AlfalfaGEDB | Msa0403290

M. sativa cultivar zhongmu-4 / Msa0403290

KEGG: K01640
GO: GO:0003674 GO:0003824 GO:0004419 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016829 GO:0016830 GO:0016833 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
PFAM: PF00682.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403290	XP_003599680.1	97.921	433	9	0	1	433	1	433	0.0	877

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403290	sp\|O81027\|HMGCL_ARATH	72.350	434	118	2	1	433	36	468	0.0	646

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403290	G7IZR1	97.921	433	9	0	1	433	1	433	0.0	877

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0350070	Msa0403290	0.804020	2.639823e-49	-8.615850e-47
Msa0357050	Msa0403290	0.872281	3.587613e-67	-8.615850e-47
Msa0396640	Msa0403290	0.802374	5.784194e-49	-8.615850e-47
Msa0403290	Msa0444170	0.805608	1.229741e-49	-8.615850e-47
Msa0403290	Msa0449880	0.868694	5.397030e-66	-8.615850e-47
Msa0403290	Msa0491730	0.809798	1.583422e-50	-8.615850e-47
Msa0403290	Msa0503040	0.836821	7.474453e-57	-8.615850e-47
Msa0403290	Msa0575960	0.800356	1.497761e-48	-8.615850e-47
Msa0403290	Msa1434710	0.822981	1.770967e-53	-8.615850e-47
Msa0403290	Msa1441220	0.804392	2.207867e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403290	MtrunA17_Chr3g0093871	97.921	433	9	0	1	433	1	433	0.0	877
Msa0403290	MtrunA17_Chr7g0255931	74.921	315	78	1	120	433	88	402	1.17e-172	489

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403290	AT2G26800.1	72.350	434	118	2	1	433	1	433	0.0	646
Msa0403290	AT2G26800.2	72.350	434	118	2	1	433	36	468	0.0	646
Msa0403290	AT2G26800.4	72.350	434	118	2	1	433	36	468	0.0	646
Msa0403290	AT2G26800.5	71.768	379	106	1	56	433	10	388	0.0	561
Msa0403290	AT2G26800.3	67.722	316	101	1	1	316	36	350	8.06e-155	442

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Find 136 sgRNAs with CRISPR-Local

