AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875340 MtrunA17_Chr6g0456401 97.566 493 8 1 1 493 1 489 0.0 1000
Msa0875340 MtrunA17_Chr6g0456391 97.363 493 9 1 1 493 1 489 0.0 999
Msa0875340 MtrunA17_Chr6g0456381 96.957 493 11 1 1 493 1 489 0.0 995
Msa0875340 MtrunA17_Chr7g0221391 72.233 497 128 4 1 493 1 491 0.0 750
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875340 AT3G30775.1 57.800 500 201 5 1 492 1 498 0.0 569
Msa0875340 AT3G30775.2 57.800 500 201 5 1 492 1 498 0.0 569
Msa0875340 AT5G38710.1 58.315 463 179 4 31 490 24 475 0.0 562
Msa0875340 AT5G38710.2 58.150 454 176 4 31 481 24 466 0.0 551

Find 93 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTCTTGTGGTGTTAA+TGG 0.140964 6_1:-11892573 None:intergenic
GGTTGTGATCGTAATCTTAA+AGG 0.228265 6_1:+11890374 Msa0875340:CDS
TACAAAGTTGTTGTAATCTT+TGG 0.233322 6_1:-11892614 None:intergenic
TTACGTGGCATGCTTGTTTA+TGG 0.238176 6_1:+11890326 Msa0875340:CDS
TCTTGTGGTGTTAATGGTTC+TGG 0.257780 6_1:-11892567 None:intergenic
CTGTCGTGGACGTTGGAATA+TGG 0.273143 6_1:+11890159 Msa0875340:CDS
AGTACATTGGCTGAGTCTTT+TGG 0.274273 6_1:+11892888 Msa0875340:CDS
GGACTTGATTCTGAGAAAAT+TGG 0.279493 6_1:-11892522 None:intergenic
GAAACTCTCGACAACACTTT+AGG 0.315281 6_1:-11889787 None:intergenic
GTGTTCAGCATCAACCAATA+AGG 0.319739 6_1:-11892661 None:intergenic
TGAAGCAAACATGCCCTTAT+TGG 0.322495 6_1:+11892647 Msa0875340:CDS
GAAGGATGGGAGGAGTTTAA+TGG 0.324027 6_1:-11889951 None:intergenic
GATGATAATCCAATTGTGTT+TGG 0.348930 6_1:+11892744 Msa0875340:CDS
GCAGCAAAAGCATATGAAAT+TGG 0.349585 6_1:+11893568 Msa0875340:CDS
TTTCTTCAGCTCTTCTCAAT+AGG 0.352369 6_1:-11893729 None:intergenic
TGAAGAAAATAGAGGCCTTT+TGG 0.353136 6_1:+11893744 Msa0875340:CDS
ATGGGATTTAAGTTGGTTAG+AGG 0.360764 6_1:+11892846 Msa0875340:CDS
TTGCTTGAGAAGTTTGCTAA+TGG 0.363959 6_1:+11892978 Msa0875340:CDS
GGAGGAGTTTAATGGCTTTG+TGG 0.370820 6_1:-11889943 None:intergenic
GTTAGCAAGTATATGCCATT+TGG 0.380807 6_1:+11893682 Msa0875340:CDS
GTTGTGATCGTAATCTTAAA+GGG 0.388070 6_1:+11890375 Msa0875340:CDS
TGAATTGTTCCAAACACAAT+TGG 0.392760 6_1:-11892753 None:intergenic
GACGGTTGTGGTGGTGGTGG+TGG 0.398392 6_1:-11890023 None:intergenic
TCATTTGGTTTGAGCAATGC+AGG 0.402184 6_1:+11893652 Msa0875340:CDS
TTGCTGCTGGAAAGAGTATA+AGG 0.405411 6_1:+11890285 Msa0875340:CDS
ATAGTCTCTCAGCGTCGTTT+AGG 0.405775 6_1:-11890070 None:intergenic
GAGAAGTTTGCTAATGGAAA+AGG 0.409585 6_1:+11892984 Msa0875340:CDS
ATGTCAGATGCACTTTCATT+TGG 0.412207 6_1:+11893637 Msa0875340:CDS
CAATCAAAATTGTTACAAAC+AGG 0.415519 6_1:+11890188 Msa0875340:CDS
TGGTGTGACGGTTGTGGTGG+TGG 0.427223 6_1:-11890029 None:intergenic
TTCCATGGTAAATTGAATGA+AGG 0.441489 6_1:-11892486 None:intergenic
TGTGACGGTTGTGGTGGTGG+TGG 0.448290 6_1:-11890026 None:intergenic
TCTTCAATAGTATCATGAAT+TGG 0.450449 6_1:-11892921 None:intergenic
TGTCGTGGACGTTGGAATAT+GGG 0.452589 6_1:+11890160 Msa0875340:CDS
AATTAGAAACTTACAGAAGA+TGG 0.452786 6_1:-11890434 None:intergenic
AATTCCTATGGGATTTAAGT+TGG 0.453707 6_1:+11892839 Msa0875340:CDS
GCTACACACAACATTGAATC+AGG 0.457514 6_1:+11893020 Msa0875340:CDS
GGTCGAGATAAGACGGTTGT+TGG 0.459521 6_1:-11890049 None:intergenic
GTTGTGCAAATTCAAGTTTG+TGG 0.466588 6_1:-11893606 None:intergenic
CGGCAGCGGTGGCTGAAGGA+TGG 0.474169 6_1:-11889965 None:intergenic
GGAGAAGATGCTATTGCTGC+TGG 0.477420 6_1:+11890272 Msa0875340:CDS
TGAAAATCACTTTCTTCTTG+TGG 0.479035 6_1:-11892582 None:intergenic
AATCTTGAAAGATGCAGTTA+TGG 0.482279 6_1:+11890211 Msa0875340:CDS
ACCATCTCAACTGGTCCAAA+TGG 0.482748 6_1:-11893697 None:intergenic
