Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357050 | XP_003599680.1 | 98.152 | 433 | 8 | 0 | 1 | 433 | 1 | 433 | 0.0 | 879 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357050 | sp|O81027|HMGCL_ARATH | 72.811 | 434 | 116 | 2 | 1 | 433 | 36 | 468 | 0.0 | 652 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357050 | G7IZR1 | 98.152 | 433 | 8 | 0 | 1 | 433 | 1 | 433 | 0.0 | 879 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0350070 | Msa0357050 | 0.843495 | 1.353055e-58 | -8.615850e-47 |
Msa0357050 | Msa0396640 | 0.832805 | 7.667053e-56 | -8.615850e-47 |
Msa0357050 | Msa0403290 | 0.872281 | 3.587613e-67 | -8.615850e-47 |
Msa0357050 | Msa0444170 | 0.841876 | 3.640997e-58 | -8.615850e-47 |
Msa0357050 | Msa0449880 | 0.937321 | 4.191820e-98 | -8.615850e-47 |
Msa0357050 | Msa0491730 | 0.843941 | 1.028073e-58 | -8.615850e-47 |
Msa0357050 | Msa0503040 | 0.908877 | 1.056790e-81 | -8.615850e-47 |
Msa0357050 | Msa0575960 | 0.807199 | 5.681215e-50 | -8.615850e-47 |
Msa0357050 | Msa1085570 | 0.824136 | 9.506108e-54 | -8.615850e-47 |
Msa0357050 | Msa1367260 | 0.817176 | 3.777131e-52 | -8.615850e-47 |
Msa0357050 | Msa1434710 | 0.859829 | 3.155260e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357050 | MtrunA17_Chr3g0093871 | 98.152 | 433 | 8 | 0 | 1 | 433 | 1 | 433 | 0.0 | 879 |
Msa0357050 | MtrunA17_Chr7g0255931 | 72.256 | 328 | 90 | 1 | 107 | 433 | 75 | 402 | 1.32e-172 | 489 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357050 | AT2G26800.1 | 72.811 | 434 | 116 | 2 | 1 | 433 | 1 | 433 | 0.0 | 652 |
Msa0357050 | AT2G26800.2 | 72.811 | 434 | 116 | 2 | 1 | 433 | 36 | 468 | 0.0 | 652 |
Msa0357050 | AT2G26800.4 | 72.811 | 434 | 116 | 2 | 1 | 433 | 36 | 468 | 0.0 | 652 |
Msa0357050 | AT2G26800.5 | 72.296 | 379 | 104 | 1 | 56 | 433 | 10 | 388 | 0.0 | 567 |
Msa0357050 | AT2G26800.3 | 68.354 | 316 | 99 | 1 | 1 | 316 | 36 | 350 | 8.59e-157 | 447 |
Find 133 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATAGTTGCACCTTTAAATT+AGG | 0.211209 | 3_1:-37542083 | None:intergenic |
AGTTCTGACTCCTAATTTAA+AGG | 0.233362 | 3_1:+37542073 | Msa0357050:CDS |
CACCGTAGTTCCAATGCTTT+TGG | 0.246522 | 3_1:+37543406 | Msa0357050:CDS |
TGGAGGGAGACAAGAATATT+TGG | 0.260470 | 3_1:-37543497 | None:intergenic |
AGCTAAAGCACTATATGATA+TGG | 0.269941 | 3_1:+37542897 | Msa0357050:CDS |
AAGCAGTTGGGGCGCCCCTC+TGG | 0.273848 | 3_1:+37544124 | Msa0357050:CDS |
TATACCTGTGGGACCCATTT+AGG | 0.281236 | 3_1:-37541547 | None:intergenic |
CATGCAAGATATGGCATATA+AGG | 0.283069 | 3_1:+37541165 | Msa0357050:CDS |
ATCAAAACCAACGTTGATAT+TGG | 0.285460 | 3_1:+37544070 | Msa0357050:CDS |
TTTACAGAATACCTTCAAAA+TGG | 0.293301 | 3_1:-37544547 | None:intergenic |
CCACTTCACCATGTCAAGTT+TGG | 0.300052 | 3_1:+37540634 | Msa0357050:exon |
TTTGAAGCTGCCGTTGCTGC+TGG | 0.311234 | 3_1:+37542171 | Msa0357050:CDS |
CCGTCCACAAGTAGATAATT+TGG | 0.313604 | 3_1:+37540733 | Msa0357050:CDS |
GACTTCATCGGCAAGCAGTT+GGG | 0.324564 | 3_1:+37544112 | Msa0357050:CDS |
GGAGGAACTGGTCCTTCAAC+TGG | 0.330205 | 3_1:-37542856 | None:intergenic |
AACTGGAATTGAGAGCTCTT+TGG | 0.334848 | 3_1:-37542304 | None:intergenic |
CTCCCTGTGGTCATAGTCCT+TGG | 0.337045 | 3_1:-37541061 | None:intergenic |
GATTCTTCAGTTGCTGGTCT+TGG | 0.351386 | 3_1:+37543971 | Msa0357050:CDS |
GCTGTGGATTCTTCAGTTGC+TGG | 0.359338 | 3_1:+37543965 | Msa0357050:CDS |
ATCTCACTTGGTGACACAAT+TGG | 0.361351 | 3_1:+37542931 | Msa0357050:CDS |
TTTACGAAACCCTAGAAATT+GGG | 0.363277 | 3_1:-37539616 | None:intergenic |
GAGAAGCTTGCATTTGCTAT+TGG | 0.363951 | 3_1:-37544381 | None:intergenic |
TCTCACTTGGTGACACAATT+GGG | 0.372918 | 3_1:+37542932 | Msa0357050:CDS |
GGGAGAAACACGATGAAATC+TGG | 0.387304 | 3_1:+37541079 | Msa0357050:CDS |
TAACAAAGACATGCAAGATA+TGG | 0.395825 | 3_1:+37541156 | Msa0357050:CDS |
CGTCCACAAGTAGATAATTT+GGG | 0.396400 | 3_1:+37540734 | Msa0357050:CDS |
CATCAGCAGTGACTCGGTTA+AGG | 0.398712 | 3_1:-37544165 | None:intergenic |
CTGGCAATCTGATGCCTCTC+AGG | 0.410598 | 3_1:-37542052 | None:intergenic |
ATTCATAGACTAGCATCTAC+TGG | 0.414544 | 3_1:+37541490 | Msa0357050:CDS |
AATTCAATCTTTACATCTGT+TGG | 0.426921 | 3_1:-37541466 | None:intergenic |
TGAAGAAAACGTTGAGGGAT+AGG | 0.427797 | 3_1:-37539642 | None:intergenic |
CGACTTCATCGGCAAGCAGT+TGG | 0.429165 | 3_1:+37544111 | Msa0357050:CDS |
AAATAAATGAATAAGTTAGT+TGG | 0.431657 | 3_1:-37539501 | None:intergenic |
ATATAGATGTTATCATATCT+TGG | 0.438779 | 3_1:-37544191 | None:intergenic |
TCTTCAGTTGCTGGTCTTGG+TGG | 0.441483 | 3_1:+37543974 | Msa0357050:CDS |
ACAAGTAGATAATTTGGGTA+TGG | 0.441687 | 3_1:+37540739 | Msa0357050:CDS |
TCCACTCACGTTGATGAGTT+AGG | 0.442451 | 3_1:+37544336 | Msa0357050:three_prime_UTR |
GGTGGCTGTCCATATGCTAA+GGG | 0.446426 | 3_1:+37543992 | Msa0357050:CDS |
TGGTGGCTGTCCATATGCTA+AGG | 0.451026 | 3_1:+37543991 | Msa0357050:CDS |
TTAGTTGGTTGGTGAGGGGA+TGG | 0.465921 | 3_1:-37539486 | None:intergenic |
ATCAGCAGTGACTCGGTTAA+GGG | 0.471542 | 3_1:-37544164 | None:intergenic |
TTTGAAGGTATTCTGTAAAG+TGG | 0.472562 | 3_1:+37544551 | Msa0357050:three_prime_UTR |
ATAAGTTAGTTGGTTGGTGA+GGG | 0.475102 | 3_1:-37539491 | None:intergenic |
ATGGGAAACTGCTTTATTGA+AGG | 0.479991 | 3_1:+37540758 | Msa0357050:CDS |
GCCATTACAGCCAAAAGCAT+TGG | 0.482879 | 3_1:-37543416 | None:intergenic |
ACAATTGGGGTAGGCACGCC+AGG | 0.486021 | 3_1:+37542946 | Msa0357050:CDS |
AAGTTAGCTGGACACGACTA+AGG | 0.486476 | 3_1:-37544642 | None:intergenic |
TTTGTTAAGATAGTTGAAGT+TGG | 0.487269 | 3_1:+37541406 | Msa0357050:CDS |
TTTAAATTAGGAGTCAGAAC+TGG | 0.489900 | 3_1:-37542071 | None:intergenic |
GCTAAAGCACTATATGATAT+GGG | 0.494567 | 3_1:+37542898 | Msa0357050:CDS |
ATGATGTATAGTTAGCTATA+CGG | 0.495826 | 3_1:+37544457 | Msa0357050:three_prime_UTR |
