Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441600 | XP_003598212.1 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441600 | sp|Q9SUW0|TPPG_ARATH | 62.304 | 382 | 129 | 2 | 1 | 382 | 1 | 367 | 7.56e-166 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441600 | G7IYG6 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101380 | Msa0441600 | 0.800820 | 1.204593e-48 | -8.615850e-47 |
| Msa0177320 | Msa0441600 | 0.814732 | 1.325980e-51 | -8.615850e-47 |
| Msa0393750 | Msa0441600 | 0.867909 | 9.662752e-66 | -8.615850e-47 |
| Msa0441600 | Msa0481310 | 0.818216 | 2.200281e-52 | -8.615850e-47 |
| Msa0441600 | Msa0489120 | 0.962810 | 2.529174e-121 | -8.615850e-47 |
| Msa0441600 | Msa0529670 | 0.808092 | 3.670154e-50 | -8.615850e-47 |
| Msa0441600 | Msa0544730 | 0.805817 | 1.111288e-49 | -8.615850e-47 |
| Msa0441600 | Msa0572750 | 0.802957 | 4.384181e-49 | -8.615850e-47 |
| Msa0441600 | Msa0585840 | 0.815999 | 6.931102e-52 | -8.615850e-47 |
| Msa0441600 | Msa0587530 | 0.814140 | 1.792368e-51 | -8.615850e-47 |
| Msa0441600 | Msa0608270 | 0.821400 | 4.119018e-53 | -8.615850e-47 |
| Msa0441600 | Msa0625780 | 0.803394 | 3.560409e-49 | -8.615850e-47 |
| Msa0441600 | Msa0627770 | 0.817571 | 3.078043e-52 | -8.615850e-47 |
| Msa0441600 | Msa0648830 | 0.819677 | 1.024152e-52 | -8.615850e-47 |
| Msa0441600 | Msa0685060 | 0.811392 | 7.163493e-51 | -8.615850e-47 |
| Msa0441600 | Msa0875340 | 0.844389 | 7.792166e-59 | -8.615850e-47 |
| Msa0441600 | Msa0907710 | 0.849414 | 3.284278e-60 | -8.615850e-47 |
| Msa0441600 | Msa0940560 | 0.864646 | 1.047119e-64 | -8.615850e-47 |
| Msa0441600 | Msa0968360 | 0.801289 | 9.658086e-49 | -8.615850e-47 |
| Msa0441600 | Msa0977100 | 0.860308 | 2.261494e-63 | -8.615850e-47 |
| Msa0441600 | Msa1030030 | 0.807529 | 4.834686e-50 | -8.615850e-47 |
| Msa0441600 | Msa1078660 | 0.804453 | 2.144412e-49 | -8.615850e-47 |
| Msa0441600 | Msa1169220 | 0.808388 | 3.173981e-50 | -8.615850e-47 |
| Msa0441600 | Msa1169380 | 0.803304 | 3.715781e-49 | -8.615850e-47 |
| Msa0441600 | Msa1180300 | 0.813870 | 2.056201e-51 | -8.615850e-47 |
| Msa0441600 | Msa1207330 | 0.814987 | 1.164473e-51 | -8.615850e-47 |
| Msa0441600 | Msa1259730 | 0.806164 | 9.396694e-50 | -8.615850e-47 |
| Msa0441600 | Msa1312770 | 0.809402 | 1.926205e-50 | -8.615850e-47 |
| Msa0441600 | Msa1329900 | 0.817335 | 3.477681e-52 | -8.615850e-47 |
| Msa0441600 | Msa1337440 | 0.822203 | 2.685429e-53 | -8.615850e-47 |
| Msa0441600 | Msa1350700 | 0.873688 | 1.211478e-67 | -8.615850e-47 |
| Msa0441600 | Msa1360260 | 0.883946 | 2.916700e-71 | -8.615850e-47 |
| Msa0441600 | Msa1439410 | 0.867441 | 1.365195e-65 | -8.615850e-47 |
| Msa0441600 | Msa1453050 | 0.809562 | 1.779683e-50 | -8.615850e-47 |
| Msa0249360 | Msa0441600 | 0.820527 | 6.545593e-53 | -8.615850e-47 |
| Msa0266220 | Msa0441600 | 0.871368 | 7.210956e-67 | -8.615850e-47 |
| Msa0287680 | Msa0441600 | 0.862674 | 4.286412e-64 | -8.615850e-47 |
| Msa0287850 | Msa0441600 | 0.811378 | 7.213162e-51 | -8.615850e-47 |
| Msa0351780 | Msa0441600 | 0.926788 | 2.893704e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441600 | MtrunA17_Chr3g0079281 | 97.680 | 388 | 9 | 0 | 1 | 388 | 1 | 388 | 0.0 | 782 |
| Msa0441600 | MtrunA17_Chr4g0018441 | 73.969 | 388 | 91 | 4 | 1 | 385 | 1 | 381 | 0.0 | 575 |
| Msa0441600 | MtrunA17_Chr4g0056481 | 61.140 | 386 | 142 | 5 | 1 | 383 | 1 | 381 | 6.03e-163 | 462 |
| Msa0441600 | MtrunA17_Chr8g0382441 | 53.039 | 362 | 151 | 4 | 25 | 386 | 17 | 359 | 6.52e-131 | 380 |
| Msa0441600 | MtrunA17_Chr3g0115661 | 55.422 | 332 | 126 | 4 | 58 | 388 | 53 | 363 | 8.47e-127 | 369 |
| Msa0441600 | MtrunA17_Chr5g0425711 | 53.846 | 325 | 130 | 3 | 62 | 386 | 69 | 373 | 7.48e-119 | 350 |
| Msa0441600 | MtrunA17_Chr3g0126491 | 54.452 | 292 | 126 | 4 | 95 | 382 | 64 | 352 | 3.17e-110 | 327 |
| Msa0441600 | MtrunA17_Chr8g0347141 | 51.361 | 294 | 142 | 1 | 95 | 387 | 20 | 313 | 1.37e-106 | 316 |
| Msa0441600 | MtrunA17_Chr4g0018781 | 60.000 | 105 | 40 | 2 | 70 | 173 | 1 | 104 | 2.62e-33 | 120 |
| Msa0441600 | MtrunA17_Chr4g0018791 | 68.852 | 61 | 18 | 1 | 268 | 327 | 3 | 63 | 2.48e-21 | 87.0 |
| Msa0441600 | MtrunA17_Chr4g0041381 | 28.169 | 284 | 159 | 12 | 114 | 379 | 588 | 844 | 5.72e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441600 | AT4G22590.1 | 62.304 | 382 | 129 | 2 | 1 | 382 | 1 | 367 | 7.69e-167 | 472 |
| Msa0441600 | AT5G51460.2 | 60.204 | 392 | 139 | 6 | 1 | 385 | 1 | 382 | 4.75e-166 | 470 |
| Msa0441600 | AT5G51460.4 | 60.204 | 392 | 139 | 6 | 1 | 385 | 1 | 382 | 4.75e-166 | 470 |
| Msa0441600 | AT5G51460.1 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 3.49e-164 | 465 |
| Msa0441600 | AT5G51460.5 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 3.49e-164 | 465 |
| Msa0441600 | AT5G51460.3 | 60.051 | 393 | 139 | 7 | 1 | 385 | 1 | 383 | 3.49e-164 | 465 |
| Msa0441600 | AT4G12430.1 | 62.304 | 382 | 120 | 4 | 1 | 382 | 1 | 358 | 1.63e-157 | 448 |
| Msa0441600 | AT1G35910.1 | 55.747 | 348 | 136 | 4 | 45 | 387 | 32 | 366 | 2.93e-130 | 379 |
| Msa0441600 | AT4G39770.1 | 57.632 | 321 | 115 | 2 | 64 | 384 | 45 | 344 | 3.62e-125 | 365 |
| Msa0441600 | AT5G10100.3 | 53.704 | 324 | 132 | 3 | 62 | 384 | 58 | 364 | 1.64e-121 | 356 |
| Msa0441600 | AT5G10100.1 | 53.704 | 324 | 132 | 3 | 62 | 384 | 69 | 375 | 1.98e-121 | 357 |
