AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357050 MtrunA17_Chr3g0093871 98.152 433 8 0 1 433 1 433 0.0 879
Msa0357050 MtrunA17_Chr7g0255931 72.256 328 90 1 107 433 75 402 1.32e-172 489
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357050 AT2G26800.1 72.811 434 116 2 1 433 1 433 0.0 652
Msa0357050 AT2G26800.2 72.811 434 116 2 1 433 36 468 0.0 652
Msa0357050 AT2G26800.4 72.811 434 116 2 1 433 36 468 0.0 652
Msa0357050 AT2G26800.5 72.296 379 104 1 56 433 10 388 0.0 567
Msa0357050 AT2G26800.3 68.354 316 99 1 1 316 36 350 8.59e-157 447

Find 133 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGTTGCACCTTTAAATT+AGG 0.211209 3_1:-37542083 None:intergenic
AGTTCTGACTCCTAATTTAA+AGG 0.233362 3_1:+37542073 Msa0357050:CDS
CACCGTAGTTCCAATGCTTT+TGG 0.246522 3_1:+37543406 Msa0357050:CDS
TGGAGGGAGACAAGAATATT+TGG 0.260470 3_1:-37543497 None:intergenic
AGCTAAAGCACTATATGATA+TGG 0.269941 3_1:+37542897 Msa0357050:CDS
AAGCAGTTGGGGCGCCCCTC+TGG 0.273848 3_1:+37544124 Msa0357050:CDS
TATACCTGTGGGACCCATTT+AGG 0.281236 3_1:-37541547 None:intergenic
CATGCAAGATATGGCATATA+AGG 0.283069 3_1:+37541165 Msa0357050:CDS
ATCAAAACCAACGTTGATAT+TGG 0.285460 3_1:+37544070 Msa0357050:CDS
TTTACAGAATACCTTCAAAA+TGG 0.293301 3_1:-37544547 None:intergenic
CCACTTCACCATGTCAAGTT+TGG 0.300052 3_1:+37540634 Msa0357050:exon
TTTGAAGCTGCCGTTGCTGC+TGG 0.311234 3_1:+37542171 Msa0357050:CDS
CCGTCCACAAGTAGATAATT+TGG 0.313604 3_1:+37540733 Msa0357050:CDS
GACTTCATCGGCAAGCAGTT+GGG 0.324564 3_1:+37544112 Msa0357050:CDS
GGAGGAACTGGTCCTTCAAC+TGG 0.330205 3_1:-37542856 None:intergenic
AACTGGAATTGAGAGCTCTT+TGG 0.334848 3_1:-37542304 None:intergenic
CTCCCTGTGGTCATAGTCCT+TGG 0.337045 3_1:-37541061 None:intergenic
GATTCTTCAGTTGCTGGTCT+TGG 0.351386 3_1:+37543971 Msa0357050:CDS
GCTGTGGATTCTTCAGTTGC+TGG 0.359338 3_1:+37543965 Msa0357050:CDS
ATCTCACTTGGTGACACAAT+TGG 0.361351 3_1:+37542931 Msa0357050:CDS
TTTACGAAACCCTAGAAATT+GGG 0.363277 3_1:-37539616 None:intergenic
GAGAAGCTTGCATTTGCTAT+TGG 0.363951 3_1:-37544381 None:intergenic
TCTCACTTGGTGACACAATT+GGG 0.372918 3_1:+37542932 Msa0357050:CDS
GGGAGAAACACGATGAAATC+TGG 0.387304 3_1:+37541079 Msa0357050:CDS
TAACAAAGACATGCAAGATA+TGG 0.395825 3_1:+37541156 Msa0357050:CDS
CGTCCACAAGTAGATAATTT+GGG 0.396400 3_1:+37540734 Msa0357050:CDS
CATCAGCAGTGACTCGGTTA+AGG 0.398712 3_1:-37544165 None:intergenic
CTGGCAATCTGATGCCTCTC+AGG 0.410598 3_1:-37542052 None:intergenic
ATTCATAGACTAGCATCTAC+TGG 0.414544 3_1:+37541490 Msa0357050:CDS
AATTCAATCTTTACATCTGT+TGG 0.426921 3_1:-37541466 None:intergenic
TGAAGAAAACGTTGAGGGAT+AGG 0.427797 3_1:-37539642 None:intergenic