CTTGAATTTGCACAACTATG+TGG 0.482939 6_1:+11893613 Msa0875340:CDS
ATAAGGTCTGTTAATGAAGC+TGG 0.484228 6_1:+11890302 Msa0875340:CDS
TGTTCAGCATCAACCAATAA+GGG 0.484705 6_1:-11892660 None:intergenic
AACTTATTTGAAAGATGCTA+AGG 0.486569 6_1:+11892776 Msa0875340:CDS
AAAGCATATGAAATTGGAAT+GGG 0.486854 6_1:+11893574 Msa0875340:CDS
GGTAGAGAGTCTTGTTTCCA+TGG 0.489711 6_1:-11892501 None:intergenic
GGCAGCGGTGGCTGAAGGAT+GGG 0.493133 6_1:-11889964 None:intergenic
TGTACAGAAAAGAGCTTGGA+AGG 0.493267 6_1:+11893900 Msa0875340:intron
TAAGGCATAACCATCTCAAC+TGG 0.497185 6_1:-11893706 None:intergenic
AAGGGAGGCGACGGCAGCGG+TGG 0.516875 6_1:-11889976 None:intergenic
ATTCTTTCTAGTAATGCCAT+TGG 0.522940 6_1:-11892432 None:intergenic
GAGAAGGGAGGCGACGGCAG+CGG 0.523270 6_1:-11889979 None:intergenic
AGAAGAGCTGAAGAAAATAG+AGG 0.524857 6_1:+11893736 Msa0875340:CDS
GGAGTTTAATGGCTTTGTGG+TGG 0.525108 6_1:-11889940 None:intergenic
CATTTGGTTTGAGCAATGCA+GGG 0.525718 6_1:+11893653 Msa0875340:CDS
TCAGCTCTTCTCAATAGGTA+AGG 0.526405 6_1:-11893724 None:intergenic
CAAATCCAGAAGCAGCCAAA+AGG 0.529777 6_1:-11893759 None:intergenic
GCCATTTGGACCAGTTGAGA+TGG 0.538971 6_1:+11893696 Msa0875340:CDS
GGTTGTTGGTGTGACGGTTG+TGG 0.540727 6_1:-11890035 None:intergenic
AGGTTGTTCTCTTTCGAGAA+GGG 0.540968 6_1:-11889994 None:intergenic
TCCATGGTAAATTGAATGAA+GGG 0.543779 6_1:-11892485 None:intergenic
GCGACGGCAGCGGTGGCTGA+AGG 0.544078 6_1:-11889969 None:intergenic
AAAAGCATATGAAATTGGAA+TGG 0.545661 6_1:+11893573 Msa0875340:CDS
TATGTGAAGTAATCAATAGC+TGG 0.545894 6_1:-11892696 None:intergenic
GAATAAGTGATCTTCTAAGA+TGG 0.547341 6_1:+11892451 Msa0875340:CDS
ACCCTTCATTCAATTTACCA+TGG 0.548501 6_1:+11892484 Msa0875340:CDS
GATTTGATAGACAACTCATA+AGG 0.552477 6_1:+11893776 Msa0875340:CDS
TATCAGCGTGGACGTTGGAA+CGG 0.555619 6_1:-11890099 None:intergenic
CGTTGCATGCAAAACGGCTG+AGG 0.555771 6_1:-11890126 None:intergenic
TATAGCCGTTGCATGCAAAA+CGG 0.559507 6_1:-11890132 None:intergenic
AAGGTTGTTCTCTTTCGAGA+AGG 0.560901 6_1:-11889995 None:intergenic
CATATTCCAACGTCCACGAC+AGG 0.571109 6_1:-11890158 None:intergenic
TCTTTCGAGAAGGGAGGCGA+CGG 0.578179 6_1:-11889985 None:intergenic
GTTAATGAAGCTGGCTTACG+TGG 0.581537 6_1:+11890311 Msa0875340:CDS
AATCACTGCAATATGTCCAA+TGG 0.585286 6_1:+11892416 Msa0875340:CDS
ATAGGACCTGTCGTGGACGT+TGG 0.590338 6_1:+11890152 Msa0875340:CDS
AGCGGTGGCTGAAGGATGGG+AGG 0.592747 6_1:-11889961 None:intergenic
TGTTGGTGTGACGGTTGTGG+TGG 0.605574 6_1:-11890032 None:intergenic
CTAACCAACTTAAATCCCAT+AGG 0.606330 6_1:-11892843 None:intergenic
TTGTTCTCTTTCGAGAAGGG+AGG 0.606843 6_1:-11889991 None:intergenic
TCGTTTAGGTCGAGATAAGA+CGG 0.607879 6_1:-11890056 None:intergenic
GATCTTATCAGCGTGGACGT+TGG 0.612929 6_1:-11890104 None:intergenic
GAAGATGCACATGATAATGA+TGG 0.618481 6_1:+11890353 Msa0875340:CDS
AAGTGATTTGCTAACATCAA+CGG 0.622647 6_1:-11890408 None:intergenic
TATGTCTACAGAAAGTACAT+TGG 0.622655 6_1:+11892875 Msa0875340:CDS
TAAGACGGTTGTTGGTGTGA+CGG 0.642129 6_1:-11890041 None:intergenic
TAGAAACTTACAGAAGATGG+AGG 0.662988 6_1:-11890431 None:intergenic
ACAGAAAAGAGCTTGGAAGG+AGG 0.680297 6_1:+11893903 Msa0875340:intron
GGCTGAGGATCTTATCAGCG+TGG 0.691125 6_1:-11890111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTATTATTA+TGG - chr6_1:11890933-11890952 None:intergenic 0.0%
!!! TAATAATAAATTAAATATTT+TGG + chr6_1:11891737-11891756 Msa0875340:intron 0.0%
!!! TTATATTTTATACATAATGT+TGG + chr6_1:11891932-11891951 Msa0875340:intron 10.0%
!!! ACATTTTCTTAAAATATTAT+CGG - chr6_1:11893171-11893190 None:intergenic 10.0%
