AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575960 MtrunA17_Chr8g0393251 96.200 421 13 1 1 418 1 421 0.0 832
Msa0575960 MtrunA17_Chr6g0479321 65.128 390 123 5 30 418 41 418 6.52e-167 474
Msa0575960 MtrunA17_Chr5g0410131 45.199 427 195 11 4 416 7 408 3.76e-112 335
Msa0575960 MtrunA17_Chr8g0339211 32.153 367 190 10 71 413 36 367 1.01e-51 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575960 AT3G17800.2 67.760 366 109 5 55 418 69 427 4.23e-164 468
Msa0575960 AT1G48450.1 64.075 373 119 5 54 418 58 423 4.25e-164 468
Msa0575960 AT3G17800.1 67.760 366 109 5 55 418 63 421 5.44e-164 468
Msa0575960 AT1G48450.3 59.191 272 96 5 54 317 58 322 2.32e-102 307
Msa0575960 AT1G48450.2 58.333 276 100 5 54 321 58 326 3.23e-101 305
Msa0575960 AT1G32160.1 45.000 380 166 9 54 416 51 404 2.09e-100 305
Msa0575960 AT3G07310.1 36.141 368 183 11 59 418 33 356 7.96e-54 183
Msa0575960 AT3G07310.2 36.879 282 133 8 142 418 11 252 5.99e-45 157
Msa0575960 AT5G48590.1 33.426 359 165 8 60 413 39 328 7.87e-45 159

Find 142 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTAGCTTTGGTGGTTTA+AGG 0.185413 4_1:+79959275 Msa0575960:CDS
CTTTCCTCCTTCTAATAATA+AGG 0.195362 4_1:+79957885 Msa0575960:CDS
TTTATATTAAATTAAAATAT+TGG 0.208543 4_1:+79957652 Msa0575960:five_prime_UTR
GAATGAGAGCCAAGTGGTTT+TGG 0.255570 4_1:-79958769 None:intergenic
AACCACTTGGCTCTCATTCT+TGG 0.279367 4_1:+79958773 Msa0575960:CDS
ATAAATTAATTAATAATAAC+TGG 0.295699 4_1:-79959516 None:intergenic
CTCACGTGTGATAACCATTC+CGG 0.313242 4_1:-79959218 None:intergenic
GATAGTACCTTATTATTAGA+AGG 0.339689 4_1:-79957892 None:intergenic
GAAATGGATGGATTCTTGTT+TGG 0.341565 4_1:-79957747 None:intergenic
ATCTTATTGTTGCGTATCTC+TGG 0.348662 4_1:-79959141 None:intergenic
AAGCACACAGAGGCATTGTT+TGG 0.370683 4_1:+79959190 Msa0575960:CDS
TCGACCCTACCAGTTGCATC+TGG 0.375048 4_1:-79958683 None:intergenic
AAATAATTCTCGGGCCTACT+AGG 0.385789 4_1:-79957628 None:intergenic
ACTTCTCCAGCTGGAACCTT+TGG 0.389283 4_1:-79958901 None:intergenic
GCAATCTTATGAGAAGAGTC+TGG 0.407257 4_1:-79958278 None:intergenic
GAAACCATCAAAATTAGCTT+TGG 0.409557 4_1:+79959265 Msa0575960:CDS
ATACGCAACAATAAGATCTA+AGG 0.415923 4_1:+79959147 Msa0575960:CDS
GATGTCAGTCCTGGTGGATT+TGG 0.419214 4_1:+79959058 Msa0575960:CDS
ATTGGTTGTGCAAAAGTTCA+TGG 0.419257 4_1:+79958628 Msa0575960:CDS
ACCATCAAAATTAGCTTTGG+TGG 0.419551 4_1:+79959268 Msa0575960:CDS
TAATATAAATAAATAATTCT+CGG 0.427467 4_1:-79957638 None:intergenic
CGAGCAGATGAACGAAGAAA+TGG 0.431902 4_1:-79957763 None:intergenic
ATGTTGTAGGAGAAGGATCT+TGG 0.432474 4_1:-79958439 None:intergenic
AATATAAATAAATAATTCTC+GGG 0.437419 4_1:-79957637 None:intergenic
CCACCGCAGCAGGCACAAGA+TGG 0.439006 4_1:-79958361 None:intergenic
CCAGGCCAAGTAGATACTTC+AGG 0.441052 4_1:-79959031 None:intergenic
CAACTCAATTTAAGACGAAA+TGG 0.445619 4_1:-79959369 None:intergenic
AGTTGCTGGTCCACCGCAGC+AGG 0.446973 4_1:-79958371 None:intergenic
CCATCTTGTGCCTGCTGCGG+TGG 0.450747 4_1:+79958361 Msa0575960:CDS
CTCATCCTGAAGTATCTACT+TGG 0.453032 4_1:+79959026 Msa0575960:CDS
TCACGTGTGATAACCATTCC+GGG 0.453796 4_1:-79959217 None:intergenic
ACAAGATCGGTGGATGTTGT+AGG 0.463443 4_1:-79958452 None:intergenic
TCATGCTTATGCCTAGGGAT+GGG 0.466457 4_1:-79958164 None:intergenic
CAGGAGAATTGCTGAGGTCA+AGG 0.467848 4_1:+79958565 Msa0575960:intron
CTTCAGGATGAGATGTCACT+TGG 0.474439 4_1:-79959015 None:intergenic
ATTGGAGCTGGAGAAGTTGC+TGG 0.477347 4_1:-79958385 None:intergenic
GGATGGATTCTTGTTTGGAT+TGG 0.478376 4_1:-79957742 None:intergenic
TAGAAGGAGGAAAGTGAAGA+AGG 0.482490 4_1:-79957876 None:intergenic
CATGCTTATGCCTAGGGATG+GGG 0.483080 4_1:-79958163 None:intergenic
AGTTGCATCTGGGGTTATAG+AGG 0.486143 4_1:-79958672 None:intergenic
TATTAAATTAAAATATTGGA+GGG 0.487155 4_1:+79957656 Msa0575960:five_prime_UTR
CACCGCAGCAGGCACAAGAT+GGG 0.488056 4_1:-79958360 None:intergenic
AAGAAGACGGCGGTGATAAG+AGG 0.488970 4_1:-79957831 None:intergenic
TGGGTCTGGCGAGGAGGAAG+AGG 0.490825 4_1:-79958258 None:intergenic
GATTCATGGTCAAATGAAGA+TGG 0.491027 4_1:+79958704 Msa0575960:CDS
CTCATGCTTATGCCTAGGGA+TGG 0.491888 4_1:-79958165 None:intergenic
CTCATTCTTGGTAACAGAGC+AGG 0.493044 4_1:+79958785 Msa0575960:CDS
AAATGAAAGGAGGACAGCTC+TGG 0.495873 4_1:+79958589 Msa0575960:CDS
TCTATAACCCCAGATGCAAC+TGG 0.497553 4_1:+79958674 Msa0575960:CDS
CAACTGGTAGGGTCGATTCA+TGG 0.499248 4_1:+79958690 Msa0575960:CDS
CGACCCTACCAGTTGCATCT+GGG 0.501121 4_1:-79958682 None:intergenic
CCTGGTGGCGATGTCAGTCC+TGG 0.502730 4_1:+79959049 Msa0575960:CDS
CCTGAAGTATCTACTTGGCC+TGG 0.503117 4_1:+79959031 Msa0575960:CDS
CAAATTAGCAAACTGAGGAT+AGG 0.505986 4_1:+79958827 Msa0575960:CDS
CCGTCTTCTTCAATTACAAT+CGG 0.509650 4_1:+79957844 Msa0575960:CDS
TTATGAGAAGAGTCTGGGTC+TGG 0.513057 4_1:-79958272 None:intergenic
AACTATGTGATGTCCTTTGA+CGG 0.517188 4_1:+79959109 Msa0575960:CDS
GTCTCTCATGCTTATGCCTA+GGG 0.517855 4_1:-79958169 None:intergenic
AAATTAGCAAACTGAGGATA+GGG 0.522002 4_1:+79958828 Msa0575960:CDS
GAGCAGCATCACGATCAGAT+TGG 0.523258 4_1:-79958403 None:intergenic
