Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0503040 | XP_003599680.1 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 882 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0503040 | sp|O81027|HMGCL_ARATH | 72.581 | 434 | 117 | 2 | 1 | 433 | 36 | 468 | 0.0 | 649 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0503040 | G7IZR1 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 882 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0396640 | Msa0503040 | 0.827661 | 1.383100e-54 | -8.615850e-47 |
Msa0403290 | Msa0503040 | 0.836821 | 7.474453e-57 | -8.615850e-47 |
Msa0444170 | Msa0503040 | 0.832766 | 7.840153e-56 | -8.615850e-47 |
Msa0449880 | Msa0503040 | 0.946486 | 4.214002e-105 | -8.615850e-47 |
Msa0264960 | Msa0503040 | 0.833021 | 6.773067e-56 | -8.615850e-47 |
Msa0303010 | Msa0503040 | 0.834171 | 3.497605e-56 | -8.615850e-47 |
Msa0350070 | Msa0503040 | 0.839426 | 1.596391e-57 | -8.615850e-47 |
Msa0357050 | Msa0503040 | 0.908877 | 1.056790e-81 | -8.615850e-47 |
Msa0491730 | Msa0503040 | 0.842009 | 3.359493e-58 | -8.615850e-47 |
Msa0503040 | Msa0575960 | 0.802885 | 4.536955e-49 | -8.615850e-47 |
Msa0503040 | Msa1085570 | 0.803525 | 3.344640e-49 | -8.615850e-47 |
Msa0503040 | Msa1434710 | 0.832214 | 1.074121e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0503040 | MtrunA17_Chr3g0093871 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 882 |
Msa0503040 | MtrunA17_Chr7g0255931 | 72.699 | 326 | 88 | 1 | 109 | 433 | 77 | 402 | 1.96e-172 | 488 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0503040 | AT2G26800.1 | 72.581 | 434 | 117 | 2 | 1 | 433 | 1 | 433 | 0.0 | 649 |
Msa0503040 | AT2G26800.2 | 72.581 | 434 | 117 | 2 | 1 | 433 | 36 | 468 | 0.0 | 649 |
Msa0503040 | AT2G26800.4 | 72.581 | 434 | 117 | 2 | 1 | 433 | 36 | 468 | 0.0 | 649 |
Msa0503040 | AT2G26800.5 | 72.032 | 379 | 105 | 1 | 56 | 433 | 10 | 388 | 0.0 | 564 |
Msa0503040 | AT2G26800.3 | 68.038 | 316 | 100 | 1 | 1 | 316 | 36 | 350 | 2.32e-155 | 444 |
Find 137 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCAAATTCCCCAATTTCT+AGG | 0.187583 | 3_4:-45925725 | Msa0503040:five_prime_UTR |
GATAGTTGCACCTTTAAATT+AGG | 0.211209 | 3_4:+45923252 | None:intergenic |
TTATACGAAACCCTAGAAAT+TGG | 0.216324 | 3_4:+45925714 | None:intergenic |
AGTTCTGACTCCTAATTTAA+AGG | 0.233362 | 3_4:-45923262 | Msa0503040:intron |
CACCGTAGTTCCAATGCTTT+TGG | 0.246522 | 3_4:-45921928 | Msa0503040:CDS |
TGGAGGGAGACAAGAATATT+TGG | 0.260470 | 3_4:+45921837 | None:intergenic |
AGCTAAAGCACTATATGATA+TGG | 0.269941 | 3_4:-45922437 | Msa0503040:CDS |
AAGCAGTTGGGGCGCCCCTC+TGG | 0.273848 | 3_4:-45921210 | Msa0503040:CDS |
GGGAGAAACACGATGAAATT+TGG | 0.278565 | 3_4:-45924243 | Msa0503040:CDS |
TTTGAAGCTGCTGTTGCTGC+TGG | 0.278986 | 3_4:-45923164 | Msa0503040:CDS |
CATGCAAGATATGGCATATA+AGG | 0.283069 | 3_4:-45924157 | Msa0503040:intron |
ATCAAAACCAACGTTGATAT+TGG | 0.285460 | 3_4:-45921264 | Msa0503040:CDS |
TTTACAGAATACCTTCAAAA+TGG | 0.293301 | 3_4:+45920787 | None:intergenic |
CCACTTCACCATGTCAAGTT+TGG | 0.300052 | 3_4:-45924690 | Msa0503040:exon |
CCGTCCACAAGTAGATAATT+TGG | 0.313604 | 3_4:-45924591 | Msa0503040:CDS |
GACTTCATCGGCAAGCAGTT+GGG | 0.324564 | 3_4:-45921222 | Msa0503040:CDS |
GGAGGAACTGGTCCTTCAAC+TGG | 0.330205 | 3_4:+45922478 | None:intergenic |
AACTGGAATTGAGAGCTCTT+TGG | 0.334848 | 3_4:+45923031 | None:intergenic |
CTCCCTGTGGTCATAGTCCT+TGG | 0.337045 | 3_4:+45924261 | None:intergenic |
TATACGAAACCCTAGAAATT+GGG | 0.347105 | 3_4:+45925715 | None:intergenic |
GATTCTTCAGTTGCTGGTCT+TGG | 0.351386 | 3_4:-45921363 | Msa0503040:CDS |
GCTGTGGATTCTTCAGTTGC+TGG | 0.359338 | 3_4:-45921369 | Msa0503040:CDS |
ATCTCACTTGGTGACACAAT+TGG | 0.361351 | 3_4:-45922403 | Msa0503040:CDS |
GAGAAGCTTGCATTTGCTAT+TGG | 0.363951 | 3_4:+45920953 | None:intergenic |
TCTCACTTGGTGACACAATT+GGG | 0.372918 | 3_4:-45922402 | Msa0503040:CDS |
AAGAAGAACGCGAAGAATAA+AGG | 0.384110 | 3_4:+45925784 | None:intergenic |
TATACCTGTGGGACCCATTT+GGG | 0.388962 | 3_4:+45923779 | None:intergenic |
TAACAAAGACATGCAAGATA+TGG | 0.395825 | 3_4:-45924166 | Msa0503040:CDS |
CGTCCACAAGTAGATAATTT+GGG | 0.396400 | 3_4:-45924590 | Msa0503040:CDS |
CATCAGCAGTGACTCGGTTA+AGG | 0.398712 | 3_4:+45921169 | None:intergenic |
CTGGCAATCTGATGCCTCTC+AGG | 0.410598 | 3_4:+45923283 | None:intergenic |
ATTCATAGACTAGCATCTAC+TGG | 0.414544 | 3_4:-45923836 | Msa0503040:CDS |
TTCAAATTCCCCAATTTCTA+GGG | 0.419100 | 3_4:-45925724 | Msa0503040:five_prime_UTR |
ATATACCTGTGGGACCCATT+TGG | 0.423740 | 3_4:+45923778 | None:intergenic |
CAAAATGCATACCCTCGAAC+TGG | 0.425699 | 3_4:+45923014 | None:intergenic |
AATTCAATCTTTACATCTGT+TGG | 0.426921 | 3_4:+45923860 | None:intergenic |
TGAAGAAAACGTTGAGGGAT+AGG | 0.427797 | 3_4:+45925689 | None:intergenic |
CGACTTCATCGGCAAGCAGT+TGG | 0.429165 | 3_4:-45921223 | Msa0503040:CDS |
ATATAGATGTTATCATATCT+TGG | 0.438779 | 3_4:+45921143 | None:intergenic |
TCTTCAGTTGCTGGTCTTGG+TGG | 0.441483 | 3_4:-45921360 | Msa0503040:CDS |
ACAAGTAGATAATTTGGGTA+TGG | 0.441687 | 3_4:-45924585 | Msa0503040:CDS |
TCCACTCACGTTGATGAGTT+AGG | 0.442451 | 3_4:-45920998 | Msa0503040:three_prime_UTR |
GGTGGCTGTCCATATGCTAA+GGG | 0.446426 | 3_4:-45921342 | Msa0503040:CDS |
TGGTGGCTGTCCATATGCTA+AGG | 0.451026 | 3_4:-45921343 | Msa0503040:CDS |
AAATAAATGAATAAGTTAGT+TGG | 0.460674 | 3_4:+45925838 | None:intergenic |
TTAGTTGGTTGGTGAGGGGA+TGG | 0.465921 | 3_4:+45925853 | None:intergenic |
ATCAGCAGTGACTCGGTTAA+GGG | 0.471542 | 3_4:+45921170 | None:intergenic |
TTTGAAGGTATTCTGTAAAG+TGG | 0.472562 | 3_4:-45920783 | Msa0503040:three_prime_UTR |
ATAAGTTAGTTGGTTGGTGA+GGG | 0.475102 | 3_4:+45925848 | None:intergenic |
ATGGGAAACTGCTTTATTGA+AGG | 0.479991 | 3_4:-45924566 | Msa0503040:CDS |
