Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063370 | XP_013449158.1 | 95.964 | 446 | 16 | 1 | 1 | 444 | 1 | 446 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063370 | sp|P48621|FAD3C_SOYBN | 78.728 | 456 | 82 | 4 | 1 | 444 | 1 | 453 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063370 | A0A072UBF9 | 95.964 | 446 | 16 | 1 | 1 | 444 | 1 | 446 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa1063370 | 0.811897 | 5.562688e-51 | -8.615850e-47 |
| Msa0030480 | Msa1063370 | 0.811860 | 5.668322e-51 | -8.615850e-47 |
| Msa0051050 | Msa1063370 | 0.803537 | 3.325187e-49 | -8.615850e-47 |
| Msa0071480 | Msa1063370 | 0.824564 | 7.537940e-54 | -8.615850e-47 |
| Msa0081940 | Msa1063370 | 0.806404 | 8.363910e-50 | -8.615850e-47 |
| Msa0082050 | Msa1063370 | 0.808592 | 2.871270e-50 | -8.615850e-47 |
| Msa0101240 | Msa1063370 | 0.827151 | 1.832451e-54 | -8.615850e-47 |
| Msa0119440 | Msa1063370 | 0.838214 | 3.284196e-57 | -8.615850e-47 |
| Msa0614380 | Msa1063370 | 0.815315 | 9.843660e-52 | -8.615850e-47 |
| Msa0758250 | Msa1063370 | 0.840583 | 7.966670e-58 | -8.615850e-47 |
| Msa0769720 | Msa1063370 | 0.808147 | 3.571831e-50 | -8.615850e-47 |
| Msa0799620 | Msa1063370 | 0.820228 | 7.663655e-53 | -8.615850e-47 |
| Msa0819980 | Msa1063370 | 0.808712 | 2.706657e-50 | -8.615850e-47 |
| Msa0128430 | Msa1063370 | 0.818296 | 2.111352e-52 | -8.615850e-47 |
| Msa0136630 | Msa1063370 | 0.811897 | 5.564228e-51 | -8.615850e-47 |
| Msa0151220 | Msa1063370 | 0.832378 | 9.784224e-56 | -8.615850e-47 |
| Msa0162690 | Msa1063370 | 0.823798 | 1.140943e-53 | -8.615850e-47 |
| Msa0179100 | Msa1063370 | 0.841563 | 4.404489e-58 | -8.615850e-47 |
| Msa0187310 | Msa1063370 | 0.814753 | 1.311853e-51 | -8.615850e-47 |
| Msa0224130 | Msa1063370 | 0.802084 | 6.634489e-49 | -8.615850e-47 |
| Msa0225840 | Msa1063370 | 0.811987 | 5.316983e-51 | -8.615850e-47 |
| Msa0364790 | Msa1063370 | 0.805196 | 1.500180e-49 | -8.615850e-47 |
| Msa0380600 | Msa1063370 | 0.831338 | 1.766419e-55 | -8.615850e-47 |
| Msa0393750 | Msa1063370 | 0.801003 | 1.105282e-48 | -8.615850e-47 |
| Msa0403490 | Msa1063370 | 0.808317 | 3.287376e-50 | -8.615850e-47 |
| Msa0408340 | Msa1063370 | 0.844470 | 7.412362e-59 | -8.615850e-47 |
| Msa0430240 | Msa1063370 | 0.833936 | 4.003458e-56 | -8.615850e-47 |
| Msa0437070 | Msa1063370 | 0.805743 | 1.151946e-49 | -8.615850e-47 |
| Msa0472770 | Msa1063370 | 0.807077 | 6.029218e-50 | -8.615850e-47 |
| Msa1024690 | Msa1063370 | 0.905992 | 2.386669e-80 | -8.615850e-47 |
| Msa1034700 | Msa1063370 | 0.809046 | 2.295633e-50 | -8.615850e-47 |
| Msa1043120 | Msa1063370 | 0.848220 | 7.043247e-60 | -8.615850e-47 |
| Msa1063370 | Msa1063410 | 0.959725 | 9.264857e-118 | -8.615850e-47 |
| Msa1063370 | Msa1074540 | 0.816348 | 5.793957e-52 | -8.615850e-47 |
| Msa1063370 | Msa1077060 | 0.802798 | 4.729039e-49 | -8.615850e-47 |
| Msa1063370 | Msa1108720 | 0.972744 | 2.875221e-135 | -8.615850e-47 |
| Msa1063370 | Msa1122790 | 0.809417 | 1.912274e-50 | -8.615850e-47 |
| Msa1063370 | Msa1123720 | 0.800770 | 1.233441e-48 | -8.615850e-47 |
| Msa1063370 | Msa1152410 | 0.942141 | 1.215432e-101 | -8.615850e-47 |
| Msa1063370 | Msa1156820 | 0.821570 | 3.764147e-53 | -8.615850e-47 |
| Msa1063370 | Msa1209190 | 0.805428 | 1.341333e-49 | -8.615850e-47 |
| Msa1063370 | Msa1214170 | 0.806758 | 7.041049e-50 | -8.615850e-47 |
| Msa1063370 | Msa1220000 | 0.803967 | 2.707196e-49 | -8.615850e-47 |
| Msa1063370 | Msa1285200 | 0.814116 | 1.814588e-51 | -8.615850e-47 |
| Msa1063370 | Msa1350700 | 0.802566 | 5.279528e-49 | -8.615850e-47 |
| Msa1063370 | Msa1360020 | 0.804282 | 2.328136e-49 | -8.615850e-47 |
| Msa1063370 | Msa1360420 | 0.832526 | 8.990595e-56 | -8.615850e-47 |
| Msa1063370 | Msa1366550 | 0.808250 | 3.395817e-50 | -8.615850e-47 |
| Msa1063370 | Msa1399260 | 0.807028 | 6.175188e-50 | -8.615850e-47 |
| Msa1063370 | Msa1420930 | 0.820344 | 7.206638e-53 | -8.615850e-47 |
| Msa1063370 | Msa1421900 | 0.800121 | 1.672313e-48 | -8.615850e-47 |
| Msa1063370 | Msa1463030 | 0.806495 | 7.999698e-50 | -8.615850e-47 |
| Msa0259440 | Msa1063370 | 0.834289 | 3.266052e-56 | -8.615850e-47 |
| Msa0259580 | Msa1063370 | 0.827869 | 1.232364e-54 | -8.615850e-47 |
| Msa0260530 | Msa1063370 | 0.829193 | 5.904018e-55 | -8.615850e-47 |
| Msa0305620 | Msa1063370 | 0.842365 | 2.703582e-58 | -8.615850e-47 |
| Msa0500400 | Msa1063370 | 0.803332 | 3.667107e-49 | -8.615850e-47 |
| Msa0583670 | Msa1063370 | 0.803601 | 3.224349e-49 | -8.615850e-47 |
| Msa0860250 | Msa1063370 | 0.848796 | 4.877105e-60 | -8.615850e-47 |
| Msa0865970 | Msa1063370 | 0.832490 | 9.176694e-56 | -8.615850e-47 |
| Msa0866070 | Msa1063370 | 0.828817 | 7.279039e-55 | -8.615850e-47 |