| Msa0441600 | AT1G78090.1 | 50.272 | 368 | 153 | 7 | 31 | 387 | 23 | 371 | 2.21e-120 | 353 |
| Msa0441600 | AT5G65140.1 | 53.870 | 323 | 132 | 2 | 62 | 384 | 62 | 367 | 4.76e-119 | 350 |
| Msa0441600 | AT4G39770.2 | 57.282 | 309 | 111 | 2 | 64 | 372 | 45 | 332 | 1.58e-118 | 347 |
| Msa0441600 | AT2G22190.1 | 55.000 | 320 | 120 | 2 | 66 | 385 | 55 | 350 | 8.07e-118 | 347 |
| Msa0441600 | AT1G22210.1 | 54.206 | 321 | 131 | 2 | 67 | 387 | 14 | 318 | 7.30e-117 | 343 |
| Msa0441600 | AT1G78090.2 | 50.425 | 353 | 145 | 7 | 31 | 372 | 23 | 356 | 2.40e-115 | 340 |
| Msa0441600 | AT5G10100.2 | 53.376 | 311 | 127 | 3 | 62 | 371 | 58 | 351 | 6.59e-115 | 339 |
| Msa0441600 | AT2G22190.2 | 54.545 | 308 | 116 | 2 | 66 | 373 | 55 | 338 | 3.70e-112 | 332 |
| Msa0441600 | AT5G10100.4 | 50.309 | 324 | 123 | 4 | 62 | 384 | 69 | 355 | 8.26e-107 | 318 |
| Msa0441600 | AT5G65140.3 | 53.571 | 280 | 113 | 2 | 62 | 341 | 62 | 324 | 4.46e-102 | 305 |
| Msa0441600 | AT5G65140.2 | 52.344 | 256 | 105 | 2 | 62 | 317 | 62 | 300 | 3.95e-89 | 272 |
| Msa0441600 | AT1G70290.2 | 27.143 | 280 | 157 | 13 | 119 | 379 | 545 | 796 | 8.10e-12 | 67.4 |
| Msa0441600 | AT1G70290.1 | 27.143 | 280 | 157 | 13 | 119 | 379 | 583 | 834 | 9.16e-12 | 67.4 |
Find 108 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTCATTTATTGGTTTA+AGG | 0.080685 | 3_3:+10006498 | None:intergenic |
| TTAAAGATAGATTCTGATTT+TGG | 0.104032 | 3_3:-10006775 | Msa0441600:three_prime_UTR |
| CCATGAGTTAATCGTAAATT+TGG | 0.145955 | 3_3:+10007645 | None:intergenic |
| GAACAATTCCCTTCATTTAT+TGG | 0.150996 | 3_3:+10006491 | None:intergenic |
| TTTCTTCATCTTCTTATTCT+TGG | 0.164614 | 3_3:-10011074 | Msa0441600:intron |
| GACCGATGAAGACGCATTTA+AGG | 0.192103 | 3_3:-10007255 | Msa0441600:intron |
| AATGAAGATGTGTATTTATA+AGG | 0.198078 | 3_3:+10011158 | None:intergenic |
| CTCGATGATGTTCGTTCTAA+TGG | 0.251756 | 3_3:-10009369 | Msa0441600:CDS |
| AGTGAGGTTAATAAAGGTTT+TGG | 0.252937 | 3_3:-10007125 | Msa0441600:CDS |
| AAACCGCGTTGCTTTCTTTA+GGG | 0.291548 | 3_3:+10007084 | None:intergenic |
| CCCTTCATTTATTGGTTTAA+GGG | 0.314433 | 3_3:+10006499 | None:intergenic |
| TCGGTAGACCTAATGCAATT+AGG | 0.323769 | 3_3:+10008411 | None:intergenic |
| TTGTGGAAGCTGTAAATTAA+TGG | 0.327539 | 3_3:-10006635 | Msa0441600:three_prime_UTR |
| TACTCACAAGAAAATATCTA+TGG | 0.331294 | 3_3:-10009316 | Msa0441600:CDS |
| TAAACCGCGTTGCTTTCTTT+AGG | 0.331760 | 3_3:+10007083 | None:intergenic |
| TAATCAAAATTATATAAAAT+AGG | 0.334019 | 3_3:+10006381 | None:intergenic |
| AGTCATGGAATGGACATAAT+TGG | 0.337966 | 3_3:-10008465 | Msa0441600:CDS |
| GAGGAGCATGATTTGTCTTC+AGG | 0.346590 | 3_3:+10009535 | None:intergenic |
| CTAGAGTTTCCCTCAGCAAC+TGG | 0.353880 | 3_3:-10009140 | Msa0441600:CDS |
| CAATAATAATAATGAGAGTT+AGG | 0.355918 | 3_3:+10011103 | None:intergenic |
| AGGTTCGACCGGTGATTGAC+TGG | 0.361618 | 3_3:-10007464 | Msa0441600:CDS |
| TAATGTACAGAGTTGGGATT+TGG | 0.368930 | 3_3:-10007703 | Msa0441600:intron |
| CGGTAGACCTAATGCAATTA+GGG | 0.375663 | 3_3:+10008412 | None:intergenic |
| CTGGAGTTAAAGCTTGTATT+AGG | 0.376719 | 3_3:-10010814 | Msa0441600:intron |
| ATAATCACCCTAATTGCATT+AGG | 0.394713 | 3_3:-10008419 | Msa0441600:CDS |
| AAGAAAATATCTATGGATAT+TGG | 0.399008 | 3_3:-10009309 | Msa0441600:CDS |
| CGCTCAGGATTGTCGACAAT+TGG | 0.399987 | 3_3:+10009041 | None:intergenic |
| ACCGGTGATTGACTGGGATA+AGG | 0.409395 | 3_3:-10007457 | Msa0441600:CDS |
| ACAATTCCACGGAAGAAGAT+AGG | 0.410826 | 3_3:-10009396 | Msa0441600:CDS |
| CTTCAGGTACATGAATTTGT+TGG | 0.418768 | 3_3:-10008513 | Msa0441600:intron |
| CCTTGATCTTGTCCTCGTTA+AGG | 0.420181 | 3_3:+10009494 | None:intergenic |
| TAAAACTGGTACCTTCTTAT+CGG | 0.421696 | 3_3:+10008392 | None:intergenic |
| ATGAAGATGTGTATTTATAA+GGG | 0.432922 | 3_3:+10011159 | None:intergenic |
| GTGTATTTATAAGGGCTGTT+TGG | 0.435403 | 3_3:+10011167 | None:intergenic |
| TCTGAAGAAGACCTCAAGAT+AGG | 0.435574 | 3_3:-10006700 | Msa0441600:three_prime_UTR |
| TGATTTGTCTTCAGGTCCAT+TGG | 0.443083 | 3_3:+10009543 | None:intergenic |
| TTCTCAAGTCACTTGTGGTA+TGG | 0.448368 | 3_3:-10006854 | Msa0441600:CDS |
| AGAAAAGTTGAAGTATTTGT+CGG | 0.453164 | 3_3:+10009435 | None:intergenic |
| GTTTCCATGTAATGCACGTT+AGG | 0.454235 | 3_3:-10011196 | Msa0441600:five_prime_UTR |
| TGCTGCTTATTTAACCTGGC+TGG | 0.454459 | 3_3:-10009259 | Msa0441600:intron |
| CCGGTGATTGACTGGGATAA+GGG | 0.455503 | 3_3:-10007456 | Msa0441600:CDS |
| ATGCATACCTCATCAATCAT+AGG | 0.460691 | 3_3:+10008242 | None:intergenic |
| CAGGATATTACATACGTTGT+CGG | 0.464014 | 3_3:+10009007 | None:intergenic |
| GCCCTTAAACCAATAAATGA+AGG | 0.465117 | 3_3:-10006500 | Msa0441600:three_prime_UTR |
| TTAACAGATCTTCATTATGC+TGG | 0.467705 | 3_3:-10008489 | Msa0441600:CDS |
| CAAATTACTAACCTTGCAAA+AGG | 0.474768 | 3_3:-10009107 | Msa0441600:CDS |
| CTGATGCTGCTTATTTAACC+TGG | 0.480480 | 3_3:-10009263 | Msa0441600:CDS |
| ATGATGTTCGTTCTAATGGT+TGG | 0.487662 | 3_3:-10009365 | Msa0441600:CDS |
| CATTGTTTCTTGATTACGAT+GGG | 0.487850 | 3_3:-10009073 | Msa0441600:CDS |
| GTCACCTAACGTGCATTACA+TGG | 0.490439 | 3_3:+10011192 | None:intergenic |
| CTTCATTATGCTGGTAGTCA+TGG | 0.492396 | 3_3:-10008480 | Msa0441600:CDS |
| AACCGCGTTGCTTTCTTTAG+GGG | 0.494436 | 3_3:+10007085 | None:intergenic |
| TTCCGTGGAATTGTTAGCGA+TGG | 0.496157 | 3_3:+10009405 | None:intergenic |
| CCCTTATCCCAGTCAATCAC+CGG | 0.500521 | 3_3:+10007456 | None:intergenic |
| GGAGAGCATGACAGACTTGA+AGG | 0.505126 | 3_3:+10009456 | None:intergenic |