!!! ACATTTTCTTAAAATATTAT+CGG - chr6_1:11893171-11893190 None:intergenic 10.0%
!!! AAATGAATTTTGAATTATTA+TGG + chr6_1:11894068-11894087 Msa0875340:three_prime_UTR 10.0%
!!! TTTTATTTAAAGAAGAAAAG+AGG + chr6_1:11890548-11890567 Msa0875340:intron 15.0%
!!! CTATTTTTTAAAAGCAAAAT+TGG + chr6_1:11890694-11890713 Msa0875340:intron 15.0%
!!! TGAAATGTGTTTTAATATAA+AGG + chr6_1:11890888-11890907 Msa0875340:intron 15.0%
!!! TACTTTTCTAATTTTTTATG+TGG + chr6_1:11891050-11891069 Msa0875340:intron 15.0%
!! TGTCTCATATTATATATTAT+TGG + chr6_1:11891531-11891550 Msa0875340:intron 15.0%
!!! TTGTACATTTTAATATGAAT+TGG - chr6_1:11892223-11892242 None:intergenic 15.0%
!!! ATTGATTTTTTTTATGTGAT+AGG + chr6_1:11892374-11892393 Msa0875340:intron 15.0%
!! ATTAGATATTTACATTCATT+AGG + chr6_1:11893048-11893067 Msa0875340:intron 15.0%
!! TTAGATATTTACATTCATTA+GGG + chr6_1:11893049-11893068 Msa0875340:intron 15.0%
!! TGTCTCAAAAATAATTAAAA+AGG - chr6_1:11893827-11893846 None:intergenic 15.0%
!!! AATTATTATGGTATTTTTGT+TGG + chr6_1:11894080-11894099 Msa0875340:three_prime_UTR 15.0%
!!! CAAATTTTCTTGTTTTTGAA+TGG + chr6_1:11889869-11889888 Msa0875340:exon 20.0%
!!! AGTATTAATTTTCATGATCA+TGG + chr6_1:11890477-11890496 Msa0875340:intron 20.0%
!! ACTTTAAATAAAGATTGAAG+AGG + chr6_1:11890830-11890849 Msa0875340:intron 20.0%
!! CATTTCACACAAAAAATATT+GGG - chr6_1:11890875-11890894 None:intergenic 20.0%
!! ACATTTCACACAAAAAATAT+TGG - chr6_1:11890876-11890895 None:intergenic 20.0%
!! TATTATTATGGTGTAAATGA+GGG - chr6_1:11890921-11890940 None:intergenic 20.0%
!! TTATTATTATGGTGTAAATG+AGG - chr6_1:11890922-11890941 None:intergenic 20.0%
!! TCATTATTTCCTTAACTATT+GGG - chr6_1:11891082-11891101 None:intergenic 20.0%
!! ATCATTATTTCCTTAACTAT+TGG - chr6_1:11891083-11891102 None:intergenic 20.0%
!! TAATAATACAAAGTAGTTGA+TGG - chr6_1:11891194-11891213 None:intergenic 20.0%
!!! TTTTTAAGTTGCAAAAATCT+TGG + chr6_1:11891483-11891502 Msa0875340:intron 20.0%
!!! AAATTTGAGTTTGGTATTTT+TGG + chr6_1:11891630-11891649 Msa0875340:intron 20.0%
!!! AGTGTTTAGAAATTAGATTT+TGG + chr6_1:11892014-11892033 Msa0875340:intron 20.0%
!!! GAAATTAGATTTTGGTATTT+TGG + chr6_1:11892022-11892041 Msa0875340:intron 20.0%
!! AATAAAACTCTAGTAAGAAA+TGG - chr6_1:11892084-11892103 None:intergenic 20.0%
!!! TCAAAGTGTTTATACTAAAT+TGG + chr6_1:11892114-11892133 Msa0875340:intron 20.0%
!! TGTCAAATGCAAAAAAATTA+TGG - chr6_1:11892156-11892175 None:intergenic 20.0%
!! ATAAATGTAACCACATATAT+CGG + chr6_1:11893393-11893412 Msa0875340:intron 20.0%
!! AGATACATTAATTGAAATCT+TGG - chr6_1:11893507-11893526 None:intergenic 20.0%
!!! TTGAATTTTTTTTGTTGTGT+AGG + chr6_1:11893535-11893554 Msa0875340:intron 20.0%
!!! TGAATTTTTTTTGTTGTGTA+GGG + chr6_1:11893536-11893555 Msa0875340:intron 20.0%
!!! TTTTTCTCATACTGATTTTT+TGG + chr6_1:11893867-11893886 Msa0875340:intron 20.0%
! CAATCAAAATTGTTACAAAC+AGG + chr6_1:11890188-11890207 Msa0875340:CDS 25.0%
!! TTTTATGAACATTTTTGTGC+TGG + chr6_1:11890251-11890270 Msa0875340:CDS 25.0%
! AATTAGAAACTTACAGAAGA+TGG - chr6_1:11890437-11890456 None:intergenic 25.0%
!! TTAAAGAAGAAAAGAGGTTT+TGG + chr6_1:11890554-11890573 Msa0875340:intron 25.0%
!!! AGGTTTTGGTCAAATTAATT+TGG + chr6_1:11890568-11890587 Msa0875340:intron 25.0%
! CATTATTTCCTTAACTATTG+GGG - chr6_1:11891081-11891100 None:intergenic 25.0%
! TGTATGTCTTGAAAAACATA+AGG + chr6_1:11891108-11891127 Msa0875340:intron 25.0%
!!! AGTTTGGTATTTTTGGATAA+GGG + chr6_1:11891637-11891656 Msa0875340:intron 25.0%