| Msa0968050 | Msa1063370 | 0.830702 | 2.531154e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063370 | MtrunA17_Chr7g0242601 | 95.964 | 446 | 16 | 1 | 1 | 444 | 1 | 446 | 0.0 | 889 |
| Msa1063370 | MtrunA17_Chr4g0006241 | 75.000 | 448 | 100 | 3 | 1 | 444 | 1 | 440 | 0.0 | 668 |
| Msa1063370 | MtrunA17_Chr5g0430241 | 71.225 | 351 | 101 | 0 | 87 | 437 | 35 | 385 | 0.0 | 555 |
| Msa1063370 | MtrunA17_Chr3g0105171 | 68.717 | 374 | 111 | 2 | 73 | 444 | 16 | 385 | 0.0 | 530 |
| Msa1063370 | MtrunA17_Chr7g0258651 | 37.313 | 335 | 189 | 7 | 80 | 396 | 15 | 346 | 1.67e-63 | 209 |
| Msa1063370 | MtrunA17_Chr1g0175301 | 35.714 | 336 | 197 | 6 | 76 | 395 | 13 | 345 | 2.40e-63 | 209 |
| Msa1063370 | MtrunA17_Chr1g0210511 | 37.607 | 234 | 135 | 4 | 172 | 396 | 10 | 241 | 7.28e-41 | 147 |
| Msa1063370 | MtrunA17_Chr4g0074071 | 28.443 | 334 | 223 | 8 | 69 | 397 | 75 | 397 | 2.54e-32 | 127 |
| Msa1063370 | MtrunA17_Chr2g0305881 | 37.288 | 118 | 65 | 3 | 91 | 203 | 95 | 208 | 5.26e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063370 | AT5G05580.1 | 69.977 | 443 | 120 | 3 | 1 | 440 | 1 | 433 | 0.0 | 655 |
| Msa1063370 | AT3G11170.1 | 69.955 | 446 | 126 | 3 | 1 | 442 | 1 | 442 | 0.0 | 649 |
| Msa1063370 | AT5G05580.2 | 70.876 | 388 | 100 | 4 | 1 | 385 | 1 | 378 | 0.0 | 573 |
| Msa1063370 | AT2G29980.1 | 65.365 | 384 | 128 | 2 | 63 | 444 | 4 | 384 | 0.0 | 525 |
| Msa1063370 | AT2G29980.2 | 63.636 | 275 | 97 | 1 | 63 | 337 | 4 | 275 | 1.09e-125 | 366 |
| Msa1063370 | AT3G12120.1 | 35.613 | 351 | 202 | 9 | 63 | 396 | 2 | 345 | 2.54e-65 | 214 |
| Msa1063370 | AT3G12120.2 | 35.613 | 351 | 202 | 9 | 63 | 396 | 2 | 345 | 2.54e-65 | 214 |
| Msa1063370 | AT4G30950.1 | 29.226 | 349 | 220 | 11 | 59 | 394 | 61 | 395 | 1.60e-32 | 128 |
Find 120 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTACTCATGCTTTA+TGG | 0.109554 | 7_2:-55234639 | Msa1063370:CDS |
| GGATGGTTTGGCCTCTTTAT+TGG | 0.161417 | 7_2:-55235926 | Msa1063370:CDS |
| CTGCTCAAGGAACTATGTTT+TGG | 0.165280 | 7_2:-55235902 | Msa1063370:CDS |
| ACAAAACCTGTTCTTGGTTT+TGG | 0.203188 | 7_2:+55236293 | None:intergenic |
| TAACAACTTGATCATAATTT+AGG | 0.213167 | 7_2:+55233325 | None:intergenic |
| GATGGTTTGGCCTCTTTATT+GGG | 0.236131 | 7_2:-55235925 | Msa1063370:CDS |
| ATGATCAAGTTGTTATATAT+TGG | 0.244537 | 7_2:-55233317 | Msa1063370:three_prime_UTR |
| TTCTTAATAATTGGATGGTT+TGG | 0.246549 | 7_2:-55235938 | Msa1063370:CDS |
| ACTACTATTGACCGCGATTA+TGG | 0.247284 | 7_2:-55233891 | Msa1063370:CDS |
| GTTTGGTCCAAGTGAGAAAA+AGG | 0.260081 | 7_2:-55234736 | Msa1063370:CDS |
| GAATCAGAAACAAAATATTT+TGG | 0.260418 | 7_2:+55236406 | None:intergenic |
| TTTCAACATGGCCATGATTC+TGG | 0.264541 | 7_2:+55235304 | None:intergenic |
| ACCAGTCTTCCCAGGACTTC+TGG | 0.274716 | 7_2:+55234785 | None:intergenic |
| GGAAGAGGAGCTGATTTCTT+TGG | 0.277203 | 7_2:+55233642 | None:intergenic |
| ATCTTATTGGAGAATTTATA+AGG | 0.282216 | 7_2:-55233614 | Msa1063370:CDS |
| CTTATATCAGCCAATGTAAA+TGG | 0.296570 | 7_2:+55236065 | None:intergenic |
| GACACAACAAAACCTGTTCT+TGG | 0.307873 | 7_2:+55236287 | None:intergenic |
| AAATTTAGCCTTTGAATTGT+TGG | 0.315210 | 7_2:+55236265 | None:intergenic |
| AATCATGACCAAGAACAAAA+AGG | 0.317453 | 7_2:+55235877 | None:intergenic |
| CATCCCAGCAGTGACTTGTT+TGG | 0.326413 | 7_2:-55234753 | Msa1063370:CDS |
| TCAATTCTTGTTCCCTATCA+TGG | 0.336107 | 7_2:-55235457 | Msa1063370:CDS |
| TCTTAAATTTCATTCTGATT+TGG | 0.337793 | 7_2:+55233512 | None:intergenic |
| ATATACAAAATTCACTTGTT+AGG | 0.345272 | 7_2:+55233383 | None:intergenic |
| CAAGTTGCCATGGAAGATTA+AGG | 0.367176 | 7_2:+55236359 | None:intergenic |
| CTTAATCTTCCATGGCAACT+TGG | 0.368742 | 7_2:-55236358 | Msa1063370:exon |
| CCTAATCTTAACAGTGTTGT+TGG | 0.371102 | 7_2:-55235496 | Msa1063370:CDS |
| AGTCACTGCTGGGATGGAAA+TGG | 0.376732 | 7_2:+55234760 | None:intergenic |
| GCTATGGTGGCATTGCTTGT+AGG | 0.377173 | 7_2:-55234684 | Msa1063370:CDS |
| CCAACAACACTGTTAAGATT+AGG | 0.378693 | 7_2:+55235496 | None:intergenic |
| TAAAGCATGAGTAATGGAAT+TGG | 0.386548 | 7_2:+55234642 | None:intergenic |
| AATGAAGAAAAGGGTGCGTT+TGG | 0.387722 | 7_2:+55236571 | None:intergenic |
| TCTTTCACCCAACAATGCTT+TGG | 0.388930 | 7_2:+55236032 | None:intergenic |
| TGATAACTTCTACTGCTTGT+TGG | 0.390054 | 7_2:-55234710 | Msa1063370:CDS |
| CACTAATTTCAGAATCTGTT+TGG | 0.396613 | 7_2:+55233541 | None:intergenic |
| CAGCAATTCCAAAGCATTGT+TGG | 0.398283 | 7_2:-55236040 | Msa1063370:CDS |
| CATAACATACCATCCATGAT+AGG | 0.399195 | 7_2:+55235444 | None:intergenic |
| TGAATGTGAGTACTCCTTTG+AGG | 0.406114 | 7_2:-55236157 | Msa1063370:CDS |
| ATGAAGTGGGCCAGAAGTCC+TGG | 0.407514 | 7_2:-55234795 | Msa1063370:intron |
| TTTAAGAGAGAATGAAGAAA+AGG | 0.413758 | 7_2:+55236561 | None:intergenic |