| ACAAGATCAAGGCTCGGTGC+AGG | 0.507337 | 3_3:-10009483 | Msa0441600:CDS |
| CAACATTACAACCGCGAAAG+AGG | 0.507585 | 3_3:-10011221 | Msa0441600:five_prime_UTR |
| ATCCTTAGATCTGGATCCAA+TGG | 0.507924 | 3_3:-10009559 | Msa0441600:intron |
| AAGGTTAGTAATTTGTTCAA+AGG | 0.511038 | 3_3:+10009115 | None:intergenic |
| CATGGAAACAACCTCTTTCG+CGG | 0.511089 | 3_3:+10011210 | None:intergenic |
| TTTCCGACTGCAATAATTAG+CGG | 0.519792 | 3_3:-10008854 | Msa0441600:CDS |
| CTCTGTAGTATAATGTATAG+AGG | 0.522728 | 3_3:-10006823 | Msa0441600:exon |
| GAATTCTCCCTTAAATTGAA+AGG | 0.525250 | 3_3:+10006457 | None:intergenic |
| AACCTTAAATGCGTCTTCAT+CGG | 0.525404 | 3_3:+10007253 | None:intergenic |
| TCAGATATAGACTGTCTAAG+AGG | 0.526026 | 3_3:+10008441 | None:intergenic |
| TGTACAGAGTTGGGATTTGG+TGG | 0.528879 | 3_3:-10007700 | Msa0441600:intron |
| TAGCGGAAGAAGTCGTGAAA+AGG | 0.529643 | 3_3:-10008837 | Msa0441600:intron |
| CATTAGGTCTACCGATAAGA+AGG | 0.533743 | 3_3:-10008403 | Msa0441600:intron |
| TTCAAAGGCCCCAGTTGCTG+AGG | 0.545026 | 3_3:+10009130 | None:intergenic |
| TCGGACATGAAAGCACGCTC+AGG | 0.550059 | 3_3:+10009026 | None:intergenic |
| TAGAGTTTCCCTCAGCAACT+GGG | 0.550994 | 3_3:-10009139 | Msa0441600:CDS |
| GATGTGCTAGCTATATATAT+TGG | 0.554483 | 3_3:-10007287 | Msa0441600:CDS |
| CTTCCGCTAATTATTGCAGT+CGG | 0.556782 | 3_3:+10008851 | None:intergenic |
| ACCATAAGAATTACCTCTGA+AGG | 0.557104 | 3_3:+10007047 | None:intergenic |
| AAAATGTTATTCCTATCTTG+AGG | 0.559362 | 3_3:+10006689 | None:intergenic |
| CTCTCTGTGTGATCCTTCAG+AGG | 0.560782 | 3_3:-10007060 | Msa0441600:intron |
| TTATGCTGGTAGTCATGGAA+TGG | 0.563818 | 3_3:-10008475 | Msa0441600:CDS |
| GGAATTTCTCAAGTCACTTG+TGG | 0.574443 | 3_3:-10006859 | Msa0441600:CDS |
| CCTTAACGAGGACAAGATCA+AGG | 0.576103 | 3_3:-10009494 | Msa0441600:CDS |
| GCAGGAATTCAGCAGCAGGT+TGG | 0.579369 | 3_3:+10008264 | None:intergenic |
| CCAAATTTACGATTAACTCA+TGG | 0.579608 | 3_3:-10007645 | Msa0441600:CDS |
| ATACCTCATCAATCATAGGC+AGG | 0.580942 | 3_3:+10008246 | None:intergenic |
| ATATCTATGGATATTGGTCA+TGG | 0.583838 | 3_3:-10009303 | Msa0441600:CDS |
| ATAGGCAGGAATTCAGCAGC+AGG | 0.587802 | 3_3:+10008260 | None:intergenic |
| AAGATTATCAAAATCTACCA+AGG | 0.590336 | 3_3:-10006588 | Msa0441600:three_prime_UTR |
| CTATATATATTGGTGACGAT+CGG | 0.591664 | 3_3:-10007277 | Msa0441600:CDS |
| CCCTTAAACCAATAAATGAA+GGG | 0.593813 | 3_3:-10006499 | Msa0441600:three_prime_UTR |
| CGCGTTGCTTTCTTTAGGGG+CGG | 0.594578 | 3_3:+10007088 | None:intergenic |
| GGTTCGACCGGTGATTGACT+GGG | 0.599893 | 3_3:-10007463 | Msa0441600:CDS |
| TCAAAGGCCCCAGTTGCTGA+GGG | 0.603038 | 3_3:+10009131 | None:intergenic |
| AGAATTCCTATCTTCTTCCG+TGG | 0.605970 | 3_3:+10009390 | None:intergenic |
| GCATTGTTTCTTGATTACGA+TGG | 0.607237 | 3_3:-10009074 | Msa0441600:CDS |
| GTCCATCGCTAACAATTCCA+CGG | 0.612604 | 3_3:-10009407 | Msa0441600:CDS |
| ACGATTAACTCATGGTCGGA+AGG | 0.614382 | 3_3:-10007637 | Msa0441600:intron |
| GTATGTGTTTCATACCAGCC+AGG | 0.620718 | 3_3:+10009245 | None:intergenic |
| AGATTATCAAAATCTACCAA+GGG | 0.625044 | 3_3:-10006587 | Msa0441600:three_prime_UTR |
| ATTTACGATTAACTCATGGT+CGG | 0.632995 | 3_3:-10007641 | Msa0441600:CDS |
| AGAGTTTCCCTCAGCAACTG+GGG | 0.635565 | 3_3:-10009138 | Msa0441600:CDS |
| CTGATACTGCAACCTTAACG+AGG | 0.654522 | 3_3:-10009506 | Msa0441600:CDS |
| ATTCCTGCCTATGATTGATG+AGG | 0.658507 | 3_3:-10008249 | Msa0441600:intron |
| ACGAGGACAAGATCAAGGCT+CGG | 0.658800 | 3_3:-10009489 | Msa0441600:CDS |
| GAGTGTACAAAAGACATCAA+AGG | 0.661986 | 3_3:-10007939 | Msa0441600:CDS |
| GATTATCAAAATCTACCAAG+GGG | 0.673290 | 3_3:-10006586 | Msa0441600:three_prime_UTR |
| ACATTATCGTAATGTAGACG+AGG | 0.705017 | 3_3:-10007880 | Msa0441600:CDS |
| TTATCGTAATGTAGACGAGG+AGG | 0.716669 | 3_3:-10007877 | Msa0441600:intron |
| GTTGCAGTATCAGCAATGCG+AGG | 0.729280 | 3_3:+10009516 | None:intergenic |
| ATTATCAAAATCTACCAAGG+GGG | 0.730497 | 3_3:-10006585 | Msa0441600:three_prime_UTR |
| CGCCCCTAAAGAAAGCAACG+CGG | 0.751129 | 3_3:-10007087 | Msa0441600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATTATTTTTTTTGG+AGG | - | chr3_3:10006836-10006855 | Msa0441600:CDS | 10.0% |
| !!! | TTTGTTTGTTATTATTTTAA+TGG | - | chr3_3:10006930-10006949 | Msa0441600:intron | 10.0% |
| !! | TGAAATAAGTTATTAAAAAA+AGG | + | chr3_3:10007140-10007159 | None:intergenic | 10.0% |
| !!! | TTTTTAATAACTTATTTCAT+AGG | - | chr3_3:10007141-10007160 | Msa0441600:intron | 10.0% |
| !!! | TTTTAATAACTTATTTCATA+GGG | - | chr3_3:10007142-10007161 | Msa0441600:intron | 10.0% |
| !! | TTTATATAACTGATATAAAA+TGG | - | chr3_3:10010434-10010453 | Msa0441600:intron | 10.0% |
| !!! | TAAATAATATTTCTTTTCTA+GGG | + | chr3_3:10011048-10011067 | None:intergenic | 10.0% |
| !!! | TTAAATAATATTTCTTTTCT+AGG | + | chr3_3:10011049-10011068 | None:intergenic | 10.0% |
| !!! | ATTATATTACTTTAGTTTCA+GGG | + | chr3_3:10007243-10007262 | None:intergenic | 15.0% |
| !!! | AATTATATTACTTTAGTTTC+AGG | + | chr3_3:10007244-10007263 | None:intergenic | 15.0% |
| !!! | TTATTTTACTTGTTATTGAA+CGG | + | chr3_3:10007545-10007564 | None:intergenic | 15.0% |
| !!! | TGTTATTTTTTATATCATGA+TGG | - | chr3_3:10007701-10007720 | Msa0441600:intron | 15.0% |
| !!! | TTTTGTTTTGTTAAAAGTTT+TGG | - | chr3_3:10007941-10007960 | Msa0441600:CDS | 15.0% |
| !!! | ATCAATTTTGTTCTAATTTA+AGG | - | chr3_3:10007988-10008007 | Msa0441600:intron | 15.0% |