GAAGAAAACGTTGAGGGATA+GGG | 0.496510 | 3_1:-37539641 | None:intergenic |
GAGCTCTCAATTCCAGTTCG+AGG | 0.500214 | 3_1:+37542309 | Msa0357050:CDS |
TCATGCTTGGCAGCTTGTCA+TGG | 0.500596 | 3_1:-37540670 | None:intergenic |
CAAGTAGATAATTTGGGTAT+GGG | 0.504928 | 3_1:+37540740 | Msa0357050:CDS |
AGAGTTCAGAGGTTCTCATC+TGG | 0.505085 | 3_1:+37540704 | Msa0357050:CDS |
CAGAAACATACCCTTGGAAA+AGG | 0.505637 | 3_1:+37541002 | Msa0357050:CDS |
AATAAGTTAGTTGGTTGGTG+AGG | 0.508433 | 3_1:-37539492 | None:intergenic |
CTGTCCATGGTACTCATGCT+TGG | 0.511059 | 3_1:-37540683 | None:intergenic |
ACTTCATCGGCAAGCAGTTG+GGG | 0.512566 | 3_1:+37544113 | Msa0357050:CDS |
ATCCAGGTGATTCAACCAAT+GGG | 0.512862 | 3_1:+37544246 | Msa0357050:three_prime_UTR |
ATTGGAAAGCTCATGTCAGC+TGG | 0.513314 | 3_1:+37544088 | Msa0357050:CDS |
ATCCCATTGGTTGAATCACC+TGG | 0.521698 | 3_1:-37544248 | None:intergenic |
CACAAGTGACAGCTCGATAG+CGG | 0.523310 | 3_1:-37542278 | None:intergenic |
TATCCAGGTGATTCAACCAA+TGG | 0.525894 | 3_1:+37544245 | Msa0357050:three_prime_UTR |
TCAACTATCTTAACAAACTC+AGG | 0.528412 | 3_1:-37541400 | None:intergenic |
ATCTCCTAAATGGGTCCCAC+AGG | 0.529084 | 3_1:+37541543 | Msa0357050:CDS |
TTCTCTAGCTCCAGCAGCAA+CGG | 0.529157 | 3_1:-37542181 | None:intergenic |
CTTCACCATGTCAAGTTTGG+AGG | 0.529375 | 3_1:+37540637 | Msa0357050:exon |
AGCCAAAAGCATTGGAACTA+CGG | 0.530502 | 3_1:-37543408 | None:intergenic |
GGCAGCTTGTCATGGCCAAG+TGG | 0.534171 | 3_1:-37540662 | None:intergenic |
GTCCACTTTCATGACACATA+CGG | 0.536770 | 3_1:+37543464 | Msa0357050:CDS |
TCCACTTTCATGACACATAC+GGG | 0.541191 | 3_1:+37543465 | Msa0357050:CDS |
AGAATTGAAGAAAACGTTGA+GGG | 0.546967 | 3_1:-37539647 | None:intergenic |
GATGTTGTGTACATGCTGAA+TGG | 0.548740 | 3_1:+37544040 | Msa0357050:CDS |
GTTGTTGGATGCCCAGTTGA+AGG | 0.549854 | 3_1:+37542844 | Msa0357050:CDS |
AAATGAATAAGTTAGTTGGT+TGG | 0.550498 | 3_1:-37539497 | None:intergenic |
TTACGAAACCCTAGAAATTG+GGG | 0.550632 | 3_1:-37539615 | None:intergenic |
GTTGAAGTTGGACCAAGGGA+TGG | 0.550966 | 3_1:+37541418 | Msa0357050:CDS |
ACAAGTGACAGCTCGATAGC+GGG | 0.551127 | 3_1:-37542277 | None:intergenic |
TATTTGTTAACTTACTTGGA+GGG | 0.551242 | 3_1:-37543513 | None:intergenic |
ATACCCAAATTATCTACTTG+TGG | 0.551302 | 3_1:-37540737 | None:intergenic |
GTGTACATGCTGAATGGACT+TGG | 0.556574 | 3_1:+37544046 | Msa0357050:CDS |
ATGTCAGCTGGCGACTTCAT+CGG | 0.556641 | 3_1:+37544100 | Msa0357050:CDS |
GCCCGTATGTGTCATGAAAG+TGG | 0.558059 | 3_1:-37543466 | None:intergenic |
TTCATAGACTAGCATCTACT+GGG | 0.564553 | 3_1:+37541491 | Msa0357050:CDS |
AGTGACTCGGTTAAGGGCAA+TGG | 0.564612 | 3_1:-37544158 | None:intergenic |
TACTGGGTTATCTGTCATTG+AGG | 0.564876 | 3_1:+37541507 | Msa0357050:CDS |
TCAAGTTTGGAGGAGCCACT+TGG | 0.565206 | 3_1:+37540647 | Msa0357050:CDS |
GGAGACAAGAATATTTGGAA+GGG | 0.565627 | 3_1:-37543492 | None:intergenic |
GGGAGACAAGAATATTTGGA+AGG | 0.577919 | 3_1:-37543493 | None:intergenic |
ATGGCAGTCTTTGAGCCAGA+GGG | 0.579520 | 3_1:-37544139 | None:intergenic |
GGTTGTTTCGAAATCTCACT+TGG | 0.579694 | 3_1:+37542919 | Msa0357050:CDS |
GATAGTTGAAGTTGGACCAA+GGG | 0.581744 | 3_1:+37541414 | Msa0357050:CDS |
TGGACTGAAAGAGTCACCTC+GGG | 0.587158 | 3_1:-37541041 | None:intergenic |
CATATAGAATGATATCCCAT+TGG | 0.589144 | 3_1:-37544261 | None:intergenic |
GAGCTTTCCAATATCAACGT+TGG | 0.590179 | 3_1:-37544077 | None:intergenic |
AGCTCTCAATTCCAGTTCGA+GGG | 0.594177 | 3_1:+37542310 | Msa0357050:CDS |
TGGGCAATGCAGTTTATGAA+AGG | 0.595135 | 3_1:+37541373 | Msa0357050:intron |
AAGAATTGAAGAAAACGTTG+AGG | 0.595942 | 3_1:-37539648 | None:intergenic |
GAGGAACTGGTCCTTCAACT+GGG | 0.597731 | 3_1:-37542855 | None:intergenic |
GTGGCTGTCCATATGCTAAG+GGG | 0.598484 | 3_1:+37543993 | Msa0357050:CDS |
ACACAGCAGAAACATACCCT+TGG | 0.600138 | 3_1:+37540996 | Msa0357050:CDS |
TGGAAGCATCAGCAGTGACT+CGG | 0.600270 | 3_1:-37544171 | None:intergenic |
CCAAATTATCTACTTGTGGA+CGG | 0.600561 | 3_1:-37540733 | None:intergenic |
CCAAACTTGACATGGTGAAG+TGG | 0.606059 | 3_1:-37540634 | None:intergenic |
TGGCTCCTCCAAACTTGACA+TGG | 0.606063 | 3_1:-37540642 | None:intergenic |
TTTCATCGTGTTTCTCCCTG+TGG | 0.606846 | 3_1:-37541074 | None:intergenic |
AATGGCAGTCTTTGAGCCAG+AGG | 0.609686 | 3_1:-37544140 | None:intergenic |
TGGCTGTCCATATGCTAAGG+GGG | 0.610224 | 3_1:+37543994 | Msa0357050:CDS |
TAAGTTAGTTGGTTGGTGAG+GGG | 0.612642 | 3_1:-37539490 | None:intergenic |
ACAGAATACCTTCAAAATGG+AGG | 0.613881 | 3_1:-37544544 | None:intergenic |
AGTCCAAGGACTATGACCAC+AGG | 0.615138 | 3_1:+37541058 | Msa0357050:CDS |
AGGTATGTATCATGCGTTGT+TGG | 0.615911 | 3_1:+37542829 | Msa0357050:intron |
TCCTAACTCATCAACGTGAG+TGG | 0.618319 | 3_1:-37544337 | None:intergenic |
CTTGGTGACACAATTGGGGT+AGG | 0.625438 | 3_1:+37542937 | Msa0357050:CDS |
GAGGTGACTCTTTCAGTCCA+AGG | 0.626999 | 3_1:+37541044 | Msa0357050:CDS |
GGCATCAGGAAATGTAGCGA+CGG | 0.627133 | 3_1:+37544015 | Msa0357050:CDS |
ATAGATGGGAATAAGTGCTG+TGG | 0.633320 | 3_1:+37543949 | Msa0357050:intron |
AGATAGTTGAAGTTGGACCA+AGG | 0.636448 | 3_1:+37541413 | Msa0357050:CDS |
GAACCTCTGAACTCTGTCCA+TGG | 0.637112 | 3_1:-37540696 | None:intergenic |
ATACACAACTTAGTGCATGA+TGG | 0.641557 | 3_1:-37544436 | None:intergenic |
TTGGACTGAAAGAGTCACCT+CGG | 0.641749 | 3_1:-37541042 | None:intergenic |
CTCACTTGGTGACACAATTG+GGG | 0.642342 | 3_1:+37542933 | Msa0357050:CDS |
TTGACTATACTGGTAATCTG+AGG | 0.644486 | 3_1:-37541125 | None:intergenic |
TACGAAACCCTAGAAATTGG+GGG | 0.648510 | 3_1:-37539614 | None:intergenic |
TGGCAGTCTTTGAGCCAGAG+GGG | 0.660951 | 3_1:-37544138 | None:intergenic |
GCTGCCAAGCATGAGTACCA+TGG | 0.664679 | 3_1:+37540679 | Msa0357050:CDS |
GTCCAAGGACTATGACCACA+GGG | 0.671076 | 3_1:+37541059 | Msa0357050:CDS |
