AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0503040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503040 MtrunA17_Chr3g0093871 98.383 433 7 0 1 433 1 433 0.0 882
Msa0503040 MtrunA17_Chr7g0255931 72.699 326 88 1 109 433 77 402 1.96e-172 488
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503040 AT2G26800.1 72.581 434 117 2 1 433 1 433 0.0 649
Msa0503040 AT2G26800.2 72.581 434 117 2 1 433 36 468 0.0 649
Msa0503040 AT2G26800.4 72.581 434 117 2 1 433 36 468 0.0 649
Msa0503040 AT2G26800.5 72.032 379 105 1 56 433 10 388 0.0 564
Msa0503040 AT2G26800.3 68.038 316 100 1 1 316 36 350 2.32e-155 444

Find 137 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAAATTCCCCAATTTCT+AGG 0.187583 3_4:-45925725 Msa0503040:five_prime_UTR
GATAGTTGCACCTTTAAATT+AGG 0.211209 3_4:+45923252 None:intergenic
TTATACGAAACCCTAGAAAT+TGG 0.216324 3_4:+45925714 None:intergenic
AGTTCTGACTCCTAATTTAA+AGG 0.233362 3_4:-45923262 Msa0503040:intron
CACCGTAGTTCCAATGCTTT+TGG 0.246522 3_4:-45921928 Msa0503040:CDS
TGGAGGGAGACAAGAATATT+TGG 0.260470 3_4:+45921837 None:intergenic
AGCTAAAGCACTATATGATA+TGG 0.269941 3_4:-45922437 Msa0503040:CDS
AAGCAGTTGGGGCGCCCCTC+TGG 0.273848 3_4:-45921210 Msa0503040:CDS
GGGAGAAACACGATGAAATT+TGG 0.278565 3_4:-45924243 Msa0503040:CDS
TTTGAAGCTGCTGTTGCTGC+TGG 0.278986 3_4:-45923164 Msa0503040:CDS
CATGCAAGATATGGCATATA+AGG 0.283069 3_4:-45924157 Msa0503040:intron
ATCAAAACCAACGTTGATAT+TGG 0.285460 3_4:-45921264 Msa0503040:CDS
TTTACAGAATACCTTCAAAA+TGG 0.293301 3_4:+45920787 None:intergenic
CCACTTCACCATGTCAAGTT+TGG 0.300052 3_4:-45924690 Msa0503040:exon
CCGTCCACAAGTAGATAATT+TGG 0.313604 3_4:-45924591 Msa0503040:CDS
GACTTCATCGGCAAGCAGTT+GGG 0.324564 3_4:-45921222 Msa0503040:CDS
GGAGGAACTGGTCCTTCAAC+TGG 0.330205 3_4:+45922478 None:intergenic
AACTGGAATTGAGAGCTCTT+TGG 0.334848 3_4:+45923031 None:intergenic
CTCCCTGTGGTCATAGTCCT+TGG 0.337045 3_4:+45924261 None:intergenic
TATACGAAACCCTAGAAATT+GGG 0.347105 3_4:+45925715 None:intergenic
GATTCTTCAGTTGCTGGTCT+TGG 0.351386 3_4:-45921363 Msa0503040:CDS
GCTGTGGATTCTTCAGTTGC+TGG 0.359338 3_4:-45921369 Msa0503040:CDS
ATCTCACTTGGTGACACAAT+TGG 0.361351 3_4:-45922403 Msa0503040:CDS
GAGAAGCTTGCATTTGCTAT+TGG 0.363951 3_4:+45920953 None:intergenic
TCTCACTTGGTGACACAATT+GGG 0.372918 3_4:-45922402 Msa0503040:CDS
AAGAAGAACGCGAAGAATAA+AGG 0.384110 3_4:+45925784 None:intergenic
TATACCTGTGGGACCCATTT+GGG 0.388962 3_4:+45923779 None:intergenic
TAACAAAGACATGCAAGATA+TGG 0.395825 3_4:-45924166 Msa0503040:CDS
CGTCCACAAGTAGATAATTT+GGG 0.396400 3_4:-45924590 Msa0503040:CDS
CATCAGCAGTGACTCGGTTA+AGG 0.398712 3_4:+45921169 None:intergenic
CTGGCAATCTGATGCCTCTC+AGG 0.410598 3_4:+45923283 None:intergenic
ATTCATAGACTAGCATCTAC+TGG 0.414544 3_4:-45923836 Msa0503040:CDS
TTCAAATTCCCCAATTTCTA+GGG 0.419100 3_4:-45925724 Msa0503040:five_prime_UTR
ATATACCTGTGGGACCCATT+TGG 0.423740 3_4:+45923778 None:intergenic
CAAAATGCATACCCTCGAAC+TGG 0.425699 3_4:+45923014 None:intergenic
AATTCAATCTTTACATCTGT+TGG 0.426921 3_4:+45923860 None:intergenic
TGAAGAAAACGTTGAGGGAT+AGG 0.427797 3_4:+45925689 None:intergenic
CGACTTCATCGGCAAGCAGT+TGG 0.429165 3_4:-45921223 Msa0503040:CDS
ATATAGATGTTATCATATCT+TGG 0.438779 3_4:+45921143 None:intergenic
TCTTCAGTTGCTGGTCTTGG+TGG 0.441483 3_4:-45921360 Msa0503040:CDS
ACAAGTAGATAATTTGGGTA+TGG 0.441687 3_4:-45924585 Msa0503040:CDS
TCCACTCACGTTGATGAGTT+AGG 0.442451 3_4:-45920998 Msa0503040:three_prime_UTR
GGTGGCTGTCCATATGCTAA+GGG 0.446426 3_4:-45921342 Msa0503040:CDS
TGGTGGCTGTCCATATGCTA+AGG 0.451026 3_4:-45921343 Msa0503040:CDS
AAATAAATGAATAAGTTAGT+TGG 0.460674 3_4:+45925838 None:intergenic
TTAGTTGGTTGGTGAGGGGA+TGG 0.465921 3_4:+45925853 None:intergenic
ATCAGCAGTGACTCGGTTAA+GGG 0.471542 3_4:+45921170 None:intergenic
TTTGAAGGTATTCTGTAAAG+TGG 0.472562 3_4:-45920783 Msa0503040:three_prime_UTR
ATAAGTTAGTTGGTTGGTGA+GGG 0.475102 3_4:+45925848 None:intergenic
ATGGGAAACTGCTTTATTGA+AGG 0.479991 3_4:-45924566 Msa0503040:CDS
GCCATTACAGCCAAAAGCAT+TGG 0.482879 3_4:+45921918 None:intergenic
ACAATTGGGGTAGGCACGCC+AGG 0.486021 3_4:-45922388 Msa0503040:intron
AAGTTAGCTGGACACGACTA+AGG 0.486476 3_4:+45920692 None:intergenic
TTTGTTAAGATAGTTGAAGT+TGG 0.487269 3_4:-45923920 Msa0503040:CDS
TTTAAATTAGGAGTCAGAAC+TGG 0.489900 3_4:+45923264 None:intergenic
GCTAAAGCACTATATGATAT+GGG 0.494567 3_4:-45922436 Msa0503040:CDS
ATGATGTATAGTTAGCTATA+CGG 0.495826 3_4:-45920877 Msa0503040:three_prime_UTR
GAAGAAAACGTTGAGGGATA+GGG 0.496510 3_4:+45925690 None:intergenic
GAGCTCTCAATTCCAGTTCG+AGG 0.500214 3_4:-45923026 Msa0503040:CDS
CAAGTAGATAATTTGGGTAT+GGG 0.504928 3_4:-45924584 Msa0503040:CDS
AGAGTTCAGAGGTTCTCATC+TGG 0.505085 3_4:-45924620 Msa0503040:CDS
CCGAAACATACCCTTGGAAA+AGG 0.505637 3_4:-45924320 Msa0503040:CDS
AATAAGTTAGTTGGTTGGTG+AGG 0.508433 3_4:+45925847 None:intergenic
CTGTCCATGGTACTCATGCT+TGG 0.511693 3_4:+45924641 None:intergenic
ACTTCATCGGCAAGCAGTTG+GGG 0.512566 3_4:-45921221 Msa0503040:CDS
ATCCAGGTGATTCAACCAAT+GGG 0.512862 3_4:-45921088 Msa0503040:three_prime_UTR
ATTGGAAAGCTCATGTCAGC+TGG 0.513314 3_4:-45921246 Msa0503040:CDS
ATCCCATTGGTTGAATCACC+TGG 0.521698 3_4:+45921086 None:intergenic