| !! | GAAGATTATAAATCAATATA+GGG | + | chr3_3:10009283-10009302 | None:intergenic | 15.0% |
| !! | AGAAGATTATAAATCAATAT+AGG | + | chr3_3:10009284-10009303 | None:intergenic | 15.0% |
| !!! | TTATAATCTTCTAAAATTAC+AGG | - | chr3_3:10009292-10009311 | Msa0441600:CDS | 15.0% |
| !!! | TATAATCTTCTAAAATTACA+GGG | - | chr3_3:10009293-10009312 | Msa0441600:CDS | 15.0% |
| !!! | AATCTAGAATAAAAATTGAT+AGG | + | chr3_3:10009415-10009434 | None:intergenic | 15.0% |
| !!! | TTTTATTCTAGATTGAAATA+CGG | - | chr3_3:10009421-10009440 | Msa0441600:CDS | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | - | chr3_3:10009532-10009551 | Msa0441600:CDS | 15.0% |
| !!! | AACAAATTTTTTATACAAGA+GGG | + | chr3_3:10009783-10009802 | None:intergenic | 15.0% |
| !!! | AAACAAATTTTTTATACAAG+AGG | + | chr3_3:10009784-10009803 | None:intergenic | 15.0% |
| !! | TATATCAGTTATATAAAGTA+AGG | + | chr3_3:10010431-10010450 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTTCTGAATTAT+TGG | - | chr3_3:10011070-10011089 | Msa0441600:intron | 15.0% |
| !! | AAATTGAAAGGAAAAAATAA+AGG | + | chr3_3:10011132-10011151 | None:intergenic | 15.0% |
| !!! | TATTTTTTCCTTTCAATTTA+AGG | - | chr3_3:10011133-10011152 | Msa0441600:five_prime_UTR | 15.0% |
| !!! | ATTTTTTCCTTTCAATTTAA+GGG | - | chr3_3:10011134-10011153 | Msa0441600:five_prime_UTR | 15.0% |
| !!! | TCATTTTTTTATATGTACTT+TGG | - | chr3_3:10011170-10011189 | Msa0441600:five_prime_UTR | 15.0% |
| !! | ATGAAGATGTGTATTTATAA+GGG | + | chr3_3:10006442-10006461 | None:intergenic | 20.0% |
| !! | AATGAAGATGTGTATTTATA+AGG | + | chr3_3:10006443-10006462 | None:intergenic | 20.0% |
| !! | CAATAATAATAATGAGAGTT+AGG | + | chr3_3:10006498-10006517 | None:intergenic | 20.0% |
| !! | GTTAATATTAGAAACATGTT+TGG | + | chr3_3:10006667-10006686 | None:intergenic | 20.0% |
| !! | TTAACTCTTTCTTACATATT+TGG | - | chr3_3:10006682-10006701 | Msa0441600:three_prime_UTR | 20.0% |
| !! | GAATAATAACCATTAGTAAA+AGG | + | chr3_3:10007020-10007039 | None:intergenic | 20.0% |
| !!! | TAATATAATTTGCCAACATT+TGG | - | chr3_3:10007254-10007273 | Msa0441600:intron | 20.0% |
| !!! | TTCTTTTTATAACCAAATGT+TGG | + | chr3_3:10007269-10007288 | None:intergenic | 20.0% |
| !!! | AACTTTTTCAAACTTTTGTT+TGG | + | chr3_3:10007679-10007698 | None:intergenic | 20.0% |
| !! | AATTTAATAGGTAGAAGAAT+TGG | + | chr3_3:10007748-10007767 | None:intergenic | 20.0% |
| !! | TTGCATATGCATAATTTAAT+AGG | + | chr3_3:10007760-10007779 | None:intergenic | 20.0% |
| !!! | TTGGTTTTAAAGTAGAAATT+TGG | - | chr3_3:10007960-10007979 | Msa0441600:CDS | 20.0% |
| !! | AAGAAAATATCTATGGATAT+TGG | - | chr3_3:10008289-10008308 | Msa0441600:intron | 20.0% |
| !!! | TTTTTACAAGAAAAATGTTG+CGG | + | chr3_3:10009018-10009037 | None:intergenic | 20.0% |
| !!! | TTCTAAAAGTATCTTTTGAA+AGG | - | chr3_3:10009255-10009274 | Msa0441600:intron | 20.0% |
| !!! | TCTAAAAGTATCTTTTGAAA+GGG | - | chr3_3:10009256-10009275 | Msa0441600:intron | 20.0% |
| !! | TGAAAATGAAACTAAATAAG+AGG | + | chr3_3:10009873-10009892 | None:intergenic | 20.0% |
| !! | TAAAATGAGTAGAAAAGTTT+AGG | + | chr3_3:10010005-10010024 | None:intergenic | 20.0% |
| !!! | GTTAGTTTGTTGATTATTAA+TGG | - | chr3_3:10010201-10010220 | Msa0441600:intron | 20.0% |
| !! | GAATAATGTATGTATCATTA+GGG | - | chr3_3:10010656-10010675 | Msa0441600:intron | 20.0% |
| !!! | TTAAAGATAGATTCTGATTT+TGG | - | chr3_3:10010823-10010842 | Msa0441600:five_prime_UTR | 20.0% |
| !!! | TAAAGATAGATTCTGATTTT+GGG | - | chr3_3:10010824-10010843 | Msa0441600:five_prime_UTR | 20.0% |
| !!! | TGAGAAAATTTCAATTTTCA+AGG | - | chr3_3:10010853-10010872 | Msa0441600:five_prime_UTR | 20.0% |
| !!! | GAGAAAATTTCAATTTTCAA+GGG | - | chr3_3:10010854-10010873 | Msa0441600:five_prime_UTR | 20.0% |
| ! | TTTCTTCATCTTCTTATTCT+TGG | - | chr3_3:10006524-10006543 | Msa0441600:three_prime_UTR | 25.0% |
| !! | TCTTTCACTTTCTTTTCTTA+GGG | - | chr3_3:10006570-10006589 | Msa0441600:three_prime_UTR | 25.0% |
| !!! | TTTTTAAGATTCTTGAACCT+TGG | - | chr3_3:10006885-10006904 | Msa0441600:intron | 25.0% |
| !!! | TTGTTGACTTTCTATTGTTT+TGG | - | chr3_3:10006966-10006985 | Msa0441600:intron | 25.0% |
| !!! | TTGTGTACTTTCTTTTGATT+TGG | - | chr3_3:10007067-10007086 | Msa0441600:CDS | 25.0% |
| !! | TTTGAAATCACTCATGTTAT+AGG | - | chr3_3:10007416-10007435 | Msa0441600:intron | 25.0% |
| ! | AGCAATTATACATAGAACAT+GGG | + | chr3_3:10007486-10007505 | None:intergenic | 25.0% |
| ! | AAGCAATTATACATAGAACA+TGG | + | chr3_3:10007487-10007506 | None:intergenic | 25.0% |
| ! | TGTAAAATTATCCTTAGATC+TGG | - | chr3_3:10008030-10008049 | Msa0441600:intron | 25.0% |
| !! | AGAAAAGTTGAAGTATTTGT+CGG | + | chr3_3:10008166-10008185 | None:intergenic | 25.0% |
| !! | ATAGATATTTTCTTGTGAGT+AGG | + | chr3_3:10008283-10008302 | None:intergenic | 25.0% |
| ! | TACTCACAAGAAAATATCTA+TGG | - | chr3_3:10008282-10008301 | Msa0441600:CDS | 25.0% |
| ! | TACAAAAAAGGAAACGAATA+AGG | + | chr3_3:10008428-10008447 | None:intergenic | 25.0% |
| ! | AGCTGCAAAAATTACAAAAA+AGG | + | chr3_3:10008440-10008459 | None:intergenic | 25.0% |
| !!! | AAGGTTAGTAATTTGTTCAA+AGG | + | chr3_3:10008486-10008505 | None:intergenic | 25.0% |
| ! | ACAAGAGAAGAAAAATAATC+AGG | + | chr3_3:10008654-10008673 | None:intergenic | 25.0% |
| ! | ATTTACAATTCTCTATATGC+AGG | + | chr3_3:10008859-10008878 | None:intergenic | 25.0% |
| ! | ATTAAATAAAGTGACACTGA+TGG | + | chr3_3:10008980-10008999 | None:intergenic | 25.0% |