TGGTAATCTGAGGTACAAAG+TGG | 0.671809 | 3_1:-37541115 | None:intergenic |
CAAGCAGTTCATAACCTGAG+AGG | 0.688642 | 3_1:+37542038 | Msa0357050:CDS |
GTACCATGGACAGAGTTCAG+AGG | 0.731970 | 3_1:+37540693 | Msa0357050:CDS |
CAAACAAGAGACATGTCCCG+AGG | 0.735346 | 3_1:+37541025 | Msa0357050:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTAATATATTTTTTAAT+TGG | - | chr3_1:37543055-37543074 | None:intergenic | 0.0% |
!! | AAAACTATAACATTATATAT+TGG | - | chr3_1:37539757-37539776 | None:intergenic | 10.0% |
!! | TCTATTAAATTATAATTCTT+TGG | + | chr3_1:37541232-37541251 | Msa0357050:intron | 10.0% |
!! | AAGTTAAATAAATATAACAA+AGG | - | chr3_1:37541582-37541601 | None:intergenic | 10.0% |
!!! | TATCTATATTTTACATTTAT+AGG | + | chr3_1:37542146-37542165 | Msa0357050:intron | 10.0% |
!!! | ATCTATATTTTACATTTATA+GGG | + | chr3_1:37542147-37542166 | Msa0357050:intron | 10.0% |
!!! | TTTCATTTATTTTTGTTTAT+TGG | + | chr3_1:37543545-37543564 | Msa0357050:intron | 10.0% |
!! | AAATAAATGAATAAGTTAGT+TGG | - | chr3_1:37539504-37539523 | None:intergenic | 15.0% |
!! | AAAAATTGTAATTCATTCTT+TGG | - | chr3_1:37539905-37539924 | None:intergenic | 15.0% |
!!! | AGATACTTAAATTTTTTAAC+TGG | + | chr3_1:37541353-37541372 | Msa0357050:intron | 15.0% |
!!! | GATACTTAAATTTTTTAACT+GGG | + | chr3_1:37541354-37541373 | Msa0357050:intron | 15.0% |
!!! | TCTATATTTTACATTTATAG+GGG | + | chr3_1:37542148-37542167 | Msa0357050:intron | 15.0% |
!!! | TAAATTTTTATCTTTTTGCT+AGG | + | chr3_1:37544581-37544600 | Msa0357050:three_prime_UTR | 15.0% |
!!! | GAATGAATTACAATTTTTGA+AGG | + | chr3_1:37539907-37539926 | Msa0357050:intron | 20.0% |
!!! | ACTAGTTTTTGCTTATATTT+GGG | - | chr3_1:37540012-37540031 | None:intergenic | 20.0% |
!! | ATATATAATTGGCAGATAAT+AGG | - | chr3_1:37540927-37540946 | None:intergenic | 20.0% |
!! | GGTTATGCTATATATATAAT+TGG | - | chr3_1:37540938-37540957 | None:intergenic | 20.0% |
!!! | ACCATTACCTTTTAATTTAT+GGG | - | chr3_1:37541683-37541702 | None:intergenic | 20.0% |
!!! | TACCATTACCTTTTAATTTA+TGG | - | chr3_1:37541684-37541703 | None:intergenic | 20.0% |
!!! | CATTTTGGAAGAAAATATAA+TGG | - | chr3_1:37541735-37541754 | None:intergenic | 20.0% |
!! | TTATTTGTGATCAACAAAAA+AGG | + | chr3_1:37541769-37541788 | Msa0357050:intron | 20.0% |
!!! | TGTAATCGTATCTTTTATAA+TGG | - | chr3_1:37541893-37541912 | None:intergenic | 20.0% |
!! | TCAAATGGGAAAAAAAAAAT+TGG | - | chr3_1:37542436-37542455 | None:intergenic | 20.0% |
!! | TCCTATAGAAAATATCAAAT+GGG | - | chr3_1:37542450-37542469 | None:intergenic | 20.0% |
!! | ATCCTATAGAAAATATCAAA+TGG | - | chr3_1:37542451-37542470 | None:intergenic | 20.0% |
!!! | TGTGGATATTGTAAATTTTA+CGG | + | chr3_1:37542748-37542767 | Msa0357050:intron | 20.0% |
!!! | TTTTATATTAAAGTCGAACT+TGG | + | chr3_1:37542999-37543018 | Msa0357050:intron | 20.0% |
!! | CAATTACTTGTATAGAAAAA+TGG | - | chr3_1:37543190-37543209 | None:intergenic | 20.0% |
!!! | TTATTATTTTAACTGTGATC+AGG | + | chr3_1:37543383-37543402 | Msa0357050:intron | 20.0% |
!!! | TTGATAGTTCATTCATTAAT+TGG | - | chr3_1:37543628-37543647 | None:intergenic | 20.0% |
!! | TATCAAACGACTATAATTAA+TGG | + | chr3_1:37543642-37543661 | Msa0357050:intron | 20.0% |
!!! | TGATTTGTTTAATCTTAATC+AGG | - | chr3_1:37543764-37543783 | None:intergenic | 20.0% |
!! | TTTGTTTGCATATAAATAGA+TGG | + | chr3_1:37543934-37543953 | Msa0357050:intron | 20.0% |
!! | TTGTTTGCATATAAATAGAT+GGG | + | chr3_1:37543935-37543954 | Msa0357050:intron | 20.0% |
!! | ATATAGATGTTATCATATCT+TGG | - | chr3_1:37544194-37544213 | None:intergenic | 20.0% |
!! | TAGCATAAAAATATATATCC+AGG | + | chr3_1:37544230-37544249 | Msa0357050:three_prime_UTR | 20.0% |
!! | AAAAACACTACCAAAAAAAA+AGG | - | chr3_1:37544611-37544630 | None:intergenic | 20.0% |
! | AAATGAATAAGTTAGTTGGT+TGG | - | chr3_1:37539500-37539519 | None:intergenic | 25.0% |
! | ATAAGAACGCGTAAAAATAA+AGG | - | chr3_1:37539554-37539573 | None:intergenic | 25.0% |
!! | GTCTAATTTTCATTCGTTTA+AGG | + | chr3_1:37539672-37539691 | Msa0357050:five_prime_UTR | 25.0% |
! | CTTCAAATTACAGCAAAATA+AGG | - | chr3_1:37539718-37539737 | None:intergenic | 25.0% |
!!! | CTTATTTTGCTGTAATTTGA+AGG | + | chr3_1:37539716-37539735 | Msa0357050:intron | 25.0% |
! | TAAAAACTACATTGTACTGT+TGG | - | chr3_1:37539955-37539974 | None:intergenic | 25.0% |
!! | ACAGTACAATGTAGTTTTTA+TGG | + | chr3_1:37539955-37539974 | Msa0357050:intron | 25.0% |
!!! | GACTAGTTTTTGCTTATATT+TGG | - | chr3_1:37540013-37540032 | None:intergenic | 25.0% |
! | GTCAAAAAAGTTTATGCATT+TGG | + | chr3_1:37540030-37540049 | Msa0357050:intron | 25.0% |
! | TAGATTTCACCATATAGAAT+AGG | + | chr3_1:37540485-37540504 | Msa0357050:intron | 25.0% |
! | TAATAAGTGCCTATTCTATA+TGG | - | chr3_1:37540497-37540516 | None:intergenic | 25.0% |
! | AAGTTTAAATTCATTGCAGT+TGG | + | chr3_1:37541294-37541313 | Msa0357050:intron | 25.0% |
!! | GTGATTTTGTCATATTTCTT+TGG | + | chr3_1:37541316-37541335 | Msa0357050:intron | 25.0% |
! | TTTGTTAAGATAGTTGAAGT+TGG | + | chr3_1:37541406-37541425 | Msa0357050:CDS | 25.0% |
! | AATTCAATCTTTACATCTGT+TGG | - | chr3_1:37541469-37541488 | None:intergenic | 25.0% |
!!! | TAGTTTTGTATCTCCTAAAT+GGG | + | chr3_1:37541534-37541553 | Msa0357050:CDS | 25.0% |
! | GATATTATGAATCATTGTTG+TGG | + | chr3_1:37541614-37541633 | Msa0357050:intron | 25.0% |
! | TCTCAATCCCATAAATTAAA+AGG | + | chr3_1:37541673-37541692 | Msa0357050:intron | 25.0% |
! | TCCCATAAATTAAAAGGTAA+TGG | + | chr3_1:37541679-37541698 | Msa0357050:intron | 25.0% |
! | TTCAGTTATAGAACAGAAAA+TGG | - | chr3_1:37541712-37541731 | None:intergenic | 25.0% |
! | TTGATCACAAATAAAAACTG+GGG | - | chr3_1:37541763-37541782 | None:intergenic | 25.0% |
! | GTTGATCACAAATAAAAACT+GGG | - | chr3_1:37541764-37541783 | None:intergenic | 25.0% |