TGAGAAAGAAACTGACCGAT+TGG 0.524356 4_1:-79958320 None:intergenic
CTTCAGTTTCAGTCTCCAAT+CGG 0.525591 4_1:+79958305 Msa0575960:CDS
AGGAAAGTGAAGAAGGCGGC+AGG 0.526126 4_1:-79957869 None:intergenic
TGATAAGAGGAGGACGGCTG+TGG 0.526370 4_1:-79957818 None:intergenic
ACCGCAGCAGGCACAAGATG+GGG 0.529440 4_1:-79958359 None:intergenic
CATCACGATCAGATTGGAGC+TGG 0.529818 4_1:-79958397 None:intergenic
ATATTAAATTAAAATATTGG+AGG 0.531207 4_1:+79957655 Msa0575960:five_prime_UTR
TATGCAGCATCAGTGATGTA+TGG 0.532897 4_1:+79958857 Msa0575960:CDS
CAGTTTGCTAATTTGAGCAA+CGG 0.532928 4_1:-79958819 None:intergenic
AAACAATGCCTTCGAACATG+TGG 0.537852 4_1:-79959401 None:intergenic
CTGGAGGGTATCACCGTCAA+AGG 0.539393 4_1:-79959122 None:intergenic
GAAGTGTCCACTTCACTACC+AGG 0.539689 4_1:-79958992 None:intergenic
AGTCTCTCATGCTTATGCCT+AGG 0.540729 4_1:-79958170 None:intergenic
GCACTTCCGTCCCCATCCCT+AGG 0.541488 4_1:+79958153 Msa0575960:CDS
AGTCCTGGTGGATTTGGCTA+TGG 0.543579 4_1:+79959064 Msa0575960:CDS
TGATGAATACTACTGTCGTC+TGG 0.547484 4_1:-79958947 None:intergenic
TTATTGTTGCGTATCTCTGG+AGG 0.549788 4_1:-79959138 None:intergenic
CTGTGGCTGCCACGTCCATA+CGG 0.555378 4_1:-79957801 None:intergenic
CCAGGACTGACATCGCCACC+AGG 0.556642 4_1:-79959049 None:intergenic
ATTGTTTGGAAGACCCGGAA+TGG 0.558540 4_1:+79959204 Msa0575960:CDS
AGTTGACCAAAGGTTCCAGC+TGG 0.559976 4_1:+79958895 Msa0575960:CDS
ATTCATGGTCAAATGAAGAT+GGG 0.560883 4_1:+79958705 Msa0575960:CDS
TTCTTAAGCGAGTTGACCAA+AGG 0.564871 4_1:+79958885 Msa0575960:CDS
CTTTCATCGACTTCTCCAGC+TGG 0.565573 4_1:-79958910 None:intergenic
CAATCTTATGAGAAGAGTCT+GGG 0.567804 4_1:-79958277 None:intergenic
AAGCATGAGAGACTCTCTGT+TGG 0.570763 4_1:+79958179 Msa0575960:CDS
GAGGCATTGTTTGGAAGACC+CGG 0.570792 4_1:+79959199 Msa0575960:CDS
CTAACCTAGCCGTATGGACG+TGG 0.574142 4_1:+79957792 Msa0575960:exon
TCGGTGGATGTTGTAGGAGA+AGG 0.576997 4_1:-79958446 None:intergenic
CATCACATAGTTACGCAACC+TGG 0.581846 4_1:-79959098 None:intergenic
TAGTATTCATCAAACTATTG+TGG 0.584247 4_1:+79958958 Msa0575960:CDS
GTAAAAGTTTCTTACTACTG+TGG 0.587181 4_1:+79959689 Msa0575960:three_prime_UTR
TAGCAAACTGAGGATAGGGC+AGG 0.587895 4_1:+79958832 Msa0575960:CDS
ATTAAATTAAAATATTGGAG+GGG 0.588881 4_1:+79957657 Msa0575960:five_prime_UTR
GACCCTACCAGTTGCATCTG+GGG 0.591341 4_1:-79958681 None:intergenic
AACCCCAGATGCAACTGGTA+GGG 0.592069 4_1:+79958679 Msa0575960:CDS
AGAGTCTGGGTCTGGCGAGG+AGG 0.592281 4_1:-79958264 None:intergenic
TAACCCCAGATGCAACTGGT+AGG 0.592551 4_1:+79958678 Msa0575960:CDS
TCTAGTCTAACCTAGCCGTA+TGG 0.592574 4_1:+79957786 Msa0575960:exon
GTGCTTCTCAATAATGCTCA+CGG 0.595139 4_1:-79959173 None:intergenic
TATTGTTGCGTATCTCTGGA+GGG 0.599151 4_1:-79959137 None:intergenic
GGAAGAGATCTTGTACACAT+TGG 0.602232 4_1:+79958610 Msa0575960:CDS
GCATCCTCCCACATGTTCGA+AGG 0.608809 4_1:+79959393 Msa0575960:three_prime_UTR
AGTACCTTATTATTAGAAGG+AGG 0.610361 4_1:-79957889 None:intergenic
CCGCAGCAGGCACAAGATGG+GGG 0.617352 4_1:-79958358 None:intergenic
AATGGTTATCACACGTGAGG+GGG 0.623377 4_1:+79959222 Msa0575960:CDS
CGCAACAATAAGATCTAAGG+AGG 0.623407 4_1:+79959150 Msa0575960:CDS
AGAAGAGTCTGGGTCTGGCG+AGG 0.623678 4_1:-79958267 None:intergenic
ATACCATAGCCAAATCCACC+AGG 0.624211 4_1:-79959067 None:intergenic
GCTGCCACGTCCATACGGCT+AGG 0.625385 4_1:-79957796 None:intergenic
AACAATGCCTTCGAACATGT+GGG 0.626537 4_1:-79959400 None:intergenic
GGAATGGTTATCACACGTGA+GGG 0.627905 4_1:+79959220 Msa0575960:CDS
GTTGCATCTGGGGTTATAGA+GGG 0.629178 4_1:-79958671 None:intergenic
CCTGTACAAAACAAGATCGG+TGG 0.629414 4_1:-79958462 None:intergenic
TTTGCTAATTTGAGCAACGG+AGG 0.631175 4_1:-79958816 None:intergenic
AAACCTGTACAAAACAAGAT+CGG 0.632341 4_1:-79958465 None:intergenic
ATTGGAGACTGAAACTGAAG+AGG 0.632400 4_1:-79958302 None:intergenic
GGTGGCGATGTCAGTCCTGG+TGG 0.636075 4_1:+79959052 Msa0575960:CDS
TTCAGGATGAGATGTCACTT+GGG 0.636764 4_1:-79959014 None:intergenic
CGGAATGGTTATCACACGTG+AGG 0.638347 4_1:+79959219 Msa0575960:CDS
TGAGATGATCCAAAACCACT+TGG 0.639402 4_1:+79958760 Msa0575960:CDS
CTGAGGTCAAGGCAAATGAA+AGG 0.640671 4_1:+79958576 Msa0575960:CDS
GCTATGGTATAAAGCCGACC+AGG 0.641906 4_1:+79959080 Msa0575960:CDS
TGCAAGACCTGGTAGTGAAG+TGG 0.643713 4_1:+79958985 Msa0575960:CDS
TTGAGAGCTACGTGGACTCG+AGG 0.645363 4_1:+79959344 Msa0575960:CDS
CCGATTGTAATTGAAGAAGA+CGG 0.646078 4_1:-79957844 None:intergenic
AAGACGGCGGTGATAAGAGG+AGG 0.647164 4_1:-79957828 None:intergenic
GAAGTATCTACTTGGCCTGG+TGG 0.652940 4_1:+79959034 Msa0575960:CDS
CAGATGAACGAAGAAATGGA+TGG 0.660221 4_1:-79957759 None:intergenic
GAATGGTTATCACACGTGAG+GGG 0.665737 4_1:+79959221 Msa0575960:CDS
ACATAGTTACGCAACCTGGT+CGG 0.667626 4_1:-79959094 None:intergenic
TACCAAGAATGAGAGCCAAG+TGG 0.671508 4_1:-79958775 None:intergenic
CGGCGGTGATAAGAGGAGGA+CGG 0.675716 4_1:-79957824 None:intergenic
CTTATGCCTAGGGATGGGGA+CGG 0.676237 4_1:-79958159 None:intergenic
CTGGGATGTTGAGAGCTACG+TGG 0.676347 4_1:+79959336 Msa0575960:CDS
AGGTCAAGGCAAATGAAAGG+AGG 0.687801 4_1:+79958579 Msa0575960:CDS
ATTGTGGATGATGCAAGACC+TGG 0.688318 4_1:+79958974 Msa0575960:CDS