TATCCAGGTGATTCAACCAA+TGG 0.525894 3_4:-45921089 Msa0503040:three_prime_UTR
TCAACTATCTTAACAAACTC+AGG 0.528412 3_4:+45923926 None:intergenic
CTTCACCATGTCAAGTTTGG+AGG 0.529375 3_4:-45924687 Msa0503040:exon
AGCCAAAAGCATTGGAACTA+CGG 0.530502 3_4:+45921926 None:intergenic
ATCTCCCAAATGGGTCCCAC+AGG 0.534715 3_4:-45923783 Msa0503040:intron
GTCCACTTTCATGACACATA+CGG 0.536770 3_4:-45921870 Msa0503040:CDS
TCCACTTTCATGACACATAC+GGG 0.541191 3_4:-45921869 Msa0503040:CDS
AGAATTGAAGAAAACGTTGA+GGG 0.546967 3_4:+45925684 None:intergenic
GATGTTGTGTACATGCTGAA+TGG 0.548740 3_4:-45921294 Msa0503040:CDS
ACGAGTGACAGCTCGATAGC+GGG 0.549034 3_4:+45923058 None:intergenic
GTTGTTGGATGCCCAGTTGA+AGG 0.549854 3_4:-45922490 Msa0503040:CDS
AAATGAATAAGTTAGTTGGT+TGG 0.550498 3_4:+45925842 None:intergenic
GTTGAAGTTGGACCAAGGGA+TGG 0.550966 3_4:-45923908 Msa0503040:CDS
TCATGCTTGGCAACTTGTCA+TGG 0.551089 3_4:+45924654 None:intergenic
TATTTGTTAACTTACTTGGA+GGG 0.551242 3_4:+45921821 None:intergenic
ATACCCAAATTATCTACTTG+TGG 0.551302 3_4:+45924587 None:intergenic
GTGTACATGCTGAATGGACT+TGG 0.556574 3_4:-45921288 Msa0503040:CDS
ATGTCAGCTGGCGACTTCAT+CGG 0.556641 3_4:-45921234 Msa0503040:CDS
GCCCGTATGTGTCATGAAAG+TGG 0.558059 3_4:+45921868 None:intergenic
TTCATAGACTAGCATCTACT+GGG 0.564553 3_4:-45923835 Msa0503040:CDS
AGTGACTCGGTTAAGGGCAA+TGG 0.564612 3_4:+45921176 None:intergenic
TACTGGGTTATCTGTCATTG+AGG 0.564876 3_4:-45923819 Msa0503040:CDS
TCAAGTTTGGAGGAGCCACT+TGG 0.565206 3_4:-45924677 Msa0503040:CDS
GGAGACAAGAATATTTGGAA+GGG 0.565627 3_4:+45921842 None:intergenic
GGGAGACAAGAATATTTGGA+AGG 0.577919 3_4:+45921841 None:intergenic
ATGGCAGTCTTTGAGCCAGA+GGG 0.579520 3_4:+45921195 None:intergenic
GGTTGTTTCGAAATCTCACT+TGG 0.579694 3_4:-45922415 Msa0503040:CDS
GATAGTTGAAGTTGGACCAA+GGG 0.581744 3_4:-45923912 Msa0503040:CDS
TGGACTGAAAGAGTCACCTC+GGG 0.587158 3_4:+45924281 None:intergenic
ATACGAAACCCTAGAAATTG+GGG 0.587254 3_4:+45925716 None:intergenic
CATATAGAATGATATCCCAT+TGG 0.589144 3_4:+45921073 None:intergenic
TGTGCAATGCAGTTTATGAA+AGG 0.589993 3_4:-45923953 Msa0503040:intron
GAGCTTTCCAATATCAACGT+TGG 0.590179 3_4:+45921257 None:intergenic
AGCTCTCAATTCCAGTTCGA+GGG 0.594177 3_4:-45923025 Msa0503040:intron
AAGAATTGAAGAAAACGTTG+AGG 0.595942 3_4:+45925683 None:intergenic
GAGGAACTGGTCCTTCAACT+GGG 0.597731 3_4:+45922479 None:intergenic
GTGGCTGTCCATATGCTAAG+GGG 0.598484 3_4:-45921341 Msa0503040:CDS
TGGAAGCATCAGCAGTGACT+CGG 0.600270 3_4:+45921163 None:intergenic
CCAAATTATCTACTTGTGGA+CGG 0.600561 3_4:+45924591 None:intergenic
ATACACAACTTAATGCATGA+TGG 0.601030 3_4:+45920898 None:intergenic
CACGAGTGACAGCTCGATAG+CGG 0.601591 3_4:+45923057 None:intergenic
TTTCATCGTGTTTCTCCCTG+TGG 0.602715 3_4:+45924248 None:intergenic
GGCAACTTGTCATGGCCAAG+TGG 0.604188 3_4:+45924662 None:intergenic
CCAAACTTGACATGGTGAAG+TGG 0.606059 3_4:+45924690 None:intergenic
TGGCTCCTCCAAACTTGACA+TGG 0.606063 3_4:+45924682 None:intergenic
AATGGCAGTCTTTGAGCCAG+AGG 0.609686 3_4:+45921194 None:intergenic
TGGCTGTCCATATGCTAAGG+GGG 0.610224 3_4:-45921340 Msa0503040:CDS
TAAGTTAGTTGGTTGGTGAG+GGG 0.612642 3_4:+45925849 None:intergenic
ACAGAATACCTTCAAAATGG+AGG 0.613881 3_4:+45920790 None:intergenic
ACACAGCCGAAACATACCCT+TGG 0.613881 3_4:-45924326 Msa0503040:CDS
AGTCCAAGGACTATGACCAC+AGG 0.615138 3_4:-45924264 Msa0503040:CDS
AGGTATGTATCATGCGTTGT+TGG 0.615911 3_4:-45922505 Msa0503040:CDS
TCCTAACTCATCAACGTGAG+TGG 0.618319 3_4:+45920997 None:intergenic
CTTGGTGACACAATTGGGGT+AGG 0.625438 3_4:-45922397 Msa0503040:CDS
GAGGTGACTCTTTCAGTCCA+AGG 0.626999 3_4:-45924278 Msa0503040:CDS
GGCATCAGGAAATGTAGCGA+CGG 0.627133 3_4:-45921319 Msa0503040:CDS
ATAGATGGGAATAAGTGCTG+TGG 0.633320 3_4:-45921385 Msa0503040:intron
AGATAGTTGAAGTTGGACCA+AGG 0.636448 3_4:-45923913 Msa0503040:CDS
GAACCTCTGAACTCTGTCCA+TGG 0.637112 3_4:+45924628 None:intergenic
TTGGACTGAAAGAGTCACCT+CGG 0.641749 3_4:+45924280 None:intergenic
CTCACTTGGTGACACAATTG+GGG 0.642342 3_4:-45922401 Msa0503040:CDS
TTGACTATACTGGTAATCTG+AGG 0.644486 3_4:+45924197 None:intergenic
TGGCAGTCTTTGAGCCAGAG+GGG 0.660951 3_4:+45921196 None:intergenic
GTTGCCAAGCATGAGTACCA+TGG 0.664679 3_4:-45924645 Msa0503040:CDS
GTCCAAGGACTATGACCACA+GGG 0.671076 3_4:-45924263 Msa0503040:CDS
TGGTAATCTGAGGTACAAAG+TGG 0.671809 3_4:+45924207 None:intergenic
CAAGCAGTTCATAACCTGAG+AGG 0.688642 3_4:-45923297 Msa0503040:CDS
GTACCATGGACAGAGTTCAG+AGG 0.731970 3_4:-45924631 Msa0503040:CDS
CAAACAAGAGACATGTCCCG+AGG 0.735346 3_4:-45924297 Msa0503040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATATATTTTTTAAT+TGG + chr3_4:45924276-45924295 None:intergenic 0.0%
!! AAAACTATAACATTATATAT+TGG + chr3_4:45920989-45921008 None:intergenic 10.0%
!! TTATGCTATATATATATAAT+TGG + chr3_4:45922169-45922188 None:intergenic 10.0%
!! TCTATTAAATTATAATTCTT+TGG - chr3_4:45922466-45922485 Msa0503040:CDS 10.0%
!!! TATCTATATTTTACATTTAT+AGG - chr3_4:45923366-45923385 Msa0503040:intron 10.0%
!!! ATCTATATTTTACATTTATA+GGG - chr3_4:45923367-45923386 Msa0503040:intron 10.0%
!!! TTTCATTTATTTTTGTTTAT+TGG - chr3_4:45924766-45924785 Msa0503040:intron 10.0%
