_4	mRNA	11667659	11672042	11667659	ID=Msa0977100-mRNA-1;Parent=Msa0977100;Name=Msa0977100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=143\|1\|1\|1\|1\|1\|4\|222\|492
chr6_4	exon	11667659	11667920	11667659	ID=Msa0977100-mRNA-1:exon:4120;Parent=Msa0977100-mRNA-1
chr6_4	exon	11668030	11668270	11668030	ID=Msa0977100-mRNA-1:exon:4119;Parent=Msa0977100-mRNA-1
chr6_4	exon	11668771	11669416	11668771	ID=Msa0977100-mRNA-1:exon:4118;Parent=Msa0977100-mRNA-1
chr6_4	exon	11671348	11672042	11671348	ID=Msa0977100-mRNA-1:exon:4117;Parent=Msa0977100-mRNA-1
chr6_4	five_prime_UTR	11671900	11672042	11671900	ID=Msa0977100-mRNA-1:five_prime_utr;Parent=Msa0977100-mRNA-1
chr6_4	CDS	11671348	11671899	11671348	ID=Msa0977100-mRNA-1:cds;Parent=Msa0977100-mRNA-1
chr6_4	CDS	11668771	11669416	11668771	ID=Msa0977100-mRNA-1:cds;Parent=Msa0977100-mRNA-1
chr6_4	CDS	11668030	11668270	11668030	ID=Msa0977100-mRNA-1:cds;Parent=Msa0977100-mRNA-1
chr6_4	CDS	11667881	11667920	11667881	ID=Msa0977100-mRNA-1:cds;Parent=Msa0977100-mRNA-1
chr6_4	three_prime_UTR	11667659	11667880	11667659	ID=Msa0977100-mRNA-1:three_prime_utr;Parent=Msa0977100-mRNA-1

Gene Sequence

>Msa0977100

ATGGCAACTCGTGTGGTCCCACAAAAGATCATCAAGAATCTCCGTTTCAAAACCACCACAAAGCCATTAAACTCCTCCCATCCTTCAGCCACCGCTGCCGTCGCCTCCCTTCTCGAAAGAGAACAACCTTCTCCACCACCACCACCACAACCGTCACACCAACAACCGTCTTATCTCGACCTAAACGACGCTGAGAGACTATTCTCAGCTGTTCCAACGTCCACGTTGATAAGATCCTCAGCCGTTCTGCATGCAACGGCTATAGGACCTGTCGTGGACGTTGGAATATGGGCTATGCAATCAAAATTGTTACAAACGGGAATCTTGAAAGATGCAGTTATGGCAGTTACAAAGAGAACATTTTATGAACATTTTTGTGCTGGAGAAGATGCTATTGCTGCTGGAAAGAGTATAAGGTCTGTTAATGAAGCTGGCTTACGTGGCATGCTTGTTTATGGTGTTGAAGATGCACATGATAATGATGGTTGTGATCGTAATCTTAAAGGGTTTCTTCATACCGTTGATGTTAGCAAATCACTTCCTCCATCTTCTGTGAGTTTTGTGATTGTGAAAATCACTGCAATATGTCCAATGGCATTACTAGAAAGAATAAGTGATCTTCTAAGATGGCAACAAAAAGACCCTTCATTCAATTTACCATGGAAACAAGACTCTCTACCAATTTTCTCAGAATCAAGTCCATTATACCACACTACAAAAAAACCAGAACCATTAACACCACAAGAAGAAAGTGATTTTCAACTAGCAAACCAAAGATTACAACAACTTTGTCAAAAATGTGTTGAAGCAAACATGCCACTATTGGTTGATGCTGAACACACTACTGTTCAACCAGCTATTGATTACTTCACATACTCTTCAGCAATTATGCATAATAAAGATGATAATCCTATTGTGTTTGGAACAATTCAAACTTATTTGAAAGATGCTAAGGAGAGATTGTTTCTTGCAACACAAGCTGCTGAAAAAATTGGAATTCCTATGGGATTTAAGTTGGTTAGAGGTGCTTATATGTCTACAGAAAGTACATTGGCTGAGTCTTTTGGATCTAGGTCACCAATTCATGATACTATTGAAGATACACATAATTGCTTCAATGATTGTTCATCTTATTTGCTTGAGAAGTTTGCTAATGGAAAAGGATCTGTTGTTCTTGCTACACACAACATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAAATTGGAATGGGAAAAGTGAACCACAAACTTGAATTTGCACAACTATGTGGAATGTCAGATGCACTTTCATTTGGTTTGAGCAATGCAGGGTTTAGAGTTAGCAAGTATATGCCATTTGGACCAGTTGAGATGGTTATGCCTTACCTATTGAGAAGAGCTGAAGAAAATAGAGGCCTTTTGGCTGCTTCTGGATTTGATAGACAACTCATAAGAAAAGAGCTTGGAAGGAGGCTTAAAGCTGCAATATTTTAA

Protein sequence

>Msa0977100

MATRVVPQKIIKNLRFKTTTKPLNSSHPSATAAVASLLEREQPSPPPPPQPSHQQPSYLDLNDAERLFSAVPTSTLIRSSAVLHATAIGPVVDVGIWAMQSKLLQTGILKDAVMAVTKRTFYEHFCAGEDAIAAGKSIRSVNEAGLRGMLVYGVEDAHDNDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMALLERISDLLRWQQKDPSFNLPWKQDSLPIFSESSPLYHTTKKPEPLTPQEESDFQLANQRLQQLCQKCVEANMPLLVDAEHTTVQPAIDYFTYSSAIMHNKDDNPIVFGTIQTYLKDAKERLFLATQAAEKIGIPMGFKLVRGAYMSTESTLAESFGSRSPIHDTIEDTHNCFNDCSSYLLEKFANGKGSVVLATHNIESGKLAAAKAYEIGMGKVNHKLEFAQLCGMSDALSFGLSNAGFRVSKYMPFGPVEMVMPYLLRRAEENRGLLAASGFDRQLIRKELGRRLKAAIF*