| ! | GTAAAAAAAATGTTCGTGTT+AGG | - | chr3_3:10009031-10009050 | Msa0441600:CDS | 25.0% |
| ! | TTGAATGTAAATACATCTGT+CGG | + | chr3_3:10009507-10009526 | None:intergenic | 25.0% |
| ! | TGATGAAATATGTGATAAGT+TGG | + | chr3_3:10009833-10009852 | None:intergenic | 25.0% |
| ! | ACTTATCACATATTTCATCA+TGG | - | chr3_3:10009833-10009852 | Msa0441600:intron | 25.0% |
| ! | TTTCATATAATGTACAGAGT+TGG | - | chr3_3:10009888-10009907 | Msa0441600:intron | 25.0% |
| ! | TTCATATAATGTACAGAGTT+GGG | - | chr3_3:10009889-10009908 | Msa0441600:intron | 25.0% |
| ! | AACAGATATGTCTCTTAAAA+AGG | + | chr3_3:10010069-10010088 | None:intergenic | 25.0% |
| ! | GGAATAATGTATGTATCATT+AGG | - | chr3_3:10010655-10010674 | Msa0441600:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+AGG | + | chr3_3:10010682-10010701 | None:intergenic | 25.0% |
| ! | AAAATGTTATTCCTATCTTG+AGG | + | chr3_3:10010912-10010931 | None:intergenic | 25.0% |
| ! | AAGATTATCAAAATCTACCA+AGG | - | chr3_3:10011010-10011029 | Msa0441600:intron | 25.0% |
| ! | AGATTATCAAAATCTACCAA+GGG | - | chr3_3:10011011-10011030 | Msa0441600:intron | 25.0% |
| ! | CTCTTTCACTTTCTTTTCTT+AGG | - | chr3_3:10006569-10006588 | Msa0441600:three_prime_UTR | 30.0% |
| !!! | GCTAAATATTTTGAAGTAGC+TGG | - | chr3_3:10006765-10006784 | Msa0441600:three_prime_UTR | 30.0% |
| ! | TTTCCTTTGCCTTTTACTAA+TGG | - | chr3_3:10007008-10007027 | Msa0441600:intron | 30.0% |
| TAACCATTAGTAAAAGGCAA+AGG | + | chr3_3:10007014-10007033 | None:intergenic | 30.0% | |
| TTTCATAGGGTAAAGTGATT+AGG | - | chr3_3:10007155-10007174 | Msa0441600:intron | 30.0% | |
| GTAAAGTGATTAGGTAGTTA+TGG | - | chr3_3:10007164-10007183 | Msa0441600:intron | 30.0% | |
| ! | CCTCTGATTTAAAACTTCTT+TGG | + | chr3_3:10007207-10007226 | None:intergenic | 30.0% |
| !!! | CCAAAGAAGTTTTAAATCAG+AGG | - | chr3_3:10007204-10007223 | Msa0441600:intron | 30.0% |
| ACAAATCTTCCTTGCATTAA+TGG | - | chr3_3:10007441-10007460 | Msa0441600:CDS | 30.0% | |
| AAGTTGACATCATTCTTCAT+TGG | - | chr3_3:10007610-10007629 | Msa0441600:intron | 30.0% | |
| TAGAAGTCTGCTAGAATTTA+TGG | - | chr3_3:10007636-10007655 | Msa0441600:intron | 30.0% | |
| ATCATGATGGTTATTTGAGA+TGG | - | chr3_3:10007714-10007733 | Msa0441600:intron | 30.0% | |
| ! | AATACTTCAACTTTTCTGCA+TGG | - | chr3_3:10008169-10008188 | Msa0441600:intron | 30.0% |
| ATATCTATGGATATTGGTCA+TGG | - | chr3_3:10008295-10008314 | Msa0441600:intron | 30.0% | |
| !! | TACCTCTATGTAATTTGTTG+CGG | - | chr3_3:10008382-10008401 | Msa0441600:intron | 30.0% |
| CAAATTACTAACCTTGCAAA+AGG | - | chr3_3:10008491-10008510 | Msa0441600:CDS | 30.0% | |
| ! | CATTGTTTCTTGATTACGAT+GGG | - | chr3_3:10008525-10008544 | Msa0441600:intron | 30.0% |
| TTCATGTACCTGAAGAAATA+AGG | + | chr3_3:10009080-10009099 | None:intergenic | 30.0% | |
| TTAACAGATCTTCATTATGC+TGG | - | chr3_3:10009109-10009128 | Msa0441600:CDS | 30.0% | |
| ATAATCACCCTAATTGCATT+AGG | - | chr3_3:10009179-10009198 | Msa0441600:intron | 30.0% | |
| TAAAACTGGTACCTTCTTAT+CGG | + | chr3_3:10009209-10009228 | None:intergenic | 30.0% | |
| ! | AGTGAAGTAAGATCTAAAAC+TGG | + | chr3_3:10009223-10009242 | None:intergenic | 30.0% |
| !! | TCTTCTAAAATTACAGGGTA+AGG | - | chr3_3:10009298-10009317 | Msa0441600:CDS | 30.0% |
| AAGCCTTTGATATGAAGTTT+CGG | + | chr3_3:10009469-10009488 | None:intergenic | 30.0% | |
| ! | TTTGATGTCTTTTGTACACT+CGG | + | chr3_3:10009660-10009679 | None:intergenic | 30.0% |
| ! | ACGCGTTTTTGATATTATGA+AGG | - | chr3_3:10009925-10009944 | Msa0441600:intron | 30.0% |
| CCATGAGTTAATCGTAAATT+TGG | + | chr3_3:10009956-10009975 | None:intergenic | 30.0% | |
| CCAAATTTACGATTAACTCA+TGG | - | chr3_3:10009953-10009972 | Msa0441600:intron | 30.0% | |
| ATTTACGATTAACTCATGGT+CGG | - | chr3_3:10009957-10009976 | Msa0441600:intron | 30.0% | |
| TATGTTTACCGATAATGTTC+AGG | - | chr3_3:10010105-10010124 | Msa0441600:intron | 30.0% | |
| !! | CTCTAAAACCTGAACATTAT+CGG | + | chr3_3:10010116-10010135 | None:intergenic | 30.0% |
| !! | GGTTAGTTTATGTGTATTCA+AGG | - | chr3_3:10010222-10010241 | Msa0441600:intron | 30.0% |
| GATGTGCTAGCTATATATAT+TGG | - | chr3_3:10010311-10010330 | Msa0441600:intron | 30.0% | |
| !! | CTATATATATTGGTGACGAT+CGG | - | chr3_3:10010321-10010340 | Msa0441600:intron | 30.0% |
| !! | GTTTTGAGTGAGGTTAATAA+AGG | - | chr3_3:10010467-10010486 | Msa0441600:intron | 30.0% |
| ! | AGTGAGGTTAATAAAGGTTT+TGG | - | chr3_3:10010473-10010492 | Msa0441600:intron | 30.0% |
| ! | GCAATTTTGTACATTTGCTT+TGG | - | chr3_3:10010604-10010623 | Msa0441600:intron | 30.0% |
| TTAAAGTCAAACTTGCATTG+TGG | - | chr3_3:10010702-10010721 | Msa0441600:intron | 30.0% | |
| CTCTGTAGTATAATGTATAG+AGG | - | chr3_3:10010775-10010794 | Msa0441600:intron | 30.0% | |
| !!! | ATAGATTCTGATTTTGGGTT+TGG | - | chr3_3:10010829-10010848 | Msa0441600:five_prime_UTR | 30.0% |
| !! | TTCAATTTTCAAGGGTTTCT+TGG | - | chr3_3:10010862-10010881 | Msa0441600:five_prime_UTR | 30.0% |
| TTGTGGAAGCTGTAAATTAA+TGG | - | chr3_3:10010963-10010982 | Msa0441600:intron | 30.0% | |
| GATTATCAAAATCTACCAAG+GGG | - | chr3_3:10011012-10011031 | Msa0441600:intron | 30.0% | |
| ATTATCAAAATCTACCAAGG+GGG | - | chr3_3:10011013-10011032 | Msa0441600:intron | 30.0% | |
| !! | CCCTTCATTTATTGGTTTAA+GGG | + | chr3_3:10011102-10011121 | None:intergenic | 30.0% |
| CCCTTAAACCAATAAATGAA+GGG | - | chr3_3:10011099-10011118 | Msa0441600:five_prime_UTR | 30.0% | |