! | TGTTGATCACAAATAAAAAC+TGG | - | chr3_1:37541765-37541784 | None:intergenic | 25.0% |
!! | TGTTTGGATTGAATGATTTT+GGG | - | chr3_1:37541832-37541851 | None:intergenic | 25.0% |
! | ATTAAAGTGGAGATATTTGA+TGG | - | chr3_1:37542368-37542387 | None:intergenic | 25.0% |
! | AACTTGCAAGTATATTAAAG+TGG | - | chr3_1:37542381-37542400 | None:intergenic | 25.0% |
!! | TCCCATTTGATATTTTCTAT+AGG | + | chr3_1:37542446-37542465 | Msa0357050:intron | 25.0% |
!!! | ATTGTTGTTTTGAGATGATT+TGG | + | chr3_1:37542637-37542656 | Msa0357050:intron | 25.0% |
! | GAGTTTCAAAAATACAAAGA+AGG | - | chr3_1:37542675-37542694 | None:intergenic | 25.0% |
!!! | TGTATTTTTGAAACTCAATC+AGG | + | chr3_1:37542679-37542698 | Msa0357050:intron | 25.0% |
! | ATTTACAATATCCACACAAA+GGG | - | chr3_1:37542744-37542763 | None:intergenic | 25.0% |
! | AATTTACAATATCCACACAA+AGG | - | chr3_1:37542745-37542764 | None:intergenic | 25.0% |
!! | AAGTCTTTGAAAATACGAAA+TGG | - | chr3_1:37543145-37543164 | None:intergenic | 25.0% |
! | TAATTGAAAGCAGAAATCAA+AGG | + | chr3_1:37543204-37543223 | Msa0357050:intron | 25.0% |
! | AATTGAAAGCAGAAATCAAA+GGG | + | chr3_1:37543205-37543224 | Msa0357050:intron | 25.0% |
! | TCAAACATTTAATTGAGACT+AGG | + | chr3_1:37543280-37543299 | Msa0357050:intron | 25.0% |
!! | TCAGAAAGAGTATGTATATT+CGG | - | chr3_1:37543359-37543378 | None:intergenic | 25.0% |
!! | TATTTGTTAACTTACTTGGA+GGG | - | chr3_1:37543516-37543535 | None:intergenic | 25.0% |
!! | AAGCTATTTGTTAACTTACT+TGG | - | chr3_1:37543520-37543539 | None:intergenic | 25.0% |
! | ACACATTACATATATAGAAG+AGG | - | chr3_1:37543595-37543614 | None:intergenic | 25.0% |
!! | TAGAATGTTTAACTTTAAGC+TGG | + | chr3_1:37543862-37543881 | Msa0357050:intron | 25.0% |
!! | AGAATGTTTAACTTTAAGCT+GGG | + | chr3_1:37543863-37543882 | Msa0357050:intron | 25.0% |
!! | TTTTGTTCTTCTTCTATAAC+TGG | - | chr3_1:37544314-37544333 | None:intergenic | 25.0% |
! | ATGATGTATAGTTAGCTATA+CGG | + | chr3_1:37544457-37544476 | Msa0357050:three_prime_UTR | 25.0% |
!! | ATTATTTACCTCCATTTTGA+AGG | + | chr3_1:37544536-37544555 | Msa0357050:three_prime_UTR | 25.0% |
! | TTTACAGAATACCTTCAAAA+TGG | - | chr3_1:37544550-37544569 | None:intergenic | 25.0% |
AAATTGGGGGAATTTGAATA+TGG | - | chr3_1:37539604-37539623 | None:intergenic | 30.0% | |
TTTACGAAACCCTAGAAATT+GGG | - | chr3_1:37539619-37539638 | None:intergenic | 30.0% | |
! | TTTTACGAAACCCTAGAAAT+TGG | - | chr3_1:37539620-37539639 | None:intergenic | 30.0% |
AGAATTGAAGAAAACGTTGA+GGG | - | chr3_1:37539650-37539669 | None:intergenic | 30.0% | |
AAGAATTGAAGAAAACGTTG+AGG | - | chr3_1:37539651-37539670 | None:intergenic | 30.0% | |
!! | ATTTTGCTGTAATTTGAAGG+TGG | + | chr3_1:37539719-37539738 | Msa0357050:intron | 30.0% |
! | CATGTCAATTTGTCACATTT+TGG | + | chr3_1:37539820-37539839 | Msa0357050:intron | 30.0% |
! | CAATTGTGATTAGTTGAATG+AGG | + | chr3_1:37539846-37539865 | Msa0357050:intron | 30.0% |
AATATGCATTATCTGCTTTG+GGG | - | chr3_1:37539981-37540000 | None:intergenic | 30.0% | |
CAATATGCATTATCTGCTTT+GGG | - | chr3_1:37539982-37540001 | None:intergenic | 30.0% | |
TCAATATGCATTATCTGCTT+TGG | - | chr3_1:37539983-37540002 | None:intergenic | 30.0% | |
!! | TTTTTGCTTATATTTGGGAC+CGG | - | chr3_1:37540007-37540026 | None:intergenic | 30.0% |
!! | CTTTTGCTTTTATTTGAGAC+CGG | + | chr3_1:37540087-37540106 | Msa0357050:intron | 30.0% |
TAATTACTCGTCTTCTATGA+TGG | + | chr3_1:37540161-37540180 | Msa0357050:intron | 30.0% | |
! | AGTTTTGCTCTGCATTTAAT+TGG | + | chr3_1:37540375-37540394 | Msa0357050:intron | 30.0% |
! | GTTTTGCTCTGCATTTAATT+GGG | + | chr3_1:37540376-37540395 | Msa0357050:intron | 30.0% |
! | TTTTGCTCTGCATTTAATTG+GGG | + | chr3_1:37540377-37540396 | Msa0357050:intron | 30.0% |
CTAAATACAACTACAAGCAA+AGG | - | chr3_1:37540468-37540487 | None:intergenic | 30.0% | |
! | GTATATATTTTCCTACAACC+TGG | + | chr3_1:37540528-37540547 | Msa0357050:intron | 30.0% |
ATACCCAAATTATCTACTTG+TGG | - | chr3_1:37540740-37540759 | None:intergenic | 30.0% | |
ACAAGTAGATAATTTGGGTA+TGG | + | chr3_1:37540739-37540758 | Msa0357050:CDS | 30.0% | |
CAAGTAGATAATTTGGGTAT+GGG | + | chr3_1:37540740-37540759 | Msa0357050:CDS | 30.0% | |
CAGGAGTTAATGTAAAGTAA+AGG | - | chr3_1:37540890-37540909 | None:intergenic | 30.0% | |
TAACAAAGACATGCAAGATA+TGG | + | chr3_1:37541156-37541175 | Msa0357050:CDS | 30.0% | |
GTCATATTTCTTTGGTTAGT+TGG | + | chr3_1:37541324-37541343 | Msa0357050:intron | 30.0% | |
TCAACTATCTTAACAAACTC+AGG | - | chr3_1:37541403-37541422 | None:intergenic | 30.0% | |
!!! | CTAGTTTTGTATCTCCTAAA+TGG | + | chr3_1:37541533-37541552 | Msa0357050:CDS | 30.0% |
GGCATATAATATATACCTGT+GGG | - | chr3_1:37541561-37541580 | None:intergenic | 30.0% | |
AGGCATATAATATATACCTG+TGG | - | chr3_1:37541562-37541581 | None:intergenic | 30.0% | |
TGATCACAAATAAAAACTGG+GGG | - | chr3_1:37541762-37541781 | None:intergenic | 30.0% | |
! | GTTTGGATTGAATGATTTTG+GGG | - | chr3_1:37541831-37541850 | None:intergenic | 30.0% |
! | CTGTTTGGATTGAATGATTT+TGG | - | chr3_1:37541833-37541852 | None:intergenic | 30.0% |
TTCGATTTATGTCTTTCAGT+TGG | + | chr3_1:37541995-37542014 | Msa0357050:intron | 30.0% | |
TTTAAATTAGGAGTCAGAAC+TGG | - | chr3_1:37542074-37542093 | None:intergenic | 30.0% | |
! | AGTTCTGACTCCTAATTTAA+AGG | + | chr3_1:37542073-37542092 | Msa0357050:CDS | 30.0% |
GATAGTTGCACCTTTAAATT+AGG | - | chr3_1:37542086-37542105 | None:intergenic | 30.0% | |
CGTAGAATTTGATGTCTTAT+GGG | - | chr3_1:37542582-37542601 | None:intergenic | 30.0% | |
TCGTAGAATTTGATGTCTTA+TGG | - | chr3_1:37542583-37542602 | None:intergenic | 30.0% | |
TCTGTTGTACTTATTCCAAT+CGG | + | chr3_1:37542787-37542806 | Msa0357050:intron | 30.0% | |
!! | AATTTAAATACAGCACCGAT+TGG | - | chr3_1:37542805-37542824 | None:intergenic | 30.0% |