CGACTTCATCGGCAAGCAGT+TGG 0.429165 3_1:+37544111 Msa0357050:CDS
AAATAAATGAATAAGTTAGT+TGG 0.431657 3_1:-37539501 None:intergenic
ATATAGATGTTATCATATCT+TGG 0.438779 3_1:-37544191 None:intergenic
TCTTCAGTTGCTGGTCTTGG+TGG 0.441483 3_1:+37543974 Msa0357050:CDS
ACAAGTAGATAATTTGGGTA+TGG 0.441687 3_1:+37540739 Msa0357050:CDS
TCCACTCACGTTGATGAGTT+AGG 0.442451 3_1:+37544336 Msa0357050:three_prime_UTR
GGTGGCTGTCCATATGCTAA+GGG 0.446426 3_1:+37543992 Msa0357050:CDS
TGGTGGCTGTCCATATGCTA+AGG 0.451026 3_1:+37543991 Msa0357050:CDS
TTAGTTGGTTGGTGAGGGGA+TGG 0.465921 3_1:-37539486 None:intergenic
ATCAGCAGTGACTCGGTTAA+GGG 0.471542 3_1:-37544164 None:intergenic
TTTGAAGGTATTCTGTAAAG+TGG 0.472562 3_1:+37544551 Msa0357050:three_prime_UTR
ATAAGTTAGTTGGTTGGTGA+GGG 0.475102 3_1:-37539491 None:intergenic
ATGGGAAACTGCTTTATTGA+AGG 0.479991 3_1:+37540758 Msa0357050:CDS
GCCATTACAGCCAAAAGCAT+TGG 0.482879 3_1:-37543416 None:intergenic
ACAATTGGGGTAGGCACGCC+AGG 0.486021 3_1:+37542946 Msa0357050:CDS
AAGTTAGCTGGACACGACTA+AGG 0.486476 3_1:-37544642 None:intergenic
TTTGTTAAGATAGTTGAAGT+TGG 0.487269 3_1:+37541406 Msa0357050:CDS
TTTAAATTAGGAGTCAGAAC+TGG 0.489900 3_1:-37542071 None:intergenic
GCTAAAGCACTATATGATAT+GGG 0.494567 3_1:+37542898 Msa0357050:CDS
ATGATGTATAGTTAGCTATA+CGG 0.495826 3_1:+37544457 Msa0357050:three_prime_UTR
GAAGAAAACGTTGAGGGATA+GGG 0.496510 3_1:-37539641 None:intergenic
GAGCTCTCAATTCCAGTTCG+AGG 0.500214 3_1:+37542309 Msa0357050:CDS
TCATGCTTGGCAGCTTGTCA+TGG 0.500596 3_1:-37540670 None:intergenic
CAAGTAGATAATTTGGGTAT+GGG 0.504928 3_1:+37540740 Msa0357050:CDS
AGAGTTCAGAGGTTCTCATC+TGG 0.505085 3_1:+37540704 Msa0357050:CDS
CAGAAACATACCCTTGGAAA+AGG 0.505637 3_1:+37541002 Msa0357050:CDS
AATAAGTTAGTTGGTTGGTG+AGG 0.508433 3_1:-37539492 None:intergenic
CTGTCCATGGTACTCATGCT+TGG 0.511059 3_1:-37540683 None:intergenic
ACTTCATCGGCAAGCAGTTG+GGG 0.512566 3_1:+37544113 Msa0357050:CDS
ATCCAGGTGATTCAACCAAT+GGG 0.512862 3_1:+37544246 Msa0357050:three_prime_UTR
ATTGGAAAGCTCATGTCAGC+TGG 0.513314 3_1:+37544088 Msa0357050:CDS
ATCCCATTGGTTGAATCACC+TGG 0.521698 3_1:-37544248 None:intergenic
CACAAGTGACAGCTCGATAG+CGG 0.523310 3_1:-37542278 None:intergenic
TATCCAGGTGATTCAACCAA+TGG 0.525894 3_1:+37544245 Msa0357050:three_prime_UTR
TCAACTATCTTAACAAACTC+AGG 0.528412 3_1:-37541400 None:intergenic
ATCTCCTAAATGGGTCCCAC+AGG 0.529084 3_1:+37541543 Msa0357050:CDS
TTCTCTAGCTCCAGCAGCAA+CGG 0.529157 3_1:-37542181 None:intergenic
CTTCACCATGTCAAGTTTGG+AGG 0.529375 3_1:+37540637 Msa0357050:exon
AGCCAAAAGCATTGGAACTA+CGG 0.530502 3_1:-37543408 None:intergenic
GGCAGCTTGTCATGGCCAAG+TGG 0.534171 3_1:-37540662 None:intergenic