AATGCCTTCGAACATGTGGG+AGG 0.688992 4_1:-79959397 None:intergenic
TTGCTCAAATTAGCAAACTG+AGG 0.691447 4_1:+79958822 Msa0575960:CDS
AAGGAGGAAAGTGAAGAAGG+CGG 0.701835 4_1:-79957873 None:intergenic
ATTGTAATTGAAGAAGACGG+CGG 0.764043 4_1:-79957841 None:intergenic
CATTATTGAGAAGCACACAG+AGG 0.764856 4_1:+79959180 Msa0575960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATTAAATTAAAATAT+TGG + chr4_1:79957652-79957671 Msa0575960:five_prime_UTR 0.0%
!! TTTATATTAAATTAAAATAT+TGG + chr4_1:79957652-79957671 Msa0575960:five_prime_UTR 0.0%
!! AATATAAATAAATAATTCTC+GGG - chr4_1:79957640-79957659 None:intergenic 10.0%
!! ATATTAAATTAAAATATTGG+AGG + chr4_1:79957655-79957674 Msa0575960:five_prime_UTR 10.0%
!! TATTAAATTAAAATATTGGA+GGG + chr4_1:79957656-79957675 Msa0575960:five_prime_UTR 10.0%
!! AATATAAATAAATAATTCTC+GGG - chr4_1:79957640-79957659 None:intergenic 10.0%
!! ATATTAAATTAAAATATTGG+AGG + chr4_1:79957655-79957674 Msa0575960:five_prime_UTR 10.0%
!! TATTAAATTAAAATATTGGA+GGG + chr4_1:79957656-79957675 Msa0575960:five_prime_UTR 10.0%
!! ATTAAATTAAAATATTGGAG+GGG + chr4_1:79957657-79957676 Msa0575960:five_prime_UTR 15.0%
!! ATTAAATTAAAATATTGGAG+GGG + chr4_1:79957657-79957676 Msa0575960:five_prime_UTR 15.0%
!! AAATTGCAAGATATTATACA+GGG - chr4_1:79958069-79958088 None:intergenic 20.0%
!! TAAATTGCAAGATATTATAC+AGG - chr4_1:79958070-79958089 None:intergenic 20.0%
!!! TCTTTTTCTTCAAAAAAAAC+TGG - chr4_1:79959486-79959505 None:intergenic 20.0%
!! AAATTGCAAGATATTATACA+GGG - chr4_1:79958069-79958088 None:intergenic 20.0%
!! TAAATTGCAAGATATTATAC+AGG - chr4_1:79958070-79958089 None:intergenic 20.0%
!!! TCTTTTTCTTCAAAAAAAAC+TGG - chr4_1:79959486-79959505 None:intergenic 20.0%
!! TTTTTACTTTACAAGCGTAA+CGG - chr4_1:79957708-79957727 None:intergenic 25.0%
! GATAGTACCTTATTATTAGA+AGG - chr4_1:79957895-79957914 None:intergenic 25.0%
! AATTGCAAGATATTATACAG+GGG - chr4_1:79958068-79958087 None:intergenic 25.0%
! TCATATATTCTGTTTGTTTG+TGG - chr4_1:79958102-79958121 None:intergenic 25.0%
! TAGTATTCATCAAACTATTG+TGG + chr4_1:79958958-79958977 Msa0575960:CDS 25.0%
!! TTTTTACTTTACAAGCGTAA+CGG - chr4_1:79957708-79957727 None:intergenic 25.0%
! GATAGTACCTTATTATTAGA+AGG - chr4_1:79957895-79957914 None:intergenic 25.0%
! AATTGCAAGATATTATACAG+GGG - chr4_1:79958068-79958087 None:intergenic 25.0%
! TCATATATTCTGTTTGTTTG+TGG - chr4_1:79958102-79958121 None:intergenic 25.0%
! TAGTATTCATCAAACTATTG+TGG + chr4_1:79958958-79958977 Msa0575960:CDS 25.0%
! TTTTACTTTACAAGCGTAAC+GGG - chr4_1:79957707-79957726 None:intergenic 30.0%
CTTTCCTCCTTCTAATAATA+AGG + chr4_1:79957885-79957904 Msa0575960:CDS 30.0%
AGTACCTTATTATTAGAAGG+AGG - chr4_1:79957892-79957911 None:intergenic 30.0%
TAATAATTACCACTAGTTGC+TGG + chr4_1:79957979-79957998 Msa0575960:intron 30.0%
!! ACCAAACTAATGCTTTGTTT+AGG + chr4_1:79958009-79958028 Msa0575960:intron 30.0%
! ACCTAAACAAAGCATTAGTT+TGG - chr4_1:79958013-79958032 None:intergenic 30.0%
ATTGCAAGATATTATACAGG+GGG - chr4_1:79958067-79958086 None:intergenic 30.0%
TGAAATATTGATCCATTCCT+TGG + chr4_1:79958119-79958138 Msa0575960:intron 30.0%
AAACCTGTACAAAACAAGAT+CGG - chr4_1:79958468-79958487 None:intergenic 30.0%
AGGACAATAGATTGATGAAT+TGG - chr4_1:79958494-79958513 None:intergenic 30.0%
ATGAACAAGCAAGAAATAGT+AGG - chr4_1:79958514-79958533 None:intergenic 30.0%
!! ACTATCTTCTCAACTTTTTC+AGG + chr4_1:79958546-79958565 Msa0575960:intron 30.0%
ATTCATGGTCAAATGAAGAT+GGG + chr4_1:79958705-79958724 Msa0575960:CDS 30.0%
AAATTAGCAAACTGAGGATA+GGG + chr4_1:79958828-79958847 Msa0575960:CDS 30.0%
ATACGCAACAATAAGATCTA+AGG + chr4_1:79959147-79959166 Msa0575960:CDS 30.0%
! GAAACCATCAAAATTAGCTT+TGG + chr4_1:79959265-79959284 Msa0575960:CDS 30.0%
!! AAATTAGCTTTGGTGGTTTA+AGG + chr4_1:79959275-79959294 Msa0575960:CDS 30.0%
!!! TTTAAGGAGACTTGTTTTAG+AGG + chr4_1:79959291-79959310 Msa0575960:CDS 30.0%
! CAACTCAATTTAAGACGAAA+TGG - chr4_1:79959372-79959391 None:intergenic 30.0%
! GACTATAATGAGTTTTTGCT+GGG - chr4_1:79959638-79959657 None:intergenic 30.0%
! TGACTATAATGAGTTTTTGC+TGG - chr4_1:79959639-79959658 None:intergenic 30.0%
GTAAAAGTTTCTTACTACTG+TGG + chr4_1:79959689-79959708 Msa0575960:three_prime_UTR 30.0%
! TTTTACTTTACAAGCGTAAC+GGG - chr4_1:79957707-79957726 None:intergenic 30.0%
CTTTCCTCCTTCTAATAATA+AGG + chr4_1:79957885-79957904 Msa0575960:CDS 30.0%
AGTACCTTATTATTAGAAGG+AGG - chr4_1:79957892-79957911 None:intergenic 30.0%
TAATAATTACCACTAGTTGC+TGG + chr4_1:79957979-79957998 Msa0575960:intron 30.0%
!! ACCAAACTAATGCTTTGTTT+AGG + chr4_1:79958009-79958028 Msa0575960:intron 30.0%
! ACCTAAACAAAGCATTAGTT+TGG - chr4_1:79958013-79958032 None:intergenic 30.0%
ATTGCAAGATATTATACAGG+GGG - chr4_1:79958067-79958086 None:intergenic 30.0%
TGAAATATTGATCCATTCCT+TGG + chr4_1:79958119-79958138 Msa0575960:intron 30.0%
AAACCTGTACAAAACAAGAT+CGG - chr4_1:79958468-79958487 None:intergenic 30.0%
AGGACAATAGATTGATGAAT+TGG - chr4_1:79958494-79958513 None:intergenic 30.0%
ATGAACAAGCAAGAAATAGT+AGG - chr4_1:79958514-79958533 None:intergenic 30.0%