| GTGGCATTGCTTGTAGGATT+GGG | 0.423209 | 7_2:-55234678 | Msa1063370:CDS |
| CCCAACTCACAGAATTCAAA+AGG | 0.425477 | 7_2:-55236520 | Msa1063370:five_prime_UTR |
| CAAACAGATTCTGAAATTAG+TGG | 0.428433 | 7_2:-55233540 | Msa1063370:CDS |
| GTAGGATTGGGATTTACAAT+TGG | 0.429127 | 7_2:-55234666 | Msa1063370:CDS |
| ATTGTTGGGTGAAAGATTCA+TGG | 0.438978 | 7_2:-55236025 | Msa1063370:CDS |
| GAATGTGAGTACTCCTTTGA+GGG | 0.443614 | 7_2:-55236156 | Msa1063370:CDS |
| TAGGAATGGAGCTATCTTAG+AGG | 0.444853 | 7_2:-55233921 | Msa1063370:CDS |
| TACTGCTTGTTGGACTGCTA+TGG | 0.447734 | 7_2:-55234700 | Msa1063370:CDS |
| GTTTGGAATTTGATGAGTTA+TGG | 0.448091 | 7_2:+55236588 | None:intergenic |
| GAGGCAGCAAGACCTGTGTT+TGG | 0.458232 | 7_2:-55233681 | Msa1063370:CDS |
| AACTTTATGAGAAGTTCAAA+AGG | 0.459432 | 7_2:+55233484 | None:intergenic |
| AGGTGATAGTGTGGAATTTG+AGG | 0.461549 | 7_2:+55233813 | None:intergenic |
| GTCACTGCTGGGATGGAAAT+GGG | 0.462406 | 7_2:+55234761 | None:intergenic |
| GGTGGCATTGCTTGTAGGAT+TGG | 0.463654 | 7_2:-55234679 | Msa1063370:CDS |
| GTTGGGTTGAAGAAAGTTGA+TGG | 0.464173 | 7_2:+55236537 | None:intergenic |
| GCCAGAAGTCCTGGGAAGAC+TGG | 0.465518 | 7_2:-55234786 | Msa1063370:CDS |
| AATTGAACAAGAACATGAAC+AGG | 0.467947 | 7_2:-55236126 | Msa1063370:CDS |
| AGCAATTCCAAAGCATTGTT+GGG | 0.468648 | 7_2:-55236039 | Msa1063370:CDS |
| ACAAGAACATGAACAGGAAC+AGG | 0.468800 | 7_2:-55236120 | Msa1063370:CDS |
| TATACAGGAGAATTAGTCAT+AGG | 0.472631 | 7_2:-55235335 | Msa1063370:intron |
| ACTTCATAAAAGAAAGTGAT+TGG | 0.474238 | 7_2:-55233444 | Msa1063370:three_prime_UTR |
| GTATTTCCAAAACCAAGAAC+AGG | 0.474801 | 7_2:-55236299 | Msa1063370:CDS |
| CCTCTTTATTGGGCTGCTCA+AGG | 0.476332 | 7_2:-55235915 | Msa1063370:CDS |
| TGGACCAAACAAGTCACTGC+TGG | 0.478611 | 7_2:+55234749 | None:intergenic |
| GTGACTTACTTGCACCATCA+TGG | 0.478921 | 7_2:-55234481 | Msa1063370:CDS |
| TGGCTTAAGTTGAAGCACTT+TGG | 0.482723 | 7_2:-55233297 | Msa1063370:three_prime_UTR |
| AATTCTCCAATAAGATGAAA+AGG | 0.487330 | 7_2:+55233621 | None:intergenic |
| AATAACATTCACCATGACAT+TGG | 0.490823 | 7_2:-55233861 | Msa1063370:CDS |
| CTGTGACCCTTAATCTTCCA+TGG | 0.490908 | 7_2:-55236366 | Msa1063370:exon |
| AAGTTGCCATGGAAGATTAA+GGG | 0.493344 | 7_2:+55236360 | None:intergenic |
| ACAAAATTCACTTGTTAGGA+AGG | 0.494424 | 7_2:+55233387 | None:intergenic |
| TTAATCTTCCATGGCAACTT+GGG | 0.497357 | 7_2:-55236357 | Msa1063370:exon |
| GAGATGAAACTTACAACATA+CGG | 0.502661 | 7_2:+55234612 | None:intergenic |
| CTATTGACCGCGATTATGGA+TGG | 0.507864 | 7_2:-55233887 | Msa1063370:CDS |
| GAGTTACCAGAGTTTGATCC+TGG | 0.511019 | 7_2:-55236098 | Msa1063370:CDS |
| GGTGATAGTGTGGAATTTGA+GGG | 0.516178 | 7_2:+55233814 | None:intergenic |
| GGATATGCAAGCAATGGAAA+AGG | 0.519991 | 7_2:+55234921 | None:intergenic |
| GTGGAAATTAAAGAATGTGT+AGG | 0.524609 | 7_2:-55233422 | Msa1063370:three_prime_UTR |
| AGGACTCATCACCAGAATCA+TGG | 0.529486 | 7_2:-55235315 | Msa1063370:CDS |
| TGTTGTGTCCAACAATTCAA+AGG | 0.531174 | 7_2:-55236273 | Msa1063370:CDS |
| AAATGACGAGTCTTGGCATC+CGG | 0.531545 | 7_2:-55235283 | Msa1063370:intron |
| GATCATTATGTTAGTGACAC+TGG | 0.532354 | 7_2:-55233579 | Msa1063370:CDS |
| TTCACCACCACCATTTACAT+TGG | 0.537892 | 7_2:-55236075 | Msa1063370:CDS |
| CCAATAAGATGAAAAGGAAG+AGG | 0.538126 | 7_2:+55233627 | None:intergenic |
| CCTTGAGCAGCCCAATAAAG+AGG | 0.538687 | 7_2:+55235915 | None:intergenic |
| TTCTTGTTCCCTATCATGGA+TGG | 0.540256 | 7_2:-55235453 | Msa1063370:intron |
| TGATAAAACCCAAGTTGCCA+TGG | 0.540293 | 7_2:+55236349 | None:intergenic |
| GACAAATTACCTTGGTATCG+TGG | 0.541472 | 7_2:-55234451 | Msa1063370:CDS |
| ATGTTGAAAATGACGAGTCT+TGG | 0.543891 | 7_2:-55235290 | Msa1063370:CDS |
| TGGAAATTAAAGAATGTGTA+GGG | 0.554345 | 7_2:-55233421 | Msa1063370:three_prime_UTR |
| AAATGGGAACCAGTCTTCCC+AGG | 0.559704 | 7_2:+55234777 | None:intergenic |
| TCAATTGAATCAACCCTCAA+AGG | 0.560368 | 7_2:+55236143 | None:intergenic |
| ACTCCATAAAGCATGAGTAA+TGG | 0.560961 | 7_2:+55234636 | None:intergenic |
| CAAACAAGTCACTGCTGGGA+TGG | 0.566530 | 7_2:+55234754 | None:intergenic |
| GGACCAAACAAGTCACTGCT+GGG | 0.570996 | 7_2:+55234750 | None:intergenic |
| TTAAGAGAGAATGAAGAAAA+GGG | 0.571085 | 7_2:+55236562 | None:intergenic |
| GTAAATGGTGGTGGTGAACC+AGG | 0.571749 | 7_2:+55236080 | None:intergenic |
| TTTAAGGAGAAGAGAAAATG+GGG | 0.572531 | 7_2:-55236182 | Msa1063370:CDS |
| TTGTAATATTCTCCAAACAC+AGG | 0.573097 | 7_2:+55233669 | None:intergenic |
| TGCTTGTTGGACTGCTATGG+TGG | 0.574412 | 7_2:-55234697 | Msa1063370:CDS |
| TTTGGAAATACTGGAGCAAG+TGG | 0.574925 | 7_2:+55236311 | None:intergenic |
| TACACAGGATATGCAAGCAA+TGG | 0.581321 | 7_2:+55234915 | None:intergenic |
| TCATAAAAGAAAGTGATTGG+TGG | 0.583458 | 7_2:-55233441 | Msa1063370:three_prime_UTR |