GCCATTACAGCCAAAAGCAT+TGG | 0.482879 | 3_4:+45921918 | None:intergenic |
ACAATTGGGGTAGGCACGCC+AGG | 0.486021 | 3_4:-45922388 | Msa0503040:intron |
AAGTTAGCTGGACACGACTA+AGG | 0.486476 | 3_4:+45920692 | None:intergenic |
TTTGTTAAGATAGTTGAAGT+TGG | 0.487269 | 3_4:-45923920 | Msa0503040:CDS |
TTTAAATTAGGAGTCAGAAC+TGG | 0.489900 | 3_4:+45923264 | None:intergenic |
GCTAAAGCACTATATGATAT+GGG | 0.494567 | 3_4:-45922436 | Msa0503040:CDS |
ATGATGTATAGTTAGCTATA+CGG | 0.495826 | 3_4:-45920877 | Msa0503040:three_prime_UTR |
GAAGAAAACGTTGAGGGATA+GGG | 0.496510 | 3_4:+45925690 | None:intergenic |
GAGCTCTCAATTCCAGTTCG+AGG | 0.500214 | 3_4:-45923026 | Msa0503040:CDS |
CAAGTAGATAATTTGGGTAT+GGG | 0.504928 | 3_4:-45924584 | Msa0503040:CDS |
AGAGTTCAGAGGTTCTCATC+TGG | 0.505085 | 3_4:-45924620 | Msa0503040:CDS |
CCGAAACATACCCTTGGAAA+AGG | 0.505637 | 3_4:-45924320 | Msa0503040:CDS |
AATAAGTTAGTTGGTTGGTG+AGG | 0.508433 | 3_4:+45925847 | None:intergenic |
CTGTCCATGGTACTCATGCT+TGG | 0.511693 | 3_4:+45924641 | None:intergenic |
ACTTCATCGGCAAGCAGTTG+GGG | 0.512566 | 3_4:-45921221 | Msa0503040:CDS |
ATCCAGGTGATTCAACCAAT+GGG | 0.512862 | 3_4:-45921088 | Msa0503040:three_prime_UTR |
ATTGGAAAGCTCATGTCAGC+TGG | 0.513314 | 3_4:-45921246 | Msa0503040:CDS |
ATCCCATTGGTTGAATCACC+TGG | 0.521698 | 3_4:+45921086 | None:intergenic |
TATCCAGGTGATTCAACCAA+TGG | 0.525894 | 3_4:-45921089 | Msa0503040:three_prime_UTR |
TCAACTATCTTAACAAACTC+AGG | 0.528412 | 3_4:+45923926 | None:intergenic |
CTTCACCATGTCAAGTTTGG+AGG | 0.529375 | 3_4:-45924687 | Msa0503040:exon |
AGCCAAAAGCATTGGAACTA+CGG | 0.530502 | 3_4:+45921926 | None:intergenic |
ATCTCCCAAATGGGTCCCAC+AGG | 0.534715 | 3_4:-45923783 | Msa0503040:intron |
GTCCACTTTCATGACACATA+CGG | 0.536770 | 3_4:-45921870 | Msa0503040:CDS |
TCCACTTTCATGACACATAC+GGG | 0.541191 | 3_4:-45921869 | Msa0503040:CDS |
AGAATTGAAGAAAACGTTGA+GGG | 0.546967 | 3_4:+45925684 | None:intergenic |
GATGTTGTGTACATGCTGAA+TGG | 0.548740 | 3_4:-45921294 | Msa0503040:CDS |
ACGAGTGACAGCTCGATAGC+GGG | 0.549034 | 3_4:+45923058 | None:intergenic |
GTTGTTGGATGCCCAGTTGA+AGG | 0.549854 | 3_4:-45922490 | Msa0503040:CDS |
AAATGAATAAGTTAGTTGGT+TGG | 0.550498 | 3_4:+45925842 | None:intergenic |
GTTGAAGTTGGACCAAGGGA+TGG | 0.550966 | 3_4:-45923908 | Msa0503040:CDS |
TCATGCTTGGCAACTTGTCA+TGG | 0.551089 | 3_4:+45924654 | None:intergenic |
TATTTGTTAACTTACTTGGA+GGG | 0.551242 | 3_4:+45921821 | None:intergenic |
ATACCCAAATTATCTACTTG+TGG | 0.551302 | 3_4:+45924587 | None:intergenic |
GTGTACATGCTGAATGGACT+TGG | 0.556574 | 3_4:-45921288 | Msa0503040:CDS |
ATGTCAGCTGGCGACTTCAT+CGG | 0.556641 | 3_4:-45921234 | Msa0503040:CDS |
GCCCGTATGTGTCATGAAAG+TGG | 0.558059 | 3_4:+45921868 | None:intergenic |
TTCATAGACTAGCATCTACT+GGG | 0.564553 | 3_4:-45923835 | Msa0503040:CDS |
AGTGACTCGGTTAAGGGCAA+TGG | 0.564612 | 3_4:+45921176 | None:intergenic |
TACTGGGTTATCTGTCATTG+AGG | 0.564876 | 3_4:-45923819 | Msa0503040:CDS |
TCAAGTTTGGAGGAGCCACT+TGG | 0.565206 | 3_4:-45924677 | Msa0503040:CDS |
GGAGACAAGAATATTTGGAA+GGG | 0.565627 | 3_4:+45921842 | None:intergenic |
GGGAGACAAGAATATTTGGA+AGG | 0.577919 | 3_4:+45921841 | None:intergenic |
ATGGCAGTCTTTGAGCCAGA+GGG | 0.579520 | 3_4:+45921195 | None:intergenic |
GGTTGTTTCGAAATCTCACT+TGG | 0.579694 | 3_4:-45922415 | Msa0503040:CDS |
GATAGTTGAAGTTGGACCAA+GGG | 0.581744 | 3_4:-45923912 | Msa0503040:CDS |
TGGACTGAAAGAGTCACCTC+GGG | 0.587158 | 3_4:+45924281 | None:intergenic |
ATACGAAACCCTAGAAATTG+GGG | 0.587254 | 3_4:+45925716 | None:intergenic |
CATATAGAATGATATCCCAT+TGG | 0.589144 | 3_4:+45921073 | None:intergenic |
TGTGCAATGCAGTTTATGAA+AGG | 0.589993 | 3_4:-45923953 | Msa0503040:intron |
GAGCTTTCCAATATCAACGT+TGG | 0.590179 | 3_4:+45921257 | None:intergenic |
AGCTCTCAATTCCAGTTCGA+GGG | 0.594177 | 3_4:-45923025 | Msa0503040:intron |
AAGAATTGAAGAAAACGTTG+AGG | 0.595942 | 3_4:+45925683 | None:intergenic |
GAGGAACTGGTCCTTCAACT+GGG | 0.597731 | 3_4:+45922479 | None:intergenic |
GTGGCTGTCCATATGCTAAG+GGG | 0.598484 | 3_4:-45921341 | Msa0503040:CDS |
TGGAAGCATCAGCAGTGACT+CGG | 0.600270 | 3_4:+45921163 | None:intergenic |
CCAAATTATCTACTTGTGGA+CGG | 0.600561 | 3_4:+45924591 | None:intergenic |
ATACACAACTTAATGCATGA+TGG | 0.601030 | 3_4:+45920898 | None:intergenic |
CACGAGTGACAGCTCGATAG+CGG | 0.601591 | 3_4:+45923057 | None:intergenic |
TTTCATCGTGTTTCTCCCTG+TGG | 0.602715 | 3_4:+45924248 | None:intergenic |
GGCAACTTGTCATGGCCAAG+TGG | 0.604188 | 3_4:+45924662 | None:intergenic |
CCAAACTTGACATGGTGAAG+TGG | 0.606059 | 3_4:+45924690 | None:intergenic |
TGGCTCCTCCAAACTTGACA+TGG | 0.606063 | 3_4:+45924682 | None:intergenic |
AATGGCAGTCTTTGAGCCAG+AGG | 0.609686 | 3_4:+45921194 | None:intergenic |
TGGCTGTCCATATGCTAAGG+GGG | 0.610224 | 3_4:-45921340 | Msa0503040:CDS |
TAAGTTAGTTGGTTGGTGAG+GGG | 0.612642 | 3_4:+45925849 | None:intergenic |
ACAGAATACCTTCAAAATGG+AGG | 0.613881 | 3_4:+45920790 | None:intergenic |
ACACAGCCGAAACATACCCT+TGG | 0.613881 | 3_4:-45924326 | Msa0503040:CDS |
AGTCCAAGGACTATGACCAC+AGG | 0.615138 | 3_4:-45924264 | Msa0503040:CDS |
AGGTATGTATCATGCGTTGT+TGG | 0.615911 | 3_4:-45922505 | Msa0503040:CDS |
TCCTAACTCATCAACGTGAG+TGG | 0.618319 | 3_4:+45920997 | None:intergenic |
CTTGGTGACACAATTGGGGT+AGG | 0.625438 | 3_4:-45922397 | Msa0503040:CDS |
GAGGTGACTCTTTCAGTCCA+AGG | 0.626999 | 3_4:-45924278 | Msa0503040:CDS |
GGCATCAGGAAATGTAGCGA+CGG | 0.627133 | 3_4:-45921319 | Msa0503040:CDS |
ATAGATGGGAATAAGTGCTG+TGG | 0.633320 | 3_4:-45921385 | Msa0503040:intron |
AGATAGTTGAAGTTGGACCA+AGG | 0.636448 | 3_4:-45923913 | Msa0503040:CDS |
GAACCTCTGAACTCTGTCCA+TGG | 0.637112 | 3_4:+45924628 | None:intergenic |
TTGGACTGAAAGAGTCACCT+CGG | 0.641749 | 3_4:+45924280 | None:intergenic |
CTCACTTGGTGACACAATTG+GGG | 0.642342 | 3_4:-45922401 | Msa0503040:CDS |