!! AAATAAATGAATAAGTTAGT+TGG + chr3_4:45920720-45920739 None:intergenic 15.0%
!!! TTACATTTTTTGAAGTATAT+CGG - chr3_4:45921147-45921166 Msa0503040:exon 15.0%
!!! ACTAAATTTTGCTTATATTT+GGG + chr3_4:45921245-45921264 None:intergenic 15.0%
!! AAGTTAAATAAATATGACAA+AGG + chr3_4:45922812-45922831 None:intergenic 15.0%
!!! TGTAATCATATCTTTTATAA+TGG + chr3_4:45923111-45923130 None:intergenic 15.0%
!!! TCTATATTTTACATTTATAG+GGG - chr3_4:45923368-45923387 Msa0503040:intron 15.0%
!! TCAAATGGTAAAAAAAAAAT+TGG + chr3_4:45923657-45923676 None:intergenic 15.0%
!!! TAAATTTTTATCTTTTTGCT+AGG - chr3_4:45925802-45925821 Msa0503040:five_prime_UTR 15.0%
!! AAAAATGTAATTCATTCCTT+TGG + chr3_4:45921137-45921156 None:intergenic 20.0%
!!! GACTAAATTTTGCTTATATT+TGG + chr3_4:45921246-45921265 None:intergenic 20.0%
!! TCAAAAAAAGTTTATGCATT+TGG - chr3_4:45921264-45921283 Msa0503040:CDS 20.0%
!! ATTTAATTACTCTTCTATGA+TGG - chr3_4:45921392-45921411 Msa0503040:intron 20.0%
!! ATATATAATTGGCAGATAAT+AGG + chr3_4:45922158-45922177 None:intergenic 20.0%
!!! GTGATTTTATCATATTTCTT+TGG - chr3_4:45922550-45922569 Msa0503040:intron 20.0%
!! TATCAATCCCATAAATTAAA+AGG - chr3_4:45922891-45922910 Msa0503040:intron 20.0%
!!! ACCATTACCTTTTAATTTAT+GGG + chr3_4:45922901-45922920 None:intergenic 20.0%
!!! TACCATTACCTTTTAATTTA+TGG + chr3_4:45922902-45922921 None:intergenic 20.0%
!!! TACCATTTGATATTTTCTAT+AGG - chr3_4:45923667-45923686 Msa0503040:intron 20.0%
!! ATCCTATAGAAAATATCAAA+TGG + chr3_4:45923672-45923691 None:intergenic 20.0%
!! GAGTTTAAAAAATACAAAGA+AGG + chr3_4:45923896-45923915 None:intergenic 20.0%
!!! TGTATTTTTTAAACTCAATC+AGG - chr3_4:45923900-45923919 Msa0503040:CDS 20.0%
!!! TGTGGATATTGTAAATTTTA+CGG - chr3_4:45923969-45923988 Msa0503040:intron 20.0%
!!! TTTTATATTAAAGTCGAACT+TGG - chr3_4:45924220-45924239 Msa0503040:CDS 20.0%
!! CAATTACTTGTATAGAAAAA+TGG + chr3_4:45924411-45924430 None:intergenic 20.0%
!!! TTATTATTTTAACTGTGATC+AGG - chr3_4:45924604-45924623 Msa0503040:CDS 20.0%
!!! TTGATAGTTCATTCATTAAT+TGG + chr3_4:45924849-45924868 None:intergenic 20.0%
!! TATCAAACGACTATAATTAA+TGG - chr3_4:45924863-45924882 Msa0503040:intron 20.0%
!!! TGATTTGTTTAATCTTAATC+AGG + chr3_4:45924985-45925004 None:intergenic 20.0%
!! TTTGTTTGCATATAAATAGA+TGG - chr3_4:45925155-45925174 Msa0503040:intron 20.0%
!! TTGTTTGCATATAAATAGAT+GGG - chr3_4:45925156-45925175 Msa0503040:intron 20.0%
!! ATATAGATGTTATCATATCT+TGG + chr3_4:45925415-45925434 None:intergenic 20.0%
!! TAGCATAAAAATATATATCC+AGG - chr3_4:45925451-45925470 Msa0503040:intron 20.0%
!! AAAAACACTACCAAAAAAAA+AGG + chr3_4:45925832-45925851 None:intergenic 20.0%
! AAATGAATAAGTTAGTTGGT+TGG + chr3_4:45920716-45920735 None:intergenic 25.0%
!! GTCTAATTTTCATTCGTTTA+AGG - chr3_4:45920896-45920915 Msa0503040:three_prime_UTR 25.0%
! CTTCAAATTACAGCAAAATA+AGG + chr3_4:45920942-45920961 None:intergenic 25.0%
!!! CTTATTTTGCTGTAATTTGA+AGG - chr3_4:45920940-45920959 Msa0503040:three_prime_UTR 25.0%
!! ACAGTACAATGTAGTTTTTA+TGG - chr3_4:45921188-45921207 Msa0503040:CDS 25.0%
! TAGATTTCACCATATAGAAT+AGG - chr3_4:45921716-45921735 Msa0503040:intron 25.0%
! TAATAAGTGCCTATTCTATA+TGG + chr3_4:45921728-45921747 None:intergenic 25.0%
! ATCATATTTCTTTGGTTAGT+TGG - chr3_4:45922558-45922577 Msa0503040:intron 25.0%
! TTTGTTAAGATAGTTGAAGT+TGG - chr3_4:45922635-45922654 Msa0503040:intron 25.0%
! AATTCAATCTTTACATCTGT+TGG + chr3_4:45922698-45922717 None:intergenic 25.0%
! GATATTATGAATGATTGTTG+TGG - chr3_4:45922832-45922851 Msa0503040:intron 25.0%
! TCCCATAAATTAAAAGGTAA+TGG - chr3_4:45922897-45922916 Msa0503040:intron 25.0%
! TTGAGCACAAATAAAAAGTA+GGG + chr3_4:45922981-45923000 None:intergenic 25.0%
! AATATAGATAAGACATCTGA+AGG + chr3_4:45923356-45923375 None:intergenic 25.0%
! ATTAAAGTGGAGATATTTGA+TGG + chr3_4:45923588-45923607 None:intergenic 25.0%
! ACTTGCAAGTTATATTAAAG+TGG + chr3_4:45923601-45923620 None:intergenic 25.0%
! CATAGAATTTGATGTCTTAT+GGG + chr3_4:45923803-45923822 None:intergenic 25.0%
! TCATAGAATTTGATGTCTTA+TGG + chr3_4:45923804-45923823 None:intergenic 25.0%
!!! ATTGTTGTTTTGAGATGATT+TGG - chr3_4:45923858-45923877 Msa0503040:CDS 25.0%
! ATTTACAATATCCACACAAA+GGG + chr3_4:45923965-45923984 None:intergenic 25.0%
! AATTTACAATATCCACACAA+AGG + chr3_4:45923966-45923985 None:intergenic 25.0%
!! AAGTCTTTGAAAATACGAAA+TGG + chr3_4:45924366-45924385 None:intergenic 25.0%
! TAATTGAAAGCAGAAATCAA+AGG - chr3_4:45924425-45924444 Msa0503040:intron 25.0%
! AATTGAAAGCAGAAATCAAA+GGG - chr3_4:45924426-45924445 Msa0503040:intron 25.0%
! TCAAACATTTAATTGAGACT+AGG - chr3_4:45924501-45924520 Msa0503040:intron 25.0%
!! TCAGAAAGAGTATGTATATT+CGG + chr3_4:45924580-45924599 None:intergenic 25.0%
!! TATTTGTTAACTTACTTGGA+GGG + chr3_4:45924737-45924756 None:intergenic 25.0%
!! AAGCTATTTGTTAACTTACT+TGG + chr3_4:45924741-45924760 None:intergenic 25.0%
! ACACATTACATATATAGAAG+AGG + chr3_4:45924816-45924835 None:intergenic 25.0%
! AATACCATGTACATTAGATT+TGG - chr3_4:45924905-45924924 Msa0503040:intron 25.0%
! AAATCCAAATCTAATGTACA+TGG + chr3_4:45924912-45924931 None:intergenic 25.0%
!! TAGAATGTTTAACTTTAAGC+TGG - chr3_4:45925083-45925102 Msa0503040:intron 25.0%