Find 730 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAATGAATAAGTTAGT+TGG	0.431657	3_2:-32856939	None:intergenic
AAATGAATAAGTTAGTTGGT+TGG	0.550498	3_2:-32856935	None:intergenic
AACTGGAATTGAGAGCTCTT+TGG	0.334848	3_2:-32859654	None:intergenic
AAGAATTGGAGAAAACGTTG+AGG	0.650366	3_2:-32857086	None:intergenic
AAGCAGTTGGGGCGCCCCTC+TGG	0.273848	3_2:+32861662	Msa0403290:CDS
AAGTTAGCTGGACACGACTA+AGG	0.486476	3_2:-32862181	None:intergenic
AATGGCAGTCTTTGAGCCAG+AGG	0.609686	3_2:-32861678	None:intergenic
AATTCAATCTTTACATCTGT+TGG	0.426921	3_2:-32858872	None:intergenic
ACAAGTAGATAATTTGGGTA+TGG	0.441687	3_2:+32858144	Msa0403290:CDS
ACAATTGGGGTAGGCACACC+AGG	0.520924	3_2:+32860293	Msa0403290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGGGGGAATTTGAATA+TGG	-	chr3_2:32857042-32857061	None:intergenic	30.0%
TTTACGAAACCCTAGAAATT+GGG	-	chr3_2:32857057-32857076	None:intergenic	30.0%
TCTTTGACATGTTAAACCAA+AGG	+	chr3_2:32857336-32857355	Msa0403290:intron	30.0%
GCATATAATGCATATTGATC+CGG	+	chr3_2:32857437-32857456	Msa0403290:intron	30.0%
TACTCTTCTATGATGGTTAA+TGG	+	chr3_2:32857616-32857635	Msa0403290:intron	30.0%
CTAAATACAACTACAAGCAA+AGG	-	chr3_2:32857873-32857892	None:intergenic	30.0%
ATGATTTCTAACATTTCACC+AGG	-	chr3_2:32857954-32857973	None:intergenic	30.0%
ATACCCAAATTATCTACTTG+TGG	-	chr3_2:32858145-32858164	None:intergenic	30.0%
ACAAGTAGATAATTTGGGTA+TGG	+	chr3_2:32858144-32858163	Msa0403290:CDS	30.0%
CAAGTAGATAATTTGGGTAT+GGG	+	chr3_2:32858145-32858164	Msa0403290:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	32856924	32862193	32856924	ID=Msa0403290;Name=Msa0403290
chr3_2	mRNA	32856924	32862193	32856924	ID=Msa0403290-mRNA-1;Parent=Msa0403290;Name=Msa0403290-mRNA-1;_AED=0.12;_eAED=0.12;_QI=233\|1\|1\|1\|0.87\|0.77\|9\|454\|433
chr3_2	exon	32856924	32857131	32856924	ID=Msa0403290-mRNA-1:exon:6499;Parent=Msa0403290-mRNA-1
chr3_2	exon	32858024	32858215	32858024	ID=Msa0403290-mRNA-1:exon:6500;Parent=Msa0403290-mRNA-1
chr3_2	exon	32858384	32858591	32858384	ID=Msa0403290-mRNA-1:exon:6501;Parent=Msa0403290-mRNA-1
chr3_2	exon	32858791	32858970	32858791	ID=Msa0403290-mRNA-1:exon:6502;Parent=Msa0403290-mRNA-1
chr3_2	exon	32859364	32859444	32859364	ID=Msa0403290-mRNA-1:exon:6503;Parent=Msa0403290-mRNA-1
chr3_2	exon	32859518	32859681	32859518	ID=Msa0403290-mRNA-1:exon:6504;Parent=Msa0403290-mRNA-1
chr3_2	exon	32860178	32860314	32860178	ID=Msa0403290-mRNA-1:exon:6505;Parent=Msa0403290-mRNA-1
chr3_2	exon	32860865	32860980	32860865	ID=Msa0403290-mRNA-1:exon:6506;Parent=Msa0403290-mRNA-1
chr3_2	exon	32861491	32862193	32861491	ID=Msa0403290-mRNA-1:exon:6507;Parent=Msa0403290-mRNA-1
chr3_2	five_prime_UTR	32856924	32857131	32856924	ID=Msa0403290-mRNA-1:five_prime_utr;Parent=Msa0403290-mRNA-1
chr3_2	five_prime_UTR	32858024	32858048	32858024	ID=Msa0403290-mRNA-1:five_prime_utr;Parent=Msa0403290-mRNA-1
chr3_2	CDS	32858049	32858215	32858049	ID=Msa0403290-mRNA-1:cds;Parent=Msa0403290-mRNA-1
chr3_2	CDS	32858384	32858591	32858384	ID=Msa0403290-mRNA-1:cds;Parent=Msa0403290-mRNA-1
chr3_2	CDS	32858791	32858970	32858791	ID=Msa0403290-mRNA-1:cds;Parent=Msa0403290-mRNA-1
chr3_2	CDS	32859364	32859444	32859364	ID=Msa0403290-mRNA-1:cds;Parent=Msa0403290-mRNA-1
chr3_2	CDS	32859518	32859681	32859518	ID=Msa0403290-mRNA-1:cds;Parent=Msa0403290-mRNA-1
chr3_2	CDS	32860178	32860314	32860178	ID=Msa0403290-mRNA-1:cds;Parent=Msa0403290-mRNA-1
chr3_2	CDS	32860865	32860980	32860865	ID=Msa0403290-mRNA-1:cds;Parent=Msa0403290-mRNA-1
chr3_2	CDS	32861491	32861739	32861491	ID=Msa0403290-mRNA-1:cds;Parent=Msa0403290-mRNA-1
chr3_2	three_prime_UTR	32861740	32862193	32861740	ID=Msa0403290-mRNA-1:three_prime_utr;Parent=Msa0403290-mRNA-1