TTGACTATACTGGTAATCTG+AGG | 0.644486 | 3_4:+45924197 | None:intergenic |
TGGCAGTCTTTGAGCCAGAG+GGG | 0.660951 | 3_4:+45921196 | None:intergenic |
GTTGCCAAGCATGAGTACCA+TGG | 0.664679 | 3_4:-45924645 | Msa0503040:CDS |
GTCCAAGGACTATGACCACA+GGG | 0.671076 | 3_4:-45924263 | Msa0503040:CDS |
TGGTAATCTGAGGTACAAAG+TGG | 0.671809 | 3_4:+45924207 | None:intergenic |
CAAGCAGTTCATAACCTGAG+AGG | 0.688642 | 3_4:-45923297 | Msa0503040:CDS |
GTACCATGGACAGAGTTCAG+AGG | 0.731970 | 3_4:-45924631 | Msa0503040:CDS |
CAAACAAGAGACATGTCCCG+AGG | 0.735346 | 3_4:-45924297 | Msa0503040:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTAATATATTTTTTAAT+TGG | + | chr3_4:45924276-45924295 | None:intergenic | 0.0% |
!! | AAAACTATAACATTATATAT+TGG | + | chr3_4:45920989-45921008 | None:intergenic | 10.0% |
!! | TTATGCTATATATATATAAT+TGG | + | chr3_4:45922169-45922188 | None:intergenic | 10.0% |
!! | TCTATTAAATTATAATTCTT+TGG | - | chr3_4:45922466-45922485 | Msa0503040:CDS | 10.0% |
!!! | TATCTATATTTTACATTTAT+AGG | - | chr3_4:45923366-45923385 | Msa0503040:intron | 10.0% |
!!! | ATCTATATTTTACATTTATA+GGG | - | chr3_4:45923367-45923386 | Msa0503040:intron | 10.0% |
!!! | TTTCATTTATTTTTGTTTAT+TGG | - | chr3_4:45924766-45924785 | Msa0503040:intron | 10.0% |
!! | AAATAAATGAATAAGTTAGT+TGG | + | chr3_4:45920720-45920739 | None:intergenic | 15.0% |
!!! | TTACATTTTTTGAAGTATAT+CGG | - | chr3_4:45921147-45921166 | Msa0503040:exon | 15.0% |
!!! | ACTAAATTTTGCTTATATTT+GGG | + | chr3_4:45921245-45921264 | None:intergenic | 15.0% |
!! | AAGTTAAATAAATATGACAA+AGG | + | chr3_4:45922812-45922831 | None:intergenic | 15.0% |
!!! | TGTAATCATATCTTTTATAA+TGG | + | chr3_4:45923111-45923130 | None:intergenic | 15.0% |
!!! | TCTATATTTTACATTTATAG+GGG | - | chr3_4:45923368-45923387 | Msa0503040:intron | 15.0% |
!! | TCAAATGGTAAAAAAAAAAT+TGG | + | chr3_4:45923657-45923676 | None:intergenic | 15.0% |
!!! | TAAATTTTTATCTTTTTGCT+AGG | - | chr3_4:45925802-45925821 | Msa0503040:five_prime_UTR | 15.0% |
!! | AAAAATGTAATTCATTCCTT+TGG | + | chr3_4:45921137-45921156 | None:intergenic | 20.0% |
!!! | GACTAAATTTTGCTTATATT+TGG | + | chr3_4:45921246-45921265 | None:intergenic | 20.0% |
!! | TCAAAAAAAGTTTATGCATT+TGG | - | chr3_4:45921264-45921283 | Msa0503040:CDS | 20.0% |
!! | ATTTAATTACTCTTCTATGA+TGG | - | chr3_4:45921392-45921411 | Msa0503040:intron | 20.0% |
!! | ATATATAATTGGCAGATAAT+AGG | + | chr3_4:45922158-45922177 | None:intergenic | 20.0% |
!!! | GTGATTTTATCATATTTCTT+TGG | - | chr3_4:45922550-45922569 | Msa0503040:intron | 20.0% |
!! | TATCAATCCCATAAATTAAA+AGG | - | chr3_4:45922891-45922910 | Msa0503040:intron | 20.0% |
!!! | ACCATTACCTTTTAATTTAT+GGG | + | chr3_4:45922901-45922920 | None:intergenic | 20.0% |
!!! | TACCATTACCTTTTAATTTA+TGG | + | chr3_4:45922902-45922921 | None:intergenic | 20.0% |
!!! | TACCATTTGATATTTTCTAT+AGG | - | chr3_4:45923667-45923686 | Msa0503040:intron | 20.0% |
!! | ATCCTATAGAAAATATCAAA+TGG | + | chr3_4:45923672-45923691 | None:intergenic | 20.0% |
!! | GAGTTTAAAAAATACAAAGA+AGG | + | chr3_4:45923896-45923915 | None:intergenic | 20.0% |
!!! | TGTATTTTTTAAACTCAATC+AGG | - | chr3_4:45923900-45923919 | Msa0503040:CDS | 20.0% |
!!! | TGTGGATATTGTAAATTTTA+CGG | - | chr3_4:45923969-45923988 | Msa0503040:intron | 20.0% |
!!! | TTTTATATTAAAGTCGAACT+TGG | - | chr3_4:45924220-45924239 | Msa0503040:CDS | 20.0% |
!! | CAATTACTTGTATAGAAAAA+TGG | + | chr3_4:45924411-45924430 | None:intergenic | 20.0% |
!!! | TTATTATTTTAACTGTGATC+AGG | - | chr3_4:45924604-45924623 | Msa0503040:CDS | 20.0% |
!!! | TTGATAGTTCATTCATTAAT+TGG | + | chr3_4:45924849-45924868 | None:intergenic | 20.0% |
!! | TATCAAACGACTATAATTAA+TGG | - | chr3_4:45924863-45924882 | Msa0503040:intron | 20.0% |
!!! | TGATTTGTTTAATCTTAATC+AGG | + | chr3_4:45924985-45925004 | None:intergenic | 20.0% |
!! | TTTGTTTGCATATAAATAGA+TGG | - | chr3_4:45925155-45925174 | Msa0503040:intron | 20.0% |
!! | TTGTTTGCATATAAATAGAT+GGG | - | chr3_4:45925156-45925175 | Msa0503040:intron | 20.0% |
!! | ATATAGATGTTATCATATCT+TGG | + | chr3_4:45925415-45925434 | None:intergenic | 20.0% |
!! | TAGCATAAAAATATATATCC+AGG | - | chr3_4:45925451-45925470 | Msa0503040:intron | 20.0% |
!! | AAAAACACTACCAAAAAAAA+AGG | + | chr3_4:45925832-45925851 | None:intergenic | 20.0% |
! | AAATGAATAAGTTAGTTGGT+TGG | + | chr3_4:45920716-45920735 | None:intergenic | 25.0% |
!! | GTCTAATTTTCATTCGTTTA+AGG | - | chr3_4:45920896-45920915 | Msa0503040:three_prime_UTR | 25.0% |
! | CTTCAAATTACAGCAAAATA+AGG | + | chr3_4:45920942-45920961 | None:intergenic | 25.0% |
!!! | CTTATTTTGCTGTAATTTGA+AGG | - | chr3_4:45920940-45920959 | Msa0503040:three_prime_UTR | 25.0% |
!! | ACAGTACAATGTAGTTTTTA+TGG | - | chr3_4:45921188-45921207 | Msa0503040:CDS | 25.0% |
! | TAGATTTCACCATATAGAAT+AGG | - | chr3_4:45921716-45921735 | Msa0503040:intron | 25.0% |
! | TAATAAGTGCCTATTCTATA+TGG | + | chr3_4:45921728-45921747 | None:intergenic | 25.0% |
! | ATCATATTTCTTTGGTTAGT+TGG | - | chr3_4:45922558-45922577 | Msa0503040:intron | 25.0% |
! | TTTGTTAAGATAGTTGAAGT+TGG | - | chr3_4:45922635-45922654 | Msa0503040:intron | 25.0% |
! | AATTCAATCTTTACATCTGT+TGG | + | chr3_4:45922698-45922717 | None:intergenic | 25.0% |
! | GATATTATGAATGATTGTTG+TGG | - | chr3_4:45922832-45922851 | Msa0503040:intron | 25.0% |
! | TCCCATAAATTAAAAGGTAA+TGG | - | chr3_4:45922897-45922916 | Msa0503040:intron | 25.0% |
! | TTGAGCACAAATAAAAAGTA+GGG | + | chr3_4:45922981-45923000 | None:intergenic | 25.0% |
! | AATATAGATAAGACATCTGA+AGG | + | chr3_4:45923356-45923375 | None:intergenic | 25.0% |
! | ATTAAAGTGGAGATATTTGA+TGG | + | chr3_4:45923588-45923607 | None:intergenic | 25.0% |
! | ACTTGCAAGTTATATTAAAG+TGG | + | chr3_4:45923601-45923620 | None:intergenic | 25.0% |