| !! | TCCCTTCATTTATTGGTTTA+AGG | + | chr3_3:10011103-10011122 | None:intergenic | 30.0% |
| GAACAATTCCCTTCATTTAT+TGG | + | chr3_3:10011110-10011129 | None:intergenic | 30.0% | |
| GAATTCTCCCTTAAATTGAA+AGG | + | chr3_3:10011144-10011163 | None:intergenic | 30.0% | |
| GTGTATTTATAAGGGCTGTT+TGG | + | chr3_3:10006434-10006453 | None:intergenic | 35.0% | |
| CTGGAGTTAAAGCTTGTATT+AGG | - | chr3_3:10006784-10006803 | Msa0441600:three_prime_UTR | 35.0% | |
| AAGTGATTAGGTAGTTATGG+TGG | - | chr3_3:10007167-10007186 | Msa0441600:intron | 35.0% | |
| TGTTATGCACGTACAAGTAT+TGG | + | chr3_3:10007293-10007312 | None:intergenic | 35.0% | |
| CTGAATAAGCCATTAATGCA+AGG | + | chr3_3:10007453-10007472 | None:intergenic | 35.0% | |
| ATGATGTTCGTTCTAATGGT+TGG | - | chr3_3:10008233-10008252 | Msa0441600:intron | 35.0% | |
| TTCCGCAACAAATTACATAG+AGG | + | chr3_3:10008387-10008406 | None:intergenic | 35.0% | |
| !! | TGTAATTTGTTGCGGAAGTT+CGG | - | chr3_3:10008390-10008409 | Msa0441600:intron | 35.0% |
| ! | CTATTTTCTTGCCTTTTGCA+AGG | + | chr3_3:10008505-10008524 | None:intergenic | 35.0% |
| ! | GCATTGTTTCTTGATTACGA+TGG | - | chr3_3:10008524-10008543 | Msa0441600:intron | 35.0% |
| CAGGATATTACATACGTTGT+CGG | + | chr3_3:10008594-10008613 | None:intergenic | 35.0% | |
| ACGTATGTAATATCCTGCAA+AGG | - | chr3_3:10008597-10008616 | Msa0441600:intron | 35.0% | |
| TTTCCGACTGCAATAATTAG+CGG | - | chr3_3:10008744-10008763 | Msa0441600:intron | 35.0% | |
| AAGAAAAATGTTGCGGAAGA+GGG | + | chr3_3:10009011-10009030 | None:intergenic | 35.0% | |
| CTTCAGGTACATGAATTTGT+TGG | - | chr3_3:10009085-10009104 | Msa0441600:CDS | 35.0% | |
| AGTCATGGAATGGACATAAT+TGG | - | chr3_3:10009133-10009152 | Msa0441600:CDS | 35.0% | |
| TCAGATATAGACTGTCTAAG+AGG | + | chr3_3:10009160-10009179 | None:intergenic | 35.0% | |
| ATGCATACCTCATCAATCAT+AGG | + | chr3_3:10009359-10009378 | None:intergenic | 35.0% | |
| GAGTGTACAAAAGACATCAA+AGG | - | chr3_3:10009659-10009678 | Msa0441600:intron | 35.0% | |
| ACATTATCGTAATGTAGACG+AGG | - | chr3_3:10009718-10009737 | Msa0441600:intron | 35.0% | |
| GACAACCAAAAAGGAAAGAA+GGG | + | chr3_3:10009761-10009780 | None:intergenic | 35.0% | |
| TAATGTACAGAGTTGGGATT+TGG | - | chr3_3:10009895-10009914 | Msa0441600:intron | 35.0% | |
| !! | CGATAATGTTCAGGTTTTAG+AGG | - | chr3_3:10010114-10010133 | Msa0441600:intron | 35.0% |
| ! | ACATTTTTGCTCGAATCACT+TGG | - | chr3_3:10010175-10010194 | Msa0441600:intron | 35.0% |
| AACCTTAAATGCGTCTTCAT+CGG | + | chr3_3:10010348-10010367 | None:intergenic | 35.0% | |
| !! | GATATAAAATGGACTGCAAC+AGG | - | chr3_3:10010445-10010464 | Msa0441600:intron | 35.0% |
| TCCTTCAGAGGTAATTCTTA+TGG | - | chr3_3:10010550-10010569 | Msa0441600:intron | 35.0% | |
| ACCATAAGAATTACCTCTGA+AGG | + | chr3_3:10010554-10010573 | None:intergenic | 35.0% | |
| ! | CATGTTGTTTGCAAGTACAT+TGG | - | chr3_3:10010634-10010653 | Msa0441600:intron | 35.0% |
| !!! | TTTTTTGCTCAAAGCTCTTG+TGG | - | chr3_3:10010946-10010965 | Msa0441600:intron | 35.0% |
| GCCCTTAAACCAATAAATGA+AGG | - | chr3_3:10011098-10011117 | Msa0441600:five_prime_UTR | 35.0% | |
| GTTTCCATGTAATGCACGTT+AGG | - | chr3_3:10006402-10006421 | Msa0441600:three_prime_UTR | 40.0% | |
| TTGCACATTGCAAGAAACCA+AGG | + | chr3_3:10006905-10006924 | None:intergenic | 40.0% | |
| ATCCTTAGATCTGGATCCAA+TGG | - | chr3_3:10008039-10008058 | Msa0441600:intron | 40.0% | |
| ! | TGATTTGTCTTCAGGTCCAT+TGG | + | chr3_3:10008058-10008077 | None:intergenic | 40.0% |
| ACAATTCCACGGAAGAAGAT+AGG | - | chr3_3:10008202-10008221 | Msa0441600:intron | 40.0% | |
| AGAATTCCTATCTTCTTCCG+TGG | + | chr3_3:10008211-10008230 | None:intergenic | 40.0% | |
| CTCGATGATGTTCGTTCTAA+TGG | - | chr3_3:10008229-10008248 | Msa0441600:intron | 40.0% | |
| ! | CTGATGCTGCTTATTTAACC+TGG | - | chr3_3:10008335-10008354 | Msa0441600:intron | 40.0% |
| ! | CTCTGCTACACTTTTAACAG+CGG | + | chr3_3:10008721-10008740 | None:intergenic | 40.0% |
| CTTCCGCTAATTATTGCAGT+CGG | + | chr3_3:10008750-10008769 | None:intergenic | 40.0% | |
| TCATGTTTGTACTAGCTCAG+TGG | - | chr3_3:10008888-10008907 | Msa0441600:CDS | 40.0% | |
| !! | ATTTTTCAACTGTACCCGAG+GGG | + | chr3_3:10008955-10008974 | None:intergenic | 40.0% |
| !! | CATTTTTCAACTGTACCCGA+GGG | + | chr3_3:10008956-10008975 | None:intergenic | 40.0% |
| !! | TCATTTTTCAACTGTACCCG+AGG | + | chr3_3:10008957-10008976 | None:intergenic | 40.0% |
| CAAGAAAAATGTTGCGGAAG+AGG | + | chr3_3:10009012-10009031 | None:intergenic | 40.0% | |
| AAATAAGGCGCAACAATGGT+TGG | + | chr3_3:10009065-10009084 | None:intergenic | 40.0% | |
| GAAGAAATAAGGCGCAACAA+TGG | + | chr3_3:10009069-10009088 | None:intergenic | 40.0% | |
| !! | TTGTTGCGCCTTATTTCTTC+AGG | - | chr3_3:10009069-10009088 | Msa0441600:CDS | 40.0% |
| CTTCATTATGCTGGTAGTCA+TGG | - | chr3_3:10009118-10009137 | Msa0441600:CDS | 40.0% | |
| TTATGCTGGTAGTCATGGAA+TGG | - | chr3_3:10009123-10009142 | Msa0441600:CDS | 40.0% | |
| CGGTAGACCTAATGCAATTA+GGG | + | chr3_3:10009189-10009208 | None:intergenic | 40.0% | |
| TCGGTAGACCTAATGCAATT+AGG | + | chr3_3:10009190-10009209 | None:intergenic | 40.0% | |
| CATTAGGTCTACCGATAAGA+AGG | - | chr3_3:10009195-10009214 | Msa0441600:intron | 40.0% | |
| ATTCCTGCCTATGATTGATG+AGG | - | chr3_3:10009349-10009368 | Msa0441600:CDS | 40.0% | |
| ATACCTCATCAATCATAGGC+AGG | + | chr3_3:10009355-10009374 | None:intergenic | 40.0% | |