| TGAAGTGGGCCAGAAGTCCT+GGG | 0.586957 | 7_2:-55234794 | Msa1063370:intron |
| ACTTTATGAGAAGTTCAAAA+GGG | 0.589496 | 7_2:+55233485 | None:intergenic |
| AGATACTCACAGCTTCAACT+AGG | 0.590574 | 7_2:+55233793 | None:intergenic |
| AGTGTGGAATTTGAGGGAAA+AGG | 0.599823 | 7_2:+55233820 | None:intergenic |
| ATAACATACCATCCATGATA+GGG | 0.602383 | 7_2:+55235445 | None:intergenic |
| GAATGGAGCTATCTTAGAGG+TGG | 0.607399 | 7_2:-55233918 | Msa1063370:CDS |
| CCAACTCACAGAATTCAAAA+GGG | 0.608267 | 7_2:-55236519 | Msa1063370:five_prime_UTR |
| ATTACCTTGGTATCGTGGAA+AGG | 0.611215 | 7_2:-55234446 | Msa1063370:intron |
| GTCATGAAGACAAATTACCT+TGG | 0.612404 | 7_2:-55234459 | Msa1063370:CDS |
| GGTGAACCAGGATCAAACTC+TGG | 0.614380 | 7_2:+55236092 | None:intergenic |
| GCTTCAACTAGGTGATAGTG+TGG | 0.622119 | 7_2:+55233804 | None:intergenic |
| TCAGCCAATGTAAATGGTGG+TGG | 0.634606 | 7_2:+55236071 | None:intergenic |
| TGACATGAGTTCCAATGTCA+TGG | 0.641062 | 7_2:+55233850 | None:intergenic |
| ATTTGTCTTCATGACCATGA+TGG | 0.654713 | 7_2:+55234467 | None:intergenic |
| AAATAACTAACAAGGTACAC+AGG | 0.662267 | 7_2:+55234900 | None:intergenic |
| AGTACCTTTCCACGATACCA+AGG | 0.662444 | 7_2:+55234442 | None:intergenic |
| ATATCAGCCAATGTAAATGG+TGG | 0.666664 | 7_2:+55236068 | None:intergenic |
| TATTAATCCATCCATAATCG+CGG | 0.702360 | 7_2:+55233880 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTATATTTTTCATGA+AGG | - | chr7_2:55236470-55236489 | Msa1063370:five_prime_UTR | 10.0% |
| !! | TAGTATAAAATATTGTCAAA+CGG | + | chr7_2:55234110-55234129 | None:intergenic | 15.0% |
| !!! | TACTTTTAATTTTTTTGCTA+TGG | - | chr7_2:55234206-55234225 | Msa1063370:intron | 15.0% |
| !! | AATATTCTTAAATGAGAAAA+TGG | + | chr7_2:55234770-55234789 | None:intergenic | 15.0% |
| !! | ATTTGAATATTAATTAGTTC+TGG | - | chr7_2:55234975-55234994 | Msa1063370:CDS | 15.0% |
| !! | CTAAATATGTAAACTAAAAT+CGG | + | chr7_2:55235871-55235890 | None:intergenic | 15.0% |
| !!! | TGTATTTTTAAGTAATGTTT+TGG | - | chr7_2:55236586-55236605 | Msa1063370:five_prime_UTR | 15.0% |
| !! | CAAAAATTGGTCATAAAAAT+TGG | + | chr7_2:55233390-55233409 | None:intergenic | 20.0% |
| !!! | GAATCAGAAACAAAATATTT+TGG | + | chr7_2:55233424-55233443 | None:intergenic | 20.0% |
| !!! | AATTCAAAGGCTAAATTTTT+AGG | - | chr7_2:55233567-55233586 | Msa1063370:CDS | 20.0% |
| !!! | ACCAAAAAGTTTTGATTTTA+AGG | - | chr7_2:55233629-55233648 | Msa1063370:CDS | 20.0% |
| !!! | TCCTTAAAATCAAAACTTTT+TGG | + | chr7_2:55233633-55233652 | None:intergenic | 20.0% |
| !!! | TTTGATTTTGATTGTTGTTT+TGG | - | chr7_2:55234274-55234293 | Msa1063370:intron | 20.0% |
| !! | TTGTAAACGCAATTTAAAAA+AGG | - | chr7_2:55234690-55234709 | Msa1063370:CDS | 20.0% |
| !!! | TTTTAATTTTCATTAGACGT+CGG | - | chr7_2:55234720-55234739 | Msa1063370:CDS | 20.0% |
| !!! | ACATGTGTATTAGAATTTTA+AGG | + | chr7_2:55234809-55234828 | None:intergenic | 20.0% |
| !! | AGAAAAAATATTTAAGAGCT+TGG | - | chr7_2:55234851-55234870 | Msa1063370:intron | 20.0% |
| !! | AAATTCTAGTCAAAATTTGT+AGG | + | chr7_2:55234959-55234978 | None:intergenic | 20.0% |
| !! | ATCTTATTGGAGAATTTATA+AGG | - | chr7_2:55236213-55236232 | Msa1063370:CDS | 20.0% |
| !! | TCTTAAATTTCATTCTGATT+TGG | + | chr7_2:55236318-55236337 | None:intergenic | 20.0% |
| !! | ATATACAAAATTCACTTGTT+AGG | + | chr7_2:55236447-55236466 | None:intergenic | 20.0% |
| !! | TAACAACTTGATCATAATTT+AGG | + | chr7_2:55236505-55236524 | None:intergenic | 20.0% |
| !!! | ATGATCAAGTTGTTATATAT+TGG | - | chr7_2:55236510-55236529 | Msa1063370:five_prime_UTR | 20.0% |
| ! | TTAAGAGAGAATGAAGAAAA+GGG | + | chr7_2:55233268-55233287 | None:intergenic | 25.0% |
| ! | TTTAAGAGAGAATGAAGAAA+AGG | + | chr7_2:55233269-55233288 | None:intergenic | 25.0% |
| ! | GGTGTAAATACTTCAAAAAT+TGG | + | chr7_2:55233403-55233422 | None:intergenic | 25.0% |
| !! | AAATTTAGCCTTTGAATTGT+TGG | + | chr7_2:55233565-55233584 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGAGAAGAGAAAA+TGG | - | chr7_2:55233643-55233662 | Msa1063370:CDS | 25.0% |
| !!! | TTTTAAGGAGAAGAGAAAAT+GGG | - | chr7_2:55233644-55233663 | Msa1063370:CDS | 25.0% |
| !!! | AGAGATGTTGTTATTGTTTT+TGG | - | chr7_2:55233846-55233865 | Msa1063370:CDS | 25.0% |
| !!! | TGTTGTTATTGTTTTTGGTT+TGG | - | chr7_2:55233851-55233870 | Msa1063370:CDS | 25.0% |
| !! | TGCTTTTCTTAATAATTGGA+TGG | - | chr7_2:55233884-55233903 | Msa1063370:CDS | 25.0% |
| ! | TTCTTAATAATTGGATGGTT+TGG | - | chr7_2:55233889-55233908 | Msa1063370:CDS | 25.0% |
| ! | TTGTCGATAGTAGAAAATAA+CGG | - | chr7_2:55234036-55234055 | Msa1063370:intron | 25.0% |
| ! | TATGTTTACCTTGATTATAC+AGG | - | chr7_2:55234477-55234496 | Msa1063370:CDS | 25.0% |
| !! | CATGAATTTTCATTAGATGT+CGG | + | chr7_2:55234649-55234668 | None:intergenic | 25.0% |