! | CATAGAATTTGATGTCTTAT+GGG | + | chr3_4:45923803-45923822 | None:intergenic | 25.0% |
! | TCATAGAATTTGATGTCTTA+TGG | + | chr3_4:45923804-45923823 | None:intergenic | 25.0% |
!!! | ATTGTTGTTTTGAGATGATT+TGG | - | chr3_4:45923858-45923877 | Msa0503040:CDS | 25.0% |
! | ATTTACAATATCCACACAAA+GGG | + | chr3_4:45923965-45923984 | None:intergenic | 25.0% |
! | AATTTACAATATCCACACAA+AGG | + | chr3_4:45923966-45923985 | None:intergenic | 25.0% |
!! | AAGTCTTTGAAAATACGAAA+TGG | + | chr3_4:45924366-45924385 | None:intergenic | 25.0% |
! | TAATTGAAAGCAGAAATCAA+AGG | - | chr3_4:45924425-45924444 | Msa0503040:intron | 25.0% |
! | AATTGAAAGCAGAAATCAAA+GGG | - | chr3_4:45924426-45924445 | Msa0503040:intron | 25.0% |
! | TCAAACATTTAATTGAGACT+AGG | - | chr3_4:45924501-45924520 | Msa0503040:intron | 25.0% |
!! | TCAGAAAGAGTATGTATATT+CGG | + | chr3_4:45924580-45924599 | None:intergenic | 25.0% |
!! | TATTTGTTAACTTACTTGGA+GGG | + | chr3_4:45924737-45924756 | None:intergenic | 25.0% |
!! | AAGCTATTTGTTAACTTACT+TGG | + | chr3_4:45924741-45924760 | None:intergenic | 25.0% |
! | ACACATTACATATATAGAAG+AGG | + | chr3_4:45924816-45924835 | None:intergenic | 25.0% |
! | AATACCATGTACATTAGATT+TGG | - | chr3_4:45924905-45924924 | Msa0503040:intron | 25.0% |
! | AAATCCAAATCTAATGTACA+TGG | + | chr3_4:45924912-45924931 | None:intergenic | 25.0% |
!! | TAGAATGTTTAACTTTAAGC+TGG | - | chr3_4:45925083-45925102 | Msa0503040:intron | 25.0% |
!! | AGAATGTTTAACTTTAAGCT+GGG | - | chr3_4:45925084-45925103 | Msa0503040:intron | 25.0% |
!! | TTTTGTTCTTCTTCTATAAC+TGG | + | chr3_4:45925535-45925554 | None:intergenic | 25.0% |
! | ATGATGTATAGTTAGCTATA+CGG | - | chr3_4:45925678-45925697 | Msa0503040:five_prime_UTR | 25.0% |
!! | ATTATTTACCTCCATTTTGA+AGG | - | chr3_4:45925757-45925776 | Msa0503040:five_prime_UTR | 25.0% |
! | TTTACAGAATACCTTCAAAA+TGG | + | chr3_4:45925771-45925790 | None:intergenic | 25.0% |
ATTCAAATTCCCCAATTTCT+AGG | - | chr3_4:45920830-45920849 | Msa0503040:three_prime_UTR | 30.0% | |
TTCAAATTCCCCAATTTCTA+GGG | - | chr3_4:45920831-45920850 | Msa0503040:three_prime_UTR | 30.0% | |
TATACGAAACCCTAGAAATT+GGG | + | chr3_4:45920843-45920862 | None:intergenic | 30.0% | |
TTATACGAAACCCTAGAAAT+TGG | + | chr3_4:45920844-45920863 | None:intergenic | 30.0% | |
AGAATTGAAGAAAACGTTGA+GGG | + | chr3_4:45920874-45920893 | None:intergenic | 30.0% | |
AAGAATTGAAGAAAACGTTG+AGG | + | chr3_4:45920875-45920894 | None:intergenic | 30.0% | |
! | CAATTGTGATTAGTTGAATG+AGG | - | chr3_4:45921078-45921097 | Msa0503040:three_prime_UTR | 30.0% |
TCTTTGACATGTTAAACCAA+AGG | - | chr3_4:45921118-45921137 | Msa0503040:three_prime_UTR | 30.0% | |
!! | ATTTTGCTTATATTTGGGAC+CGG | + | chr3_4:45921240-45921259 | None:intergenic | 30.0% |
!! | CTTTTGCTTATATTTGAGAC+CGG | - | chr3_4:45921321-45921340 | Msa0503040:CDS | 30.0% |
TACTCTTCTATGATGGTTAA+TGG | - | chr3_4:45921399-45921418 | Msa0503040:intron | 30.0% | |
! | AGTTTTGCTCTGCATTTAAT+TGG | - | chr3_4:45921606-45921625 | Msa0503040:intron | 30.0% |
! | GTTTTGCTCTGCATTTAATT+GGG | - | chr3_4:45921607-45921626 | Msa0503040:intron | 30.0% |
! | TTTTGCTCTGCATTTAATTG+GGG | - | chr3_4:45921608-45921627 | Msa0503040:intron | 30.0% |
CTAAATACAACTACAAGCAA+AGG | + | chr3_4:45921699-45921718 | None:intergenic | 30.0% | |
ATACCCAAATTATCTACTTG+TGG | + | chr3_4:45921971-45921990 | None:intergenic | 30.0% | |
ACAAGTAGATAATTTGGGTA+TGG | - | chr3_4:45921970-45921989 | Msa0503040:intron | 30.0% | |
CAAGTAGATAATTTGGGTAT+GGG | - | chr3_4:45921971-45921990 | Msa0503040:intron | 30.0% | |
CAGGAGTTAATGTAAAGTAA+AGG | + | chr3_4:45922121-45922140 | None:intergenic | 30.0% | |
TAACAAAGACATGCAAGATA+TGG | - | chr3_4:45922389-45922408 | Msa0503040:CDS | 30.0% | |
AAGTTTAAATTCACTGCAGT+TGG | - | chr3_4:45922528-45922547 | Msa0503040:intron | 30.0% | |
TCAACTATCTTAACAAACTC+AGG | + | chr3_4:45922632-45922651 | None:intergenic | 30.0% | |
!!! | TAGTTTTGTATCTCCCAAAT+GGG | - | chr3_4:45922763-45922782 | Msa0503040:intron | 30.0% |
GCGTTATAATATATACCTGT+GGG | + | chr3_4:45922790-45922809 | None:intergenic | 30.0% | |
! | AAAAGTAGGGGAAATCATTT+TGG | + | chr3_4:45922968-45922987 | None:intergenic | 30.0% |
TGAGCACAAATAAAAAGTAG+GGG | + | chr3_4:45922980-45922999 | None:intergenic | 30.0% | |
GTTGAGCACAAATAAAAAGT+AGG | + | chr3_4:45922982-45923001 | None:intergenic | 30.0% | |
! | TGTTCGGATTGAATGATTTT+GGG | + | chr3_4:45923050-45923069 | None:intergenic | 30.0% |
CACATCACAGTAGAAATAAT+TGG | + | chr3_4:45923175-45923194 | None:intergenic | 30.0% | |
TTTAAATTAGGAGTCAGAAC+TGG | + | chr3_4:45923294-45923313 | None:intergenic | 30.0% | |
! | AGTTCTGACTCCTAATTTAA+AGG | - | chr3_4:45923293-45923312 | Msa0503040:CDS | 30.0% |
GATAGTTGCACCTTTAAATT+AGG | + | chr3_4:45923306-45923325 | None:intergenic | 30.0% | |
! | TGATGGATGCTTAGAATAAT+GGG | + | chr3_4:45923571-45923590 | None:intergenic | 30.0% |
! | TTGATGGATGCTTAGAATAA+TGG | + | chr3_4:45923572-45923591 | None:intergenic | 30.0% |
! | AAGTTCATCTGAAATTGAAC+TGG | - | chr3_4:45923752-45923771 | Msa0503040:intron | 30.0% |
TCTGTTGTACTTATTCCAAT+CGG | - | chr3_4:45924008-45924027 | Msa0503040:intron | 30.0% | |
!! | AATTTAAATACAGCACCGAT+TGG | + | chr3_4:45924026-45924045 | None:intergenic | 30.0% |
!! | ATCGGTGCTGTATTTAAATT+TGG | - | chr3_4:45924026-45924045 | Msa0503040:intron | 30.0% |
GTGCTGTATTTAAATTTGGT+AGG | - | chr3_4:45924030-45924049 | Msa0503040:intron | 30.0% | |
! | AGCTAAAGCACTATATGATA+TGG | - | chr3_4:45924118-45924137 | Msa0503040:intron | 30.0% |
! | GCTAAAGCACTATATGATAT+GGG | - | chr3_4:45924119-45924138 | Msa0503040:intron | 30.0% |
CAGAAATCAAAGGGAAAATA+AGG | - | chr3_4:45924435-45924454 | Msa0503040:intron | 30.0% | |
TAATTGAGACTAGGAAGAAT+TGG | - | chr3_4:45924510-45924529 | Msa0503040:intron | 30.0% | |