| GCACCGAAACTTCATATCAA+AGG | - | chr3_3:10009463-10009482 | Msa0441600:CDS | 40.0% | |
| CTTCATATCAAAGGCTTGTC+TGG | - | chr3_3:10009472-10009491 | Msa0441600:CDS | 40.0% | |
| GTAAATACATCTGTCGGTGT+TGG | + | chr3_3:10009501-10009520 | None:intergenic | 40.0% | |
| ! | TGAAGCACTAACATAGACAC+CGG | + | chr3_3:10009592-10009611 | None:intergenic | 40.0% |
| AGTGCTTCATAGATCATGAC+TGG | - | chr3_3:10009603-10009622 | Msa0441600:intron | 40.0% | |
| GTGCTTCATAGATCATGACT+GGG | - | chr3_3:10009604-10009623 | Msa0441600:intron | 40.0% | |
| TTATCGTAATGTAGACGAGG+AGG | - | chr3_3:10009721-10009740 | Msa0441600:intron | 40.0% | |
| GGACAACCAAAAAGGAAAGA+AGG | + | chr3_3:10009762-10009781 | None:intergenic | 40.0% | |
| TACAAGAGGGACAACCAAAA+AGG | + | chr3_3:10009770-10009789 | None:intergenic | 40.0% | |
| TGTATTGCAGTTACTGACAC+TGG | - | chr3_3:10010255-10010274 | Msa0441600:intron | 40.0% | |
| GTATTGCAGTTACTGACACT+GGG | - | chr3_3:10010256-10010275 | Msa0441600:intron | 40.0% | |
| ! | CACTGGGCATGTTTTCATTT+AGG | - | chr3_3:10010272-10010291 | Msa0441600:intron | 40.0% |
| ! | AAACCGCGTTGCTTTCTTTA+GGG | + | chr3_3:10010517-10010536 | None:intergenic | 40.0% |
| ! | TAAACCGCGTTGCTTTCTTT+AGG | + | chr3_3:10010518-10010537 | None:intergenic | 40.0% |
| !! | TGTATCATTAGGGCCTTGTT+TGG | - | chr3_3:10010666-10010685 | Msa0441600:intron | 40.0% |
| ACTTGCATTGTGGTATATGC+AGG | - | chr3_3:10010712-10010731 | Msa0441600:intron | 40.0% | |
| ATTGTGGTATATGCAGGTGA+TGG | - | chr3_3:10010718-10010737 | Msa0441600:intron | 40.0% | |
| GGAATTTCTCAAGTCACTTG+TGG | - | chr3_3:10010739-10010758 | Msa0441600:intron | 40.0% | |
| TTCTCAAGTCACTTGTGGTA+TGG | - | chr3_3:10010744-10010763 | Msa0441600:intron | 40.0% | |
| TCTGAAGAAGACCTCAAGAT+AGG | - | chr3_3:10010898-10010917 | Msa0441600:intron | 40.0% | |
| CAACATTACAACCGCGAAAG+AGG | - | chr3_3:10006377-10006396 | Msa0441600:three_prime_UTR | 45.0% | |
| CATGGAAACAACCTCTTTCG+CGG | + | chr3_3:10006391-10006410 | None:intergenic | 45.0% | |
| GTCACCTAACGTGCATTACA+TGG | + | chr3_3:10006409-10006428 | None:intergenic | 45.0% | |
| GTCCATTGGATCCAGATCTA+AGG | + | chr3_3:10008044-10008063 | None:intergenic | 45.0% | |
| ! | GAGGAGCATGATTTGTCTTC+AGG | + | chr3_3:10008066-10008085 | None:intergenic | 45.0% |
| CTGATACTGCAACCTTAACG+AGG | - | chr3_3:10008092-10008111 | Msa0441600:intron | 45.0% | |
| CCTTGATCTTGTCCTCGTTA+AGG | + | chr3_3:10008107-10008126 | None:intergenic | 45.0% | |
| CCTTAACGAGGACAAGATCA+AGG | - | chr3_3:10008104-10008123 | Msa0441600:intron | 45.0% | |
| GTCCATCGCTAACAATTCCA+CGG | - | chr3_3:10008191-10008210 | Msa0441600:intron | 45.0% | |
| TTCCGTGGAATTGTTAGCGA+TGG | + | chr3_3:10008196-10008215 | None:intergenic | 45.0% | |
| ! | TGCTGCTTATTTAACCTGGC+TGG | - | chr3_3:10008339-10008358 | Msa0441600:intron | 45.0% |
| GTATGTGTTTCATACCAGCC+AGG | + | chr3_3:10008356-10008375 | None:intergenic | 45.0% | |
| TAGAGTTTCCCTCAGCAACT+GGG | - | chr3_3:10008459-10008478 | Msa0441600:CDS | 45.0% | |
| TAGCGGAAGAAGTCGTGAAA+AGG | - | chr3_3:10008761-10008780 | Msa0441600:intron | 45.0% | |
| !! | ATGAAGTTTCGGTGCTACAC+AGG | + | chr3_3:10009458-10009477 | None:intergenic | 45.0% |
| ! | GAAGCACTAACATAGACACC+GGG | + | chr3_3:10009591-10009610 | None:intergenic | 45.0% |
| TGACTGGGTCATGTTTATGC+AGG | - | chr3_3:10009619-10009638 | Msa0441600:intron | 45.0% | |
| CCAAAAAGGAAAGAAGGGAG+TGG | + | chr3_3:10009756-10009775 | None:intergenic | 45.0% | |
| ! | CCACTCCCTTCTTTCCTTTT+TGG | - | chr3_3:10009753-10009772 | Msa0441600:intron | 45.0% |
| TGTACAGAGTTGGGATTTGG+TGG | - | chr3_3:10009898-10009917 | Msa0441600:intron | 45.0% | |
| ACGATTAACTCATGGTCGGA+AGG | - | chr3_3:10009961-10009980 | Msa0441600:intron | 45.0% | |
| !!! | TCAGGTTTTAGAGGTTCGAC+CGG | - | chr3_3:10010123-10010142 | Msa0441600:intron | 45.0% |
| GACCGATGAAGACGCATTTA+AGG | - | chr3_3:10010343-10010362 | Msa0441600:intron | 45.0% | |
| !!! | ACTGCAACAGGTTTTGAGTG+AGG | - | chr3_3:10010457-10010476 | Msa0441600:intron | 45.0% |
| ! | AACCGCGTTGCTTTCTTTAG+GGG | + | chr3_3:10010516-10010535 | None:intergenic | 45.0% |
| TAGGGACATAATAACCCCCT+TGG | + | chr3_3:10011030-10011049 | None:intergenic | 45.0% | |
| !!! | TTCTTTATTATTATTTTTTT+TGG | - | chr3_3:10006833-10006852 | Msa0441600:CDS | 5.0% |
| !! | CAAATAAATAAATAAATAAT+TGG | + | chr3_3:10007105-10007124 | None:intergenic | 5.0% |
| !! | CAATTATTTATTTATTTATT+TGG | - | chr3_3:10007103-10007122 | Msa0441600:CDS | 5.0% |
| !! | TAATCAAAATTATATAAAAT+AGG | + | chr3_3:10011220-10011239 | None:intergenic | 5.0% |
| GTTGCAGTATCAGCAATGCG+AGG | + | chr3_3:10008085-10008104 | None:intergenic | 50.0% | |
| ACGAGGACAAGATCAAGGCT+CGG | - | chr3_3:10008109-10008128 | Msa0441600:intron | 50.0% | |
| ! | GGAGAGCATGACAGACTTGA+AGG | + | chr3_3:10008145-10008164 | None:intergenic | 50.0% |
| CTAGAGTTTCCCTCAGCAAC+TGG | - | chr3_3:10008458-10008477 | Msa0441600:CDS | 50.0% | |
| AGAGTTTCCCTCAGCAACTG+GGG | - | chr3_3:10008460-10008479 | Msa0441600:CDS | 50.0% | |
| CGCTCAGGATTGTCGACAAT+TGG | + | chr3_3:10008560-10008579 | None:intergenic | 50.0% | |
| ! | ACAGTGCTATTCGCCTTTGC+AGG | + | chr3_3:10008613-10008632 | None:intergenic | 50.0% |
| AGCTCGACCTTGTAACCTCA+AGG | - | chr3_3:10008915-10008934 | Msa0441600:intron | 50.0% | |
| GCTCGACCTTGTAACCTCAA+GGG | - | chr3_3:10008916-10008935 | Msa0441600:intron | 50.0% | |