| !!! | ATATTAATTAGTTCTGGTAG+AGG | - | chr7_2:55234981-55235000 | Msa1063370:CDS | 25.0% |
| !! | TTTTCATTGATCAATTAGCA+TGG | - | chr7_2:55235239-55235258 | Msa1063370:intron | 25.0% |
| !!! | ATTAGCATGGTTTTAGTTTT+TGG | - | chr7_2:55235252-55235271 | Msa1063370:intron | 25.0% |
| !! | ATTTAGAGCAAAGTCAAATT+AGG | + | chr7_2:55235297-55235316 | None:intergenic | 25.0% |
| ! | ATCAGTCAAATATCAGATAT+TGG | - | chr7_2:55235444-55235463 | Msa1063370:intron | 25.0% |
| ! | TATTGGATCAATGTACAATT+GGG | + | chr7_2:55235472-55235491 | None:intergenic | 25.0% |
| ! | TTATTGGATCAATGTACAAT+TGG | + | chr7_2:55235473-55235492 | None:intergenic | 25.0% |
| ! | TTAATCCAACAAACGAAATA+TGG | - | chr7_2:55235800-55235819 | Msa1063370:intron | 25.0% |
| !! | TTAGTCTTTATCTGTTGATT+AGG | - | chr7_2:55235887-55235906 | Msa1063370:CDS | 25.0% |
| ! | CTCTATCTTAGTTAAAACAA+TGG | - | chr7_2:55236061-55236080 | Msa1063370:CDS | 25.0% |
| ! | AATTCTCCAATAAGATGAAA+AGG | + | chr7_2:55236209-55236228 | None:intergenic | 25.0% |
| ! | ACTTTATGAGAAGTTCAAAA+GGG | + | chr7_2:55236345-55236364 | None:intergenic | 25.0% |
| ! | AACTTTATGAGAAGTTCAAA+AGG | + | chr7_2:55236346-55236365 | None:intergenic | 25.0% |
| !! | AATCACTTTCTTTTATGAAG+TGG | + | chr7_2:55236384-55236403 | None:intergenic | 25.0% |
| ! | ACTTCATAAAAGAAAGTGAT+TGG | - | chr7_2:55236383-55236402 | Msa1063370:intron | 25.0% |
| ! | TGGAAATTAAAGAATGTGTA+GGG | - | chr7_2:55236406-55236425 | Msa1063370:intron | 25.0% |
| ! | GTTTGGAATTTGATGAGTTA+TGG | + | chr7_2:55233242-55233261 | None:intergenic | 30.0% |
| TTTAAGGAGAAGAGAAAATG+GGG | - | chr7_2:55233645-55233664 | Msa1063370:CDS | 30.0% | |
| AATTGAACAAGAACATGAAC+AGG | - | chr7_2:55233701-55233720 | Msa1063370:intron | 30.0% | |
| CTTATATCAGCCAATGTAAA+TGG | + | chr7_2:55233765-55233784 | None:intergenic | 30.0% | |
| !!! | CTGCTGCTTTTCTTAATAAT+TGG | - | chr7_2:55233880-55233899 | Msa1063370:CDS | 30.0% |
| ATCATGACCAAGAACAAAAA+GGG | + | chr7_2:55233952-55233971 | None:intergenic | 30.0% | |
| AATCATGACCAAGAACAAAA+AGG | + | chr7_2:55233953-55233972 | None:intergenic | 30.0% | |
| ! | TTTTTGTTCTTGGTCATGAT+TGG | - | chr7_2:55233952-55233971 | Msa1063370:intron | 30.0% |
| !! | TTTTTGCTATGGTTGACTTT+TGG | - | chr7_2:55234217-55234236 | Msa1063370:intron | 30.0% |
| !! | TTTTGCTATGGTTGACTTTT+GGG | - | chr7_2:55234218-55234237 | Msa1063370:intron | 30.0% |
| !!! | TGTTGTTTTGGAATTTTCAG+TGG | - | chr7_2:55234286-55234305 | Msa1063370:intron | 30.0% |
| ATAACATACCATCCATGATA+GGG | + | chr7_2:55234385-55234404 | None:intergenic | 30.0% | |
| CTAATTCTCCTGTATAATCA+AGG | + | chr7_2:55234488-55234507 | None:intergenic | 30.0% | |
| TATACAGGAGAATTAGTCAT+AGG | - | chr7_2:55234492-55234511 | Msa1063370:CDS | 30.0% | |
| AAATAACTAACAAGGTACAC+AGG | + | chr7_2:55234930-55234949 | None:intergenic | 30.0% | |
| GGCACAATAAATAACTAACA+AGG | + | chr7_2:55234938-55234957 | None:intergenic | 30.0% | |
| ! | TTGTTGTTCTTTGAATGAAG+TGG | - | chr7_2:55235018-55235037 | Msa1063370:intron | 30.0% |
| TGTTGTTCTTTGAATGAAGT+GGG | - | chr7_2:55235019-55235038 | Msa1063370:intron | 30.0% | |
| ! | TAAAGCATGAGTAATGGAAT+TGG | + | chr7_2:55235188-55235207 | None:intergenic | 30.0% |
| ATTCCATTACTCATGCTTTA+TGG | - | chr7_2:55235188-55235207 | Msa1063370:intron | 30.0% | |
| GAGATGAAACTTACAACATA+CGG | + | chr7_2:55235218-55235237 | None:intergenic | 30.0% | |
| ! | TTGACTTTGCTCTAAATTGA+AGG | - | chr7_2:55235300-55235319 | Msa1063370:CDS | 30.0% |
| ! | AATTGAAGGTTTTTGTGATG+TGG | - | chr7_2:55235314-55235333 | Msa1063370:CDS | 30.0% |
| !!! | TTTTTGGTTTGTAGATGTGT+CGG | - | chr7_2:55235530-55235549 | Msa1063370:intron | 30.0% |
| ATCAATCAAATTTCGATCGT+TGG | - | chr7_2:55235553-55235572 | Msa1063370:intron | 30.0% | |
| TTAGTCAAAGTTTCAACTGT+TGG | - | chr7_2:55235763-55235782 | Msa1063370:intron | 30.0% | |
| ! | CTTTATCTGTTGATTAGGAA+TGG | - | chr7_2:55235892-55235911 | Msa1063370:CDS | 30.0% |
| TATTAATCCATCCATAATCG+CGG | + | chr7_2:55235950-55235969 | None:intergenic | 30.0% | |
| AATAACATTCACCATGACAT+TGG | - | chr7_2:55235966-55235985 | Msa1063370:CDS | 30.0% | |
| !!! | AGTGATTTGTTTTTAGAGTC+AGG | - | chr7_2:55236090-55236109 | Msa1063370:CDS | 30.0% |
| TTGTAATATTCTCCAAACAC+AGG | + | chr7_2:55236161-55236180 | None:intergenic | 30.0% | |
| CACTAATTTCAGAATCTGTT+TGG | + | chr7_2:55236289-55236308 | None:intergenic | 30.0% | |
| !! | CAAACAGATTCTGAAATTAG+TGG | - | chr7_2:55236287-55236306 | Msa1063370:CDS | 30.0% |
| TCATAAAAGAAAGTGATTGG+TGG | - | chr7_2:55236386-55236405 | Msa1063370:intron | 30.0% | |
| GTGGAAATTAAAGAATGTGT+AGG | - | chr7_2:55236405-55236424 | Msa1063370:intron | 30.0% | |
| ! | ACAAAATTCACTTGTTAGGA+AGG | + | chr7_2:55236443-55236462 | None:intergenic | 30.0% |