! ATAAGGGTTAATCACTAAAT+TGG + chr6_1:11891653-11891672 Msa0875340:intron 25.0%
! ACCATTTCTAATGTAATTAG+AGG + chr6_1:11891682-11891701 Msa0875340:intron 25.0%
! ACCTCTAATTACATTAGAAA+TGG - chr6_1:11891686-11891705 None:intergenic 25.0%
!!! TGTTACTGTTTTAGACAAAA+TGG + chr6_1:11891834-11891853 Msa0875340:intron 25.0%
! AATAAAGCTCATGTTAGAAA+TGG - chr6_1:11891884-11891903 None:intergenic 25.0%
!!! ATTTTGGTATTTTGGACAAA+AGG + chr6_1:11892030-11892049 Msa0875340:intron 25.0%
!!! TTTTGGTATTTTGGACAAAA+GGG + chr6_1:11892031-11892050 Msa0875340:intron 25.0%
!!! TTTTTTGTAGTGTGGTATAA+TGG - chr6_1:11892546-11892565 None:intergenic 25.0%
! TACAAAGTTGTTGTAATCTT+TGG - chr6_1:11892617-11892636 None:intergenic 25.0%
! AACTTATTTGAAAGATGCTA+AGG + chr6_1:11892776-11892795 Msa0875340:CDS 25.0%
! TGAAAAAATTGGAATTCCTA+TGG + chr6_1:11892827-11892846 Msa0875340:CDS 25.0%
! GAAAAAATTGGAATTCCTAT+GGG + chr6_1:11892828-11892847 Msa0875340:CDS 25.0%
! TCTTCAATAGTATCATGAAT+TGG - chr6_1:11892924-11892943 None:intergenic 25.0%
! GATTGACACTTCATATTAAT+GGG - chr6_1:11893290-11893309 None:intergenic 25.0%
! AGATTGACACTTCATATTAA+TGG - chr6_1:11893291-11893310 None:intergenic 25.0%
! GCACATATATTTCAGATTTA+AGG - chr6_1:11893455-11893474 None:intergenic 25.0%
!! AAAAGCATATGAAATTGGAA+TGG + chr6_1:11893573-11893592 Msa0875340:CDS 25.0%
! AAAGCATATGAAATTGGAAT+GGG + chr6_1:11893574-11893593 Msa0875340:CDS 25.0%
!! ATTTTTGTGCTTATTACCTT+TGG + chr6_1:11894120-11894139 Msa0875340:three_prime_UTR 25.0%
!! TTTTTGTGCTTATTACCTTT+GGG + chr6_1:11894121-11894140 Msa0875340:three_prime_UTR 25.0%
!!! GGTTTTTTTACACGTGATTT+TGG - chr6_1:11889769-11889788 None:intergenic 30.0%
!! GATTCTTGATGATCTTTTGT+GGG - chr6_1:11889908-11889927 None:intergenic 30.0%
!! AGATTCTTGATGATCTTTTG+TGG - chr6_1:11889909-11889928 None:intergenic 30.0%
AATCTTGAAAGATGCAGTTA+TGG + chr6_1:11890211-11890230 Msa0875340:CDS 30.0%
GTTGTGATCGTAATCTTAAA+GGG + chr6_1:11890375-11890394 Msa0875340:CDS 30.0%
!! AAGTGATTTGCTAACATCAA+CGG - chr6_1:11890411-11890430 None:intergenic 30.0%
GCACATGTTAAAACAAGTAT+TGG + chr6_1:11891130-11891149 Msa0875340:intron 30.0%
!! TTTCTATTTCTGGAAGGAAT+TGG - chr6_1:11891170-11891189 None:intergenic 30.0%
! AGCGTTTAGAAATTTGAGTT+TGG + chr6_1:11891621-11891640 Msa0875340:intron 30.0%
!!! GAGTTTGGTATTTTTGGATA+AGG + chr6_1:11891636-11891655 Msa0875340:intron 30.0%
TGGCATTCTGTCTTAAAAAT+TGG + chr6_1:11891790-11891809 Msa0875340:intron 30.0%
GTTGGCATTGTAACAAAAAT+TGG + chr6_1:11891986-11892005 Msa0875340:intron 30.0%
! ATTCTTTCTAGTAATGCCAT+TGG - chr6_1:11892435-11892454 None:intergenic 30.0%
! GAATAAGTGATCTTCTAAGA+TGG + chr6_1:11892451-11892470 Msa0875340:CDS 30.0%
TCCATGGTAAATTGAATGAA+GGG - chr6_1:11892488-11892507 None:intergenic 30.0%
TTCCATGGTAAATTGAATGA+AGG - chr6_1:11892489-11892508 None:intergenic 30.0%
TGAAAATCACTTTCTTCTTG+TGG - chr6_1:11892585-11892604 None:intergenic 30.0%
TATGTGAAGTAATCAATAGC+TGG - chr6_1:11892699-11892718 None:intergenic 30.0%
GATGATAATCCAATTGTGTT+TGG + chr6_1:11892744-11892763 Msa0875340:CDS 30.0%
TGAATTGTTCCAAACACAAT+TGG - chr6_1:11892756-11892775 None:intergenic 30.0%
AATTCCTATGGGATTTAAGT+TGG + chr6_1:11892839-11892858 Msa0875340:CDS 30.0%
! TATGTCTACAGAAAGTACAT+TGG + chr6_1:11892875-11892894 Msa0875340:CDS 30.0%
TCAGATGTTCATATATGTGT+CGG - chr6_1:11893135-11893154 None:intergenic 30.0%
!! TTTTTGTTGTGTAGGGAAAT+TGG + chr6_1:11893543-11893562 Msa0875340:intron 30.0%
GATTTGATAGACAACTCATA+AGG + chr6_1:11893776-11893795 Msa0875340:CDS 30.0%