!! AGAATGTTTAACTTTAAGCT+GGG - chr3_4:45925084-45925103 Msa0503040:intron 25.0%
!! TTTTGTTCTTCTTCTATAAC+TGG + chr3_4:45925535-45925554 None:intergenic 25.0%
! ATGATGTATAGTTAGCTATA+CGG - chr3_4:45925678-45925697 Msa0503040:five_prime_UTR 25.0%
!! ATTATTTACCTCCATTTTGA+AGG - chr3_4:45925757-45925776 Msa0503040:five_prime_UTR 25.0%
! TTTACAGAATACCTTCAAAA+TGG + chr3_4:45925771-45925790 None:intergenic 25.0%
ATTCAAATTCCCCAATTTCT+AGG - chr3_4:45920830-45920849 Msa0503040:three_prime_UTR 30.0%
TTCAAATTCCCCAATTTCTA+GGG - chr3_4:45920831-45920850 Msa0503040:three_prime_UTR 30.0%
TATACGAAACCCTAGAAATT+GGG + chr3_4:45920843-45920862 None:intergenic 30.0%
TTATACGAAACCCTAGAAAT+TGG + chr3_4:45920844-45920863 None:intergenic 30.0%
AGAATTGAAGAAAACGTTGA+GGG + chr3_4:45920874-45920893 None:intergenic 30.0%
AAGAATTGAAGAAAACGTTG+AGG + chr3_4:45920875-45920894 None:intergenic 30.0%
! CAATTGTGATTAGTTGAATG+AGG - chr3_4:45921078-45921097 Msa0503040:three_prime_UTR 30.0%
TCTTTGACATGTTAAACCAA+AGG - chr3_4:45921118-45921137 Msa0503040:three_prime_UTR 30.0%
!! ATTTTGCTTATATTTGGGAC+CGG + chr3_4:45921240-45921259 None:intergenic 30.0%
!! CTTTTGCTTATATTTGAGAC+CGG - chr3_4:45921321-45921340 Msa0503040:CDS 30.0%
TACTCTTCTATGATGGTTAA+TGG - chr3_4:45921399-45921418 Msa0503040:intron 30.0%
! AGTTTTGCTCTGCATTTAAT+TGG - chr3_4:45921606-45921625 Msa0503040:intron 30.0%
! GTTTTGCTCTGCATTTAATT+GGG - chr3_4:45921607-45921626 Msa0503040:intron 30.0%
! TTTTGCTCTGCATTTAATTG+GGG - chr3_4:45921608-45921627 Msa0503040:intron 30.0%
CTAAATACAACTACAAGCAA+AGG + chr3_4:45921699-45921718 None:intergenic 30.0%
ATACCCAAATTATCTACTTG+TGG + chr3_4:45921971-45921990 None:intergenic 30.0%
ACAAGTAGATAATTTGGGTA+TGG - chr3_4:45921970-45921989 Msa0503040:intron 30.0%
CAAGTAGATAATTTGGGTAT+GGG - chr3_4:45921971-45921990 Msa0503040:intron 30.0%
CAGGAGTTAATGTAAAGTAA+AGG + chr3_4:45922121-45922140 None:intergenic 30.0%
TAACAAAGACATGCAAGATA+TGG - chr3_4:45922389-45922408 Msa0503040:CDS 30.0%
AAGTTTAAATTCACTGCAGT+TGG - chr3_4:45922528-45922547 Msa0503040:intron 30.0%
TCAACTATCTTAACAAACTC+AGG + chr3_4:45922632-45922651 None:intergenic 30.0%
!!! TAGTTTTGTATCTCCCAAAT+GGG - chr3_4:45922763-45922782 Msa0503040:intron 30.0%
GCGTTATAATATATACCTGT+GGG + chr3_4:45922790-45922809 None:intergenic 30.0%
! AAAAGTAGGGGAAATCATTT+TGG + chr3_4:45922968-45922987 None:intergenic 30.0%
TGAGCACAAATAAAAAGTAG+GGG + chr3_4:45922980-45922999 None:intergenic 30.0%
GTTGAGCACAAATAAAAAGT+AGG + chr3_4:45922982-45923001 None:intergenic 30.0%
! TGTTCGGATTGAATGATTTT+GGG + chr3_4:45923050-45923069 None:intergenic 30.0%
CACATCACAGTAGAAATAAT+TGG + chr3_4:45923175-45923194 None:intergenic 30.0%
TTTAAATTAGGAGTCAGAAC+TGG + chr3_4:45923294-45923313 None:intergenic 30.0%
! AGTTCTGACTCCTAATTTAA+AGG - chr3_4:45923293-45923312 Msa0503040:CDS 30.0%
GATAGTTGCACCTTTAAATT+AGG + chr3_4:45923306-45923325 None:intergenic 30.0%
! TGATGGATGCTTAGAATAAT+GGG + chr3_4:45923571-45923590 None:intergenic 30.0%
! TTGATGGATGCTTAGAATAA+TGG + chr3_4:45923572-45923591 None:intergenic 30.0%
! AAGTTCATCTGAAATTGAAC+TGG - chr3_4:45923752-45923771 Msa0503040:intron 30.0%
TCTGTTGTACTTATTCCAAT+CGG - chr3_4:45924008-45924027 Msa0503040:intron 30.0%
!! AATTTAAATACAGCACCGAT+TGG + chr3_4:45924026-45924045 None:intergenic 30.0%
!! ATCGGTGCTGTATTTAAATT+TGG - chr3_4:45924026-45924045 Msa0503040:intron 30.0%
GTGCTGTATTTAAATTTGGT+AGG - chr3_4:45924030-45924049 Msa0503040:intron 30.0%
! AGCTAAAGCACTATATGATA+TGG - chr3_4:45924118-45924137 Msa0503040:intron 30.0%
! GCTAAAGCACTATATGATAT+GGG - chr3_4:45924119-45924138 Msa0503040:intron 30.0%
CAGAAATCAAAGGGAAAATA+AGG - chr3_4:45924435-45924454 Msa0503040:intron 30.0%
TAATTGAGACTAGGAAGAAT+TGG - chr3_4:45924510-45924529 Msa0503040:intron 30.0%
AATTGAGACTAGGAAGAATT+GGG - chr3_4:45924511-45924530 Msa0503040:intron 30.0%
TATGTATATTCGGGATTAAG+AGG + chr3_4:45924570-45924589 None:intergenic 30.0%
! CAGAAAGAGTATGTATATTC+GGG + chr3_4:45924579-45924598 None:intergenic 30.0%
! CTATTTGTTAACTTACTTGG+AGG + chr3_4:45924738-45924757 None:intergenic 30.0%
! CAGTTATTAATGGACATTCT+TGG - chr3_4:45925132-45925151 Msa0503040:intron 30.0%
ATCAAAACCAACGTTGATAT+TGG - chr3_4:45925291-45925310 Msa0503040:intron 30.0%
CATATAGAATGATATCCCAT+TGG + chr3_4:45925485-45925504 None:intergenic 30.0%
ATACACAACTTAATGCATGA+TGG + chr3_4:45925660-45925679 None:intergenic 30.0%
!! TTTGAAGGTATTCTGTAAAG+TGG - chr3_4:45925772-45925791 Msa0503040:five_prime_UTR 30.0%
!!! TTTTGGTAGTGTTTTTTGCT+AGG - chr3_4:45925836-45925855 Msa0503040:five_prime_UTR 30.0%
!! ATAAGTTAGTTGGTTGGTGA+GGG + chr3_4:45920710-45920729 None:intergenic 35.0%
! AATAAGTTAGTTGGTTGGTG+AGG + chr3_4:45920711-45920730 None:intergenic 35.0%
AAGAAGAACGCGAAGAATAA+AGG + chr3_4:45920774-45920793 None:intergenic 35.0%
ATACGAAACCCTAGAAATTG+GGG + chr3_4:45920842-45920861 None:intergenic 35.0%
GCTGTAATTTGAAGGCAATT+TGG - chr3_4:45920948-45920967 Msa0503040:three_prime_UTR 35.0%
GTAATTTGAAGGCAATTTGG+TGG - chr3_4:45920951-45920970 Msa0503040:three_prime_UTR 35.0%
AATATGCATTCTCTGCTTTG+GGG + chr3_4:45921214-45921233 None:intergenic 35.0%