!! ACTATCTTCTCAACTTTTTC+AGG + chr4_1:79958546-79958565 Msa0575960:intron 30.0%
ATTCATGGTCAAATGAAGAT+GGG + chr4_1:79958705-79958724 Msa0575960:CDS 30.0%
AAATTAGCAAACTGAGGATA+GGG + chr4_1:79958828-79958847 Msa0575960:CDS 30.0%
ATACGCAACAATAAGATCTA+AGG + chr4_1:79959147-79959166 Msa0575960:CDS 30.0%
! GAAACCATCAAAATTAGCTT+TGG + chr4_1:79959265-79959284 Msa0575960:CDS 30.0%
!! AAATTAGCTTTGGTGGTTTA+AGG + chr4_1:79959275-79959294 Msa0575960:CDS 30.0%
!!! TTTAAGGAGACTTGTTTTAG+AGG + chr4_1:79959291-79959310 Msa0575960:CDS 30.0%
! CAACTCAATTTAAGACGAAA+TGG - chr4_1:79959372-79959391 None:intergenic 30.0%
! GACTATAATGAGTTTTTGCT+GGG - chr4_1:79959638-79959657 None:intergenic 30.0%
! TGACTATAATGAGTTTTTGC+TGG - chr4_1:79959639-79959658 None:intergenic 30.0%
GTAAAAGTTTCTTACTACTG+TGG + chr4_1:79959689-79959708 Msa0575960:three_prime_UTR 30.0%
! GAAATGGATGGATTCTTGTT+TGG - chr4_1:79957750-79957769 None:intergenic 35.0%
ATTGTAATTGAAGAAGACGG+CGG - chr4_1:79957844-79957863 None:intergenic 35.0%
CCGATTGTAATTGAAGAAGA+CGG - chr4_1:79957847-79957866 None:intergenic 35.0%
CCGTCTTCTTCAATTACAAT+CGG + chr4_1:79957844-79957863 Msa0575960:CDS 35.0%
ATATTGATCCATTCCTTGGT+TGG + chr4_1:79958123-79958142 Msa0575960:intron 35.0%
CAATCTTATGAGAAGAGTCT+GGG - chr4_1:79958280-79958299 None:intergenic 35.0%
AAGTTGAGAAGATAGTGCAA+TGG - chr4_1:79958542-79958561 None:intergenic 35.0%
ATTGGTTGTGCAAAAGTTCA+TGG + chr4_1:79958628-79958647 Msa0575960:CDS 35.0%
GATTCATGGTCAAATGAAGA+TGG + chr4_1:79958704-79958723 Msa0575960:CDS 35.0%
!! CAGTTTGCTAATTTGAGCAA+CGG - chr4_1:79958822-79958841 None:intergenic 35.0%
TTGCTCAAATTAGCAAACTG+AGG + chr4_1:79958822-79958841 Msa0575960:CDS 35.0%
CAAATTAGCAAACTGAGGAT+AGG + chr4_1:79958827-79958846 Msa0575960:CDS 35.0%
AACTATGTGATGTCCTTTGA+CGG + chr4_1:79959109-79959128 Msa0575960:CDS 35.0%
ATCTTATTGTTGCGTATCTC+TGG - chr4_1:79959144-79959163 None:intergenic 35.0%
!! ACCATCAAAATTAGCTTTGG+TGG + chr4_1:79959268-79959287 Msa0575960:CDS 35.0%
! ACCACCAAAGCTAATTTTGA+TGG - chr4_1:79959272-79959291 None:intergenic 35.0%
!! TGACTTTTGGTTGTTTTCTC+TGG + chr4_1:79959317-79959336 Msa0575960:CDS 35.0%
!! GACTTTTGGTTGTTTTCTCT+GGG + chr4_1:79959318-79959337 Msa0575960:CDS 35.0%
!!! AAGGCATTGTTTTCGTATGT+TGG + chr4_1:79959412-79959431 Msa0575960:three_prime_UTR 35.0%
! GAAATGGATGGATTCTTGTT+TGG - chr4_1:79957750-79957769 None:intergenic 35.0%
ATTGTAATTGAAGAAGACGG+CGG - chr4_1:79957844-79957863 None:intergenic 35.0%
CCGATTGTAATTGAAGAAGA+CGG - chr4_1:79957847-79957866 None:intergenic 35.0%
CCGTCTTCTTCAATTACAAT+CGG + chr4_1:79957844-79957863 Msa0575960:CDS 35.0%
ATATTGATCCATTCCTTGGT+TGG + chr4_1:79958123-79958142 Msa0575960:intron 35.0%
CAATCTTATGAGAAGAGTCT+GGG - chr4_1:79958280-79958299 None:intergenic 35.0%
AAGTTGAGAAGATAGTGCAA+TGG - chr4_1:79958542-79958561 None:intergenic 35.0%
ATTGGTTGTGCAAAAGTTCA+TGG + chr4_1:79958628-79958647 Msa0575960:CDS 35.0%
GATTCATGGTCAAATGAAGA+TGG + chr4_1:79958704-79958723 Msa0575960:CDS 35.0%
!! CAGTTTGCTAATTTGAGCAA+CGG - chr4_1:79958822-79958841 None:intergenic 35.0%
TTGCTCAAATTAGCAAACTG+AGG + chr4_1:79958822-79958841 Msa0575960:CDS 35.0%
CAAATTAGCAAACTGAGGAT+AGG + chr4_1:79958827-79958846 Msa0575960:CDS 35.0%
AACTATGTGATGTCCTTTGA+CGG + chr4_1:79959109-79959128 Msa0575960:CDS 35.0%
ATCTTATTGTTGCGTATCTC+TGG - chr4_1:79959144-79959163 None:intergenic 35.0%
!! ACCATCAAAATTAGCTTTGG+TGG + chr4_1:79959268-79959287 Msa0575960:CDS 35.0%
! ACCACCAAAGCTAATTTTGA+TGG - chr4_1:79959272-79959291 None:intergenic 35.0%
!! TGACTTTTGGTTGTTTTCTC+TGG + chr4_1:79959317-79959336 Msa0575960:CDS 35.0%
!! GACTTTTGGTTGTTTTCTCT+GGG + chr4_1:79959318-79959337 Msa0575960:CDS 35.0%
!!! AAGGCATTGTTTTCGTATGT+TGG + chr4_1:79959412-79959431 Msa0575960:three_prime_UTR 35.0%
! GGATGGATTCTTGTTTGGAT+TGG - chr4_1:79957745-79957764 None:intergenic 40.0%
CAGATGAACGAAGAAATGGA+TGG - chr4_1:79957762-79957781 None:intergenic 40.0%
TAGAAGGAGGAAAGTGAAGA+AGG - chr4_1:79957879-79957898 None:intergenic 40.0%
GTTGTAATTCCAGCAACTAG+TGG - chr4_1:79957991-79958010 None:intergenic 40.0%
GCAATCTTATGAGAAGAGTC+TGG - chr4_1:79958281-79958300 None:intergenic 40.0%
ATTGGAGACTGAAACTGAAG+AGG - chr4_1:79958305-79958324 None:intergenic 40.0%
CTTCAGTTTCAGTCTCCAAT+CGG + chr4_1:79958305-79958324 Msa0575960:CDS 40.0%
TGAGAAAGAAACTGACCGAT+TGG - chr4_1:79958323-79958342 None:intergenic 40.0%
!!! GAGAAGGATCTTGGTTTTGT+TGG - chr4_1:79958433-79958452 None:intergenic 40.0%
ATGTTGTAGGAGAAGGATCT+TGG - chr4_1:79958442-79958461 None:intergenic 40.0%
!!! CTTTTTCAGGAGAATTGCTG+AGG + chr4_1:79958559-79958578 Msa0575960:intron 40.0%
GGAAGAGATCTTGTACACAT+TGG + chr4_1:79958610-79958629 Msa0575960:CDS 40.0%
TGAGATGATCCAAAACCACT+TGG + chr4_1:79958760-79958779 Msa0575960:CDS 40.0%
TTTGCTAATTTGAGCAACGG+AGG - chr4_1:79958819-79958838 None:intergenic 40.0%
TATGCAGCATCAGTGATGTA+TGG + chr4_1:79958857-79958876 Msa0575960:CDS 40.0%
! TTCTTAAGCGAGTTGACCAA+AGG + chr4_1:79958885-79958904 Msa0575960:CDS 40.0%
TGATGAATACTACTGTCGTC+TGG - chr4_1:79958950-79958969 None:intergenic 40.0%