| CTCTGTCCCTTGAGGTTACA+AGG | + | chr3_3:10008925-10008944 | None:intergenic | 50.0% | |
| GAGTTGAACTCTGTCCCTTG+AGG | + | chr3_3:10008933-10008952 | None:intergenic | 50.0% | |
| ATAGGCAGGAATTCAGCAGC+AGG | + | chr3_3:10009341-10009360 | None:intergenic | 50.0% | |
| CAGCATGTCCGTCTTAGTGT+TGG | - | chr3_3:10009558-10009577 | Msa0441600:intron | 50.0% | |
| ACTAACATAGACACCGGGCA+CGG | + | chr3_3:10009586-10009605 | None:intergenic | 50.0% | |
| ACCGGTGATTGACTGGGATA+AGG | - | chr3_3:10010141-10010160 | Msa0441600:intron | 50.0% | |
| CCCTTATCCCAGTCAATCAC+CGG | + | chr3_3:10010145-10010164 | None:intergenic | 50.0% | |
| CCGGTGATTGACTGGGATAA+GGG | - | chr3_3:10010142-10010161 | Msa0441600:intron | 50.0% | |
| CTCTCTGTGTGATCCTTCAG+AGG | - | chr3_3:10010538-10010557 | Msa0441600:intron | 50.0% | |
| !! | ACAAGATCAAGGCTCGGTGC+AGG | - | chr3_3:10008115-10008134 | Msa0441600:intron | 55.0% |
| TCAAAGGCCCCAGTTGCTGA+GGG | + | chr3_3:10008470-10008489 | None:intergenic | 55.0% | |
| TTCAAAGGCCCCAGTTGCTG+AGG | + | chr3_3:10008471-10008490 | None:intergenic | 55.0% | |
| ! | TCGGACATGAAAGCACGCTC+AGG | + | chr3_3:10008575-10008594 | None:intergenic | 55.0% |
| GGACAGAGTTCAACTCCCCT+CGG | - | chr3_3:10008937-10008956 | Msa0441600:intron | 55.0% | |
| GACAGAGTTCAACTCCCCTC+GGG | - | chr3_3:10008938-10008957 | Msa0441600:intron | 55.0% | |
| GCAGGAATTCAGCAGCAGGT+TGG | + | chr3_3:10009337-10009356 | None:intergenic | 55.0% | |
| !! | GTTTCGGTGCTACACAGGCT+AGG | + | chr3_3:10009453-10009472 | None:intergenic | 55.0% |
| GCACGGCACCAACACTAAGA+CGG | + | chr3_3:10009569-10009588 | None:intergenic | 55.0% | |
| AGGTTCGACCGGTGATTGAC+TGG | - | chr3_3:10010134-10010153 | Msa0441600:intron | 55.0% | |
| GGTTCGACCGGTGATTGACT+GGG | - | chr3_3:10010135-10010154 | Msa0441600:intron | 55.0% | |
| ! | CGCGTTGCTTTCTTTAGGGG+CGG | + | chr3_3:10010513-10010532 | None:intergenic | 55.0% |
| CGCCCCTAAAGAAAGCAACG+CGG | - | chr3_3:10010511-10010530 | Msa0441600:intron | 55.0% | |
| !! | CTTAGTGTTGGTGCCGTGCC+CGG | - | chr3_3:10009570-10009589 | Msa0441600:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 10006367 | 10011253 | 10006367 | ID=Msa0441600;Name=Msa0441600 |
| chr3_3 | mRNA | 10006367 | 10011253 | 10006367 | ID=Msa0441600-mRNA-1;Parent=Msa0441600;Name=Msa0441600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=262|1|1|1|0.83|0.84|13|466|388 |
| chr3_3 | exon | 10006367 | 10006886 | 10006367 | ID=Msa0441600-mRNA-1:exon:2164;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10007061 | 10007153 | 10007061 | ID=Msa0441600-mRNA-1:exon:2163;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10007256 | 10007326 | 10007256 | ID=Msa0441600-mRNA-1:exon:2162;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10007424 | 10007493 | 10007424 | ID=Msa0441600-mRNA-1:exon:2161;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10007638 | 10007715 | 10007638 | ID=Msa0441600-mRNA-1:exon:2160;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10007878 | 10007979 | 10007878 | ID=Msa0441600-mRNA-1:exon:2159;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10008250 | 10008306 | 10008250 | ID=Msa0441600-mRNA-1:exon:2158;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10008404 | 10008529 | 10008404 | ID=Msa0441600-mRNA-1:exon:2157;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10008838 | 10008909 | 10008838 | ID=Msa0441600-mRNA-1:exon:2156;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10009022 | 10009162 | 10009022 | ID=Msa0441600-mRNA-1:exon:2155;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10009260 | 10009573 | 10009260 | ID=Msa0441600-mRNA-1:exon:2154;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10010815 | 10010886 | 10010815 | ID=Msa0441600-mRNA-1:exon:2153;Parent=Msa0441600-mRNA-1 |
| chr3_3 | exon | 10011075 | 10011253 | 10011075 | ID=Msa0441600-mRNA-1:exon:2152;Parent=Msa0441600-mRNA-1 |
| chr3_3 | five_prime_UTR | 10011075 | 10011253 | 10011075 | ID=Msa0441600-mRNA-1:five_prime_utr;Parent=Msa0441600-mRNA-1 |
| chr3_3 | five_prime_UTR | 10010815 | 10010886 | 10010815 | ID=Msa0441600-mRNA-1:five_prime_utr;Parent=Msa0441600-mRNA-1 |
| chr3_3 | five_prime_UTR | 10009563 | 10009573 | 10009563 | ID=Msa0441600-mRNA-1:five_prime_utr;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10009260 | 10009562 | 10009260 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10009022 | 10009162 | 10009022 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10008838 | 10008909 | 10008838 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10008404 | 10008529 | 10008404 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10008250 | 10008306 | 10008250 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10007878 | 10007979 | 10007878 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10007638 | 10007715 | 10007638 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10007424 | 10007493 | 10007424 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10007256 | 10007326 | 10007256 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10007061 | 10007153 | 10007061 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | CDS | 10006833 | 10006886 | 10006833 | ID=Msa0441600-mRNA-1:cds;Parent=Msa0441600-mRNA-1 |
| chr3_3 | three_prime_UTR | 10006367 | 10006832 | 10006367 | ID=Msa0441600-mRNA-1:three_prime_utr;Parent=Msa0441600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