GTCCACTTTCATGACACATA+CGG 0.536770 3_1:+37543464 Msa0357050:CDS
TCCACTTTCATGACACATAC+GGG 0.541191 3_1:+37543465 Msa0357050:CDS
AGAATTGAAGAAAACGTTGA+GGG 0.546967 3_1:-37539647 None:intergenic
GATGTTGTGTACATGCTGAA+TGG 0.548740 3_1:+37544040 Msa0357050:CDS
GTTGTTGGATGCCCAGTTGA+AGG 0.549854 3_1:+37542844 Msa0357050:CDS
AAATGAATAAGTTAGTTGGT+TGG 0.550498 3_1:-37539497 None:intergenic
TTACGAAACCCTAGAAATTG+GGG 0.550632 3_1:-37539615 None:intergenic
GTTGAAGTTGGACCAAGGGA+TGG 0.550966 3_1:+37541418 Msa0357050:CDS
ACAAGTGACAGCTCGATAGC+GGG 0.551127 3_1:-37542277 None:intergenic
TATTTGTTAACTTACTTGGA+GGG 0.551242 3_1:-37543513 None:intergenic
ATACCCAAATTATCTACTTG+TGG 0.551302 3_1:-37540737 None:intergenic
GTGTACATGCTGAATGGACT+TGG 0.556574 3_1:+37544046 Msa0357050:CDS
ATGTCAGCTGGCGACTTCAT+CGG 0.556641 3_1:+37544100 Msa0357050:CDS
GCCCGTATGTGTCATGAAAG+TGG 0.558059 3_1:-37543466 None:intergenic
TTCATAGACTAGCATCTACT+GGG 0.564553 3_1:+37541491 Msa0357050:CDS
AGTGACTCGGTTAAGGGCAA+TGG 0.564612 3_1:-37544158 None:intergenic
TACTGGGTTATCTGTCATTG+AGG 0.564876 3_1:+37541507 Msa0357050:CDS
TCAAGTTTGGAGGAGCCACT+TGG 0.565206 3_1:+37540647 Msa0357050:CDS
GGAGACAAGAATATTTGGAA+GGG 0.565627 3_1:-37543492 None:intergenic
GGGAGACAAGAATATTTGGA+AGG 0.577919 3_1:-37543493 None:intergenic
ATGGCAGTCTTTGAGCCAGA+GGG 0.579520 3_1:-37544139 None:intergenic
GGTTGTTTCGAAATCTCACT+TGG 0.579694 3_1:+37542919 Msa0357050:CDS
GATAGTTGAAGTTGGACCAA+GGG 0.581744 3_1:+37541414 Msa0357050:CDS
TGGACTGAAAGAGTCACCTC+GGG 0.587158 3_1:-37541041 None:intergenic
CATATAGAATGATATCCCAT+TGG 0.589144 3_1:-37544261 None:intergenic
GAGCTTTCCAATATCAACGT+TGG 0.590179 3_1:-37544077 None:intergenic
AGCTCTCAATTCCAGTTCGA+GGG 0.594177 3_1:+37542310 Msa0357050:CDS
TGGGCAATGCAGTTTATGAA+AGG 0.595135 3_1:+37541373 Msa0357050:intron
AAGAATTGAAGAAAACGTTG+AGG 0.595942 3_1:-37539648 None:intergenic
GAGGAACTGGTCCTTCAACT+GGG 0.597731 3_1:-37542855 None:intergenic
GTGGCTGTCCATATGCTAAG+GGG 0.598484 3_1:+37543993 Msa0357050:CDS
ACACAGCAGAAACATACCCT+TGG 0.600138 3_1:+37540996 Msa0357050:CDS
TGGAAGCATCAGCAGTGACT+CGG 0.600270 3_1:-37544171 None:intergenic
CCAAATTATCTACTTGTGGA+CGG 0.600561 3_1:-37540733 None:intergenic
CCAAACTTGACATGGTGAAG+TGG 0.606059 3_1:-37540634 None:intergenic
TGGCTCCTCCAAACTTGACA+TGG 0.606063 3_1:-37540642 None:intergenic
TTTCATCGTGTTTCTCCCTG+TGG 0.606846 3_1:-37541074 None:intergenic
AATGGCAGTCTTTGAGCCAG+AGG 0.609686 3_1:-37544140 None:intergenic
TGGCTGTCCATATGCTAAGG+GGG 0.610224 3_1:+37543994 Msa0357050:CDS
TAAGTTAGTTGGTTGGTGAG+GGG 0.612642 3_1:-37539490 None:intergenic
ACAGAATACCTTCAAAATGG+AGG 0.613881 3_1:-37544544 None:intergenic