! TTCAGGATGAGATGTCACTT+GGG - chr4_1:79959017-79959036 None:intergenic 40.0%
! CTCATCCTGAAGTATCTACT+TGG + chr4_1:79959026-79959045 Msa0575960:CDS 40.0%
TATTGTTGCGTATCTCTGGA+GGG - chr4_1:79959140-79959159 None:intergenic 40.0%
TTATTGTTGCGTATCTCTGG+AGG - chr4_1:79959141-79959160 None:intergenic 40.0%
CGCAACAATAAGATCTAAGG+AGG + chr4_1:79959150-79959169 Msa0575960:CDS 40.0%
GTGCTTCTCAATAATGCTCA+CGG - chr4_1:79959176-79959195 None:intergenic 40.0%
! CATTATTGAGAAGCACACAG+AGG + chr4_1:79959180-79959199 Msa0575960:CDS 40.0%
GGGGGCAATTGATTATTCAA+AGG + chr4_1:79959240-79959259 Msa0575960:CDS 40.0%
!!! GTTTTAGAGGCTGTGACTTT+TGG + chr4_1:79959304-79959323 Msa0575960:CDS 40.0%
AACAATGCCTTCGAACATGT+GGG - chr4_1:79959403-79959422 None:intergenic 40.0%
AAACAATGCCTTCGAACATG+TGG - chr4_1:79959404-79959423 None:intergenic 40.0%
! GGATGGATTCTTGTTTGGAT+TGG - chr4_1:79957745-79957764 None:intergenic 40.0%
CAGATGAACGAAGAAATGGA+TGG - chr4_1:79957762-79957781 None:intergenic 40.0%
TAGAAGGAGGAAAGTGAAGA+AGG - chr4_1:79957879-79957898 None:intergenic 40.0%
GTTGTAATTCCAGCAACTAG+TGG - chr4_1:79957991-79958010 None:intergenic 40.0%
GCAATCTTATGAGAAGAGTC+TGG - chr4_1:79958281-79958300 None:intergenic 40.0%
ATTGGAGACTGAAACTGAAG+AGG - chr4_1:79958305-79958324 None:intergenic 40.0%
CTTCAGTTTCAGTCTCCAAT+CGG + chr4_1:79958305-79958324 Msa0575960:CDS 40.0%
TGAGAAAGAAACTGACCGAT+TGG - chr4_1:79958323-79958342 None:intergenic 40.0%
!!! GAGAAGGATCTTGGTTTTGT+TGG - chr4_1:79958433-79958452 None:intergenic 40.0%
ATGTTGTAGGAGAAGGATCT+TGG - chr4_1:79958442-79958461 None:intergenic 40.0%
!!! CTTTTTCAGGAGAATTGCTG+AGG + chr4_1:79958559-79958578 Msa0575960:intron 40.0%
GGAAGAGATCTTGTACACAT+TGG + chr4_1:79958610-79958629 Msa0575960:CDS 40.0%
TGAGATGATCCAAAACCACT+TGG + chr4_1:79958760-79958779 Msa0575960:CDS 40.0%
TTTGCTAATTTGAGCAACGG+AGG - chr4_1:79958819-79958838 None:intergenic 40.0%
TATGCAGCATCAGTGATGTA+TGG + chr4_1:79958857-79958876 Msa0575960:CDS 40.0%
! TTCTTAAGCGAGTTGACCAA+AGG + chr4_1:79958885-79958904 Msa0575960:CDS 40.0%
TGATGAATACTACTGTCGTC+TGG - chr4_1:79958950-79958969 None:intergenic 40.0%
! TTCAGGATGAGATGTCACTT+GGG - chr4_1:79959017-79959036 None:intergenic 40.0%
! CTCATCCTGAAGTATCTACT+TGG + chr4_1:79959026-79959045 Msa0575960:CDS 40.0%
TATTGTTGCGTATCTCTGGA+GGG - chr4_1:79959140-79959159 None:intergenic 40.0%
TTATTGTTGCGTATCTCTGG+AGG - chr4_1:79959141-79959160 None:intergenic 40.0%
CGCAACAATAAGATCTAAGG+AGG + chr4_1:79959150-79959169 Msa0575960:CDS 40.0%
GTGCTTCTCAATAATGCTCA+CGG - chr4_1:79959176-79959195 None:intergenic 40.0%
! CATTATTGAGAAGCACACAG+AGG + chr4_1:79959180-79959199 Msa0575960:CDS 40.0%
GGGGGCAATTGATTATTCAA+AGG + chr4_1:79959240-79959259 Msa0575960:CDS 40.0%
!!! GTTTTAGAGGCTGTGACTTT+TGG + chr4_1:79959304-79959323 Msa0575960:CDS 40.0%
AACAATGCCTTCGAACATGT+GGG - chr4_1:79959403-79959422 None:intergenic 40.0%
AAACAATGCCTTCGAACATG+TGG - chr4_1:79959404-79959423 None:intergenic 40.0%
CGAGCAGATGAACGAAGAAA+TGG - chr4_1:79957766-79957785 None:intergenic 45.0%
TCTAGTCTAACCTAGCCGTA+TGG + chr4_1:79957786-79957805 Msa0575960:exon 45.0%
AAGGAGGAAAGTGAAGAAGG+CGG - chr4_1:79957876-79957895 None:intergenic 45.0%
! TGATTGTTGTTGCTTGCTGC+TGG + chr4_1:79957946-79957965 Msa0575960:intron 45.0%
TGATCCATTCCTTGGTTGGT+AGG + chr4_1:79958127-79958146 Msa0575960:intron 45.0%
TCATGCTTATGCCTAGGGAT+GGG - chr4_1:79958167-79958186 None:intergenic 45.0%
GTCTCTCATGCTTATGCCTA+GGG - chr4_1:79958172-79958191 None:intergenic 45.0%
AGTCTCTCATGCTTATGCCT+AGG - chr4_1:79958173-79958192 None:intergenic 45.0%
AAGCATGAGAGACTCTCTGT+TGG + chr4_1:79958179-79958198 Msa0575960:CDS 45.0%
TTATGAGAAGAGTCTGGGTC+TGG - chr4_1:79958275-79958294 None:intergenic 45.0%
ACAAGATCGGTGGATGTTGT+AGG - chr4_1:79958455-79958474 None:intergenic 45.0%
CCTGTACAAAACAAGATCGG+TGG - chr4_1:79958465-79958484 None:intergenic 45.0%
!!! CCACCGATCTTGTTTTGTAC+AGG + chr4_1:79958462-79958481 Msa0575960:CDS 45.0%
CTGAGGTCAAGGCAAATGAA+AGG + chr4_1:79958576-79958595 Msa0575960:CDS 45.0%
AGGTCAAGGCAAATGAAAGG+AGG + chr4_1:79958579-79958598 Msa0575960:CDS 45.0%
AAATGAAAGGAGGACAGCTC+TGG + chr4_1:79958589-79958608 Msa0575960:CDS 45.0%
! GTTGCATCTGGGGTTATAGA+GGG - chr4_1:79958674-79958693 None:intergenic 45.0%
! AGTTGCATCTGGGGTTATAG+AGG - chr4_1:79958675-79958694 None:intergenic 45.0%
TCTATAACCCCAGATGCAAC+TGG + chr4_1:79958674-79958693 Msa0575960:CDS 45.0%
! GAATGAGAGCCAAGTGGTTT+TGG - chr4_1:79958772-79958791 None:intergenic 45.0%
! AACCACTTGGCTCTCATTCT+TGG + chr4_1:79958773-79958792 Msa0575960:CDS 45.0%
TACCAAGAATGAGAGCCAAG+TGG - chr4_1:79958778-79958797 None:intergenic 45.0%
! CTCATTCTTGGTAACAGAGC+AGG + chr4_1:79958785-79958804 Msa0575960:CDS 45.0%
ATTGTGGATGATGCAAGACC+TGG + chr4_1:79958974-79958993 Msa0575960:CDS 45.0%
CTTCAGGATGAGATGTCACT+TGG - chr4_1:79959018-79959037 None:intergenic 45.0%
ATACCATAGCCAAATCCACC+AGG - chr4_1:79959070-79959089 None:intergenic 45.0%
ACATAGTTACGCAACCTGGT+CGG - chr4_1:79959097-79959116 None:intergenic 45.0%