| !!! | GAGTTATGGCTTTTAGAACT+TGG | + | chr7_2:55233228-55233247 | None:intergenic | 35.0% |
| ! | CCTTTTGAATTCTGTGAGTT+GGG | + | chr7_2:55233310-55233329 | None:intergenic | 35.0% |
| CCAACTCACAGAATTCAAAA+GGG | - | chr7_2:55233308-55233327 | Msa1063370:three_prime_UTR | 35.0% | |
| AAGTTGCCATGGAAGATTAA+GGG | + | chr7_2:55233470-55233489 | None:intergenic | 35.0% | |
| TTAATCTTCCATGGCAACTT+GGG | - | chr7_2:55233470-55233489 | Msa1063370:three_prime_UTR | 35.0% | |
| !! | ACTTGGGTTTTATCAGAATG+TGG | - | chr7_2:55233486-55233505 | Msa1063370:three_prime_UTR | 35.0% |
| !!! | GTTCTTGGTTTTGGAAATAC+TGG | + | chr7_2:55233528-55233547 | None:intergenic | 35.0% |
| GTATTTCCAAAACCAAGAAC+AGG | - | chr7_2:55233528-55233547 | Msa1063370:CDS | 35.0% | |
| ! | ACAAAACCTGTTCTTGGTTT+TGG | + | chr7_2:55233537-55233556 | None:intergenic | 35.0% |
| TGTTGTGTCCAACAATTCAA+AGG | - | chr7_2:55233554-55233573 | Msa1063370:CDS | 35.0% | |
| TCAATTGAATCAACCCTCAA+AGG | + | chr7_2:55233687-55233706 | None:intergenic | 35.0% | |
| ATATCAGCCAATGTAAATGG+TGG | + | chr7_2:55233762-55233781 | None:intergenic | 35.0% | |
| !! | AGCAATTCCAAAGCATTGTT+GGG | - | chr7_2:55233788-55233807 | Msa1063370:intron | 35.0% |
| ATTGTTGGGTGAAAGATTCA+TGG | - | chr7_2:55233802-55233821 | Msa1063370:intron | 35.0% | |
| ! | TGCTCAAGGAACTATGTTTT+GGG | - | chr7_2:55233926-55233945 | Msa1063370:intron | 35.0% |
| ! | TTGTTCAAATTTTGCTACGC+AGG | - | chr7_2:55234060-55234079 | Msa1063370:intron | 35.0% |
| !!! | GACTTTTGGGTTGTAGAATT+TGG | - | chr7_2:55234231-55234250 | Msa1063370:intron | 35.0% |
| !! | TTTGGAATTTTCAGTGGTCA+TGG | - | chr7_2:55234292-55234311 | Msa1063370:intron | 35.0% |
| CCAACAACACTGTTAAGATT+AGG | + | chr7_2:55234334-55234353 | None:intergenic | 35.0% | |
| CCTAATCTTAACAGTGTTGT+TGG | - | chr7_2:55234331-55234350 | Msa1063370:intron | 35.0% | |
| TCAATTCTTGTTCCCTATCA+TGG | - | chr7_2:55234370-55234389 | Msa1063370:intron | 35.0% | |
| CATAACATACCATCCATGAT+AGG | + | chr7_2:55234386-55234405 | None:intergenic | 35.0% | |
| !! | AAGACTCGTCATTTTCAACA+TGG | + | chr7_2:55234538-55234557 | None:intergenic | 35.0% |
| ATGTTGAAAATGACGAGTCT+TGG | - | chr7_2:55234537-55234556 | Msa1063370:intron | 35.0% | |
| AGAGAATGTTATCTTCTGAC+CGG | + | chr7_2:55234566-55234585 | None:intergenic | 35.0% | |
| GTTTACAAAGTACGCTTACA+TGG | + | chr7_2:55234678-55234697 | None:intergenic | 35.0% | |
| ! | ATCACATCCTTTTTCTCACT+TGG | + | chr7_2:55235101-55235120 | None:intergenic | 35.0% |
| TGATAACTTCTACTGCTTGT+TGG | - | chr7_2:55235117-55235136 | Msa1063370:intron | 35.0% | |
| GTAGGATTGGGATTTACAAT+TGG | - | chr7_2:55235161-55235180 | Msa1063370:intron | 35.0% | |
| ACTCCATAAAGCATGAGTAA+TGG | + | chr7_2:55235194-55235213 | None:intergenic | 35.0% | |
| ! | TTTTGTGATGTGGTTGGATT+TGG | - | chr7_2:55235324-55235343 | Msa1063370:CDS | 35.0% |
| ATTTGTCTTCATGACCATGA+TGG | + | chr7_2:55235363-55235382 | None:intergenic | 35.0% | |
| GTCATGAAGACAAATTACCT+TGG | - | chr7_2:55235368-55235387 | Msa1063370:intron | 35.0% | |
| TTGATCCAATAAGCGAGATA+TGG | - | chr7_2:55235481-55235500 | Msa1063370:CDS | 35.0% | |
| GTTGGATTACAATTGTACCT+TGG | - | chr7_2:55235571-55235590 | Msa1063370:intron | 35.0% | |
| TACAGTCATATTTGGCCTAT+TGG | + | chr7_2:55235598-55235617 | None:intergenic | 35.0% | |
| CTAGTCTGTACAGTCATATT+TGG | + | chr7_2:55235606-55235625 | None:intergenic | 35.0% | |
| !!! | TAGACCACCAATGTGTTTTT+TGG | - | chr7_2:55235623-55235642 | Msa1063370:intron | 35.0% |
| CAAACCAAAAAACACATTGG+TGG | + | chr7_2:55235630-55235649 | None:intergenic | 35.0% | |
| GGACAAACCAAAAAACACAT+TGG | + | chr7_2:55235633-55235652 | None:intergenic | 35.0% | |
| ACAGTCAAGATTTGACTGAA+TGG | + | chr7_2:55235654-55235673 | None:intergenic | 35.0% | |
| CAAATCTTGACTGTTTGATG+AGG | - | chr7_2:55235660-55235679 | Msa1063370:intron | 35.0% | |
| CAGTGCAGTAAAGTCATATT+TGG | + | chr7_2:55235686-55235705 | None:intergenic | 35.0% | |
| CCAATAAGATGAAAAGGAAG+AGG | + | chr7_2:55236203-55236222 | None:intergenic | 35.0% | |
| ! | CCTCTTCCTTTTCATCTTAT+TGG | - | chr7_2:55236200-55236219 | Msa1063370:CDS | 35.0% |
| GATCATTATGTTAGTGACAC+TGG | - | chr7_2:55236248-55236267 | Msa1063370:CDS | 35.0% | |
| ! | AATGAAGAAAAGGGTGCGTT+TGG | + | chr7_2:55233259-55233278 | None:intergenic | 40.0% |
| !! | GTTGGGTTGAAGAAAGTTGA+TGG | + | chr7_2:55233293-55233312 | None:intergenic | 40.0% |
| CCCAACTCACAGAATTCAAA+AGG | - | chr7_2:55233307-55233326 | Msa1063370:three_prime_UTR | 40.0% | |
| ! | CCCTTTTGAATTCTGTGAGT+TGG | + | chr7_2:55233311-55233330 | None:intergenic | 40.0% |
| CAAGTTGCCATGGAAGATTA+AGG | + | chr7_2:55233471-55233490 | None:intergenic | 40.0% | |
| CTTAATCTTCCATGGCAACT+TGG | - | chr7_2:55233469-55233488 | Msa1063370:three_prime_UTR | 40.0% | |