AGTCCAAGGACTATGACCAC+AGG 0.615138 3_1:+37541058 Msa0357050:CDS
AGGTATGTATCATGCGTTGT+TGG 0.615911 3_1:+37542829 Msa0357050:intron
TCCTAACTCATCAACGTGAG+TGG 0.618319 3_1:-37544337 None:intergenic
CTTGGTGACACAATTGGGGT+AGG 0.625438 3_1:+37542937 Msa0357050:CDS
GAGGTGACTCTTTCAGTCCA+AGG 0.626999 3_1:+37541044 Msa0357050:CDS
GGCATCAGGAAATGTAGCGA+CGG 0.627133 3_1:+37544015 Msa0357050:CDS
ATAGATGGGAATAAGTGCTG+TGG 0.633320 3_1:+37543949 Msa0357050:intron
AGATAGTTGAAGTTGGACCA+AGG 0.636448 3_1:+37541413 Msa0357050:CDS
GAACCTCTGAACTCTGTCCA+TGG 0.637112 3_1:-37540696 None:intergenic
ATACACAACTTAGTGCATGA+TGG 0.641557 3_1:-37544436 None:intergenic
TTGGACTGAAAGAGTCACCT+CGG 0.641749 3_1:-37541042 None:intergenic
CTCACTTGGTGACACAATTG+GGG 0.642342 3_1:+37542933 Msa0357050:CDS
TTGACTATACTGGTAATCTG+AGG 0.644486 3_1:-37541125 None:intergenic
TACGAAACCCTAGAAATTGG+GGG 0.648510 3_1:-37539614 None:intergenic
TGGCAGTCTTTGAGCCAGAG+GGG 0.660951 3_1:-37544138 None:intergenic
GCTGCCAAGCATGAGTACCA+TGG 0.664679 3_1:+37540679 Msa0357050:CDS
GTCCAAGGACTATGACCACA+GGG 0.671076 3_1:+37541059 Msa0357050:CDS
TGGTAATCTGAGGTACAAAG+TGG 0.671809 3_1:-37541115 None:intergenic
CAAGCAGTTCATAACCTGAG+AGG 0.688642 3_1:+37542038 Msa0357050:CDS
GTACCATGGACAGAGTTCAG+AGG 0.731970 3_1:+37540693 Msa0357050:CDS
CAAACAAGAGACATGTCCCG+AGG 0.735346 3_1:+37541025 Msa0357050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATATATTTTTTAAT+TGG - chr3_1:37543055-37543074 None:intergenic 0.0%
!! AAAACTATAACATTATATAT+TGG - chr3_1:37539757-37539776 None:intergenic 10.0%
!! TCTATTAAATTATAATTCTT+TGG + chr3_1:37541232-37541251 Msa0357050:intron 10.0%
!! AAGTTAAATAAATATAACAA+AGG - chr3_1:37541582-37541601 None:intergenic 10.0%
!!! TATCTATATTTTACATTTAT+AGG + chr3_1:37542146-37542165 Msa0357050:intron 10.0%
!!! ATCTATATTTTACATTTATA+GGG + chr3_1:37542147-37542166 Msa0357050:intron 10.0%
!!! TTTCATTTATTTTTGTTTAT+TGG + chr3_1:37543545-37543564 Msa0357050:intron 10.0%
!! AAATAAATGAATAAGTTAGT+TGG - chr3_1:37539504-37539523 None:intergenic 15.0%
!! AAAAATTGTAATTCATTCTT+TGG - chr3_1:37539905-37539924 None:intergenic 15.0%
!!! AGATACTTAAATTTTTTAAC+TGG + chr3_1:37541353-37541372 Msa0357050:intron 15.0%
!!! GATACTTAAATTTTTTAACT+GGG + chr3_1:37541354-37541373 Msa0357050:intron 15.0%
!!! TCTATATTTTACATTTATAG+GGG + chr3_1:37542148-37542167 Msa0357050:intron 15.0%
!!! TAAATTTTTATCTTTTTGCT+AGG + chr3_1:37544581-37544600 Msa0357050:three_prime_UTR 15.0%
!!! GAATGAATTACAATTTTTGA+AGG + chr3_1:37539907-37539926 Msa0357050:intron 20.0%
!!! ACTAGTTTTTGCTTATATTT+GGG - chr3_1:37540012-37540031 None:intergenic 20.0%