CATCACATAGTTACGCAACC+TGG - chr4_1:79959101-79959120 None:intergenic 45.0%
!! AAGCACACAGAGGCATTGTT+TGG + chr4_1:79959190-79959209 Msa0575960:CDS 45.0%
ATTGTTTGGAAGACCCGGAA+TGG + chr4_1:79959204-79959223 Msa0575960:CDS 45.0%
TCACGTGTGATAACCATTCC+GGG - chr4_1:79959220-79959239 None:intergenic 45.0%
CTCACGTGTGATAACCATTC+CGG - chr4_1:79959221-79959240 None:intergenic 45.0%
GGAATGGTTATCACACGTGA+GGG + chr4_1:79959220-79959239 Msa0575960:CDS 45.0%
GAATGGTTATCACACGTGAG+GGG + chr4_1:79959221-79959240 Msa0575960:CDS 45.0%
AATGGTTATCACACGTGAGG+GGG + chr4_1:79959222-79959241 Msa0575960:CDS 45.0%
CGAGCAGATGAACGAAGAAA+TGG - chr4_1:79957766-79957785 None:intergenic 45.0%
TCTAGTCTAACCTAGCCGTA+TGG + chr4_1:79957786-79957805 Msa0575960:exon 45.0%
AAGGAGGAAAGTGAAGAAGG+CGG - chr4_1:79957876-79957895 None:intergenic 45.0%
! TGATTGTTGTTGCTTGCTGC+TGG + chr4_1:79957946-79957965 Msa0575960:intron 45.0%
TGATCCATTCCTTGGTTGGT+AGG + chr4_1:79958127-79958146 Msa0575960:intron 45.0%
TCATGCTTATGCCTAGGGAT+GGG - chr4_1:79958167-79958186 None:intergenic 45.0%
GTCTCTCATGCTTATGCCTA+GGG - chr4_1:79958172-79958191 None:intergenic 45.0%
AGTCTCTCATGCTTATGCCT+AGG - chr4_1:79958173-79958192 None:intergenic 45.0%
AAGCATGAGAGACTCTCTGT+TGG + chr4_1:79958179-79958198 Msa0575960:CDS 45.0%
TTATGAGAAGAGTCTGGGTC+TGG - chr4_1:79958275-79958294 None:intergenic 45.0%
ACAAGATCGGTGGATGTTGT+AGG - chr4_1:79958455-79958474 None:intergenic 45.0%
CCTGTACAAAACAAGATCGG+TGG - chr4_1:79958465-79958484 None:intergenic 45.0%
!!! CCACCGATCTTGTTTTGTAC+AGG + chr4_1:79958462-79958481 Msa0575960:CDS 45.0%
CTGAGGTCAAGGCAAATGAA+AGG + chr4_1:79958576-79958595 Msa0575960:CDS 45.0%
AGGTCAAGGCAAATGAAAGG+AGG + chr4_1:79958579-79958598 Msa0575960:CDS 45.0%
AAATGAAAGGAGGACAGCTC+TGG + chr4_1:79958589-79958608 Msa0575960:CDS 45.0%
! GTTGCATCTGGGGTTATAGA+GGG - chr4_1:79958674-79958693 None:intergenic 45.0%
! AGTTGCATCTGGGGTTATAG+AGG - chr4_1:79958675-79958694 None:intergenic 45.0%
TCTATAACCCCAGATGCAAC+TGG + chr4_1:79958674-79958693 Msa0575960:CDS 45.0%
! GAATGAGAGCCAAGTGGTTT+TGG - chr4_1:79958772-79958791 None:intergenic 45.0%
! AACCACTTGGCTCTCATTCT+TGG + chr4_1:79958773-79958792 Msa0575960:CDS 45.0%
TACCAAGAATGAGAGCCAAG+TGG - chr4_1:79958778-79958797 None:intergenic 45.0%
! CTCATTCTTGGTAACAGAGC+AGG + chr4_1:79958785-79958804 Msa0575960:CDS 45.0%
ATTGTGGATGATGCAAGACC+TGG + chr4_1:79958974-79958993 Msa0575960:CDS 45.0%
CTTCAGGATGAGATGTCACT+TGG - chr4_1:79959018-79959037 None:intergenic 45.0%
ATACCATAGCCAAATCCACC+AGG - chr4_1:79959070-79959089 None:intergenic 45.0%
ACATAGTTACGCAACCTGGT+CGG - chr4_1:79959097-79959116 None:intergenic 45.0%
CATCACATAGTTACGCAACC+TGG - chr4_1:79959101-79959120 None:intergenic 45.0%
!! AAGCACACAGAGGCATTGTT+TGG + chr4_1:79959190-79959209 Msa0575960:CDS 45.0%
ATTGTTTGGAAGACCCGGAA+TGG + chr4_1:79959204-79959223 Msa0575960:CDS 45.0%
TCACGTGTGATAACCATTCC+GGG - chr4_1:79959220-79959239 None:intergenic 45.0%
CTCACGTGTGATAACCATTC+CGG - chr4_1:79959221-79959240 None:intergenic 45.0%
GGAATGGTTATCACACGTGA+GGG + chr4_1:79959220-79959239 Msa0575960:CDS 45.0%
GAATGGTTATCACACGTGAG+GGG + chr4_1:79959221-79959240 Msa0575960:CDS 45.0%
AATGGTTATCACACGTGAGG+GGG + chr4_1:79959222-79959241 Msa0575960:CDS 45.0%
!! TAATATAAATAAATAATTCT+CGG - chr4_1:79957641-79957660 None:intergenic 5.0%
!! ATAAATTAATTAATAATAAC+TGG - chr4_1:79959519-79959538 None:intergenic 5.0%
!! TAATATAAATAAATAATTCT+CGG - chr4_1:79957641-79957660 None:intergenic 5.0%
!! ATAAATTAATTAATAATAAC+TGG - chr4_1:79959519-79959538 None:intergenic 5.0%
AAGAAGACGGCGGTGATAAG+AGG - chr4_1:79957834-79957853 None:intergenic 50.0%
CACACCTACCAACCAAGGAA+TGG - chr4_1:79958134-79958153 None:intergenic 50.0%
AAGTGCACACCTACCAACCA+AGG - chr4_1:79958139-79958158 None:intergenic 50.0%
CATGCTTATGCCTAGGGATG+GGG - chr4_1:79958166-79958185 None:intergenic 50.0%
CTCATGCTTATGCCTAGGGA+TGG - chr4_1:79958168-79958187 None:intergenic 50.0%
ATTGGAGCTGGAGAAGTTGC+TGG - chr4_1:79958388-79958407 None:intergenic 50.0%
CATCACGATCAGATTGGAGC+TGG - chr4_1:79958400-79958419 None:intergenic 50.0%
GAGCAGCATCACGATCAGAT+TGG - chr4_1:79958406-79958425 None:intergenic 50.0%
TCGGTGGATGTTGTAGGAGA+AGG - chr4_1:79958449-79958468 None:intergenic 50.0%
CAGGAGAATTGCTGAGGTCA+AGG + chr4_1:79958565-79958584 Msa0575960:intron 50.0%
TAACCCCAGATGCAACTGGT+AGG + chr4_1:79958678-79958697 Msa0575960:CDS 50.0%
AACCCCAGATGCAACTGGTA+GGG + chr4_1:79958679-79958698 Msa0575960:CDS 50.0%
! CAACTGGTAGGGTCGATTCA+TGG + chr4_1:79958690-79958709 Msa0575960:CDS 50.0%
TAGCAAACTGAGGATAGGGC+AGG + chr4_1:79958832-79958851 Msa0575960:CDS 50.0%
AGTTGACCAAAGGTTCCAGC+TGG + chr4_1:79958895-79958914 Msa0575960:CDS 50.0%
ACTTCTCCAGCTGGAACCTT+TGG - chr4_1:79958904-79958923 None:intergenic 50.0%
!! CTTTCATCGACTTCTCCAGC+TGG - chr4_1:79958913-79958932 None:intergenic 50.0%
! TGCAAGACCTGGTAGTGAAG+TGG + chr4_1:79958985-79959004 Msa0575960:CDS 50.0%
! GAAGTGTCCACTTCACTACC+AGG - chr4_1:79958995-79959014 None:intergenic 50.0%