! ATTTTGTACAGAAAAGAGCT+TGG + chr6_1:11893896-11893915 Msa0875340:intron 30.0%
ATAAGGTCTGTTAATGAAGC+TGG + chr6_1:11890302-11890321 Msa0875340:CDS 35.0%
! GAAGATGCACATGATAATGA+TGG + chr6_1:11890353-11890372 Msa0875340:CDS 35.0%
GGTTGTGATCGTAATCTTAA+AGG + chr6_1:11890374-11890393 Msa0875340:CDS 35.0%
TAGAAACTTACAGAAGATGG+AGG - chr6_1:11890434-11890453 None:intergenic 35.0%
TTTGGTCTAATAATGTAGCG+TGG + chr6_1:11890586-11890605 Msa0875340:intron 35.0%
!! AGTTGATGGCTTTCTATTTC+TGG - chr6_1:11891180-11891199 None:intergenic 35.0%
! TTAAACTAGTTTGTGCCTCA+TGG + chr6_1:11891255-11891274 Msa0875340:intron 35.0%
!! ACGTGTGTGTTTTTATTGTG+AGG + chr6_1:11891316-11891335 Msa0875340:intron 35.0%
GTGATGAGTATGAATTGAGT+TGG + chr6_1:11891367-11891386 Msa0875340:intron 35.0%
ACATTGTACTTCAACTAGGT+GGG - chr6_1:11891767-11891786 None:intergenic 35.0%
AACCACATTGTACTTCAACT+AGG - chr6_1:11891771-11891790 None:intergenic 35.0%
TAGTTGAAGTACAATGTGGT+TGG + chr6_1:11891770-11891789 Msa0875340:intron 35.0%
TCAAAAATCGAATTGCGTGA+AGG - chr6_1:11892322-11892341 None:intergenic 35.0%
!! ACGCAATTCGATTTTTGAAG+TGG + chr6_1:11892324-11892343 Msa0875340:intron 35.0%
AATCACTGCAATATGTCCAA+TGG + chr6_1:11892416-11892435 Msa0875340:CDS 35.0%
ACCCTTCATTCAATTTACCA+TGG + chr6_1:11892484-11892503 Msa0875340:CDS 35.0%
! GGACTTGATTCTGAGAAAAT+TGG - chr6_1:11892525-11892544 None:intergenic 35.0%
!!! GTTCTGGTTTTTTTGTAGTG+TGG - chr6_1:11892554-11892573 None:intergenic 35.0%
! CTTTCTTCTTGTGGTGTTAA+TGG - chr6_1:11892576-11892595 None:intergenic 35.0%
TGTTCAGCATCAACCAATAA+GGG - chr6_1:11892663-11892682 None:intergenic 35.0%
ACACAAGCTGCTGAAAAAAT+TGG + chr6_1:11892816-11892835 Msa0875340:CDS 35.0%
CTAACCAACTTAAATCCCAT+AGG - chr6_1:11892846-11892865 None:intergenic 35.0%
!! ATGGGATTTAAGTTGGTTAG+AGG + chr6_1:11892846-11892865 Msa0875340:CDS 35.0%
!! TTGCTTGAGAAGTTTGCTAA+TGG + chr6_1:11892978-11892997 Msa0875340:CDS 35.0%
!! GAGAAGTTTGCTAATGGAAA+AGG + chr6_1:11892984-11893003 Msa0875340:CDS 35.0%
AAGTCTGATTCCGATATATG+TGG - chr6_1:11893406-11893425 None:intergenic 35.0%
! GCAGCAAAAGCATATGAAAT+TGG + chr6_1:11893568-11893587 Msa0875340:CDS 35.0%
! GTTGTGCAAATTCAAGTTTG+TGG - chr6_1:11893609-11893628 None:intergenic 35.0%
CTTGAATTTGCACAACTATG+TGG + chr6_1:11893613-11893632 Msa0875340:CDS 35.0%
ATGTCAGATGCACTTTCATT+TGG + chr6_1:11893637-11893656 Msa0875340:CDS 35.0%
GTTAGCAAGTATATGCCATT+TGG + chr6_1:11893682-11893701 Msa0875340:CDS 35.0%
TTTCTTCAGCTCTTCTCAAT+AGG - chr6_1:11893732-11893751 None:intergenic 35.0%
AGAAGAGCTGAAGAAAATAG+AGG + chr6_1:11893736-11893755 Msa0875340:CDS 35.0%
! TGAAGAAAATAGAGGCCTTT+TGG + chr6_1:11893744-11893763 Msa0875340:CDS 35.0%
GAAACTCTCGACAACACTTT+AGG - chr6_1:11889790-11889809 None:intergenic 40.0%
! TTTTTGAATGGCAACTCGTG+TGG + chr6_1:11889881-11889900 Msa0875340:exon 40.0%
!!! GCTTTGTGGTGGTTTTGAAA+CGG - chr6_1:11889932-11889951 None:intergenic 40.0%
AGGTTGTTCTCTTTCGAGAA+GGG - chr6_1:11889997-11890016 None:intergenic 40.0%
AAGGTTGTTCTCTTTCGAGA+AGG - chr6_1:11889998-11890017 None:intergenic 40.0%
TCGTTTAGGTCGAGATAAGA+CGG - chr6_1:11890059-11890078 None:intergenic 40.0%
TATAGCCGTTGCATGCAAAA+CGG - chr6_1:11890135-11890154 None:intergenic 40.0%
! TTGCTGCTGGAAAGAGTATA+AGG + chr6_1:11890285-11890304 Msa0875340:CDS 40.0%
TTACGTGGCATGCTTGTTTA+TGG + chr6_1:11890326-11890345 Msa0875340:CDS 40.0%
!! GATGGCTTTCTATTTCTGGA+AGG - chr6_1:11891176-11891195 None:intergenic 40.0%
! ATGGTTTAGTTGTGGGTTGT+GGG + chr6_1:11891274-11891293 Msa0875340:intron 40.0%