AATTGAGACTAGGAAGAATT+GGG | - | chr3_4:45924511-45924530 | Msa0503040:intron | 30.0% | |
TATGTATATTCGGGATTAAG+AGG | + | chr3_4:45924570-45924589 | None:intergenic | 30.0% | |
! | CAGAAAGAGTATGTATATTC+GGG | + | chr3_4:45924579-45924598 | None:intergenic | 30.0% |
! | CTATTTGTTAACTTACTTGG+AGG | + | chr3_4:45924738-45924757 | None:intergenic | 30.0% |
! | CAGTTATTAATGGACATTCT+TGG | - | chr3_4:45925132-45925151 | Msa0503040:intron | 30.0% |
ATCAAAACCAACGTTGATAT+TGG | - | chr3_4:45925291-45925310 | Msa0503040:intron | 30.0% | |
CATATAGAATGATATCCCAT+TGG | + | chr3_4:45925485-45925504 | None:intergenic | 30.0% | |
ATACACAACTTAATGCATGA+TGG | + | chr3_4:45925660-45925679 | None:intergenic | 30.0% | |
!! | TTTGAAGGTATTCTGTAAAG+TGG | - | chr3_4:45925772-45925791 | Msa0503040:five_prime_UTR | 30.0% |
!!! | TTTTGGTAGTGTTTTTTGCT+AGG | - | chr3_4:45925836-45925855 | Msa0503040:five_prime_UTR | 30.0% |
!! | ATAAGTTAGTTGGTTGGTGA+GGG | + | chr3_4:45920710-45920729 | None:intergenic | 35.0% |
! | AATAAGTTAGTTGGTTGGTG+AGG | + | chr3_4:45920711-45920730 | None:intergenic | 35.0% |
AAGAAGAACGCGAAGAATAA+AGG | + | chr3_4:45920774-45920793 | None:intergenic | 35.0% | |
ATACGAAACCCTAGAAATTG+GGG | + | chr3_4:45920842-45920861 | None:intergenic | 35.0% | |
GCTGTAATTTGAAGGCAATT+TGG | - | chr3_4:45920948-45920967 | Msa0503040:three_prime_UTR | 35.0% | |
GTAATTTGAAGGCAATTTGG+TGG | - | chr3_4:45920951-45920970 | Msa0503040:three_prime_UTR | 35.0% | |
AATATGCATTCTCTGCTTTG+GGG | + | chr3_4:45921214-45921233 | None:intergenic | 35.0% | |
CAATATGCATTCTCTGCTTT+GGG | + | chr3_4:45921215-45921234 | None:intergenic | 35.0% | |
TCAATATGCATTCTCTGCTT+TGG | + | chr3_4:45921216-45921235 | None:intergenic | 35.0% | |
CTTCTATGATGGTTAATGGA+AGG | - | chr3_4:45921403-45921422 | Msa0503040:intron | 35.0% | |
!! | AAAACCCACATTAGTTTGTC+TGG | - | chr3_4:45921492-45921511 | Msa0503040:intron | 35.0% |
AACTAATCCAGTCAAAAGAC+CGG | + | chr3_4:45921673-45921692 | None:intergenic | 35.0% | |
GTATATATTTCCCTACAACC+TGG | - | chr3_4:45921759-45921778 | Msa0503040:intron | 35.0% | |
ATGATTTCTACCATTTCACC+AGG | + | chr3_4:45921780-45921799 | None:intergenic | 35.0% | |
CCAAATTATCTACTTGTGGA+CGG | + | chr3_4:45921967-45921986 | None:intergenic | 35.0% | |
CGTCCACAAGTAGATAATTT+GGG | - | chr3_4:45921965-45921984 | Msa0503040:intron | 35.0% | |
! | ATGGGAAACTGCTTTATTGA+AGG | - | chr3_4:45921989-45922008 | Msa0503040:intron | 35.0% |
ATAGGTCAGTAATACATGAC+AGG | + | chr3_4:45922140-45922159 | None:intergenic | 35.0% | |
TTGACTATACTGGTAATCTG+AGG | + | chr3_4:45922361-45922380 | None:intergenic | 35.0% | |
!! | TATTGCGCTTTTGACTATAC+TGG | + | chr3_4:45922371-45922390 | None:intergenic | 35.0% |
CATGCAAGATATGGCATATA+AGG | - | chr3_4:45922398-45922417 | Msa0503040:CDS | 35.0% | |
ATGGCATATAAGGTATGCAA+TGG | - | chr3_4:45922408-45922427 | Msa0503040:CDS | 35.0% | |
TGTGCAATGCAGTTTATGAA+AGG | - | chr3_4:45922602-45922621 | Msa0503040:intron | 35.0% | |
ATTCATAGACTAGCATCTAC+TGG | - | chr3_4:45922719-45922738 | Msa0503040:intron | 35.0% | |
TTCATAGACTAGCATCTACT+GGG | - | chr3_4:45922720-45922739 | Msa0503040:intron | 35.0% | |
!!! | CTAGTTTTGTATCTCCCAAA+TGG | - | chr3_4:45922762-45922781 | Msa0503040:intron | 35.0% |
GGCGTTATAATATATACCTG+TGG | + | chr3_4:45922791-45922810 | None:intergenic | 35.0% | |
!!! | TTGAATGATTTTGGGGTGAA+TGG | + | chr3_4:45923042-45923061 | None:intergenic | 35.0% |
! | GTTCGGATTGAATGATTTTG+GGG | + | chr3_4:45923049-45923068 | None:intergenic | 35.0% |
! | CTGTTCGGATTGAATGATTT+TGG | + | chr3_4:45923051-45923070 | None:intergenic | 35.0% |
AAATCGAATGACATTGAAGC+AGG | + | chr3_4:45923205-45923224 | None:intergenic | 35.0% | |
CATTCGATTTATGTCTCAGT+TGG | - | chr3_4:45923215-45923234 | Msa0503040:intron | 35.0% | |
GATGGATGCTTAGAATAATG+GGG | + | chr3_4:45923570-45923589 | None:intergenic | 35.0% | |
! | TATAACTTGCAAGTTGCAAG+TGG | - | chr3_4:45923607-45923626 | Msa0503040:intron | 35.0% |
! | ATAACTTGCAAGTTGCAAGT+GGG | - | chr3_4:45923608-45923627 | Msa0503040:intron | 35.0% |
CGAATATAGAGAAGATTGCA+GGG | + | chr3_4:45923707-45923726 | None:intergenic | 35.0% | |
CCTGCAATCTTCTCTATATT+CGG | - | chr3_4:45923705-45923724 | Msa0503040:intron | 35.0% | |
ATGTCTTATGGGATAGCATT+AGG | + | chr3_4:45923792-45923811 | None:intergenic | 35.0% | |
ACAGATATAGATGTTGAGAC+TGG | + | chr3_4:45923838-45923857 | None:intergenic | 35.0% | |
TGTAACTGTTAAGACCTTGA+CGG | + | chr3_4:45923931-45923950 | None:intergenic | 35.0% | |
!!! | ACATAAGCTACTTTTGATGG+AGG | + | chr3_4:45924098-45924117 | None:intergenic | 35.0% |
!!! | GCTACATAAGCTACTTTTGA+TGG | + | chr3_4:45924101-45924120 | None:intergenic | 35.0% |
AAGTTTGTGCTTAATTGGGT+TGG | + | chr3_4:45924300-45924319 | None:intergenic | 35.0% | |
AACCCAATTAAGCACAAACT+TGG | - | chr3_4:45924299-45924318 | Msa0503040:CDS | 35.0% | |
ACCCAATTAAGCACAAACTT+GGG | - | chr3_4:45924300-45924319 | Msa0503040:CDS | 35.0% | |
ACCCAAGTTTGTGCTTAATT+GGG | + | chr3_4:45924304-45924323 | None:intergenic | 35.0% | |
AACCCAAGTTTGTGCTTAAT+TGG | + | chr3_4:45924305-45924324 | None:intergenic | 35.0% | |
ATTGAGACTAGGAAGAATTG+GGG | - | chr3_4:45924512-45924531 | Msa0503040:intron | 35.0% | |
GGAGACAAGAATATTTGGAA+GGG | + | chr3_4:45924716-45924735 | None:intergenic | 35.0% | |
! | AGATTTGGATTTTCTGCAGT+TGG | - | chr3_4:45924920-45924939 | Msa0503040:intron | 35.0% |
!! | TTTTCTAGTCGTAAGGAATC+TGG | - | chr3_4:45925047-45925066 | Msa0503040:intron | 35.0% |
! | TGGGTCTGCATTTTATGATT+CGG | - | chr3_4:45925103-45925122 | Msa0503040:intron | 35.0% |
TCGGTAGTCTCAGTTATTAA+TGG | - | chr3_4:45925122-45925141 | Msa0503040:intron | 35.0% | |
ACAGAATACCTTCAAAATGG+AGG | + | chr3_4:45925768-45925787 | None:intergenic | 35.0% | |