CAATATGCATTCTCTGCTTT+GGG + chr3_4:45921215-45921234 None:intergenic 35.0%
TCAATATGCATTCTCTGCTT+TGG + chr3_4:45921216-45921235 None:intergenic 35.0%
CTTCTATGATGGTTAATGGA+AGG - chr3_4:45921403-45921422 Msa0503040:intron 35.0%
!! AAAACCCACATTAGTTTGTC+TGG - chr3_4:45921492-45921511 Msa0503040:intron 35.0%
AACTAATCCAGTCAAAAGAC+CGG + chr3_4:45921673-45921692 None:intergenic 35.0%
GTATATATTTCCCTACAACC+TGG - chr3_4:45921759-45921778 Msa0503040:intron 35.0%
ATGATTTCTACCATTTCACC+AGG + chr3_4:45921780-45921799 None:intergenic 35.0%
CCAAATTATCTACTTGTGGA+CGG + chr3_4:45921967-45921986 None:intergenic 35.0%
CGTCCACAAGTAGATAATTT+GGG - chr3_4:45921965-45921984 Msa0503040:intron 35.0%
! ATGGGAAACTGCTTTATTGA+AGG - chr3_4:45921989-45922008 Msa0503040:intron 35.0%
ATAGGTCAGTAATACATGAC+AGG + chr3_4:45922140-45922159 None:intergenic 35.0%
TTGACTATACTGGTAATCTG+AGG + chr3_4:45922361-45922380 None:intergenic 35.0%
!! TATTGCGCTTTTGACTATAC+TGG + chr3_4:45922371-45922390 None:intergenic 35.0%
CATGCAAGATATGGCATATA+AGG - chr3_4:45922398-45922417 Msa0503040:CDS 35.0%
ATGGCATATAAGGTATGCAA+TGG - chr3_4:45922408-45922427 Msa0503040:CDS 35.0%
TGTGCAATGCAGTTTATGAA+AGG - chr3_4:45922602-45922621 Msa0503040:intron 35.0%
ATTCATAGACTAGCATCTAC+TGG - chr3_4:45922719-45922738 Msa0503040:intron 35.0%
TTCATAGACTAGCATCTACT+GGG - chr3_4:45922720-45922739 Msa0503040:intron 35.0%
!!! CTAGTTTTGTATCTCCCAAA+TGG - chr3_4:45922762-45922781 Msa0503040:intron 35.0%
GGCGTTATAATATATACCTG+TGG + chr3_4:45922791-45922810 None:intergenic 35.0%
!!! TTGAATGATTTTGGGGTGAA+TGG + chr3_4:45923042-45923061 None:intergenic 35.0%
! GTTCGGATTGAATGATTTTG+GGG + chr3_4:45923049-45923068 None:intergenic 35.0%
! CTGTTCGGATTGAATGATTT+TGG + chr3_4:45923051-45923070 None:intergenic 35.0%
AAATCGAATGACATTGAAGC+AGG + chr3_4:45923205-45923224 None:intergenic 35.0%
CATTCGATTTATGTCTCAGT+TGG - chr3_4:45923215-45923234 Msa0503040:intron 35.0%
GATGGATGCTTAGAATAATG+GGG + chr3_4:45923570-45923589 None:intergenic 35.0%
! TATAACTTGCAAGTTGCAAG+TGG - chr3_4:45923607-45923626 Msa0503040:intron 35.0%
! ATAACTTGCAAGTTGCAAGT+GGG - chr3_4:45923608-45923627 Msa0503040:intron 35.0%
CGAATATAGAGAAGATTGCA+GGG + chr3_4:45923707-45923726 None:intergenic 35.0%
CCTGCAATCTTCTCTATATT+CGG - chr3_4:45923705-45923724 Msa0503040:intron 35.0%
ATGTCTTATGGGATAGCATT+AGG + chr3_4:45923792-45923811 None:intergenic 35.0%
ACAGATATAGATGTTGAGAC+TGG + chr3_4:45923838-45923857 None:intergenic 35.0%
TGTAACTGTTAAGACCTTGA+CGG + chr3_4:45923931-45923950 None:intergenic 35.0%
!!! ACATAAGCTACTTTTGATGG+AGG + chr3_4:45924098-45924117 None:intergenic 35.0%
!!! GCTACATAAGCTACTTTTGA+TGG + chr3_4:45924101-45924120 None:intergenic 35.0%
AAGTTTGTGCTTAATTGGGT+TGG + chr3_4:45924300-45924319 None:intergenic 35.0%
AACCCAATTAAGCACAAACT+TGG - chr3_4:45924299-45924318 Msa0503040:CDS 35.0%
ACCCAATTAAGCACAAACTT+GGG - chr3_4:45924300-45924319 Msa0503040:CDS 35.0%
ACCCAAGTTTGTGCTTAATT+GGG + chr3_4:45924304-45924323 None:intergenic 35.0%
AACCCAAGTTTGTGCTTAAT+TGG + chr3_4:45924305-45924324 None:intergenic 35.0%
ATTGAGACTAGGAAGAATTG+GGG - chr3_4:45924512-45924531 Msa0503040:intron 35.0%
GGAGACAAGAATATTTGGAA+GGG + chr3_4:45924716-45924735 None:intergenic 35.0%
! AGATTTGGATTTTCTGCAGT+TGG - chr3_4:45924920-45924939 Msa0503040:intron 35.0%
!! TTTTCTAGTCGTAAGGAATC+TGG - chr3_4:45925047-45925066 Msa0503040:intron 35.0%
! TGGGTCTGCATTTTATGATT+CGG - chr3_4:45925103-45925122 Msa0503040:intron 35.0%
TCGGTAGTCTCAGTTATTAA+TGG - chr3_4:45925122-45925141 Msa0503040:intron 35.0%
ACAGAATACCTTCAAAATGG+AGG + chr3_4:45925768-45925787 None:intergenic 35.0%
!!! GCTAGGTTAGCCTTTTTTTT+TGG - chr3_4:45925819-45925838 Msa0503040:five_prime_UTR 35.0%
!! TAAGTTAGTTGGTTGGTGAG+GGG + chr3_4:45920709-45920728 None:intergenic 40.0%
GAAGAAAACGTTGAGGGATA+GGG + chr3_4:45920868-45920887 None:intergenic 40.0%
TGAAGAAAACGTTGAGGGAT+AGG + chr3_4:45920869-45920888 None:intergenic 40.0%
GCAGAGAATGCATATTGATC+CGG - chr3_4:45921218-45921237 Msa0503040:CDS 40.0%
! TGCTTATATTTGAGACCGGA+AGG - chr3_4:45921325-45921344 Msa0503040:CDS 40.0%
AAGCTAAGACATACTCCTTC+CGG + chr3_4:45921343-45921362 None:intergenic 40.0%
!! GAGTATGTCTTAGCTTGCTA+TGG - chr3_4:45921347-45921366 Msa0503040:CDS 40.0%
!! ATGTCTTAGCTTGCTATGGA+TGG - chr3_4:45921351-45921370 Msa0503040:CDS 40.0%
!! TGTCTTAGCTTGCTATGGAT+GGG - chr3_4:45921352-45921371 Msa0503040:CDS 40.0%
ACCACCAGACAAACTAATGT+GGG + chr3_4:45921499-45921518 None:intergenic 40.0%
!! ATGGACTAGCCAACTGAAAT+TGG + chr3_4:45921582-45921601 None:intergenic 40.0%
ATGCAGAGCAAAACTCTGTA+TGG + chr3_4:45921601-45921620 None:intergenic 40.0%
!!! GGTCTTTTGACTGGATTAGT+TGG - chr3_4:45921672-45921691 Msa0503040:intron 40.0%
TACCATTTCACCAGGTTGTA+GGG + chr3_4:45921772-45921791 None:intergenic 40.0%
CCGTCCACAAGTAGATAATT+TGG - chr3_4:45921964-45921983 Msa0503040:intron 40.0%
TCTTCATTGTCTTCACTGCA+CGG + chr3_4:45922207-45922226 None:intergenic 40.0%
!! CCTTTTCCAAGGGTATGTTT+CGG + chr3_4:45922238-45922257 None:intergenic 40.0%
!! CTCTTGTTTGCCTTTTCCAA+GGG + chr3_4:45922248-45922267 None:intergenic 40.0%
!! TCTCTTGTTTGCCTTTTCCA+AGG + chr3_4:45922249-45922268 None:intergenic 40.0%