CCAGGCCAAGTAGATACTTC+AGG - chr4_1:79959034-79959053 None:intergenic 50.0%
! CCTGAAGTATCTACTTGGCC+TGG + chr4_1:79959031-79959050 Msa0575960:CDS 50.0%
! GAAGTATCTACTTGGCCTGG+TGG + chr4_1:79959034-79959053 Msa0575960:CDS 50.0%
!! GATGTCAGTCCTGGTGGATT+TGG + chr4_1:79959058-79959077 Msa0575960:CDS 50.0%
!! AGTCCTGGTGGATTTGGCTA+TGG + chr4_1:79959064-79959083 Msa0575960:CDS 50.0%
GCTATGGTATAAAGCCGACC+AGG + chr4_1:79959080-79959099 Msa0575960:CDS 50.0%
!! GAGGCATTGTTTGGAAGACC+CGG + chr4_1:79959199-79959218 Msa0575960:CDS 50.0%
CGGAATGGTTATCACACGTG+AGG + chr4_1:79959219-79959238 Msa0575960:CDS 50.0%
AATGCCTTCGAACATGTGGG+AGG - chr4_1:79959400-79959419 None:intergenic 50.0%
AAGAAGACGGCGGTGATAAG+AGG - chr4_1:79957834-79957853 None:intergenic 50.0%
CACACCTACCAACCAAGGAA+TGG - chr4_1:79958134-79958153 None:intergenic 50.0%
AAGTGCACACCTACCAACCA+AGG - chr4_1:79958139-79958158 None:intergenic 50.0%
CATGCTTATGCCTAGGGATG+GGG - chr4_1:79958166-79958185 None:intergenic 50.0%
CTCATGCTTATGCCTAGGGA+TGG - chr4_1:79958168-79958187 None:intergenic 50.0%
ATTGGAGCTGGAGAAGTTGC+TGG - chr4_1:79958388-79958407 None:intergenic 50.0%
CATCACGATCAGATTGGAGC+TGG - chr4_1:79958400-79958419 None:intergenic 50.0%
GAGCAGCATCACGATCAGAT+TGG - chr4_1:79958406-79958425 None:intergenic 50.0%
TCGGTGGATGTTGTAGGAGA+AGG - chr4_1:79958449-79958468 None:intergenic 50.0%
CAGGAGAATTGCTGAGGTCA+AGG + chr4_1:79958565-79958584 Msa0575960:intron 50.0%
TAACCCCAGATGCAACTGGT+AGG + chr4_1:79958678-79958697 Msa0575960:CDS 50.0%
AACCCCAGATGCAACTGGTA+GGG + chr4_1:79958679-79958698 Msa0575960:CDS 50.0%
! CAACTGGTAGGGTCGATTCA+TGG + chr4_1:79958690-79958709 Msa0575960:CDS 50.0%
TAGCAAACTGAGGATAGGGC+AGG + chr4_1:79958832-79958851 Msa0575960:CDS 50.0%
AGTTGACCAAAGGTTCCAGC+TGG + chr4_1:79958895-79958914 Msa0575960:CDS 50.0%
ACTTCTCCAGCTGGAACCTT+TGG - chr4_1:79958904-79958923 None:intergenic 50.0%
!! CTTTCATCGACTTCTCCAGC+TGG - chr4_1:79958913-79958932 None:intergenic 50.0%
! TGCAAGACCTGGTAGTGAAG+TGG + chr4_1:79958985-79959004 Msa0575960:CDS 50.0%
! GAAGTGTCCACTTCACTACC+AGG - chr4_1:79958995-79959014 None:intergenic 50.0%
CCAGGCCAAGTAGATACTTC+AGG - chr4_1:79959034-79959053 None:intergenic 50.0%
! CCTGAAGTATCTACTTGGCC+TGG + chr4_1:79959031-79959050 Msa0575960:CDS 50.0%
! GAAGTATCTACTTGGCCTGG+TGG + chr4_1:79959034-79959053 Msa0575960:CDS 50.0%
!! GATGTCAGTCCTGGTGGATT+TGG + chr4_1:79959058-79959077 Msa0575960:CDS 50.0%
!! AGTCCTGGTGGATTTGGCTA+TGG + chr4_1:79959064-79959083 Msa0575960:CDS 50.0%
GCTATGGTATAAAGCCGACC+AGG + chr4_1:79959080-79959099 Msa0575960:CDS 50.0%
!! GAGGCATTGTTTGGAAGACC+CGG + chr4_1:79959199-79959218 Msa0575960:CDS 50.0%
CGGAATGGTTATCACACGTG+AGG + chr4_1:79959219-79959238 Msa0575960:CDS 50.0%
AATGCCTTCGAACATGTGGG+AGG - chr4_1:79959400-79959419 None:intergenic 50.0%
CTAACCTAGCCGTATGGACG+TGG + chr4_1:79957792-79957811 Msa0575960:exon 55.0%
TGATAAGAGGAGGACGGCTG+TGG - chr4_1:79957821-79957840 None:intergenic 55.0%
AAGACGGCGGTGATAAGAGG+AGG - chr4_1:79957831-79957850 None:intergenic 55.0%
AGGAAAGTGAAGAAGGCGGC+AGG - chr4_1:79957872-79957891 None:intergenic 55.0%
CTTATGCCTAGGGATGGGGA+CGG - chr4_1:79958162-79958181 None:intergenic 55.0%
GACCCTACCAGTTGCATCTG+GGG - chr4_1:79958684-79958703 None:intergenic 55.0%
CGACCCTACCAGTTGCATCT+GGG - chr4_1:79958685-79958704 None:intergenic 55.0%
TCGACCCTACCAGTTGCATC+TGG - chr4_1:79958686-79958705 None:intergenic 55.0%
!! CTGGAGGGTATCACCGTCAA+AGG - chr4_1:79959125-79959144 None:intergenic 55.0%
CTGGGATGTTGAGAGCTACG+TGG + chr4_1:79959336-79959355 Msa0575960:CDS 55.0%
TTGAGAGCTACGTGGACTCG+AGG + chr4_1:79959344-79959363 Msa0575960:CDS 55.0%
GCATCCTCCCACATGTTCGA+AGG + chr4_1:79959393-79959412 Msa0575960:three_prime_UTR 55.0%
CTAACCTAGCCGTATGGACG+TGG + chr4_1:79957792-79957811 Msa0575960:exon 55.0%
TGATAAGAGGAGGACGGCTG+TGG - chr4_1:79957821-79957840 None:intergenic 55.0%
AAGACGGCGGTGATAAGAGG+AGG - chr4_1:79957831-79957850 None:intergenic 55.0%
AGGAAAGTGAAGAAGGCGGC+AGG - chr4_1:79957872-79957891 None:intergenic 55.0%
CTTATGCCTAGGGATGGGGA+CGG - chr4_1:79958162-79958181 None:intergenic 55.0%
GACCCTACCAGTTGCATCTG+GGG - chr4_1:79958684-79958703 None:intergenic 55.0%
CGACCCTACCAGTTGCATCT+GGG - chr4_1:79958685-79958704 None:intergenic 55.0%
TCGACCCTACCAGTTGCATC+TGG - chr4_1:79958686-79958705 None:intergenic 55.0%
!! CTGGAGGGTATCACCGTCAA+AGG - chr4_1:79959125-79959144 None:intergenic 55.0%
CTGGGATGTTGAGAGCTACG+TGG + chr4_1:79959336-79959355 Msa0575960:CDS 55.0%
TTGAGAGCTACGTGGACTCG+AGG + chr4_1:79959344-79959363 Msa0575960:CDS 55.0%
GCATCCTCCCACATGTTCGA+AGG + chr4_1:79959393-79959412 Msa0575960:three_prime_UTR 55.0%
CTGTGGCTGCCACGTCCATA+CGG - chr4_1:79957804-79957823 None:intergenic 60.0%
CGGCGGTGATAAGAGGAGGA+CGG - chr4_1:79957827-79957846 None:intergenic 60.0%
AGAAGAGTCTGGGTCTGGCG+AGG - chr4_1:79958270-79958289 None:intergenic 60.0%
ACCGCAGCAGGCACAAGATG+GGG - chr4_1:79958362-79958381 None:intergenic 60.0%
CACCGCAGCAGGCACAAGAT+GGG - chr4_1:79958363-79958382 None:intergenic 60.0%