!!! | GCTAGGTTAGCCTTTTTTTT+TGG | - | chr3_4:45925819-45925838 | Msa0503040:five_prime_UTR | 35.0% |
!! | TAAGTTAGTTGGTTGGTGAG+GGG | + | chr3_4:45920709-45920728 | None:intergenic | 40.0% |
GAAGAAAACGTTGAGGGATA+GGG | + | chr3_4:45920868-45920887 | None:intergenic | 40.0% | |
TGAAGAAAACGTTGAGGGAT+AGG | + | chr3_4:45920869-45920888 | None:intergenic | 40.0% | |
GCAGAGAATGCATATTGATC+CGG | - | chr3_4:45921218-45921237 | Msa0503040:CDS | 40.0% | |
! | TGCTTATATTTGAGACCGGA+AGG | - | chr3_4:45921325-45921344 | Msa0503040:CDS | 40.0% |
AAGCTAAGACATACTCCTTC+CGG | + | chr3_4:45921343-45921362 | None:intergenic | 40.0% | |
!! | GAGTATGTCTTAGCTTGCTA+TGG | - | chr3_4:45921347-45921366 | Msa0503040:CDS | 40.0% |
!! | ATGTCTTAGCTTGCTATGGA+TGG | - | chr3_4:45921351-45921370 | Msa0503040:CDS | 40.0% |
!! | TGTCTTAGCTTGCTATGGAT+GGG | - | chr3_4:45921352-45921371 | Msa0503040:CDS | 40.0% |
ACCACCAGACAAACTAATGT+GGG | + | chr3_4:45921499-45921518 | None:intergenic | 40.0% | |
!! | ATGGACTAGCCAACTGAAAT+TGG | + | chr3_4:45921582-45921601 | None:intergenic | 40.0% |
ATGCAGAGCAAAACTCTGTA+TGG | + | chr3_4:45921601-45921620 | None:intergenic | 40.0% | |
!!! | GGTCTTTTGACTGGATTAGT+TGG | - | chr3_4:45921672-45921691 | Msa0503040:intron | 40.0% |
TACCATTTCACCAGGTTGTA+GGG | + | chr3_4:45921772-45921791 | None:intergenic | 40.0% | |
CCGTCCACAAGTAGATAATT+TGG | - | chr3_4:45921964-45921983 | Msa0503040:intron | 40.0% | |
TCTTCATTGTCTTCACTGCA+CGG | + | chr3_4:45922207-45922226 | None:intergenic | 40.0% | |
!! | CCTTTTCCAAGGGTATGTTT+CGG | + | chr3_4:45922238-45922257 | None:intergenic | 40.0% |
!! | CTCTTGTTTGCCTTTTCCAA+GGG | + | chr3_4:45922248-45922267 | None:intergenic | 40.0% |
!! | TCTCTTGTTTGCCTTTTCCA+AGG | + | chr3_4:45922249-45922268 | None:intergenic | 40.0% |
GGGAGAAACACGATGAAATT+TGG | - | chr3_4:45922312-45922331 | Msa0503040:intron | 40.0% | |
! | TGGTAATCTGAGGTACAAAG+TGG | + | chr3_4:45922351-45922370 | None:intergenic | 40.0% |
TATAAGGTATGCAATGGCAG+CGG | - | chr3_4:45922414-45922433 | Msa0503040:CDS | 40.0% | |
AGATAGTTGAAGTTGGACCA+AGG | - | chr3_4:45922642-45922661 | Msa0503040:intron | 40.0% | |
GATAGTTGAAGTTGGACCAA+GGG | - | chr3_4:45922643-45922662 | Msa0503040:intron | 40.0% | |
! | TCATTTTGCAATCCATCCCT+TGG | + | chr3_4:45922662-45922681 | None:intergenic | 40.0% |
TACTGGGTTATCTGTCATTG+AGG | - | chr3_4:45922736-45922755 | Msa0503040:intron | 40.0% | |
GGATCTGTTGGGAAGAAAAA+TGG | + | chr3_4:45923021-45923040 | None:intergenic | 40.0% | |
GTAAATGCGTAAGGTCTGTT+CGG | + | chr3_4:45923066-45923085 | None:intergenic | 40.0% | |
AACTGTGCAGTAAATGCGTA+AGG | + | chr3_4:45923075-45923094 | None:intergenic | 40.0% | |
AACTGGAATTGAGAGCTCTT+TGG | + | chr3_4:45923527-45923546 | None:intergenic | 40.0% | |
CCGAATATAGAGAAGATTGC+AGG | + | chr3_4:45923708-45923727 | None:intergenic | 40.0% | |
GCAATCTTCTCTATATTCGG+TGG | - | chr3_4:45923708-45923727 | Msa0503040:intron | 40.0% | |
!!! | GTTTTGAGATGATTTGGCAC+TGG | - | chr3_4:45923864-45923883 | Msa0503040:CDS | 40.0% |
AGGTATGTATCATGCGTTGT+TGG | - | chr3_4:45924050-45924069 | Msa0503040:intron | 40.0% | |
! | GGTTGTTTCGAAATCTCACT+TGG | - | chr3_4:45924140-45924159 | Msa0503040:intron | 40.0% |
! | ATCTCACTTGGTGACACAAT+TGG | - | chr3_4:45924152-45924171 | Msa0503040:intron | 40.0% |
! | TCTCACTTGGTGACACAATT+GGG | - | chr3_4:45924153-45924172 | Msa0503040:intron | 40.0% |
AAGCCATCTAACTCATTACC+TGG | + | chr3_4:45924188-45924207 | None:intergenic | 40.0% | |
!! | AGCCAAAAGCATTGGAACTA+CGG | + | chr3_4:45924632-45924651 | None:intergenic | 40.0% |
!! | TCCAATGCTTTTGGCTGTAA+TGG | - | chr3_4:45924636-45924655 | Msa0503040:CDS | 40.0% |
GTCCACTTTCATGACACATA+CGG | - | chr3_4:45924685-45924704 | Msa0503040:exon | 40.0% | |
TCCACTTTCATGACACATAC+GGG | - | chr3_4:45924686-45924705 | Msa0503040:exon | 40.0% | |
GGGAGACAAGAATATTTGGA+AGG | + | chr3_4:45924717-45924736 | None:intergenic | 40.0% | |
TGGAGGGAGACAAGAATATT+TGG | + | chr3_4:45924721-45924740 | None:intergenic | 40.0% | |
!! | CTCAGGATTTTCTAGTCGTA+AGG | - | chr3_4:45925040-45925059 | Msa0503040:intron | 40.0% |
! | ATAGATGGGAATAAGTGCTG+TGG | - | chr3_4:45925170-45925189 | Msa0503040:intron | 40.0% |
GATGTTGTGTACATGCTGAA+TGG | - | chr3_4:45925261-45925280 | Msa0503040:intron | 40.0% | |
GAGCTTTCCAATATCAACGT+TGG | + | chr3_4:45925301-45925320 | None:intergenic | 40.0% | |
TATCCAGGTGATTCAACCAA+TGG | - | chr3_4:45925466-45925485 | Msa0503040:intron | 40.0% | |
ATCCAGGTGATTCAACCAAT+GGG | - | chr3_4:45925467-45925486 | Msa0503040:intron | 40.0% | |
!! | GAGAAGCTTGCATTTGCTAT+TGG | + | chr3_4:45925605-45925624 | None:intergenic | 40.0% |
! | TGCTATGGATGGGCAAGTTT+TGG | - | chr3_4:45921362-45921381 | Msa0503040:CDS | 45.0% |
!! | ACCCACATTAGTTTGTCTGG+TGG | - | chr3_4:45921495-45921514 | Msa0503040:intron | 45.0% |
CACCACCAGACAAACTAATG+TGG | + | chr3_4:45921500-45921519 | None:intergenic | 45.0% | |
! | CTTGAGAGAAGTACACTCCA+AGG | + | chr3_4:45921534-45921553 | None:intergenic | 45.0% |
CTTGGAGTGTACTTCTCTCA+AGG | - | chr3_4:45921532-45921551 | Msa0503040:intron | 45.0% | |
TGTACTTCTCTCAAGGTCTC+AGG | - | chr3_4:45921539-45921558 | Msa0503040:intron | 45.0% | |
TAGCCAACTGAAATTGGCAC+CGG | + | chr3_4:45921576-45921595 | None:intergenic | 45.0% | |
TTCCCTACAACCTGGTGAAA+TGG | - | chr3_4:45921767-45921786 | Msa0503040:intron | 45.0% | |
CTACCATTTCACCAGGTTGT+AGG | + | chr3_4:45921773-45921792 | None:intergenic | 45.0% | |
GTGGATGAGAGAAACAAAGC+TGG | + | chr3_4:45921849-45921868 | None:intergenic | 45.0% | |
CCAAACTTGACATGGTGAAG+TGG | + | chr3_4:45921868-45921887 | None:intergenic | 45.0% | |
CCACTTCACCATGTCAAGTT+TGG | - | chr3_4:45921865-45921884 | Msa0503040:CDS | 45.0% | |
CTTCACCATGTCAAGTTTGG+AGG | - | chr3_4:45921868-45921887 | Msa0503040:CDS | 45.0% | |