GGGAGAAACACGATGAAATT+TGG - chr3_4:45922312-45922331 Msa0503040:intron 40.0%
! TGGTAATCTGAGGTACAAAG+TGG + chr3_4:45922351-45922370 None:intergenic 40.0%
TATAAGGTATGCAATGGCAG+CGG - chr3_4:45922414-45922433 Msa0503040:CDS 40.0%
AGATAGTTGAAGTTGGACCA+AGG - chr3_4:45922642-45922661 Msa0503040:intron 40.0%
GATAGTTGAAGTTGGACCAA+GGG - chr3_4:45922643-45922662 Msa0503040:intron 40.0%
! TCATTTTGCAATCCATCCCT+TGG + chr3_4:45922662-45922681 None:intergenic 40.0%
TACTGGGTTATCTGTCATTG+AGG - chr3_4:45922736-45922755 Msa0503040:intron 40.0%
GGATCTGTTGGGAAGAAAAA+TGG + chr3_4:45923021-45923040 None:intergenic 40.0%
GTAAATGCGTAAGGTCTGTT+CGG + chr3_4:45923066-45923085 None:intergenic 40.0%
AACTGTGCAGTAAATGCGTA+AGG + chr3_4:45923075-45923094 None:intergenic 40.0%
AACTGGAATTGAGAGCTCTT+TGG + chr3_4:45923527-45923546 None:intergenic 40.0%
CCGAATATAGAGAAGATTGC+AGG + chr3_4:45923708-45923727 None:intergenic 40.0%
GCAATCTTCTCTATATTCGG+TGG - chr3_4:45923708-45923727 Msa0503040:intron 40.0%
!!! GTTTTGAGATGATTTGGCAC+TGG - chr3_4:45923864-45923883 Msa0503040:CDS 40.0%
AGGTATGTATCATGCGTTGT+TGG - chr3_4:45924050-45924069 Msa0503040:intron 40.0%
! GGTTGTTTCGAAATCTCACT+TGG - chr3_4:45924140-45924159 Msa0503040:intron 40.0%
! ATCTCACTTGGTGACACAAT+TGG - chr3_4:45924152-45924171 Msa0503040:intron 40.0%
! TCTCACTTGGTGACACAATT+GGG - chr3_4:45924153-45924172 Msa0503040:intron 40.0%
AAGCCATCTAACTCATTACC+TGG + chr3_4:45924188-45924207 None:intergenic 40.0%
!! AGCCAAAAGCATTGGAACTA+CGG + chr3_4:45924632-45924651 None:intergenic 40.0%
!! TCCAATGCTTTTGGCTGTAA+TGG - chr3_4:45924636-45924655 Msa0503040:CDS 40.0%
GTCCACTTTCATGACACATA+CGG - chr3_4:45924685-45924704 Msa0503040:exon 40.0%
TCCACTTTCATGACACATAC+GGG - chr3_4:45924686-45924705 Msa0503040:exon 40.0%
GGGAGACAAGAATATTTGGA+AGG + chr3_4:45924717-45924736 None:intergenic 40.0%
TGGAGGGAGACAAGAATATT+TGG + chr3_4:45924721-45924740 None:intergenic 40.0%
!! CTCAGGATTTTCTAGTCGTA+AGG - chr3_4:45925040-45925059 Msa0503040:intron 40.0%
! ATAGATGGGAATAAGTGCTG+TGG - chr3_4:45925170-45925189 Msa0503040:intron 40.0%
GATGTTGTGTACATGCTGAA+TGG - chr3_4:45925261-45925280 Msa0503040:intron 40.0%
GAGCTTTCCAATATCAACGT+TGG + chr3_4:45925301-45925320 None:intergenic 40.0%
TATCCAGGTGATTCAACCAA+TGG - chr3_4:45925466-45925485 Msa0503040:intron 40.0%
ATCCAGGTGATTCAACCAAT+GGG - chr3_4:45925467-45925486 Msa0503040:intron 40.0%
!! GAGAAGCTTGCATTTGCTAT+TGG + chr3_4:45925605-45925624 None:intergenic 40.0%
! TGCTATGGATGGGCAAGTTT+TGG - chr3_4:45921362-45921381 Msa0503040:CDS 45.0%
!! ACCCACATTAGTTTGTCTGG+TGG - chr3_4:45921495-45921514 Msa0503040:intron 45.0%
CACCACCAGACAAACTAATG+TGG + chr3_4:45921500-45921519 None:intergenic 45.0%
! CTTGAGAGAAGTACACTCCA+AGG + chr3_4:45921534-45921553 None:intergenic 45.0%
CTTGGAGTGTACTTCTCTCA+AGG - chr3_4:45921532-45921551 Msa0503040:intron 45.0%
TGTACTTCTCTCAAGGTCTC+AGG - chr3_4:45921539-45921558 Msa0503040:intron 45.0%
TAGCCAACTGAAATTGGCAC+CGG + chr3_4:45921576-45921595 None:intergenic 45.0%
TTCCCTACAACCTGGTGAAA+TGG - chr3_4:45921767-45921786 Msa0503040:intron 45.0%
CTACCATTTCACCAGGTTGT+AGG + chr3_4:45921773-45921792 None:intergenic 45.0%
GTGGATGAGAGAAACAAAGC+TGG + chr3_4:45921849-45921868 None:intergenic 45.0%
CCAAACTTGACATGGTGAAG+TGG + chr3_4:45921868-45921887 None:intergenic 45.0%
CCACTTCACCATGTCAAGTT+TGG - chr3_4:45921865-45921884 Msa0503040:CDS 45.0%
CTTCACCATGTCAAGTTTGG+AGG - chr3_4:45921868-45921887 Msa0503040:CDS 45.0%
TCATGCTTGGCAACTTGTCA+TGG + chr3_4:45921904-45921923 None:intergenic 45.0%
AGAGTTCAGAGGTTCTCATC+TGG - chr3_4:45921935-45921954 Msa0503040:intron 45.0%
CCGAAACATACCCTTGGAAA+AGG - chr3_4:45922235-45922254 Msa0503040:intron 45.0%
TTGGACTGAAAGAGTCACCT+CGG + chr3_4:45922278-45922297 None:intergenic 45.0%
TTTCATCGTGTTTCTCCCTG+TGG + chr3_4:45922310-45922329 None:intergenic 45.0%
TATACCTGTGGGACCCATTT+GGG + chr3_4:45922779-45922798 None:intergenic 45.0%
ATATACCTGTGGGACCCATT+TGG + chr3_4:45922780-45922799 None:intergenic 45.0%
TTGGGGTGAATGGATCTGTT+GGG + chr3_4:45923032-45923051 None:intergenic 45.0%
! TTTGGGGTGAATGGATCTGT+TGG + chr3_4:45923033-45923052 None:intergenic 45.0%
CAAGCAGTTCATAACCTGAG+AGG - chr3_4:45923258-45923277 Msa0503040:intron 45.0%
AGCTCTCAATTCCAGTTCGA+GGG - chr3_4:45923530-45923549 Msa0503040:intron 45.0%
CAAAATGCATACCCTCGAAC+TGG + chr3_4:45923544-45923563 None:intergenic 45.0%
CATGTGAAAGTCCCTTTGTG+TGG - chr3_4:45923951-45923970 Msa0503040:intron 45.0%
!!! GCTACTTTTGATGGAGGAAC+TGG + chr3_4:45924092-45924111 None:intergenic 45.0%
! CTCACTTGGTGACACAATTG+GGG - chr3_4:45924154-45924173 Msa0503040:intron 45.0%
ACGCCAGGTAATGAGTTAGA+TGG - chr3_4:45924182-45924201 Msa0503040:CDS 45.0%
! CACCGTAGTTCCAATGCTTT+TGG - chr3_4:45924627-45924646 Msa0503040:CDS 45.0%
! GCCATTACAGCCAAAAGCAT+TGG + chr3_4:45924640-45924659 None:intergenic 45.0%
! TGGACAGCAAGCTTTTCTGT+TGG + chr3_4:45924670-45924689 None:intergenic 45.0%
CTGCTAGAGATACATGACTG+TGG - chr3_4:45925013-45925032 Msa0503040:intron 45.0%
TACATGACTGTGGCAAACTC+AGG - chr3_4:45925023-45925042 Msa0503040:intron 45.0%
! GATTCTTCAGTTGCTGGTCT+TGG - chr3_4:45925192-45925211 Msa0503040:intron 45.0%