!! ATATATAATTGGCAGATAAT+AGG - chr3_1:37540927-37540946 None:intergenic 20.0%
!! GGTTATGCTATATATATAAT+TGG - chr3_1:37540938-37540957 None:intergenic 20.0%
!!! ACCATTACCTTTTAATTTAT+GGG - chr3_1:37541683-37541702 None:intergenic 20.0%
!!! TACCATTACCTTTTAATTTA+TGG - chr3_1:37541684-37541703 None:intergenic 20.0%
!!! CATTTTGGAAGAAAATATAA+TGG - chr3_1:37541735-37541754 None:intergenic 20.0%
!! TTATTTGTGATCAACAAAAA+AGG + chr3_1:37541769-37541788 Msa0357050:intron 20.0%
!!! TGTAATCGTATCTTTTATAA+TGG - chr3_1:37541893-37541912 None:intergenic 20.0%
!! TCAAATGGGAAAAAAAAAAT+TGG - chr3_1:37542436-37542455 None:intergenic 20.0%
!! TCCTATAGAAAATATCAAAT+GGG - chr3_1:37542450-37542469 None:intergenic 20.0%
!! ATCCTATAGAAAATATCAAA+TGG - chr3_1:37542451-37542470 None:intergenic 20.0%
!!! TGTGGATATTGTAAATTTTA+CGG + chr3_1:37542748-37542767 Msa0357050:intron 20.0%
!!! TTTTATATTAAAGTCGAACT+TGG + chr3_1:37542999-37543018 Msa0357050:intron 20.0%
!! CAATTACTTGTATAGAAAAA+TGG - chr3_1:37543190-37543209 None:intergenic 20.0%
!!! TTATTATTTTAACTGTGATC+AGG + chr3_1:37543383-37543402 Msa0357050:intron 20.0%
!!! TTGATAGTTCATTCATTAAT+TGG - chr3_1:37543628-37543647 None:intergenic 20.0%
!! TATCAAACGACTATAATTAA+TGG + chr3_1:37543642-37543661 Msa0357050:intron 20.0%
!!! TGATTTGTTTAATCTTAATC+AGG - chr3_1:37543764-37543783 None:intergenic 20.0%
!! TTTGTTTGCATATAAATAGA+TGG + chr3_1:37543934-37543953 Msa0357050:intron 20.0%
!! TTGTTTGCATATAAATAGAT+GGG + chr3_1:37543935-37543954 Msa0357050:intron 20.0%
!! ATATAGATGTTATCATATCT+TGG - chr3_1:37544194-37544213 None:intergenic 20.0%
!! TAGCATAAAAATATATATCC+AGG + chr3_1:37544230-37544249 Msa0357050:three_prime_UTR 20.0%
!! AAAAACACTACCAAAAAAAA+AGG - chr3_1:37544611-37544630 None:intergenic 20.0%
! AAATGAATAAGTTAGTTGGT+TGG - chr3_1:37539500-37539519 None:intergenic 25.0%
! ATAAGAACGCGTAAAAATAA+AGG - chr3_1:37539554-37539573 None:intergenic 25.0%
!! GTCTAATTTTCATTCGTTTA+AGG + chr3_1:37539672-37539691 Msa0357050:five_prime_UTR 25.0%
! CTTCAAATTACAGCAAAATA+AGG - chr3_1:37539718-37539737 None:intergenic 25.0%
!!! CTTATTTTGCTGTAATTTGA+AGG + chr3_1:37539716-37539735 Msa0357050:intron 25.0%
! TAAAAACTACATTGTACTGT+TGG - chr3_1:37539955-37539974 None:intergenic 25.0%
!! ACAGTACAATGTAGTTTTTA+TGG + chr3_1:37539955-37539974 Msa0357050:intron 25.0%
!!! GACTAGTTTTTGCTTATATT+TGG - chr3_1:37540013-37540032 None:intergenic 25.0%
! GTCAAAAAAGTTTATGCATT+TGG + chr3_1:37540030-37540049 Msa0357050:intron 25.0%
! TAGATTTCACCATATAGAAT+AGG + chr3_1:37540485-37540504 Msa0357050:intron 25.0%
! TAATAAGTGCCTATTCTATA+TGG - chr3_1:37540497-37540516 None:intergenic 25.0%