AGAAGTAGCATGACTTGAAC+TGG - chr6_1:11891446-11891465 None:intergenic 40.0%
TCTTGGAATCATGTGACAGA+CGG + chr6_1:11891500-11891519 Msa0875340:intron 40.0%
ACATTGTCCTTAAGCTAGGT+GGG - chr6_1:11891558-11891577 None:intergenic 40.0%
AACCACATTGTCCTTAAGCT+AGG - chr6_1:11891562-11891581 None:intergenic 40.0%
TAGCTTAAGGACAATGTGGT+TGG + chr6_1:11891561-11891580 Msa0875340:intron 40.0%
GAGACTGAGTCATATATCGT+TGG + chr6_1:11891593-11891612 Msa0875340:intron 40.0%
ATTGTACTTCAACTAGGTGG+GGG - chr6_1:11891765-11891784 None:intergenic 40.0%
CATTGTACTTCAACTAGGTG+GGG - chr6_1:11891766-11891785 None:intergenic 40.0%
CACATTGTACTTCAACTAGG+TGG - chr6_1:11891768-11891787 None:intergenic 40.0%
CACCTAGTTGAAGTACAATG+TGG + chr6_1:11891766-11891785 Msa0875340:intron 40.0%
ACATTGTACATCAGCTAGGT+GGG - chr6_1:11891965-11891984 None:intergenic 40.0%
AACCACATTGTACATCAGCT+AGG - chr6_1:11891969-11891988 None:intergenic 40.0%
TAGCTGATGTACAATGTGGT+TGG + chr6_1:11891968-11891987 Msa0875340:intron 40.0%
GGGTTCATTAGTACGTAGTT+TGG + chr6_1:11892051-11892070 Msa0875340:intron 40.0%
AACAACACGTTCGTACTCAT+TGG + chr6_1:11892186-11892205 Msa0875340:intron 40.0%
AAAATCGAATTGCGTGAAGG+TGG - chr6_1:11892319-11892338 None:intergenic 40.0%
! TCTTGTGGTGTTAATGGTTC+TGG - chr6_1:11892570-11892589 None:intergenic 40.0%
TGAAGCAAACATGCCCTTAT+TGG + chr6_1:11892647-11892666 Msa0875340:CDS 40.0%
GTGTTCAGCATCAACCAATA+AGG - chr6_1:11892664-11892683 None:intergenic 40.0%
!! AGTACATTGGCTGAGTCTTT+TGG + chr6_1:11892888-11892907 Msa0875340:CDS 40.0%
GCTACACACAACATTGAATC+AGG + chr6_1:11893020-11893039 Msa0875340:CDS 40.0%
! TTTCAGATTTAAGGCGTGTC+TGG - chr6_1:11893446-11893465 None:intergenic 40.0%
!! TCATTTGGTTTGAGCAATGC+AGG + chr6_1:11893652-11893671 Msa0875340:CDS 40.0%
!! CATTTGGTTTGAGCAATGCA+GGG + chr6_1:11893653-11893672 Msa0875340:CDS 40.0%
TAAGGCATAACCATCTCAAC+TGG - chr6_1:11893709-11893728 None:intergenic 40.0%
TCAGCTCTTCTCAATAGGTA+AGG - chr6_1:11893727-11893746 None:intergenic 40.0%
TGTACAGAAAAGAGCTTGGA+AGG + chr6_1:11893900-11893919 Msa0875340:intron 40.0%
!! TCACTTTTATATTGTGGGGG+CGG - chr6_1:11894153-11894172 None:intergenic 40.0%
!! GGAGTTTAATGGCTTTGTGG+TGG - chr6_1:11889943-11889962 None:intergenic 45.0%
! GGAGGAGTTTAATGGCTTTG+TGG - chr6_1:11889946-11889965 None:intergenic 45.0%
GAAGGATGGGAGGAGTTTAA+TGG - chr6_1:11889954-11889973 None:intergenic 45.0%
TTGTTCTCTTTCGAGAAGGG+AGG - chr6_1:11889994-11890013 None:intergenic 45.0%
TAAGACGGTTGTTGGTGTGA+CGG - chr6_1:11890044-11890063 None:intergenic 45.0%
ATAGTCTCTCAGCGTCGTTT+AGG - chr6_1:11890073-11890092 None:intergenic 45.0%
! GTTTTGCATGCAACGGCTAT+AGG + chr6_1:11890134-11890153 Msa0875340:CDS 45.0%
TGTCGTGGACGTTGGAATAT+GGG + chr6_1:11890160-11890179 Msa0875340:CDS 45.0%
! GTTAATGAAGCTGGCTTACG+TGG + chr6_1:11890311-11890330 Msa0875340:CDS 45.0%
TGGACTCACCCCAATAGTTA+AGG + chr6_1:11891070-11891089 Msa0875340:intron 45.0%
TGTGCCTCATGGTTTAGTTG+TGG + chr6_1:11891266-11891285 Msa0875340:intron 45.0%
GTGCCTCATGGTTTAGTTGT+GGG + chr6_1:11891267-11891286 Msa0875340:intron 45.0%
CAACCCACAACTAAACCATG+AGG - chr6_1:11891273-11891292 None:intergenic 45.0%
! CATGGTTTAGTTGTGGGTTG+TGG + chr6_1:11891273-11891292 Msa0875340:intron 45.0%
! TGGTTTAGTTGTGGGTTGTG+GGG + chr6_1:11891275-11891294 Msa0875340:intron 45.0%
TATTGGTCCCACCTAGCTTA+AGG + chr6_1:11891548-11891567 Msa0875340:intron 45.0%
CACATTGTCCTTAAGCTAGG+TGG - chr6_1:11891559-11891578 None:intergenic 45.0%
CACCTAGCTTAAGGACAATG+TGG + chr6_1:11891557-11891576 Msa0875340:intron 45.0%