!! | ATCGGTGCTGTATTTAAATT+TGG | + | chr3_1:37542805-37542824 | Msa0357050:intron | 30.0% |
GTGCTGTATTTAAATTTGGT+AGG | + | chr3_1:37542809-37542828 | Msa0357050:intron | 30.0% | |
! | AGCTAAAGCACTATATGATA+TGG | + | chr3_1:37542897-37542916 | Msa0357050:CDS | 30.0% |
! | GCTAAAGCACTATATGATAT+GGG | + | chr3_1:37542898-37542917 | Msa0357050:CDS | 30.0% |
CAGAAATCAAAGGGAAAATA+AGG | + | chr3_1:37543214-37543233 | Msa0357050:intron | 30.0% | |
TAATTGAGACTAGGAAGAAT+TGG | + | chr3_1:37543289-37543308 | Msa0357050:intron | 30.0% | |
AATTGAGACTAGGAAGAATT+GGG | + | chr3_1:37543290-37543309 | Msa0357050:intron | 30.0% | |
TATGTATATTCGGGATTAAG+AGG | - | chr3_1:37543349-37543368 | None:intergenic | 30.0% | |
! | CAGAAAGAGTATGTATATTC+GGG | - | chr3_1:37543358-37543377 | None:intergenic | 30.0% |
! | CTATTTGTTAACTTACTTGG+AGG | - | chr3_1:37543517-37543536 | None:intergenic | 30.0% |
AATACCATGTACATCAGATT+TGG | + | chr3_1:37543684-37543703 | Msa0357050:intron | 30.0% | |
AAATCCAAATCTGATGTACA+TGG | - | chr3_1:37543691-37543710 | None:intergenic | 30.0% | |
! | CAGTTATTAATGGACATTCT+TGG | + | chr3_1:37543911-37543930 | Msa0357050:intron | 30.0% |
ATCAAAACCAACGTTGATAT+TGG | + | chr3_1:37544070-37544089 | Msa0357050:CDS | 30.0% | |
CATATAGAATGATATCCCAT+TGG | - | chr3_1:37544264-37544283 | None:intergenic | 30.0% | |
!! | TTTGAAGGTATTCTGTAAAG+TGG | + | chr3_1:37544551-37544570 | Msa0357050:three_prime_UTR | 30.0% |
!!! | TTTTGGTAGTGTTTTTTGCT+AGG | + | chr3_1:37544615-37544634 | Msa0357050:three_prime_UTR | 30.0% |
!! | ATAAGTTAGTTGGTTGGTGA+GGG | - | chr3_1:37539494-37539513 | None:intergenic | 35.0% |
! | AATAAGTTAGTTGGTTGGTG+AGG | - | chr3_1:37539495-37539514 | None:intergenic | 35.0% |
TTCAAATTCCCCCAATTTCT+AGG | + | chr3_1:37539606-37539625 | Msa0357050:five_prime_UTR | 35.0% | |
TCAAATTCCCCCAATTTCTA+GGG | + | chr3_1:37539607-37539626 | Msa0357050:five_prime_UTR | 35.0% | |
TTACGAAACCCTAGAAATTG+GGG | - | chr3_1:37539618-37539637 | None:intergenic | 35.0% | |
GCAGATAATGCATATTGATC+CGG | + | chr3_1:37539985-37540004 | Msa0357050:intron | 35.0% | |
TCGTCTTCTATGATGGTTAA+TGG | + | chr3_1:37540168-37540187 | Msa0357050:intron | 35.0% | |
CTTCTATGATGGTTAATGGA+AGG | + | chr3_1:37540172-37540191 | Msa0357050:intron | 35.0% | |
!! | AAAACCCACATTAGTTTGTC+TGG | + | chr3_1:37540261-37540280 | Msa0357050:intron | 35.0% |
CCAAATTATCTACTTGTGGA+CGG | - | chr3_1:37540736-37540755 | None:intergenic | 35.0% | |
CGTCCACAAGTAGATAATTT+GGG | + | chr3_1:37540734-37540753 | Msa0357050:CDS | 35.0% | |
! | ATGGGAAACTGCTTTATTGA+AGG | + | chr3_1:37540758-37540777 | Msa0357050:CDS | 35.0% |
ATAGGTCAGTAATACATGAC+AGG | - | chr3_1:37540909-37540928 | None:intergenic | 35.0% | |
TTGACTATACTGGTAATCTG+AGG | - | chr3_1:37541128-37541147 | None:intergenic | 35.0% | |
!! | TATTGCGCTTTTGACTATAC+TGG | - | chr3_1:37541138-37541157 | None:intergenic | 35.0% |
CATGCAAGATATGGCATATA+AGG | + | chr3_1:37541165-37541184 | Msa0357050:CDS | 35.0% | |
ATGGCATATAAGGTATGCAA+CGG | + | chr3_1:37541175-37541194 | Msa0357050:intron | 35.0% | |
! | TCATTTTGTAATCCATCCCT+TGG | - | chr3_1:37541433-37541452 | None:intergenic | 35.0% |
ATTCATAGACTAGCATCTAC+TGG | + | chr3_1:37541490-37541509 | Msa0357050:CDS | 35.0% | |
TTCATAGACTAGCATCTACT+GGG | + | chr3_1:37541491-37541510 | Msa0357050:CDS | 35.0% | |
! | AAAACTGGGGGAAATCATTT+TGG | - | chr3_1:37541750-37541769 | None:intergenic | 35.0% |
GAATCTGTTGGGAAGAAAAA+TGG | - | chr3_1:37541803-37541822 | None:intergenic | 35.0% | |
CATCACAGTGTACTTGATTA+AGG | - | chr3_1:37541951-37541970 | None:intergenic | 35.0% | |
AAATCGAATGACATTGAAGC+AGG | - | chr3_1:37541983-37542002 | None:intergenic | 35.0% | |
AAGACATCTGAATGTAAAGC+TGG | - | chr3_1:37542127-37542146 | None:intergenic | 35.0% | |
AAAAATGTATACCCTCGAAC+TGG | - | chr3_1:37542324-37542343 | None:intergenic | 35.0% | |
ATATACTTGCAAGTTGCAAG+TGG | + | chr3_1:37542386-37542405 | Msa0357050:intron | 35.0% | |
TATACTTGCAAGTTGCAAGT+GGG | + | chr3_1:37542387-37542406 | Msa0357050:intron | 35.0% | |
CGAATATAGAGAAGATTGCA+GGG | - | chr3_1:37542486-37542505 | None:intergenic | 35.0% | |
CCTGCAATCTTCTCTATATT+CGG | + | chr3_1:37542484-37542503 | Msa0357050:intron | 35.0% | |
AAGTTCATCTGACATTGAAC+TGG | + | chr3_1:37542531-37542550 | Msa0357050:intron | 35.0% | |
ATGTCTTATGGGATAGCATT+AGG | - | chr3_1:37542571-37542590 | None:intergenic | 35.0% | |
TGTAACTGTTAAGACCTTGA+CGG | - | chr3_1:37542710-37542729 | None:intergenic | 35.0% | |
!!! | ACATAAGCTACTTTTGATGG+AGG | - | chr3_1:37542877-37542896 | None:intergenic | 35.0% |
!!! | GCTACATAAGCTACTTTTGA+TGG | - | chr3_1:37542880-37542899 | None:intergenic | 35.0% |
AAGTTTGTGCTTAATTGGGT+TGG | - | chr3_1:37543079-37543098 | None:intergenic | 35.0% | |
AACCCAATTAAGCACAAACT+TGG | + | chr3_1:37543078-37543097 | Msa0357050:intron | 35.0% | |
ACCCAATTAAGCACAAACTT+GGG | + | chr3_1:37543079-37543098 | Msa0357050:intron | 35.0% | |
ACCCAAGTTTGTGCTTAATT+GGG | - | chr3_1:37543083-37543102 | None:intergenic | 35.0% | |
AACCCAAGTTTGTGCTTAAT+TGG | - | chr3_1:37543084-37543103 | None:intergenic | 35.0% | |
ATTGAGACTAGGAAGAATTG+GGG | + | chr3_1:37543291-37543310 | Msa0357050:intron | 35.0% | |
GGAGACAAGAATATTTGGAA+GGG | - | chr3_1:37543495-37543514 | None:intergenic | 35.0% | |
! | AGATTTGGATTTTCTGCAGT+TGG | + | chr3_1:37543699-37543718 | Msa0357050:intron | 35.0% |
!! | TTTTCTAGTCGTAAGGAATC+TGG | + | chr3_1:37543826-37543845 | Msa0357050:intron | 35.0% |
! | TGGGTCTGCATTTTATGATT+CGG | + | chr3_1:37543882-37543901 | Msa0357050:intron | 35.0% |
TCGGTAGTCTCAGTTATTAA+TGG | + | chr3_1:37543901-37543920 | Msa0357050:intron | 35.0% | |
ATACACAACTTAGTGCATGA+TGG | - | chr3_1:37544439-37544458 | None:intergenic | 35.0% | |