! AAGTTTAAATTCATTGCAGT+TGG + chr3_1:37541294-37541313 Msa0357050:intron 25.0%
!! GTGATTTTGTCATATTTCTT+TGG + chr3_1:37541316-37541335 Msa0357050:intron 25.0%
! TTTGTTAAGATAGTTGAAGT+TGG + chr3_1:37541406-37541425 Msa0357050:CDS 25.0%
! AATTCAATCTTTACATCTGT+TGG - chr3_1:37541469-37541488 None:intergenic 25.0%
!!! TAGTTTTGTATCTCCTAAAT+GGG + chr3_1:37541534-37541553 Msa0357050:CDS 25.0%
! GATATTATGAATCATTGTTG+TGG + chr3_1:37541614-37541633 Msa0357050:intron 25.0%
! TCTCAATCCCATAAATTAAA+AGG + chr3_1:37541673-37541692 Msa0357050:intron 25.0%
! TCCCATAAATTAAAAGGTAA+TGG + chr3_1:37541679-37541698 Msa0357050:intron 25.0%
! TTCAGTTATAGAACAGAAAA+TGG - chr3_1:37541712-37541731 None:intergenic 25.0%
! TTGATCACAAATAAAAACTG+GGG - chr3_1:37541763-37541782 None:intergenic 25.0%
! GTTGATCACAAATAAAAACT+GGG - chr3_1:37541764-37541783 None:intergenic 25.0%
! TGTTGATCACAAATAAAAAC+TGG - chr3_1:37541765-37541784 None:intergenic 25.0%
!! TGTTTGGATTGAATGATTTT+GGG - chr3_1:37541832-37541851 None:intergenic 25.0%
! ATTAAAGTGGAGATATTTGA+TGG - chr3_1:37542368-37542387 None:intergenic 25.0%
! AACTTGCAAGTATATTAAAG+TGG - chr3_1:37542381-37542400 None:intergenic 25.0%
!! TCCCATTTGATATTTTCTAT+AGG + chr3_1:37542446-37542465 Msa0357050:intron 25.0%
!!! ATTGTTGTTTTGAGATGATT+TGG + chr3_1:37542637-37542656 Msa0357050:intron 25.0%
! GAGTTTCAAAAATACAAAGA+AGG - chr3_1:37542675-37542694 None:intergenic 25.0%
!!! TGTATTTTTGAAACTCAATC+AGG + chr3_1:37542679-37542698 Msa0357050:intron 25.0%
! ATTTACAATATCCACACAAA+GGG - chr3_1:37542744-37542763 None:intergenic 25.0%
! AATTTACAATATCCACACAA+AGG - chr3_1:37542745-37542764 None:intergenic 25.0%
!! AAGTCTTTGAAAATACGAAA+TGG - chr3_1:37543145-37543164 None:intergenic 25.0%
! TAATTGAAAGCAGAAATCAA+AGG + chr3_1:37543204-37543223 Msa0357050:intron 25.0%
! AATTGAAAGCAGAAATCAAA+GGG + chr3_1:37543205-37543224 Msa0357050:intron 25.0%
! TCAAACATTTAATTGAGACT+AGG + chr3_1:37543280-37543299 Msa0357050:intron 25.0%
!! TCAGAAAGAGTATGTATATT+CGG - chr3_1:37543359-37543378 None:intergenic 25.0%
!! TATTTGTTAACTTACTTGGA+GGG - chr3_1:37543516-37543535 None:intergenic 25.0%
!! AAGCTATTTGTTAACTTACT+TGG - chr3_1:37543520-37543539 None:intergenic 25.0%
! ACACATTACATATATAGAAG+AGG - chr3_1:37543595-37543614 None:intergenic 25.0%
!! TAGAATGTTTAACTTTAAGC+TGG + chr3_1:37543862-37543881 Msa0357050:intron 25.0%
!! AGAATGTTTAACTTTAAGCT+GGG + chr3_1:37543863-37543882 Msa0357050:intron 25.0%
!! TTTTGTTCTTCTTCTATAAC+TGG - chr3_1:37544314-37544333 None:intergenic 25.0%
! ATGATGTATAGTTAGCTATA+CGG + chr3_1:37544457-37544476 Msa0357050:three_prime_UTR 25.0%
!! ATTATTTACCTCCATTTTGA+AGG + chr3_1:37544536-37544555 Msa0357050:three_prime_UTR 25.0%