TCATGCTTGGCAACTTGTCA+TGG | + | chr3_4:45921904-45921923 | None:intergenic | 45.0% | |
AGAGTTCAGAGGTTCTCATC+TGG | - | chr3_4:45921935-45921954 | Msa0503040:intron | 45.0% | |
CCGAAACATACCCTTGGAAA+AGG | - | chr3_4:45922235-45922254 | Msa0503040:intron | 45.0% | |
TTGGACTGAAAGAGTCACCT+CGG | + | chr3_4:45922278-45922297 | None:intergenic | 45.0% | |
TTTCATCGTGTTTCTCCCTG+TGG | + | chr3_4:45922310-45922329 | None:intergenic | 45.0% | |
TATACCTGTGGGACCCATTT+GGG | + | chr3_4:45922779-45922798 | None:intergenic | 45.0% | |
ATATACCTGTGGGACCCATT+TGG | + | chr3_4:45922780-45922799 | None:intergenic | 45.0% | |
TTGGGGTGAATGGATCTGTT+GGG | + | chr3_4:45923032-45923051 | None:intergenic | 45.0% | |
! | TTTGGGGTGAATGGATCTGT+TGG | + | chr3_4:45923033-45923052 | None:intergenic | 45.0% |
CAAGCAGTTCATAACCTGAG+AGG | - | chr3_4:45923258-45923277 | Msa0503040:intron | 45.0% | |
AGCTCTCAATTCCAGTTCGA+GGG | - | chr3_4:45923530-45923549 | Msa0503040:intron | 45.0% | |
CAAAATGCATACCCTCGAAC+TGG | + | chr3_4:45923544-45923563 | None:intergenic | 45.0% | |
CATGTGAAAGTCCCTTTGTG+TGG | - | chr3_4:45923951-45923970 | Msa0503040:intron | 45.0% | |
!!! | GCTACTTTTGATGGAGGAAC+TGG | + | chr3_4:45924092-45924111 | None:intergenic | 45.0% |
! | CTCACTTGGTGACACAATTG+GGG | - | chr3_4:45924154-45924173 | Msa0503040:intron | 45.0% |
ACGCCAGGTAATGAGTTAGA+TGG | - | chr3_4:45924182-45924201 | Msa0503040:CDS | 45.0% | |
! | CACCGTAGTTCCAATGCTTT+TGG | - | chr3_4:45924627-45924646 | Msa0503040:CDS | 45.0% |
! | GCCATTACAGCCAAAAGCAT+TGG | + | chr3_4:45924640-45924659 | None:intergenic | 45.0% |
! | TGGACAGCAAGCTTTTCTGT+TGG | + | chr3_4:45924670-45924689 | None:intergenic | 45.0% |
CTGCTAGAGATACATGACTG+TGG | - | chr3_4:45925013-45925032 | Msa0503040:intron | 45.0% | |
TACATGACTGTGGCAAACTC+AGG | - | chr3_4:45925023-45925042 | Msa0503040:intron | 45.0% | |
! | GATTCTTCAGTTGCTGGTCT+TGG | - | chr3_4:45925192-45925211 | Msa0503040:intron | 45.0% |
! | GTGTACATGCTGAATGGACT+TGG | - | chr3_4:45925267-45925286 | Msa0503040:intron | 45.0% |
ATTGGAAAGCTCATGTCAGC+TGG | - | chr3_4:45925309-45925328 | Msa0503040:intron | 45.0% | |
!! | ATCAGCAGTGACTCGGTTAA+GGG | + | chr3_4:45925388-45925407 | None:intergenic | 45.0% |
! | ATCCCATTGGTTGAATCACC+TGG | + | chr3_4:45925472-45925491 | None:intergenic | 45.0% |
! | TCCACTCACGTTGATGAGTT+AGG | - | chr3_4:45925557-45925576 | Msa0503040:intron | 45.0% |
TCCTAACTCATCAACGTGAG+TGG | + | chr3_4:45925561-45925580 | None:intergenic | 45.0% | |
!! | TTAGTTGGTTGGTGAGGGGA+TGG | + | chr3_4:45920705-45920724 | None:intergenic | 50.0% |
AAGTACACTCCAAGGTCCCA+AGG | + | chr3_4:45921526-45921545 | None:intergenic | 50.0% | |
AGCCAACTGAAATTGGCACC+GGG | + | chr3_4:45921575-45921594 | None:intergenic | 50.0% | |
!! | GATTGGTCTCCTGGATTAGC+CGG | - | chr3_4:45921651-45921670 | Msa0503040:intron | 50.0% |
GTCAAAAGACCGGCTAATCC+AGG | + | chr3_4:45921663-45921682 | None:intergenic | 50.0% | |
!!! | GGATTAGCCGGTCTTTTGAC+TGG | - | chr3_4:45921663-45921682 | Msa0503040:intron | 50.0% |
TGGCTCCTCCAAACTTGACA+TGG | + | chr3_4:45921876-45921895 | None:intergenic | 50.0% | |
TCAAGTTTGGAGGAGCCACT+TGG | - | chr3_4:45921878-45921897 | Msa0503040:CDS | 50.0% | |
GTTGCCAAGCATGAGTACCA+TGG | - | chr3_4:45921910-45921929 | Msa0503040:CDS | 50.0% | |
CTGTCCATGGTACTCATGCT+TGG | + | chr3_4:45921917-45921936 | None:intergenic | 50.0% | |
GTACCATGGACAGAGTTCAG+AGG | - | chr3_4:45921924-45921943 | Msa0503040:CDS | 50.0% | |
GAACCTCTGAACTCTGTCCA+TGG | + | chr3_4:45921930-45921949 | None:intergenic | 50.0% | |
ACACAGCCGAAACATACCCT+TGG | - | chr3_4:45922229-45922248 | Msa0503040:intron | 50.0% | |
CAAACAAGAGACATGTCCCG+AGG | - | chr3_4:45922258-45922277 | Msa0503040:intron | 50.0% | |
TGGACTGAAAGAGTCACCTC+GGG | + | chr3_4:45922277-45922296 | None:intergenic | 50.0% | |
GAGGTGACTCTTTCAGTCCA+AGG | - | chr3_4:45922277-45922296 | Msa0503040:intron | 50.0% | |
AGTCCAAGGACTATGACCAC+AGG | - | chr3_4:45922291-45922310 | Msa0503040:intron | 50.0% | |
GTCCAAGGACTATGACCACA+GGG | - | chr3_4:45922292-45922311 | Msa0503040:intron | 50.0% | |
GCAGCGGTACTTTCTGTTCA+AGG | - | chr3_4:45922430-45922449 | Msa0503040:CDS | 50.0% | |
GTTGAAGTTGGACCAAGGGA+TGG | - | chr3_4:45922647-45922666 | Msa0503040:intron | 50.0% | |
! | TTTGAAGCTGCTGTTGCTGC+TGG | - | chr3_4:45923391-45923410 | Msa0503040:intron | 50.0% |
GAGCTCTCAATTCCAGTTCG+AGG | - | chr3_4:45923529-45923548 | Msa0503040:intron | 50.0% | |
TCAATCAGGTCAAGCCGTCA+AGG | - | chr3_4:45923914-45923933 | Msa0503040:CDS | 50.0% | |
GTTGTTGGATGCCCAGTTGA+AGG | - | chr3_4:45924065-45924084 | Msa0503040:intron | 50.0% | |
GAGGAACTGGTCCTTCAACT+GGG | + | chr3_4:45924079-45924098 | None:intergenic | 50.0% | |
! | CTTGGTGACACAATTGGGGT+AGG | - | chr3_4:45924158-45924177 | Msa0503040:CDS | 50.0% |
GCCCGTATGTGTCATGAAAG+TGG | + | chr3_4:45924690-45924709 | None:intergenic | 50.0% | |
GCTGTGGATTCTTCAGTTGC+TGG | - | chr3_4:45925186-45925205 | Msa0503040:intron | 50.0% | |
!! | TCTTCAGTTGCTGGTCTTGG+TGG | - | chr3_4:45925195-45925214 | Msa0503040:intron | 50.0% |
TGGTGGCTGTCCATATGCTA+AGG | - | chr3_4:45925212-45925231 | Msa0503040:intron | 50.0% | |
GGTGGCTGTCCATATGCTAA+GGG | - | chr3_4:45925213-45925232 | Msa0503040:intron | 50.0% | |
GTGGCTGTCCATATGCTAAG+GGG | - | chr3_4:45925214-45925233 | Msa0503040:intron | 50.0% | |
TGGCTGTCCATATGCTAAGG+GGG | - | chr3_4:45925215-45925234 | Msa0503040:intron | 50.0% | |
GGCATCAGGAAATGTAGCGA+CGG | - | chr3_4:45925236-45925255 | Msa0503040:intron | 50.0% | |
ATGTCAGCTGGCGACTTCAT+CGG | - | chr3_4:45925321-45925340 | Msa0503040:intron | 50.0% | |
GACTTCATCGGCAAGCAGTT+GGG | - | chr3_4:45925333-45925352 | Msa0503040:intron | 50.0% | |
ACTTCATCGGCAAGCAGTTG+GGG | - | chr3_4:45925334-45925353 | Msa0503040:intron | 50.0% | |