ACAGAATACCTTCAAAATGG+AGG | - | chr3_1:37544547-37544566 | None:intergenic | 35.0% | |
!!! | GCTAGGTTAGCCTTTTTTTT+TGG | + | chr3_1:37544598-37544617 | Msa0357050:three_prime_UTR | 35.0% |
!! | TAAGTTAGTTGGTTGGTGAG+GGG | - | chr3_1:37539493-37539512 | None:intergenic | 40.0% |
TACGAAACCCTAGAAATTGG+GGG | - | chr3_1:37539617-37539636 | None:intergenic | 40.0% | |
GAAGAAAACGTTGAGGGATA+GGG | - | chr3_1:37539644-37539663 | None:intergenic | 40.0% | |
TGAAGAAAACGTTGAGGGAT+AGG | - | chr3_1:37539645-37539664 | None:intergenic | 40.0% | |
AAGCTGAGACATACTTCTTC+CGG | - | chr3_1:37540109-37540128 | None:intergenic | 40.0% | |
!! | AAGTATGTCTCAGCTTGCTA+TGG | + | chr3_1:37540113-37540132 | Msa0357050:intron | 40.0% |
ACCACCAGACAAACTAATGT+GGG | - | chr3_1:37540268-37540287 | None:intergenic | 40.0% | |
!! | ATGGACTAGCCAACTGAAAT+TGG | - | chr3_1:37540351-37540370 | None:intergenic | 40.0% |
! | TTTCAGTTGGCTAGTCCATA+AGG | + | chr3_1:37540352-37540371 | Msa0357050:intron | 40.0% |
ATGCAGAGCAAAACTCCTTA+TGG | - | chr3_1:37540370-37540389 | None:intergenic | 40.0% | |
!!! | GGTCTTTTGACTGGATTAGT+CGG | + | chr3_1:37540441-37540460 | Msa0357050:intron | 40.0% |
ATGATTTCTACCATTTCGCC+AGG | - | chr3_1:37540549-37540568 | None:intergenic | 40.0% | |
CCGTCCACAAGTAGATAATT+TGG | + | chr3_1:37540733-37540752 | Msa0357050:CDS | 40.0% | |
! | CTGCACGGAATATAGTCTTA+AGG | - | chr3_1:37540959-37540978 | None:intergenic | 40.0% |
TCTTCATTGTCTTCACTGCA+CGG | - | chr3_1:37540974-37540993 | None:intergenic | 40.0% | |
CAGAAACATACCCTTGGAAA+AGG | + | chr3_1:37541002-37541021 | Msa0357050:CDS | 40.0% | |
!! | CTCTTGTTTGCCTTTTCCAA+GGG | - | chr3_1:37541015-37541034 | None:intergenic | 40.0% |
!! | TCTCTTGTTTGCCTTTTCCA+AGG | - | chr3_1:37541016-37541035 | None:intergenic | 40.0% |
! | TGGTAATCTGAGGTACAAAG+TGG | - | chr3_1:37541118-37541137 | None:intergenic | 40.0% |
TGGGCAATGCAGTTTATGAA+AGG | + | chr3_1:37541373-37541392 | Msa0357050:intron | 40.0% | |
AGATAGTTGAAGTTGGACCA+AGG | + | chr3_1:37541413-37541432 | Msa0357050:CDS | 40.0% | |
GATAGTTGAAGTTGGACCAA+GGG | + | chr3_1:37541414-37541433 | Msa0357050:CDS | 40.0% | |
TACTGGGTTATCTGTCATTG+AGG | + | chr3_1:37541507-37541526 | Msa0357050:CDS | 40.0% | |
TTGGGGTGAATGAATCTGTT+GGG | - | chr3_1:37541814-37541833 | None:intergenic | 40.0% | |
! | TTTGGGGTGAATGAATCTGT+TGG | - | chr3_1:37541815-37541834 | None:intergenic | 40.0% |
GTAAATGCGTAAGGTCTGTT+TGG | - | chr3_1:37541848-37541867 | None:intergenic | 40.0% | |
AATGTAAAGCTGGCAACGTA+TGG | - | chr3_1:37542117-37542136 | None:intergenic | 40.0% | |
AACTGGAATTGAGAGCTCTT+TGG | - | chr3_1:37542307-37542326 | None:intergenic | 40.0% | |
CCGAATATAGAGAAGATTGC+AGG | - | chr3_1:37542487-37542506 | None:intergenic | 40.0% | |
GCAATCTTCTCTATATTCGG+TGG | + | chr3_1:37542487-37542506 | Msa0357050:intron | 40.0% | |
!!! | GTTTTGAGATGATTTGGCAC+TGG | + | chr3_1:37542643-37542662 | Msa0357050:intron | 40.0% |
AGGTATGTATCATGCGTTGT+TGG | + | chr3_1:37542829-37542848 | Msa0357050:intron | 40.0% | |
! | GGTTGTTTCGAAATCTCACT+TGG | + | chr3_1:37542919-37542938 | Msa0357050:CDS | 40.0% |
! | ATCTCACTTGGTGACACAAT+TGG | + | chr3_1:37542931-37542950 | Msa0357050:CDS | 40.0% |
! | TCTCACTTGGTGACACAATT+GGG | + | chr3_1:37542932-37542951 | Msa0357050:CDS | 40.0% |
AAGCCATCTAACTCATTACC+TGG | - | chr3_1:37542967-37542986 | None:intergenic | 40.0% | |
!! | AGCCAAAAGCATTGGAACTA+CGG | - | chr3_1:37543411-37543430 | None:intergenic | 40.0% |
!! | TCCAATGCTTTTGGCTGTAA+TGG | + | chr3_1:37543415-37543434 | Msa0357050:CDS | 40.0% |
GTCCACTTTCATGACACATA+CGG | + | chr3_1:37543464-37543483 | Msa0357050:CDS | 40.0% | |
TCCACTTTCATGACACATAC+GGG | + | chr3_1:37543465-37543484 | Msa0357050:CDS | 40.0% | |
GGGAGACAAGAATATTTGGA+AGG | - | chr3_1:37543496-37543515 | None:intergenic | 40.0% | |
TGGAGGGAGACAAGAATATT+TGG | - | chr3_1:37543500-37543519 | None:intergenic | 40.0% | |
!! | CTCAGGATTTTCTAGTCGTA+AGG | + | chr3_1:37543819-37543838 | Msa0357050:intron | 40.0% |
! | ATAGATGGGAATAAGTGCTG+TGG | + | chr3_1:37543949-37543968 | Msa0357050:intron | 40.0% |
GATGTTGTGTACATGCTGAA+TGG | + | chr3_1:37544040-37544059 | Msa0357050:CDS | 40.0% | |
GAGCTTTCCAATATCAACGT+TGG | - | chr3_1:37544080-37544099 | None:intergenic | 40.0% | |
TATCCAGGTGATTCAACCAA+TGG | + | chr3_1:37544245-37544264 | Msa0357050:three_prime_UTR | 40.0% | |
ATCCAGGTGATTCAACCAAT+GGG | + | chr3_1:37544246-37544265 | Msa0357050:three_prime_UTR | 40.0% | |
!! | GAGAAGCTTGCATTTGCTAT+TGG | - | chr3_1:37544384-37544403 | None:intergenic | 40.0% |
!! | ATGTCTCAGCTTGCTATGGA+TGG | + | chr3_1:37540117-37540136 | Msa0357050:intron | 45.0% |
!! | TGTCTCAGCTTGCTATGGAT+GGG | + | chr3_1:37540118-37540137 | Msa0357050:intron | 45.0% |
! | TGCTATGGATGGGCAAGTTT+TGG | + | chr3_1:37540128-37540147 | Msa0357050:intron | 45.0% |
!! | ACCCACATTAGTTTGTCTGG+TGG | + | chr3_1:37540264-37540283 | Msa0357050:intron | 45.0% |
CACCACCAGACAAACTAATG+TGG | - | chr3_1:37540269-37540288 | None:intergenic | 45.0% | |
! | CTTGAGAGAAGTACACTCCA+AGG | - | chr3_1:37540303-37540322 | None:intergenic | 45.0% |
CTTGGAGTGTACTTCTCTCA+AGG | + | chr3_1:37540301-37540320 | Msa0357050:intron | 45.0% | |
TGTACTTCTCTCAAGGTCTC+AGG | + | chr3_1:37540308-37540327 | Msa0357050:intron | 45.0% | |
TAGCCAACTGAAATTGGCAC+CGG | - | chr3_1:37540345-37540364 | None:intergenic | 45.0% | |
!! | GATTGGTCTCCTGGATTAGT+CGG | + | chr3_1:37540420-37540439 | Msa0357050:intron | 45.0% |
GTCAAAAGACCGACTAATCC+AGG | - | chr3_1:37540432-37540451 | None:intergenic | 45.0% | |
!!! | GGATTAGTCGGTCTTTTGAC+TGG | + | chr3_1:37540432-37540451 | Msa0357050:intron | 45.0% |
TTTCCTACAACCTGGCGAAA+TGG | + | chr3_1:37540536-37540555 | Msa0357050:intron | 45.0% | |