CTGTGGCTGCCACGTCCATA+CGG - chr4_1:79957804-79957823 None:intergenic 60.0%
CGGCGGTGATAAGAGGAGGA+CGG - chr4_1:79957827-79957846 None:intergenic 60.0%
AGAAGAGTCTGGGTCTGGCG+AGG - chr4_1:79958270-79958289 None:intergenic 60.0%
ACCGCAGCAGGCACAAGATG+GGG - chr4_1:79958362-79958381 None:intergenic 60.0%
CACCGCAGCAGGCACAAGAT+GGG - chr4_1:79958363-79958382 None:intergenic 60.0%
GCTGCCACGTCCATACGGCT+AGG - chr4_1:79957799-79957818 None:intergenic 65.0%
GCACTTCCGTCCCCATCCCT+AGG + chr4_1:79958153-79958172 Msa0575960:CDS 65.0%
TGGGTCTGGCGAGGAGGAAG+AGG - chr4_1:79958261-79958280 None:intergenic 65.0%
AGAGTCTGGGTCTGGCGAGG+AGG - chr4_1:79958267-79958286 None:intergenic 65.0%
CCGCAGCAGGCACAAGATGG+GGG - chr4_1:79958361-79958380 None:intergenic 65.0%
CCCCCATCTTGTGCCTGCTG+CGG + chr4_1:79958358-79958377 Msa0575960:CDS 65.0%
CCACCGCAGCAGGCACAAGA+TGG - chr4_1:79958364-79958383 None:intergenic 65.0%
CCATCTTGTGCCTGCTGCGG+TGG + chr4_1:79958361-79958380 Msa0575960:CDS 65.0%
AGTTGCTGGTCCACCGCAGC+AGG - chr4_1:79958374-79958393 None:intergenic 65.0%
CCAGGACTGACATCGCCACC+AGG - chr4_1:79959052-79959071 None:intergenic 65.0%
! CCTGGTGGCGATGTCAGTCC+TGG + chr4_1:79959049-79959068 Msa0575960:CDS 65.0%
GGTGGCGATGTCAGTCCTGG+TGG + chr4_1:79959052-79959071 Msa0575960:CDS 65.0%
GCTGCCACGTCCATACGGCT+AGG - chr4_1:79957799-79957818 None:intergenic 65.0%
GCACTTCCGTCCCCATCCCT+AGG + chr4_1:79958153-79958172 Msa0575960:CDS 65.0%
TGGGTCTGGCGAGGAGGAAG+AGG - chr4_1:79958261-79958280 None:intergenic 65.0%
AGAGTCTGGGTCTGGCGAGG+AGG - chr4_1:79958267-79958286 None:intergenic 65.0%
CCGCAGCAGGCACAAGATGG+GGG - chr4_1:79958361-79958380 None:intergenic 65.0%
CCCCCATCTTGTGCCTGCTG+CGG + chr4_1:79958358-79958377 Msa0575960:CDS 65.0%
CCACCGCAGCAGGCACAAGA+TGG - chr4_1:79958364-79958383 None:intergenic 65.0%
CCATCTTGTGCCTGCTGCGG+TGG + chr4_1:79958361-79958380 Msa0575960:CDS 65.0%
AGTTGCTGGTCCACCGCAGC+AGG - chr4_1:79958374-79958393 None:intergenic 65.0%
CCAGGACTGACATCGCCACC+AGG - chr4_1:79959052-79959071 None:intergenic 65.0%
! CCTGGTGGCGATGTCAGTCC+TGG + chr4_1:79959049-79959068 Msa0575960:CDS 65.0%
GGTGGCGATGTCAGTCCTGG+TGG + chr4_1:79959052-79959071 Msa0575960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 79957630 79959731 79957630 ID=Msa0575960;Name=Msa0575960
chr4_1 mRNA 79957630 79959731 79957630 ID=Msa0575960-mRNA-1;Parent=Msa0575960;Name=Msa0575960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=175|1|1|1|1|1|3|344|418
chr4_1 exon 79957630 79957906 79957630 ID=Msa0575960-mRNA-1:exon:28530;Parent=Msa0575960-mRNA-1
chr4_1 exon 79958149 79958483 79958149 ID=Msa0575960-mRNA-1:exon:28531;Parent=Msa0575960-mRNA-1
chr4_1 exon 79958568 79959731 79958568 ID=Msa0575960-mRNA-1:exon:28532;Parent=Msa0575960-mRNA-1
chr4_1 five_prime_UTR 79957630 79957804 79957630 ID=Msa0575960-mRNA-1:five_prime_utr;Parent=Msa0575960-mRNA-1
chr4_1 CDS 79957805 79957906 79957805 ID=Msa0575960-mRNA-1:cds;Parent=Msa0575960-mRNA-1
chr4_1 CDS 79958149 79958483 79958149 ID=Msa0575960-mRNA-1:cds;Parent=Msa0575960-mRNA-1
chr4_1 CDS 79958568 79959387 79958568 ID=Msa0575960-mRNA-1:cds;Parent=Msa0575960-mRNA-1
chr4_1 three_prime_UTR 79959388 79959731 79959388 ID=Msa0575960-mRNA-1:three_prime_utr;Parent=Msa0575960-mRNA-1
Gene Sequence

>Msa0575960

ATGGACGTGGCAGCCACAGCCGTCCTCCTCTTATCACCGCCGTCTTCTTCAATTACAATCGGATCCTGCCGCCTTCTTCACTTTCCTCCTTCTAATAATAAGGTGTGCACTTCCGTCCCCATCCCTAGGCATAAGCATGAGAGACTCTCTGTTGGAATTGCTACAAATACGATAGCAAGAAGAAGAAGCTTTGTAGTTAGAGCAGCAACATCCTCTTCCTCCTCGCCAGACCCAGACTCTTCTCATAAGATTGCACCTCTTCAGTTTCAGTCTCCAATCGGTCAGTTTCTTTCTCAGATTTTGATCAATCACCCCCATCTTGTGCCTGCTGCGGTGGACCAGCAACTTCTCCAGCTCCAATCTGATCGTGATGCTGCTCATCACCAACAAAACCAAGATCCTTCTCCTACAACATCCACCGATCTTGTTTTGTACAGGAGAATTGCTGAGGTCAAGGCAAATGAAAGGAGGACAGCTCTGGAAGAGATCTTGTACACATTGGTTGTGCAAAAGTTCATGGATGCTAATATTTCTTTGATACCCTCTATAACCCCAGATGCAACTGGTAGGGTCGATTCATGGTCAAATGAAGATGGGAAACTTGAGCAGCTTCACTCAAACGAAGCATATGAGATGATCCAAAACCACTTGGCTCTCATTCTTGGTAACAGAGCAGGAGATCTATCCTCCGTTGCTCAAATTAGCAAACTGAGGATAGGGCAGGTCTATGCAGCATCAGTGATGTATGGTTACTTTCTTAAGCGAGTTGACCAAAGGTTCCAGCTGGAGAAGTCGATGAAAGTTCTTACAAGTGCACCAGACGACAGTAGTATTCATCAAACTATTGTGGATGATGCAAGACCTGGTAGTGAAGTGGACACTTCCCAAGTGACATCTCATCCTGAAGTATCTACTTGGCCTGGTGGCGATGTCAGTCCTGGTGGATTTGGCTATGGTATAAAGCCGACCAGGTTGCGTAACTATGTGATGTCCTTTGACGGTGATACCCTCCAGAGATACGCAACAATAAGATCTAAGGAGGCCGTGAGCATTATTGAGAAGCACACAGAGGCATTGTTTGGAAGACCCGGAATGGTTATCACACGTGAGGGGGCAATTGATTATTCAAAGGATGAAACCATCAAAATTAGCTTTGGTGGTTTAAGGAGACTTGTTTTAGAGGCTGTGACTTTTGGTTGTTTTCTCTGGGATGTTGAGAGCTACGTGGACTCGAGGTACCATTTCGTCTTAAATTGA

Protein sequence

>Msa0575960

MDVAATAVLLLSPPSSSITIGSCRLLHFPPSNNKVCTSVPIPRHKHERLSVGIATNTIARRRSFVVRAATSSSSSPDPDSSHKIAPLQFQSPIGQFLSQILINHPHLVPAAVDQQLLQLQSDRDAAHHQQNQDPSPTTSTDLVLYRRIAEVKANERRTALEEILYTLVVQKFMDANISLIPSITPDATGRVDSWSNEDGKLEQLHSNEAYEMIQNHLALILGNRAGDLSSVAQISKLRIGQVYAASVMYGYFLKRVDQRFQLEKSMKVLTSAPDDSSIHQTIVDDARPGSEVDTSQVTSHPEVSTWPGGDVSPGGFGYGIKPTRLRNYVMSFDGDTLQRYATIRSKEAVSIIEKHTEALFGRPGMVITREGAIDYSKDETIKISFGGLRRLVLEAVTFGCFLWDVESYVDSRYHFVLN*