| TGATAAAACCCAAGTTGCCA+TGG | + | chr7_2:55233481-55233500 | None:intergenic | 40.0% | |
| TTTGGAAATACTGGAGCAAG+TGG | + | chr7_2:55233519-55233538 | None:intergenic | 40.0% | |
| GACACAACAAAACCTGTTCT+TGG | + | chr7_2:55233543-55233562 | None:intergenic | 40.0% | |
| TGAATGTGAGTACTCCTTTG+AGG | - | chr7_2:55233670-55233689 | Msa1063370:CDS | 40.0% | |
| GAATGTGAGTACTCCTTTGA+GGG | - | chr7_2:55233671-55233690 | Msa1063370:CDS | 40.0% | |
| ACAAGAACATGAACAGGAAC+AGG | - | chr7_2:55233707-55233726 | Msa1063370:intron | 40.0% | |
| TTCACCACCACCATTTACAT+TGG | - | chr7_2:55233752-55233771 | Msa1063370:intron | 40.0% | |
| !! | CAGCAATTCCAAAGCATTGT+TGG | - | chr7_2:55233787-55233806 | Msa1063370:intron | 40.0% |
| TCTTTCACCCAACAATGCTT+TGG | + | chr7_2:55233798-55233817 | None:intergenic | 40.0% | |
| ! | GATGGTTTGGCCTCTTTATT+GGG | - | chr7_2:55233902-55233921 | Msa1063370:CDS | 40.0% |
| ! | CTGCTCAAGGAACTATGTTT+TGG | - | chr7_2:55233925-55233944 | Msa1063370:intron | 40.0% |
| ! | TTTTGGGCCCTTTTTGTTCT+TGG | - | chr7_2:55233942-55233961 | Msa1063370:intron | 40.0% |
| TTCTTGTTCCCTATCATGGA+TGG | - | chr7_2:55234374-55234393 | Msa1063370:intron | 40.0% | |
| TTTCAACATGGCCATGATTC+TGG | + | chr7_2:55234526-55234545 | None:intergenic | 40.0% | |
| ATGAGAAAATGGCACATGCA+CGG | + | chr7_2:55234759-55234778 | None:intergenic | 40.0% | |
| GGATATGCAAGCAATGGAAA+AGG | + | chr7_2:55234909-55234928 | None:intergenic | 40.0% | |
| TACACAGGATATGCAAGCAA+TGG | + | chr7_2:55234915-55234934 | None:intergenic | 40.0% | |
| GTTTGGTCCAAGTGAGAAAA+AGG | - | chr7_2:55235091-55235110 | Msa1063370:intron | 40.0% | |
| ! | GAAGGTTTTTGTGATGTGGT+TGG | - | chr7_2:55235318-55235337 | Msa1063370:CDS | 40.0% |
| GACAAATTACCTTGGTATCG+TGG | - | chr7_2:55235376-55235395 | Msa1063370:intron | 40.0% | |
| ATTACCTTGGTATCGTGGAA+AGG | - | chr7_2:55235381-55235400 | Msa1063370:intron | 40.0% | |
| TGTAGCCATATCTCGCTTAT+TGG | + | chr7_2:55235489-55235508 | None:intergenic | 40.0% | |
| CGAGATATGGCTACATTGAT+CGG | - | chr7_2:55235494-55235513 | Msa1063370:CDS | 40.0% | |
| CAATTGTACCTTGGTCCAAT+AGG | - | chr7_2:55235580-55235599 | Msa1063370:intron | 40.0% | |
| ATATTTGGCCTATTGGACCA+AGG | + | chr7_2:55235591-55235610 | None:intergenic | 40.0% | |
| ATGACTTTACTGCACTGAGA+CGG | - | chr7_2:55235689-55235708 | Msa1063370:intron | 40.0% | |
| TAGGAATGGAGCTATCTTAG+AGG | - | chr7_2:55235906-55235925 | Msa1063370:CDS | 40.0% | |
| ACTACTATTGACCGCGATTA+TGG | - | chr7_2:55235936-55235955 | Msa1063370:CDS | 40.0% | |
| TGACATGAGTTCCAATGTCA+TGG | + | chr7_2:55235980-55235999 | None:intergenic | 40.0% | |
| AGTGTGGAATTTGAGGGAAA+AGG | + | chr7_2:55236010-55236029 | None:intergenic | 40.0% | |
| ! | GGTGATAGTGTGGAATTTGA+GGG | + | chr7_2:55236016-55236035 | None:intergenic | 40.0% |
| ! | AGGTGATAGTGTGGAATTTG+AGG | + | chr7_2:55236017-55236036 | None:intergenic | 40.0% |
| AGATACTCACAGCTTCAACT+AGG | + | chr7_2:55236037-55236056 | None:intergenic | 40.0% | |
| !! | TTTGCTTTGTTTGCAGACTG+AGG | - | chr7_2:55236127-55236146 | Msa1063370:CDS | 40.0% |
| !! | TGGCTTAAGTTGAAGCACTT+TGG | - | chr7_2:55236530-55236549 | Msa1063370:five_prime_UTR | 40.0% |
| CTGTGACCCTTAATCTTCCA+TGG | - | chr7_2:55233461-55233480 | Msa1063370:three_prime_UTR | 45.0% | |
| GAGTTACCAGAGTTTGATCC+TGG | - | chr7_2:55233729-55233748 | Msa1063370:intron | 45.0% | |
| TCAGCCAATGTAAATGGTGG+TGG | + | chr7_2:55233759-55233778 | None:intergenic | 45.0% | |
| ! | GGATGGTTTGGCCTCTTTAT+TGG | - | chr7_2:55233901-55233920 | Msa1063370:CDS | 45.0% |
| AGGACTCATCACCAGAATCA+TGG | - | chr7_2:55234512-55234531 | Msa1063370:intron | 45.0% | |
| AAATGACGAGTCTTGGCATC+CGG | - | chr7_2:55234544-55234563 | Msa1063370:intron | 45.0% | |
| ! | TACTGCTTGTTGGACTGCTA+TGG | - | chr7_2:55235127-55235146 | Msa1063370:intron | 45.0% |
| GTGGCATTGCTTGTAGGATT+GGG | - | chr7_2:55235149-55235168 | Msa1063370:intron | 45.0% | |
| GTGACTTACTTGCACCATCA+TGG | - | chr7_2:55235346-55235365 | Msa1063370:intron | 45.0% | |
| AGTACCTTTCCACGATACCA+AGG | + | chr7_2:55235388-55235407 | None:intergenic | 45.0% | |
| TGACTGATGTACTGCTACAG+AGG | + | chr7_2:55235432-55235451 | None:intergenic | 45.0% | |
| !!! | CGGATGACTGCTAGTCTTTT+TGG | - | chr7_2:55235514-55235533 | Msa1063370:CDS | 45.0% |
| TGACTTTACTGCACTGAGAC+GGG | - | chr7_2:55235690-55235709 | Msa1063370:intron | 45.0% | |
| TGCGGCCATATTTCGTTTGT+TGG | + | chr7_2:55235808-55235827 | None:intergenic | 45.0% | |
| CAAACGAAATATGGCCGCAT+TGG | - | chr7_2:55235809-55235828 | Msa1063370:intron | 45.0% | |
| GAATGGAGCTATCTTAGAGG+TGG | - | chr7_2:55235909-55235928 | Msa1063370:CDS | 45.0% | |
| CTATTGACCGCGATTATGGA+TGG | - | chr7_2:55235940-55235959 | Msa1063370:CDS | 45.0% | |
| ! | GCTTCAACTAGGTGATAGTG+TGG | + | chr7_2:55236026-55236045 | None:intergenic | 45.0% |