TTGTACTTCAACTAGGTGGG+GGG - chr6_1:11891764-11891783 None:intergenic 45.0%
CACATTGTACATCAGCTAGG+TGG - chr6_1:11891966-11891985 None:intergenic 45.0%
CACCTAGCTGATGTACAATG+TGG + chr6_1:11891964-11891983 Msa0875340:intron 45.0%
CGTTCGTACTCATTGGATCA+AGG + chr6_1:11892193-11892212 Msa0875340:intron 45.0%
TCATGCAGTCAGCACATTCA+TGG - chr6_1:11892283-11892302 None:intergenic 45.0%
!! GGTAGAGAGTCTTGTTTCCA+TGG - chr6_1:11892504-11892523 None:intergenic 45.0%
! TGGCTGAGTCTTTTGGATCT+AGG + chr6_1:11892895-11892914 Msa0875340:CDS 45.0%
GTGTTTGTGTTGTCGCATGT+CGG + chr6_1:11893256-11893275 Msa0875340:intron 45.0%
TGACACTGACACGTAGACAA+TGG + chr6_1:11893345-11893364 Msa0875340:intron 45.0%
ACCATCTCAACTGGTCCAAA+TGG - chr6_1:11893700-11893719 None:intergenic 45.0%
CAAATCCAGAAGCAGCCAAA+AGG - chr6_1:11893762-11893781 None:intergenic 45.0%
ACAGAAAAGAGCTTGGAAGG+AGG + chr6_1:11893903-11893922 Msa0875340:intron 45.0%
!! AATAATAATAATAATATAAG+AGG + chr6_1:11891012-11891031 Msa0875340:intron 5.0%
!! TAAAAAATATAAAATTGAAA+AGG - chr6_1:11893083-11893102 None:intergenic 5.0%
GGTCGAGATAAGACGGTTGT+TGG - chr6_1:11890052-11890071 None:intergenic 50.0%
TATCAGCGTGGACGTTGGAA+CGG - chr6_1:11890102-11890121 None:intergenic 50.0%
GATCTTATCAGCGTGGACGT+TGG - chr6_1:11890107-11890126 None:intergenic 50.0%
!! CTCAGCCGTTTTGCATGCAA+CGG + chr6_1:11890127-11890146 Msa0875340:CDS 50.0%
CATATTCCAACGTCCACGAC+AGG - chr6_1:11890161-11890180 None:intergenic 50.0%
CTGTCGTGGACGTTGGAATA+TGG + chr6_1:11890159-11890178 Msa0875340:CDS 50.0%
GGAGAAGATGCTATTGCTGC+TGG + chr6_1:11890272-11890291 Msa0875340:CDS 50.0%
TACATCAGCTAGGTGGGAGT+GGG - chr6_1:11891959-11891978 None:intergenic 50.0%
GTCAGCACATTCATGGCAGT+TGG - chr6_1:11892276-11892295 None:intergenic 50.0%
GTGTTTGTGTCGTCGCATGT+TGG + chr6_1:11893199-11893218 Msa0875340:intron 50.0%
CGTGTCTGGTTGATCGATGT+GGG - chr6_1:11893432-11893451 None:intergenic 50.0%
GCCATTTGGACCAGTTGAGA+TGG + chr6_1:11893696-11893715 Msa0875340:CDS 50.0%
TCTTTCGAGAAGGGAGGCGA+CGG - chr6_1:11889988-11890007 None:intergenic 55.0%
TGTTGGTGTGACGGTTGTGG+TGG - chr6_1:11890035-11890054 None:intergenic 55.0%
GGTTGTTGGTGTGACGGTTG+TGG - chr6_1:11890038-11890057 None:intergenic 55.0%
GGCTGAGGATCTTATCAGCG+TGG - chr6_1:11890114-11890133 None:intergenic 55.0%
CGTTGCATGCAAAACGGCTG+AGG - chr6_1:11890129-11890148 None:intergenic 55.0%
AACGGCTATAGGACCTGTCG+TGG + chr6_1:11890145-11890164 Msa0875340:CDS 55.0%
ATAGGACCTGTCGTGGACGT+TGG + chr6_1:11890152-11890171 Msa0875340:CDS 55.0%
GTACATCAGCTAGGTGGGAG+TGG - chr6_1:11891960-11891979 None:intergenic 55.0%
GCGTGTCTGGTTGATCGATG+TGG - chr6_1:11893433-11893452 None:intergenic 55.0%
!! AGAGGCCTTTTGGCTGCTTC+TGG + chr6_1:11893754-11893773 Msa0875340:CDS 55.0%
!! TGTGACGGTTGTGGTGGTGG+TGG - chr6_1:11890029-11890048 None:intergenic 60.0%
TGGTGTGACGGTTGTGGTGG+TGG - chr6_1:11890032-11890051 None:intergenic 60.0%
AGCGGTGGCTGAAGGATGGG+AGG - chr6_1:11889964-11889983 None:intergenic 65.0%
GGCAGCGGTGGCTGAAGGAT+GGG - chr6_1:11889967-11889986 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGAGA+AGG - chr6_1:11890017-11890036 None:intergenic 65.0%
!! GGTTGTGGTGGTGGTGGTGG+TGG - chr6_1:11890023-11890042 None:intergenic 65.0%
!! GACGGTTGTGGTGGTGGTGG+TGG - chr6_1:11890026-11890045 None:intergenic 65.0%
TGGGGGCGGCAGATTCCCAA+AGG - chr6_1:11894139-11894158 None:intergenic 65.0%
CGGCAGCGGTGGCTGAAGGA+TGG - chr6_1:11889968-11889987 None:intergenic 70.0%
GAGAAGGGAGGCGACGGCAG+CGG - chr6_1:11889982-11890001 None:intergenic 70.0%