GTGGATGAGAGAAACAAAGC+TGG | - | chr3_1:37540618-37540637 | None:intergenic | 45.0% | |
CCAAACTTGACATGGTGAAG+TGG | - | chr3_1:37540637-37540656 | None:intergenic | 45.0% | |
CCACTTCACCATGTCAAGTT+TGG | + | chr3_1:37540634-37540653 | Msa0357050:exon | 45.0% | |
CTTCACCATGTCAAGTTTGG+AGG | + | chr3_1:37540637-37540656 | Msa0357050:exon | 45.0% | |
AGAGTTCAGAGGTTCTCATC+TGG | + | chr3_1:37540704-37540723 | Msa0357050:CDS | 45.0% | |
ACACAGCAGAAACATACCCT+TGG | + | chr3_1:37540996-37541015 | Msa0357050:CDS | 45.0% | |
TTGGACTGAAAGAGTCACCT+CGG | - | chr3_1:37541045-37541064 | None:intergenic | 45.0% | |
TTTCATCGTGTTTCTCCCTG+TGG | - | chr3_1:37541077-37541096 | None:intergenic | 45.0% | |
GGGAGAAACACGATGAAATC+TGG | + | chr3_1:37541079-37541098 | Msa0357050:CDS | 45.0% | |
GCAGCAGTACTTTCTGTTCA+AGG | + | chr3_1:37541197-37541216 | Msa0357050:intron | 45.0% | |
TATACCTGTGGGACCCATTT+AGG | - | chr3_1:37541550-37541569 | None:intergenic | 45.0% | |
AACTGCGCAGTAAATGCGTA+AGG | - | chr3_1:37541857-37541876 | None:intergenic | 45.0% | |
CAAGCAGTTCATAACCTGAG+AGG | + | chr3_1:37542038-37542057 | Msa0357050:CDS | 45.0% | |
AGCTCTCAATTCCAGTTCGA+GGG | + | chr3_1:37542310-37542329 | Msa0357050:CDS | 45.0% | |
CATGTGAAAGTCCCTTTGTG+TGG | + | chr3_1:37542730-37542749 | Msa0357050:intron | 45.0% | |
!!! | GCTACTTTTGATGGAGGAAC+TGG | - | chr3_1:37542871-37542890 | None:intergenic | 45.0% |
! | CTCACTTGGTGACACAATTG+GGG | + | chr3_1:37542933-37542952 | Msa0357050:CDS | 45.0% |
ACGCCAGGTAATGAGTTAGA+TGG | + | chr3_1:37542961-37542980 | Msa0357050:intron | 45.0% | |
! | CACCGTAGTTCCAATGCTTT+TGG | + | chr3_1:37543406-37543425 | Msa0357050:CDS | 45.0% |
! | GCCATTACAGCCAAAAGCAT+TGG | - | chr3_1:37543419-37543438 | None:intergenic | 45.0% |
! | TGGACAGCAAGCTTTTCTGT+TGG | - | chr3_1:37543449-37543468 | None:intergenic | 45.0% |
CTGCTAGAGATACATGACTC+TGG | + | chr3_1:37543792-37543811 | Msa0357050:intron | 45.0% | |
TACATGACTCTGGCAAACTC+AGG | + | chr3_1:37543802-37543821 | Msa0357050:intron | 45.0% | |
! | GATTCTTCAGTTGCTGGTCT+TGG | + | chr3_1:37543971-37543990 | Msa0357050:CDS | 45.0% |
! | GTGTACATGCTGAATGGACT+TGG | + | chr3_1:37544046-37544065 | Msa0357050:CDS | 45.0% |
ATTGGAAAGCTCATGTCAGC+TGG | + | chr3_1:37544088-37544107 | Msa0357050:CDS | 45.0% | |
!! | ATCAGCAGTGACTCGGTTAA+GGG | - | chr3_1:37544167-37544186 | None:intergenic | 45.0% |
! | ATCCCATTGGTTGAATCACC+TGG | - | chr3_1:37544251-37544270 | None:intergenic | 45.0% |
! | TCCACTCACGTTGATGAGTT+AGG | + | chr3_1:37544336-37544355 | Msa0357050:three_prime_UTR | 45.0% |
TCCTAACTCATCAACGTGAG+TGG | - | chr3_1:37544340-37544359 | None:intergenic | 45.0% | |
!! | TTAGTTGGTTGGTGAGGGGA+TGG | - | chr3_1:37539489-37539508 | None:intergenic | 50.0% |
AAGTACACTCCAAGGTCCCA+AGG | - | chr3_1:37540295-37540314 | None:intergenic | 50.0% | |
AGCCAACTGAAATTGGCACC+GGG | - | chr3_1:37540344-37540363 | None:intergenic | 50.0% | |
CTACCATTTCGCCAGGTTGT+AGG | - | chr3_1:37540542-37540561 | None:intergenic | 50.0% | |
TGGCTCCTCCAAACTTGACA+TGG | - | chr3_1:37540645-37540664 | None:intergenic | 50.0% | |
TCAAGTTTGGAGGAGCCACT+TGG | + | chr3_1:37540647-37540666 | Msa0357050:CDS | 50.0% | |
TCATGCTTGGCAGCTTGTCA+TGG | - | chr3_1:37540673-37540692 | None:intergenic | 50.0% | |
CTGTCCATGGTACTCATGCT+TGG | - | chr3_1:37540686-37540705 | None:intergenic | 50.0% | |
GTACCATGGACAGAGTTCAG+AGG | + | chr3_1:37540693-37540712 | Msa0357050:CDS | 50.0% | |
GAACCTCTGAACTCTGTCCA+TGG | - | chr3_1:37540699-37540718 | None:intergenic | 50.0% | |
CAAACAAGAGACATGTCCCG+AGG | + | chr3_1:37541025-37541044 | Msa0357050:CDS | 50.0% | |
TGGACTGAAAGAGTCACCTC+GGG | - | chr3_1:37541044-37541063 | None:intergenic | 50.0% | |
GAGGTGACTCTTTCAGTCCA+AGG | + | chr3_1:37541044-37541063 | Msa0357050:CDS | 50.0% | |
AGTCCAAGGACTATGACCAC+AGG | + | chr3_1:37541058-37541077 | Msa0357050:CDS | 50.0% | |
GTCCAAGGACTATGACCACA+GGG | + | chr3_1:37541059-37541078 | Msa0357050:CDS | 50.0% | |
GTTGAAGTTGGACCAAGGGA+TGG | + | chr3_1:37541418-37541437 | Msa0357050:CDS | 50.0% | |
ATCTCCTAAATGGGTCCCAC+AGG | + | chr3_1:37541543-37541562 | Msa0357050:CDS | 50.0% | |
! | TTCTCTAGCTCCAGCAGCAA+CGG | - | chr3_1:37542184-37542203 | None:intergenic | 50.0% |
ACAAGTGACAGCTCGATAGC+GGG | - | chr3_1:37542280-37542299 | None:intergenic | 50.0% | |
CACAAGTGACAGCTCGATAG+CGG | - | chr3_1:37542281-37542300 | None:intergenic | 50.0% | |
GAGCTCTCAATTCCAGTTCG+AGG | + | chr3_1:37542309-37542328 | Msa0357050:CDS | 50.0% | |
TCAATCAGGTCAAGCCGTCA+AGG | + | chr3_1:37542693-37542712 | Msa0357050:intron | 50.0% | |
GTTGTTGGATGCCCAGTTGA+AGG | + | chr3_1:37542844-37542863 | Msa0357050:CDS | 50.0% | |
GAGGAACTGGTCCTTCAACT+GGG | - | chr3_1:37542858-37542877 | None:intergenic | 50.0% | |
! | CTTGGTGACACAATTGGGGT+AGG | + | chr3_1:37542937-37542956 | Msa0357050:CDS | 50.0% |
GCCCGTATGTGTCATGAAAG+TGG | - | chr3_1:37543469-37543488 | None:intergenic | 50.0% | |
GCTGTGGATTCTTCAGTTGC+TGG | + | chr3_1:37543965-37543984 | Msa0357050:CDS | 50.0% | |
!! | TCTTCAGTTGCTGGTCTTGG+TGG | + | chr3_1:37543974-37543993 | Msa0357050:CDS | 50.0% |
TGGTGGCTGTCCATATGCTA+AGG | + | chr3_1:37543991-37544010 | Msa0357050:CDS | 50.0% | |
GGTGGCTGTCCATATGCTAA+GGG | + | chr3_1:37543992-37544011 | Msa0357050:CDS | 50.0% | |
GTGGCTGTCCATATGCTAAG+GGG | + | chr3_1:37543993-37544012 | Msa0357050:CDS | 50.0% | |
TGGCTGTCCATATGCTAAGG+GGG | + | chr3_1:37543994-37544013 | Msa0357050:CDS | 50.0% | |
GGCATCAGGAAATGTAGCGA+CGG | + | chr3_1:37544015-37544034 | Msa0357050:CDS | 50.0% | |
ATGTCAGCTGGCGACTTCAT+CGG | + | chr3_1:37544100-37544119 | Msa0357050:CDS | 50.0% | |
GACTTCATCGGCAAGCAGTT+GGG | + | chr3_1:37544112-37544131 | Msa0357050:CDS | 50.0% | |