! GTGTACATGCTGAATGGACT+TGG - chr3_4:45925267-45925286 Msa0503040:intron 45.0%
ATTGGAAAGCTCATGTCAGC+TGG - chr3_4:45925309-45925328 Msa0503040:intron 45.0%
!! ATCAGCAGTGACTCGGTTAA+GGG + chr3_4:45925388-45925407 None:intergenic 45.0%
! ATCCCATTGGTTGAATCACC+TGG + chr3_4:45925472-45925491 None:intergenic 45.0%
! TCCACTCACGTTGATGAGTT+AGG - chr3_4:45925557-45925576 Msa0503040:intron 45.0%
TCCTAACTCATCAACGTGAG+TGG + chr3_4:45925561-45925580 None:intergenic 45.0%
!! TTAGTTGGTTGGTGAGGGGA+TGG + chr3_4:45920705-45920724 None:intergenic 50.0%
AAGTACACTCCAAGGTCCCA+AGG + chr3_4:45921526-45921545 None:intergenic 50.0%
AGCCAACTGAAATTGGCACC+GGG + chr3_4:45921575-45921594 None:intergenic 50.0%
!! GATTGGTCTCCTGGATTAGC+CGG - chr3_4:45921651-45921670 Msa0503040:intron 50.0%
GTCAAAAGACCGGCTAATCC+AGG + chr3_4:45921663-45921682 None:intergenic 50.0%
!!! GGATTAGCCGGTCTTTTGAC+TGG - chr3_4:45921663-45921682 Msa0503040:intron 50.0%
TGGCTCCTCCAAACTTGACA+TGG + chr3_4:45921876-45921895 None:intergenic 50.0%
TCAAGTTTGGAGGAGCCACT+TGG - chr3_4:45921878-45921897 Msa0503040:CDS 50.0%
GTTGCCAAGCATGAGTACCA+TGG - chr3_4:45921910-45921929 Msa0503040:CDS 50.0%
CTGTCCATGGTACTCATGCT+TGG + chr3_4:45921917-45921936 None:intergenic 50.0%
GTACCATGGACAGAGTTCAG+AGG - chr3_4:45921924-45921943 Msa0503040:CDS 50.0%
GAACCTCTGAACTCTGTCCA+TGG + chr3_4:45921930-45921949 None:intergenic 50.0%
ACACAGCCGAAACATACCCT+TGG - chr3_4:45922229-45922248 Msa0503040:intron 50.0%
CAAACAAGAGACATGTCCCG+AGG - chr3_4:45922258-45922277 Msa0503040:intron 50.0%
TGGACTGAAAGAGTCACCTC+GGG + chr3_4:45922277-45922296 None:intergenic 50.0%
GAGGTGACTCTTTCAGTCCA+AGG - chr3_4:45922277-45922296 Msa0503040:intron 50.0%
AGTCCAAGGACTATGACCAC+AGG - chr3_4:45922291-45922310 Msa0503040:intron 50.0%
GTCCAAGGACTATGACCACA+GGG - chr3_4:45922292-45922311 Msa0503040:intron 50.0%
GCAGCGGTACTTTCTGTTCA+AGG - chr3_4:45922430-45922449 Msa0503040:CDS 50.0%
GTTGAAGTTGGACCAAGGGA+TGG - chr3_4:45922647-45922666 Msa0503040:intron 50.0%
! TTTGAAGCTGCTGTTGCTGC+TGG - chr3_4:45923391-45923410 Msa0503040:intron 50.0%
GAGCTCTCAATTCCAGTTCG+AGG - chr3_4:45923529-45923548 Msa0503040:intron 50.0%
TCAATCAGGTCAAGCCGTCA+AGG - chr3_4:45923914-45923933 Msa0503040:CDS 50.0%
GTTGTTGGATGCCCAGTTGA+AGG - chr3_4:45924065-45924084 Msa0503040:intron 50.0%
GAGGAACTGGTCCTTCAACT+GGG + chr3_4:45924079-45924098 None:intergenic 50.0%
! CTTGGTGACACAATTGGGGT+AGG - chr3_4:45924158-45924177 Msa0503040:CDS 50.0%
GCCCGTATGTGTCATGAAAG+TGG + chr3_4:45924690-45924709 None:intergenic 50.0%
GCTGTGGATTCTTCAGTTGC+TGG - chr3_4:45925186-45925205 Msa0503040:intron 50.0%
!! TCTTCAGTTGCTGGTCTTGG+TGG - chr3_4:45925195-45925214 Msa0503040:intron 50.0%
TGGTGGCTGTCCATATGCTA+AGG - chr3_4:45925212-45925231 Msa0503040:intron 50.0%
GGTGGCTGTCCATATGCTAA+GGG - chr3_4:45925213-45925232 Msa0503040:intron 50.0%
GTGGCTGTCCATATGCTAAG+GGG - chr3_4:45925214-45925233 Msa0503040:intron 50.0%
TGGCTGTCCATATGCTAAGG+GGG - chr3_4:45925215-45925234 Msa0503040:intron 50.0%
GGCATCAGGAAATGTAGCGA+CGG - chr3_4:45925236-45925255 Msa0503040:intron 50.0%
ATGTCAGCTGGCGACTTCAT+CGG - chr3_4:45925321-45925340 Msa0503040:intron 50.0%
GACTTCATCGGCAAGCAGTT+GGG - chr3_4:45925333-45925352 Msa0503040:intron 50.0%
ACTTCATCGGCAAGCAGTTG+GGG - chr3_4:45925334-45925353 Msa0503040:intron 50.0%
ATGGCAGTCTTTGAGCCAGA+GGG + chr3_4:45925363-45925382 None:intergenic 50.0%
AATGGCAGTCTTTGAGCCAG+AGG + chr3_4:45925364-45925383 None:intergenic 50.0%
!! AGTGACTCGGTTAAGGGCAA+TGG + chr3_4:45925382-45925401 None:intergenic 50.0%
!! CATCAGCAGTGACTCGGTTA+AGG + chr3_4:45925389-45925408 None:intergenic 50.0%
!! TGGAAGCATCAGCAGTGACT+CGG + chr3_4:45925395-45925414 None:intergenic 50.0%
! TTTGTCTGGTGGTGCAGCCT+TGG - chr3_4:45921506-45921525 Msa0503040:intron 55.0%
! TTGTCTGGTGGTGCAGCCTT+GGG - chr3_4:45921507-45921526 Msa0503040:intron 55.0%
! CAACTGAAATTGGCACCGGG+AGG + chr3_4:45921572-45921591 None:intergenic 55.0%
! CTCCCGGTGCCAATTTCAGT+TGG - chr3_4:45921570-45921589 Msa0503040:intron 55.0%
! AATCACACCGTCGACTAGCG+GGG + chr3_4:45921635-45921654 None:intergenic 55.0%
! CAATCACACCGTCGACTAGC+GGG + chr3_4:45921636-45921655 None:intergenic 55.0%
! CCAATCACACCGTCGACTAG+CGG + chr3_4:45921637-45921656 None:intergenic 55.0%
GGCAACTTGTCATGGCCAAG+TGG + chr3_4:45921896-45921915 None:intergenic 55.0%
CTCCCTGTGGTCATAGTCCT+TGG + chr3_4:45922297-45922316 None:intergenic 55.0%
ATCTCCCAAATGGGTCCCAC+AGG - chr3_4:45922772-45922791 Msa0503040:intron 55.0%
CTGGCAATCTGATGCCTCTC+AGG + chr3_4:45923275-45923294 None:intergenic 55.0%
ACGAGTGACAGCTCGATAGC+GGG + chr3_4:45923500-45923519 None:intergenic 55.0%
CACGAGTGACAGCTCGATAG+CGG + chr3_4:45923501-45923520 None:intergenic 55.0%
GGAGGAACTGGTCCTTCAAC+TGG + chr3_4:45924080-45924099 None:intergenic 55.0%
TGCATGGCTGCGGCAAATTC+AGG + chr3_4:45924951-45924970 None:intergenic 55.0%
CCTGATGCCCCCTTAGCATA+TGG + chr3_4:45925225-45925244 None:intergenic 55.0%
!! CCATATGCTAAGGGGGCATC+AGG - chr3_4:45925222-45925241 Msa0503040:intron 55.0%
CGACTTCATCGGCAAGCAGT+TGG - chr3_4:45925332-45925351 Msa0503040:intron 55.0%
TGGCAGTCTTTGAGCCAGAG+GGG + chr3_4:45925362-45925381 None:intergenic 55.0%