GCGACGGCAGCGGTGGCTGA+AGG - chr6_1:11889972-11889991 None:intergenic 75.0%
AAGGGAGGCGACGGCAGCGG+TGG - chr6_1:11889979-11889998 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 11889752 11894173 11889752 ID=Msa0875340;Name=Msa0875340
chr6_1 mRNA 11889752 11894173 11889752 ID=Msa0875340-mRNA-1;Parent=Msa0875340;Name=Msa0875340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=136|1|1|1|1|1|4|227|493
chr6_1 exon 11889752 11890442 11889752 ID=Msa0875340-mRNA-1:exon:3597;Parent=Msa0875340-mRNA-1
chr6_1 exon 11892396 11893041 11892396 ID=Msa0875340-mRNA-1:exon:3598;Parent=Msa0875340-mRNA-1
chr6_1 exon 11893557 11893797 11893557 ID=Msa0875340-mRNA-1:exon:3599;Parent=Msa0875340-mRNA-1
chr6_1 exon 11893907 11894173 11893907 ID=Msa0875340-mRNA-1:exon:3600;Parent=Msa0875340-mRNA-1
chr6_1 five_prime_UTR 11889752 11889887 11889752 ID=Msa0875340-mRNA-1:five_prime_utr;Parent=Msa0875340-mRNA-1
chr6_1 CDS 11889888 11890442 11889888 ID=Msa0875340-mRNA-1:cds;Parent=Msa0875340-mRNA-1
chr6_1 CDS 11892396 11893041 11892396 ID=Msa0875340-mRNA-1:cds;Parent=Msa0875340-mRNA-1
chr6_1 CDS 11893557 11893797 11893557 ID=Msa0875340-mRNA-1:cds;Parent=Msa0875340-mRNA-1
chr6_1 CDS 11893907 11893946 11893907 ID=Msa0875340-mRNA-1:cds;Parent=Msa0875340-mRNA-1
chr6_1 three_prime_UTR 11893947 11894173 11893947 ID=Msa0875340-mRNA-1:three_prime_utr;Parent=Msa0875340-mRNA-1
Gene Sequence

>Msa0875340

ATGGCAACTCGTGTGGTCCCACAAAAGATCATCAAGAATCTCCGTTTCAAAACCACCACAAAGCCATTAAACTCCTCCCATCCTTCAGCCACCGCTGCCGTCGCCTCCCTTCTCGAAAGAGAACAACCTTCTCCACCACCACCACCACCACAACCGTCACACCAACAACCGTCTTATCTCGACCTAAACGACGCTGAGAGACTATTCTCAGCCGTTCCAACGTCCACGCTGATAAGATCCTCAGCCGTTTTGCATGCAACGGCTATAGGACCTGTCGTGGACGTTGGAATATGGGCTATGCAATCAAAATTGTTACAAACAGGAATCTTGAAAGATGCAGTTATGGCAGTTACAAAGAGAACATTTTATGAACATTTTTGTGCTGGAGAAGATGCTATTGCTGCTGGAAAGAGTATAAGGTCTGTTAATGAAGCTGGCTTACGTGGCATGCTTGTTTATGGTGTTGAAGATGCACATGATAATGATGGTTGTGATCGTAATCTTAAAGGGTTTCTTCATACCGTTGATGTTAGCAAATCACTTCCTCCATCTTCTGTGAGTTTTGTGATTGTGAAAATCACTGCAATATGTCCAATGGCATTACTAGAAAGAATAAGTGATCTTCTAAGATGGCAACAAAAAGACCCTTCATTCAATTTACCATGGAAACAAGACTCTCTACCAATTTTCTCAGAATCAAGTCCATTATACCACACTACAAAAAAACCAGAACCATTAACACCACAAGAAGAAAGTGATTTTCAACTAGCAAACCAAAGATTACAACAACTTTGTAAAAAATGTGTTGAAGCAAACATGCCCTTATTGGTTGATGCTGAACACACTACTGTTCAACCAGCTATTGATTACTTCACATACTCTTCAGCAATTATGCATAATAAAGATGATAATCCAATTGTGTTTGGAACAATTCAAACTTATTTGAAAGATGCTAAGGAGAGATTGTTTCTTGCAACACAAGCTGCTGAAAAAATTGGAATTCCTATGGGATTTAAGTTGGTTAGAGGTGCTTATATGTCTACAGAAAGTACATTGGCTGAGTCTTTTGGATCTAGGTCACCAATTCATGATACTATTGAAGATACACATAATTGCTTCAATGATTGTTCATCTTATTTGCTTGAGAAGTTTGCTAATGGAAAAGGATCTGTTGTTCTTGCTACACACAACATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAAATTGGAATGGGAAAAGTGAACCACAAACTTGAATTTGCACAACTATGTGGAATGTCAGATGCACTTTCATTTGGTTTGAGCAATGCAGGGTTTAGAGTTAGCAAGTATATGCCATTTGGACCAGTTGAGATGGTTATGCCTTACCTATTGAGAAGAGCTGAAGAAAATAGAGGCCTTTTGGCTGCTTCTGGATTTGATAGACAACTCATAAGAAAAGAGCTTGGAAGGAGGCTTAAAGCTGCAATATTTTAA

Protein sequence

>Msa0875340

MATRVVPQKIIKNLRFKTTTKPLNSSHPSATAAVASLLEREQPSPPPPPPQPSHQQPSYLDLNDAERLFSAVPTSTLIRSSAVLHATAIGPVVDVGIWAMQSKLLQTGILKDAVMAVTKRTFYEHFCAGEDAIAAGKSIRSVNEAGLRGMLVYGVEDAHDNDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMALLERISDLLRWQQKDPSFNLPWKQDSLPIFSESSPLYHTTKKPEPLTPQEESDFQLANQRLQQLCKKCVEANMPLLVDAEHTTVQPAIDYFTYSSAIMHNKDDNPIVFGTIQTYLKDAKERLFLATQAAEKIGIPMGFKLVRGAYMSTESTLAESFGSRSPIHDTIEDTHNCFNDCSSYLLEKFANGKGSVVLATHNIESGKLAAAKAYEIGMGKVNHKLEFAQLCGMSDALSFGLSNAGFRVSKYMPFGPVEMVMPYLLRRAEENRGLLAASGFDRQLIRKELGRRLKAAIF*