! TTTACAGAATACCTTCAAAA+TGG - chr3_1:37544550-37544569 None:intergenic 25.0%
AAATTGGGGGAATTTGAATA+TGG - chr3_1:37539604-37539623 None:intergenic 30.0%
TTTACGAAACCCTAGAAATT+GGG - chr3_1:37539619-37539638 None:intergenic 30.0%
! TTTTACGAAACCCTAGAAAT+TGG - chr3_1:37539620-37539639 None:intergenic 30.0%
AGAATTGAAGAAAACGTTGA+GGG - chr3_1:37539650-37539669 None:intergenic 30.0%
AAGAATTGAAGAAAACGTTG+AGG - chr3_1:37539651-37539670 None:intergenic 30.0%
!! ATTTTGCTGTAATTTGAAGG+TGG + chr3_1:37539719-37539738 Msa0357050:intron 30.0%
! CATGTCAATTTGTCACATTT+TGG + chr3_1:37539820-37539839 Msa0357050:intron 30.0%
! CAATTGTGATTAGTTGAATG+AGG + chr3_1:37539846-37539865 Msa0357050:intron 30.0%
AATATGCATTATCTGCTTTG+GGG - chr3_1:37539981-37540000 None:intergenic 30.0%
CAATATGCATTATCTGCTTT+GGG - chr3_1:37539982-37540001 None:intergenic 30.0%
TCAATATGCATTATCTGCTT+TGG - chr3_1:37539983-37540002 None:intergenic 30.0%
!! TTTTTGCTTATATTTGGGAC+CGG - chr3_1:37540007-37540026 None:intergenic 30.0%
!! CTTTTGCTTTTATTTGAGAC+CGG + chr3_1:37540087-37540106 Msa0357050:intron 30.0%
TAATTACTCGTCTTCTATGA+TGG + chr3_1:37540161-37540180 Msa0357050:intron 30.0%
! AGTTTTGCTCTGCATTTAAT+TGG + chr3_1:37540375-37540394 Msa0357050:intron 30.0%
! GTTTTGCTCTGCATTTAATT+GGG + chr3_1:37540376-37540395 Msa0357050:intron 30.0%
! TTTTGCTCTGCATTTAATTG+GGG + chr3_1:37540377-37540396 Msa0357050:intron 30.0%
CTAAATACAACTACAAGCAA+AGG - chr3_1:37540468-37540487 None:intergenic 30.0%
! GTATATATTTTCCTACAACC+TGG + chr3_1:37540528-37540547 Msa0357050:intron 30.0%
ATACCCAAATTATCTACTTG+TGG - chr3_1:37540740-37540759 None:intergenic 30.0%
ACAAGTAGATAATTTGGGTA+TGG + chr3_1:37540739-37540758 Msa0357050:CDS 30.0%
CAAGTAGATAATTTGGGTAT+GGG + chr3_1:37540740-37540759 Msa0357050:CDS 30.0%
CAGGAGTTAATGTAAAGTAA+AGG - chr3_1:37540890-37540909 None:intergenic 30.0%
TAACAAAGACATGCAAGATA+TGG + chr3_1:37541156-37541175 Msa0357050:CDS 30.0%
GTCATATTTCTTTGGTTAGT+TGG + chr3_1:37541324-37541343 Msa0357050:intron 30.0%
TCAACTATCTTAACAAACTC+AGG - chr3_1:37541403-37541422 None:intergenic 30.0%
!!! CTAGTTTTGTATCTCCTAAA+TGG + chr3_1:37541533-37541552 Msa0357050:CDS 30.0%
GGCATATAATATATACCTGT+GGG - chr3_1:37541561-37541580 None:intergenic 30.0%
AGGCATATAATATATACCTG+TGG - chr3_1:37541562-37541581 None:intergenic 30.0%
TGATCACAAATAAAAACTGG+GGG - chr3_1:37541762-37541781 None:intergenic 30.0%
! GTTTGGATTGAATGATTTTG+GGG - chr3_1:37541831-37541850 None:intergenic 30.0%
! CTGTTTGGATTGAATGATTT+TGG - chr3_1:37541833-37541852 None:intergenic 30.0%
TTCGATTTATGTCTTTCAGT+TGG + chr3_1:37541995-37542014 Msa0357050:intron 30.0%