Gene Sequence

>Msa0403290

ATGTCAAGTTTGGAGGAGCCACTTGGCCATGACAAGCTGCCAAGCATGAGTACCATGGACAGAGTTCAGAGGTTCTCATCTGGTTGTTGCCGTCCACAAGTAGATAATTTGGGTATGGGAAACTGCTTTATTGAAGGACGAAGTTGCAGCACATCTAATAGCTGCAATGAAGACAATGAAGATTACACAGCAGAAACATACCCTTGGAAAAGGCAAACAAGAGACATGTCCCGAGGTGACTCTTTCAGTCCAAGGACTATGACCACAGGGAGAAACACGATGAAATTTGGAATCGTTGACAAACCACTTTGTACCTCAGATTACCAGTATGGTCAAAAGCGCAATAACAAAGACATGCAAGATATGGCATATAAGTTTATGAAAGGTATGCCTGAGTTTGTTAAGATAGTTGAAGTTGGACCAAGGGATGGATTACAAAATGAGAAGAACATTGTACCAACAGATGTAAAGATTGAATTGATTCATAGACTAGCATCTACTGGGTTATCTGTCATTGAGGCTACTAGTTTTGTGTCTCCCAAATGGGTCCCACAGTTGGCTGACGCAAAAGATGTGATGCAAGCAGTTCATAACCTGAGAGGCATCAGATTGCCAGTTCTGACTCCTAATTTAAAGGGGTTTGAAGCTGCTGTTGCTGCTGGAGCTAGAGAAGTAGCTGTTTTTGCATCAGCTTCTGAATCTTTCTCAAAATCAAACATTAATTGTAGTATTGAAGAGAGTCTTTCCCGCTATCGAGCTGTCACTCGTGCTGCCAAAGAGCTCTCAATTCCAGTTCGAGGGTATGTATCATGCGTTGTTGGATGCCCAGTTGAAGGACCGGTTCCTCCATCAAAAGTAGCTTATGTAGCTAAAGCACTATATGATATGGGTTGTTTCGAAATCTCACTTGGTGACACAATTGGGGTAGGCACACCAGGCACCGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTTCCAACAGAAAAGCTTGCTGTCCACTTCCATGACACATATGGGCAATCCCTTCCAAACATTCTTGTCTCCCTCCAAATGGGAATAAGTGCTGTGGATTCTTCAGTTGCTGGTCTTGGTGGCTGTCCATATGCTAAGGGGGCATCAGGAAATGTAGCGACGGAAGATGTTGTGTACATGCTGAATGGACTTGGTATCAAAACCAACGTTGATATTGGAAAGCTCATGCAAGCTGGCGACTTCATCGGCAAGCAGTTGGGGCGCCCCTCTGGCTCAAAGACTGCCATTGCCCTTAACCGAGTCACTGCTGATGCTTCCAAGATATGA

Protein sequence

>Msa0403290

MSSLEEPLGHDKLPSMSTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCNEDNEDYTAETYPWKRQTRDMSRGDSFSPRTMTTGRNTMKFGIVDKPLCTSDYQYGQKRNNKDMQDMAYKFMKGMPEFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASTGLSVIEATSFVSPKWVPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAVAAGAREVAVFASASESFSKSNINCSIEESLSRYRAVTRAAKELSIPVRGYVSCVVGCPVEGPVPPSKVAYVAKALYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPTEKLAVHFHDTYGQSLPNILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTNVDIGKLMQAGDFIGKQLGRPSGSKTAIALNRVTADASKI*