GTCTCAGGTGCGAATCCTCC+CGG - chr3_4:45921554-45921573 Msa0503040:intron 60.0%
! ATCACACCGTCGACTAGCGG+GGG + chr3_4:45921634-45921653 None:intergenic 60.0%
CCGCTAGTCGACGGTGTGAT+TGG - chr3_4:45921634-45921653 Msa0503040:intron 60.0%
!! CGACGGTGTGATTGGTCTCC+TGG - chr3_4:45921642-45921661 Msa0503040:intron 60.0%
ACAATTGGGGTAGGCACGCC+AGG - chr3_4:45924167-45924186 Msa0503040:CDS 60.0%
TTGCCGCAGCCATGCATCTC+AGG - chr3_4:45924955-45924974 Msa0503040:intron 60.0%
TGCCGCAGCCATGCATCTCA+GGG - chr3_4:45924956-45924975 Msa0503040:intron 60.0%
AGCCCTGAGATGCATGGCTG+CGG + chr3_4:45924961-45924980 None:intergenic 60.0%
TCAGGCAGCCCTGAGATGCA+TGG + chr3_4:45924967-45924986 None:intergenic 60.0%
GTGGTGCAGCCTTGGGACCT+TGG - chr3_4:45921514-45921533 Msa0503040:intron 65.0%
TTGGGGCCCCCGCTAGTCGA+CGG - chr3_4:45921625-45921644 Msa0503040:intron 70.0%
! AAGCAGTTGGGGCGCCCCTC+TGG - chr3_4:45925345-45925364 Msa0503040:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 45920702 45925875 45920702 ID=Msa0503040;Name=Msa0503040
chr3_4 mRNA 45920702 45925875 45920702 ID=Msa0503040-mRNA-1;Parent=Msa0503040;Name=Msa0503040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=241|1|1|1|0.75|0.66|9|453|433
chr3_4 exon 45920702 45921403 45920702 ID=Msa0503040-mRNA-1:exon:9812;Parent=Msa0503040-mRNA-1
chr3_4 exon 45921836 45921951 45921836 ID=Msa0503040-mRNA-1:exon:9811;Parent=Msa0503040-mRNA-1
chr3_4 exon 45922389 45922525 45922389 ID=Msa0503040-mRNA-1:exon:9810;Parent=Msa0503040-mRNA-1
chr3_4 exon 45923026 45923189 45923026 ID=Msa0503040-mRNA-1:exon:9809;Parent=Msa0503040-mRNA-1
chr3_4 exon 45923263 45923343 45923263 ID=Msa0503040-mRNA-1:exon:9808;Parent=Msa0503040-mRNA-1
chr3_4 exon 45923784 45923963 45923784 ID=Msa0503040-mRNA-1:exon:9807;Parent=Msa0503040-mRNA-1
chr3_4 exon 45924158 45924365 45924158 ID=Msa0503040-mRNA-1:exon:9806;Parent=Msa0503040-mRNA-1
chr3_4 exon 45924536 45924727 45924536 ID=Msa0503040-mRNA-1:exon:9805;Parent=Msa0503040-mRNA-1
chr3_4 exon 45925660 45925875 45925660 ID=Msa0503040-mRNA-1:exon:9804;Parent=Msa0503040-mRNA-1
chr3_4 five_prime_UTR 45925660 45925875 45925660 ID=Msa0503040-mRNA-1:five_prime_utr;Parent=Msa0503040-mRNA-1
chr3_4 five_prime_UTR 45924703 45924727 45924703 ID=Msa0503040-mRNA-1:five_prime_utr;Parent=Msa0503040-mRNA-1
chr3_4 CDS 45924536 45924702 45924536 ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1
chr3_4 CDS 45924158 45924365 45924158 ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1
chr3_4 CDS 45923784 45923963 45923784 ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1
chr3_4 CDS 45923263 45923343 45923263 ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1
chr3_4 CDS 45923026 45923189 45923026 ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1
chr3_4 CDS 45922389 45922525 45922389 ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1
chr3_4 CDS 45921836 45921951 45921836 ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1
chr3_4 CDS 45921155 45921403 45921155 ID=Msa0503040-mRNA-1:cds;Parent=Msa0503040-mRNA-1
chr3_4 three_prime_UTR 45920702 45921154 45920702 ID=Msa0503040-mRNA-1:three_prime_utr;Parent=Msa0503040-mRNA-1
Gene Sequence

>Msa0503040

ATGTCAAGTTTGGAGGAGCCACTTGGCCATGACAAGTTGCCAAGCATGAGTACCATGGACAGAGTTCAGAGGTTCTCATCTGGTTGTTGCCGTCCACAAGTAGATAATTTGGGTATGGGAAACTGCTTTATTGAAGGACGAAGTTGCAGCACATCTAATAGCTGCAATGAAGACAATGAAGATTACACAGCCGAAACATACCCTTGGAAAAGGCAAACAAGAGACATGTCCCGAGGTGACTCTTTCAGTCCAAGGACTATGACCACAGGGAGAAACACGATGAAATTTGGAATCGTTGACAAACCACTTTGTACCTCAGATTACCAGTATAGTCAAAAGCGCAATAACAAAGACATGCAAGATATGGCATATAAGTTTATGAAAGGCATGCCTGAGTTTGTTAAGATAGTTGAAGTTGGACCAAGGGATGGATTGCAAAATGAGAAGAACATTGTACCAACAGATGTAAAGATTGAATTGATTCATAGACTAGCATCTACTGGGTTATCTGTCATTGAGGCTACTAGTTTTGTATCTCCCAAATGGGTCCCACAGTTGGCTGATGCAAAAGATGTGATGCAAGCAGTTCATAACCTGAGAGGCATCAGATTGCCAGTTCTGACTCCTAATTTAAAGGGGTTTGAAGCTGCTGTTGCTGCTGGAGCTAGAGAAGTAGCTGTTTTTGCATCAGCTTCTGAATCTTTCTCAAAATCAAACATTAATTGTAGTATTGAAGAGAGTCTTTCCCGCTATCGAGCTGTCACTCGTGCTGCCAAAGAGCTCTCAATTCCAGTTCGAGGGTATGTATCATGCGTTGTTGGATGCCCAGTTGAAGGACCAGTTCCTCCATCAAAAGTAGCTTATGTAGCTAAAGCACTATATGATATGGGTTGTTTCGAAATCTCACTTGGTGACACAATTGGGGTAGGCACGCCAGGCACCGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTACCAACAGAAAAGCTTGCTGTCCACTTTCATGACACATACGGGCAATCCCTTCCAAATATTCTTGTCTCCCTCCAAATGGGAATAAGTGCTGTGGATTCTTCAGTTGCTGGTCTTGGTGGCTGTCCATATGCTAAGGGGGCATCAGGAAATGTAGCGACGGAAGATGTTGTGTACATGCTGAATGGACTTGGTATCAAAACCAACGTTGATATTGGAAAGCTCATGTCAGCTGGCGACTTCATCGGCAAGCAGTTGGGGCGCCCCTCTGGCTCAAAGACTGCCATTGCCCTTAACCGAGTCACTGCTGATGCTTCCAAGATATGA

Protein sequence

>Msa0503040

MSSLEEPLGHDKLPSMSTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCNEDNEDYTAETYPWKRQTRDMSRGDSFSPRTMTTGRNTMKFGIVDKPLCTSDYQYSQKRNNKDMQDMAYKFMKGMPEFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASTGLSVIEATSFVSPKWVPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAVAAGAREVAVFASASESFSKSNINCSIEESLSRYRAVTRAAKELSIPVRGYVSCVVGCPVEGPVPPSKVAYVAKALYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPTEKLAVHFHDTYGQSLPNILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTNVDIGKLMSAGDFIGKQLGRPSGSKTAIALNRVTADASKI*