ATGGCAGTCTTTGAGCCAGA+GGG | + | chr3_4:45925363-45925382 | None:intergenic | 50.0% | |
AATGGCAGTCTTTGAGCCAG+AGG | + | chr3_4:45925364-45925383 | None:intergenic | 50.0% | |
!! | AGTGACTCGGTTAAGGGCAA+TGG | + | chr3_4:45925382-45925401 | None:intergenic | 50.0% |
!! | CATCAGCAGTGACTCGGTTA+AGG | + | chr3_4:45925389-45925408 | None:intergenic | 50.0% |
!! | TGGAAGCATCAGCAGTGACT+CGG | + | chr3_4:45925395-45925414 | None:intergenic | 50.0% |
! | TTTGTCTGGTGGTGCAGCCT+TGG | - | chr3_4:45921506-45921525 | Msa0503040:intron | 55.0% |
! | TTGTCTGGTGGTGCAGCCTT+GGG | - | chr3_4:45921507-45921526 | Msa0503040:intron | 55.0% |
! | CAACTGAAATTGGCACCGGG+AGG | + | chr3_4:45921572-45921591 | None:intergenic | 55.0% |
! | CTCCCGGTGCCAATTTCAGT+TGG | - | chr3_4:45921570-45921589 | Msa0503040:intron | 55.0% |
! | AATCACACCGTCGACTAGCG+GGG | + | chr3_4:45921635-45921654 | None:intergenic | 55.0% |
! | CAATCACACCGTCGACTAGC+GGG | + | chr3_4:45921636-45921655 | None:intergenic | 55.0% |
! | CCAATCACACCGTCGACTAG+CGG | + | chr3_4:45921637-45921656 | None:intergenic | 55.0% |
GGCAACTTGTCATGGCCAAG+TGG | + | chr3_4:45921896-45921915 | None:intergenic | 55.0% | |
CTCCCTGTGGTCATAGTCCT+TGG | + | chr3_4:45922297-45922316 | None:intergenic | 55.0% | |
ATCTCCCAAATGGGTCCCAC+AGG | - | chr3_4:45922772-45922791 | Msa0503040:intron | 55.0% | |
CTGGCAATCTGATGCCTCTC+AGG | + | chr3_4:45923275-45923294 | None:intergenic | 55.0% | |
ACGAGTGACAGCTCGATAGC+GGG | + | chr3_4:45923500-45923519 | None:intergenic | 55.0% | |
CACGAGTGACAGCTCGATAG+CGG | + | chr3_4:45923501-45923520 | None:intergenic | 55.0% | |
GGAGGAACTGGTCCTTCAAC+TGG | + | chr3_4:45924080-45924099 | None:intergenic | 55.0% | |
TGCATGGCTGCGGCAAATTC+AGG | + | chr3_4:45924951-45924970 | None:intergenic | 55.0% | |
CCTGATGCCCCCTTAGCATA+TGG | + | chr3_4:45925225-45925244 | None:intergenic | 55.0% | |
!! | CCATATGCTAAGGGGGCATC+AGG | - | chr3_4:45925222-45925241 | Msa0503040:intron | 55.0% |
CGACTTCATCGGCAAGCAGT+TGG | - | chr3_4:45925332-45925351 | Msa0503040:intron | 55.0% | |
TGGCAGTCTTTGAGCCAGAG+GGG | + | chr3_4:45925362-45925381 | None:intergenic | 55.0% | |
GTCTCAGGTGCGAATCCTCC+CGG | - | chr3_4:45921554-45921573 | Msa0503040:intron | 60.0% | |
! | ATCACACCGTCGACTAGCGG+GGG | + | chr3_4:45921634-45921653 | None:intergenic | 60.0% |
CCGCTAGTCGACGGTGTGAT+TGG | - | chr3_4:45921634-45921653 | Msa0503040:intron | 60.0% | |
!! | CGACGGTGTGATTGGTCTCC+TGG | - | chr3_4:45921642-45921661 | Msa0503040:intron | 60.0% |
ACAATTGGGGTAGGCACGCC+AGG | - | chr3_4:45924167-45924186 | Msa0503040:CDS | 60.0% | |
TTGCCGCAGCCATGCATCTC+AGG | - | chr3_4:45924955-45924974 | Msa0503040:intron | 60.0% | |
TGCCGCAGCCATGCATCTCA+GGG | - | chr3_4:45924956-45924975 | Msa0503040:intron | 60.0% | |
AGCCCTGAGATGCATGGCTG+CGG | + | chr3_4:45924961-45924980 | None:intergenic | 60.0% | |
TCAGGCAGCCCTGAGATGCA+TGG | + | chr3_4:45924967-45924986 | None:intergenic | 60.0% | |
GTGGTGCAGCCTTGGGACCT+TGG | - | chr3_4:45921514-45921533 | Msa0503040:intron | 65.0% | |
TTGGGGCCCCCGCTAGTCGA+CGG | - | chr3_4:45921625-45921644 | Msa0503040:intron | 70.0% | |
! | AAGCAGTTGGGGCGCCCCTC+TGG | - | chr3_4:45925345-45925364 | Msa0503040:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 45920702 | 45925875 | 45920702 | ID=Msa0503040;Name=Msa0503040 |
chr3_4 | mRNA | 45920702 | 45925875 | 45920702 | ID=Msa0503040-mRNA-1;Parent=Msa0503040;Name=Msa0503040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=241|1|1|1|0.75|0.66|9|453|433 |
chr3_4 | exon | 45920702 | 45921403 | 45920702 | ID=Msa0503040-mRNA-1:exon:9812;Parent=Msa0503040-mRNA-1 |
chr3_4 | exon | 45921836 | 45921951 | 45921836 | ID=Msa0503040-mRNA-1:exon:9811;Parent=Msa0503040-mRNA-1 |
chr3_4 | exon | 45922389 | 45922525 | 45922389 | ID=Msa0503040-mRNA-1:exon:9810;Parent=Msa0503040-mRNA-1 |
chr3_4 | exon | 45923026 | 45923189 | 45923026 | ID=Msa0503040-mRNA-1:exon:9809;Parent=Msa0503040-mRNA-1 |
chr3_4 | exon | 45923263 | 45923343 | 45923263 | ID=Msa0503040-mRNA-1:exon:9808;Parent=Msa0503040-mRNA-1 |
chr3_4 | exon | 45923784 | 45923963 | 45923784 | ID=Msa0503040-mRNA-1:exon:9807;Parent=Msa0503040-mRNA-1 |
chr3_4 | exon | 45924158 | 45924365 | 45924158 | ID=Msa0503040-mRNA-1:exon:9806;Parent=Msa0503040-mRNA-1 |
chr3_4 | exon | 45924536 | 45924727 | 45924536 | ID=Msa0503040-mRNA-1:exon:9805;Parent=Msa0503040-mRNA-1 |
chr3_4 | exon | 45925660 | 45925875 | 45925660 | ID=Msa0503040-mRNA-1:exon:9804;Parent=Msa0503040-mRNA-1 |
chr3_4 | five_prime_UTR | 45925660 | 45925875 | 45925660 | ID=Msa0503040-mRNA-1:five_prime_utr;Parent=Msa0503040-mRNA-1 |
chr3_4 | five_prime_UTR | 45924703 | 45924727 | 45924703 | ID=Msa0503040-mRNA-1:five_prime_utr;Parent=Msa0503040-mRNA-1 |
chr3_4 | CDS | 45924536 | 45924702 | 45924536 | ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1 |
chr3_4 | CDS | 45924158 | 45924365 | 45924158 | ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1 |
chr3_4 | CDS | 45923784 | 45923963 | 45923784 | ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1 |
chr3_4 | CDS | 45923263 | 45923343 | 45923263 | ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1 |
chr3_4 | CDS | 45923026 | 45923189 | 45923026 | ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1 |
chr3_4 | CDS | 45922389 | 45922525 | 45922389 | ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1 |
chr3_4 | CDS | 45921836 | 45921951 | 45921836 | ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1 |
chr3_4 | CDS | 45921155 | 45921403 | 45921155 | ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1 |
chr3_4 | three_prime_UTR | 45920702 | 45921154 | 45920702 | ID=Msa0503040-mRNA-1:three_prime_utr;Parent=Msa0503040-mRNA-1 |
Gene Sequence |
Protein sequence |