| ! | GGAAGAGGAGCTGATTTCTT+TGG | + | chr7_2:55236188-55236207 | None:intergenic | 45.0% |
| GGTGAACCAGGATCAAACTC+TGG | + | chr7_2:55233738-55233757 | None:intergenic | 50.0% | |
| !! | GTAAATGGTGGTGGTGAACC+AGG | + | chr7_2:55233750-55233769 | None:intergenic | 50.0% |
| CCTTGAGCAGCCCAATAAAG+AGG | + | chr7_2:55233915-55233934 | None:intergenic | 50.0% | |
| CCTCTTTATTGGGCTGCTCA+AGG | - | chr7_2:55233912-55233931 | Msa1063370:CDS | 50.0% | |
| AAATGGGAACCAGTCTTCCC+AGG | + | chr7_2:55235053-55235072 | None:intergenic | 50.0% | |
| GTCACTGCTGGGATGGAAAT+GGG | + | chr7_2:55235069-55235088 | None:intergenic | 50.0% | |
| AGTCACTGCTGGGATGGAAA+TGG | + | chr7_2:55235070-55235089 | None:intergenic | 50.0% | |
| CAAACAAGTCACTGCTGGGA+TGG | + | chr7_2:55235076-55235095 | None:intergenic | 50.0% | |
| !! | CATCCCAGCAGTGACTTGTT+TGG | - | chr7_2:55235074-55235093 | Msa1063370:intron | 50.0% |
| GGACCAAACAAGTCACTGCT+GGG | + | chr7_2:55235080-55235099 | None:intergenic | 50.0% | |
| TGGACCAAACAAGTCACTGC+TGG | + | chr7_2:55235081-55235100 | None:intergenic | 50.0% | |
| ! | TGCTTGTTGGACTGCTATGG+TGG | - | chr7_2:55235130-55235149 | Msa1063370:intron | 50.0% |
| GCTATGGTGGCATTGCTTGT+AGG | - | chr7_2:55235143-55235162 | Msa1063370:intron | 50.0% | |
| GGTGGCATTGCTTGTAGGAT+TGG | - | chr7_2:55235148-55235167 | Msa1063370:intron | 50.0% | |
| ATGAAGTGGGCCAGAAGTCC+TGG | - | chr7_2:55235032-55235051 | Msa1063370:intron | 55.0% | |
| TGAAGTGGGCCAGAAGTCCT+GGG | - | chr7_2:55235033-55235052 | Msa1063370:intron | 55.0% | |
| ACCAGTCTTCCCAGGACTTC+TGG | + | chr7_2:55235045-55235064 | None:intergenic | 55.0% | |
| ! | CGAAATATGGCCGCATTGGC+TGG | - | chr7_2:55235813-55235832 | Msa1063370:intron | 55.0% |
| !! | ATATGGCCGCATTGGCTGGT+CGG | - | chr7_2:55235817-55235836 | Msa1063370:intron | 55.0% |
| GAGGCAGCAAGACCTGTGTT+TGG | - | chr7_2:55236146-55236165 | Msa1063370:CDS | 55.0% | |
| GCCAGAAGTCCTGGGAAGAC+TGG | - | chr7_2:55235041-55235060 | Msa1063370:intron | 60.0% | |
| ! | CTGAGACGGGCATCGCTAAC+TGG | - | chr7_2:55235703-55235722 | Msa1063370:intron | 60.0% |
| TTGCAGCCGACCAGCCAATG+CGG | + | chr7_2:55235826-55235845 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 55233221 | 55236628 | 55233221 | ID=Msa1063370;Name=Msa1063370 |
| chr7_2 | mRNA | 55233221 | 55236628 | 55233221 | ID=Msa1063370-mRNA-1;Parent=Msa1063370;Name=Msa1063370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=233|1|1|1|0.87|0.77|9|300|444 |
| chr7_2 | exon | 55233221 | 55233706 | 55233221 | ID=Msa1063370-mRNA-1:exon:10269;Parent=Msa1063370-mRNA-1 |
| chr7_2 | exon | 55233803 | 55233940 | 55233803 | ID=Msa1063370-mRNA-1:exon:10268;Parent=Msa1063370-mRNA-1 |
| chr7_2 | exon | 55234447 | 55234527 | 55234447 | ID=Msa1063370-mRNA-1:exon:10267;Parent=Msa1063370-mRNA-1 |
| chr7_2 | exon | 55234626 | 55234811 | 55234626 | ID=Msa1063370-mRNA-1:exon:10266;Parent=Msa1063370-mRNA-1 |
| chr7_2 | exon | 55234911 | 55235003 | 55234911 | ID=Msa1063370-mRNA-1:exon:10265;Parent=Msa1063370-mRNA-1 |
| chr7_2 | exon | 55235284 | 55235350 | 55235284 | ID=Msa1063370-mRNA-1:exon:10264;Parent=Msa1063370-mRNA-1 |
| chr7_2 | exon | 55235454 | 55235543 | 55235454 | ID=Msa1063370-mRNA-1:exon:10263;Parent=Msa1063370-mRNA-1 |
| chr7_2 | exon | 55235876 | 55236392 | 55235876 | ID=Msa1063370-mRNA-1:exon:10262;Parent=Msa1063370-mRNA-1 |
| chr7_2 | exon | 55236419 | 55236628 | 55236419 | ID=Msa1063370-mRNA-1:exon:10261;Parent=Msa1063370-mRNA-1 |
| chr7_2 | five_prime_UTR | 55236419 | 55236628 | 55236419 | ID=Msa1063370-mRNA-1:five_prime_utr;Parent=Msa1063370-mRNA-1 |
| chr7_2 | five_prime_UTR | 55236370 | 55236392 | 55236370 | ID=Msa1063370-mRNA-1:five_prime_utr;Parent=Msa1063370-mRNA-1 |
| chr7_2 | CDS | 55235876 | 55236369 | 55235876 | ID=Msa1063370-mRNA-1:cds;Parent=Msa1063370-mRNA-1 |
| chr7_2 | CDS | 55235454 | 55235543 | 55235454 | ID=Msa1063370-mRNA-1:cds;Parent=Msa1063370-mRNA-1 |
| chr7_2 | CDS | 55235284 | 55235350 | 55235284 | ID=Msa1063370-mRNA-1:cds;Parent=Msa1063370-mRNA-1 |
| chr7_2 | CDS | 55234911 | 55235003 | 55234911 | ID=Msa1063370-mRNA-1:cds;Parent=Msa1063370-mRNA-1 |
| chr7_2 | CDS | 55234626 | 55234811 | 55234626 | ID=Msa1063370-mRNA-1:cds;Parent=Msa1063370-mRNA-1 |
| chr7_2 | CDS | 55234447 | 55234527 | 55234447 | ID=Msa1063370-mRNA-1:cds;Parent=Msa1063370-mRNA-1 |
| chr7_2 | CDS | 55233803 | 55233940 | 55233803 | ID=Msa1063370-mRNA-1:cds;Parent=Msa1063370-mRNA-1 |
| chr7_2 | CDS | 55233521 | 55233706 | 55233521 | ID=Msa1063370-mRNA-1:cds;Parent=Msa1063370-mRNA-1 |
| chr7_2 | three_prime_UTR | 55233221 | 55233520 | 55233221 | ID=Msa1063370-mRNA-1:three_prime_utr;Parent=Msa1063370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