ACTTCATCGGCAAGCAGTTG+GGG | + | chr3_1:37544113-37544132 | Msa0357050:CDS | 50.0% | |
ATGGCAGTCTTTGAGCCAGA+GGG | - | chr3_1:37544142-37544161 | None:intergenic | 50.0% | |
AATGGCAGTCTTTGAGCCAG+AGG | - | chr3_1:37544143-37544162 | None:intergenic | 50.0% | |
!! | AGTGACTCGGTTAAGGGCAA+TGG | - | chr3_1:37544161-37544180 | None:intergenic | 50.0% |
!! | CATCAGCAGTGACTCGGTTA+AGG | - | chr3_1:37544168-37544187 | None:intergenic | 50.0% |
!! | TGGAAGCATCAGCAGTGACT+CGG | - | chr3_1:37544174-37544193 | None:intergenic | 50.0% |
! | TTTGTCTGGTGGTGCAGCCT+TGG | + | chr3_1:37540275-37540294 | Msa0357050:intron | 55.0% |
! | TTGTCTGGTGGTGCAGCCTT+GGG | + | chr3_1:37540276-37540295 | Msa0357050:intron | 55.0% |
! | CAACTGAAATTGGCACCGGG+AGG | - | chr3_1:37540341-37540360 | None:intergenic | 55.0% |
! | CTCCCGGTGCCAATTTCAGT+TGG | + | chr3_1:37540339-37540358 | Msa0357050:intron | 55.0% |
! | AATCACACCGTCGACTAGCG+GGG | - | chr3_1:37540404-37540423 | None:intergenic | 55.0% |
! | CAATCACACCGTCGACTAGC+GGG | - | chr3_1:37540405-37540424 | None:intergenic | 55.0% |
! | CCAATCACACCGTCGACTAG+CGG | - | chr3_1:37540406-37540425 | None:intergenic | 55.0% |
GCTGCCAAGCATGAGTACCA+TGG | + | chr3_1:37540679-37540698 | Msa0357050:CDS | 55.0% | |
CTCCCTGTGGTCATAGTCCT+TGG | - | chr3_1:37541064-37541083 | None:intergenic | 55.0% | |
CTGGCAATCTGATGCCTCTC+AGG | - | chr3_1:37542055-37542074 | None:intergenic | 55.0% | |
! | TTTGAAGCTGCCGTTGCTGC+TGG | + | chr3_1:37542171-37542190 | Msa0357050:CDS | 55.0% |
GGAGGAACTGGTCCTTCAAC+TGG | - | chr3_1:37542859-37542878 | None:intergenic | 55.0% | |
TGCATGGCTGCGGCAAATTC+AGG | - | chr3_1:37543730-37543749 | None:intergenic | 55.0% | |
CCTGATGCCCCCTTAGCATA+TGG | - | chr3_1:37544004-37544023 | None:intergenic | 55.0% | |
!! | CCATATGCTAAGGGGGCATC+AGG | + | chr3_1:37544001-37544020 | Msa0357050:CDS | 55.0% |
CGACTTCATCGGCAAGCAGT+TGG | + | chr3_1:37544111-37544130 | Msa0357050:CDS | 55.0% | |
TGGCAGTCTTTGAGCCAGAG+GGG | - | chr3_1:37544141-37544160 | None:intergenic | 55.0% | |
GTCTCAGGTGCGAATCCTCC+CGG | + | chr3_1:37540323-37540342 | Msa0357050:intron | 60.0% | |
! | ATCACACCGTCGACTAGCGG+GGG | - | chr3_1:37540403-37540422 | None:intergenic | 60.0% |
CCGCTAGTCGACGGTGTGAT+TGG | + | chr3_1:37540403-37540422 | Msa0357050:intron | 60.0% | |
!! | CGACGGTGTGATTGGTCTCC+TGG | + | chr3_1:37540411-37540430 | Msa0357050:intron | 60.0% |
GGCAGCTTGTCATGGCCAAG+TGG | - | chr3_1:37540665-37540684 | None:intergenic | 60.0% | |
ACAATTGGGGTAGGCACGCC+AGG | + | chr3_1:37542946-37542965 | Msa0357050:CDS | 60.0% | |
TTGCCGCAGCCATGCATCTC+AGG | + | chr3_1:37543734-37543753 | Msa0357050:intron | 60.0% | |
TGCCGCAGCCATGCATCTCA+GGG | + | chr3_1:37543735-37543754 | Msa0357050:intron | 60.0% | |
AGCCCTGAGATGCATGGCTG+CGG | - | chr3_1:37543740-37543759 | None:intergenic | 60.0% | |
TCAGGCAGCCCTGAGATGCA+TGG | - | chr3_1:37543746-37543765 | None:intergenic | 60.0% | |
GTGGTGCAGCCTTGGGACCT+TGG | + | chr3_1:37540283-37540302 | Msa0357050:intron | 65.0% | |
TTGGGGCCCCCGCTAGTCGA+CGG | + | chr3_1:37540394-37540413 | Msa0357050:intron | 70.0% | |
! | AAGCAGTTGGGGCGCCCCTC+TGG | + | chr3_1:37544124-37544143 | Msa0357050:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 37539486 | 37544654 | 37539486 | ID=Msa0357050;Name=Msa0357050 |
chr3_1 | mRNA | 37539486 | 37544654 | 37539486 | ID=Msa0357050-mRNA-1;Parent=Msa0357050;Name=Msa0357050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=233|1|1|1|0.87|0.77|9|453|433 |
chr3_1 | exon | 37539486 | 37539693 | 37539486 | ID=Msa0357050-mRNA-1:exon:6854;Parent=Msa0357050-mRNA-1 |
chr3_1 | exon | 37540619 | 37540810 | 37540619 | ID=Msa0357050-mRNA-1:exon:6855;Parent=Msa0357050-mRNA-1 |
chr3_1 | exon | 37540979 | 37541186 | 37540979 | ID=Msa0357050-mRNA-1:exon:6856;Parent=Msa0357050-mRNA-1 |
chr3_1 | exon | 37541385 | 37541564 | 37541385 | ID=Msa0357050-mRNA-1:exon:6857;Parent=Msa0357050-mRNA-1 |
chr3_1 | exon | 37542014 | 37542094 | 37542014 | ID=Msa0357050-mRNA-1:exon:6858;Parent=Msa0357050-mRNA-1 |
chr3_1 | exon | 37542168 | 37542331 | 37542168 | ID=Msa0357050-mRNA-1:exon:6859;Parent=Msa0357050-mRNA-1 |
chr3_1 | exon | 37542831 | 37542967 | 37542831 | ID=Msa0357050-mRNA-1:exon:6860;Parent=Msa0357050-mRNA-1 |
chr3_1 | exon | 37543405 | 37543520 | 37543405 | ID=Msa0357050-mRNA-1:exon:6861;Parent=Msa0357050-mRNA-1 |
chr3_1 | exon | 37543953 | 37544654 | 37543953 | ID=Msa0357050-mRNA-1:exon:6862;Parent=Msa0357050-mRNA-1 |
chr3_1 | five_prime_UTR | 37539486 | 37539693 | 37539486 | ID=Msa0357050-mRNA-1:five_prime_utr;Parent=Msa0357050-mRNA-1 |
chr3_1 | five_prime_UTR | 37540619 | 37540643 | 37540619 | ID=Msa0357050-mRNA-1:five_prime_utr;Parent=Msa0357050-mRNA-1 |
chr3_1 | CDS | 37540644 | 37540810 | 37540644 | ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1 |
chr3_1 | CDS | 37540979 | 37541186 | 37540979 | ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1 |
chr3_1 | CDS | 37541385 | 37541564 | 37541385 | ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1 |
chr3_1 | CDS | 37542014 | 37542094 | 37542014 | ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1 |
chr3_1 | CDS | 37542168 | 37542331 | 37542168 | ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1 |
chr3_1 | CDS | 37542831 | 37542967 | 37542831 | ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1 |
chr3_1 | CDS | 37543405 | 37543520 | 37543405 | ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1 |
chr3_1 | CDS | 37543953 | 37544201 | 37543953 | ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1 |
chr3_1 | three_prime_UTR | 37544202 | 37544654 | 37544202 | ID=Msa0357050-mRNA-1:three_prime_utr;Parent=Msa0357050-mRNA-1 |
Gene Sequence |
Protein sequence |