TTTAAATTAGGAGTCAGAAC+TGG - chr3_1:37542074-37542093 None:intergenic 30.0%
! AGTTCTGACTCCTAATTTAA+AGG + chr3_1:37542073-37542092 Msa0357050:CDS 30.0%
GATAGTTGCACCTTTAAATT+AGG - chr3_1:37542086-37542105 None:intergenic 30.0%
CGTAGAATTTGATGTCTTAT+GGG - chr3_1:37542582-37542601 None:intergenic 30.0%
TCGTAGAATTTGATGTCTTA+TGG - chr3_1:37542583-37542602 None:intergenic 30.0%
TCTGTTGTACTTATTCCAAT+CGG + chr3_1:37542787-37542806 Msa0357050:intron 30.0%
!! AATTTAAATACAGCACCGAT+TGG - chr3_1:37542805-37542824 None:intergenic 30.0%
!! ATCGGTGCTGTATTTAAATT+TGG + chr3_1:37542805-37542824 Msa0357050:intron 30.0%
GTGCTGTATTTAAATTTGGT+AGG + chr3_1:37542809-37542828 Msa0357050:intron 30.0%
! AGCTAAAGCACTATATGATA+TGG + chr3_1:37542897-37542916 Msa0357050:CDS 30.0%
! GCTAAAGCACTATATGATAT+GGG + chr3_1:37542898-37542917 Msa0357050:CDS 30.0%
CAGAAATCAAAGGGAAAATA+AGG + chr3_1:37543214-37543233 Msa0357050:intron 30.0%
TAATTGAGACTAGGAAGAAT+TGG + chr3_1:37543289-37543308 Msa0357050:intron 30.0%
AATTGAGACTAGGAAGAATT+GGG + chr3_1:37543290-37543309 Msa0357050:intron 30.0%
TATGTATATTCGGGATTAAG+AGG - chr3_1:37543349-37543368 None:intergenic 30.0%
! CAGAAAGAGTATGTATATTC+GGG - chr3_1:37543358-37543377 None:intergenic 30.0%
! CTATTTGTTAACTTACTTGG+AGG - chr3_1:37543517-37543536 None:intergenic 30.0%
AATACCATGTACATCAGATT+TGG + chr3_1:37543684-37543703 Msa0357050:intron 30.0%
AAATCCAAATCTGATGTACA+TGG - chr3_1:37543691-37543710 None:intergenic 30.0%
! CAGTTATTAATGGACATTCT+TGG + chr3_1:37543911-37543930 Msa0357050:intron 30.0%
ATCAAAACCAACGTTGATAT+TGG + chr3_1:37544070-37544089 Msa0357050:CDS 30.0%
CATATAGAATGATATCCCAT+TGG - chr3_1:37544264-37544283 None:intergenic 30.0%
!! TTTGAAGGTATTCTGTAAAG+TGG + chr3_1:37544551-37544570 Msa0357050:three_prime_UTR 30.0%
!!! TTTTGGTAGTGTTTTTTGCT+AGG + chr3_1:37544615-37544634 Msa0357050:three_prime_UTR 30.0%
!! ATAAGTTAGTTGGTTGGTGA+GGG - chr3_1:37539494-37539513 None:intergenic 35.0%
! AATAAGTTAGTTGGTTGGTG+AGG - chr3_1:37539495-37539514 None:intergenic 35.0%
TTCAAATTCCCCCAATTTCT+AGG + chr3_1:37539606-37539625 Msa0357050:five_prime_UTR 35.0%
TCAAATTCCCCCAATTTCTA+GGG + chr3_1:37539607-37539626 Msa0357050:five_prime_UTR 35.0%
TTACGAAACCCTAGAAATTG+GGG - chr3_1:37539618-37539637 None:intergenic 35.0%
GCAGATAATGCATATTGATC+CGG + chr3_1:37539985-37540004 Msa0357050:intron 35.0%
TCGTCTTCTATGATGGTTAA+TGG + chr3_1:37540168-37540187 Msa0357050:intron 35.0%
CTTCTATGATGGTTAATGGA+AGG + chr3_1:37540172-37540191 Msa0357050:intron 35.0%
!! AAAACCCACATTAGTTTGTC+TGG + chr3_1:37540261-37540280 Msa0357050:intron 35.0%
CCAAATTATCTACTTGTGGA+CGG - chr3_1:37540736-37540755 None:intergenic 35.0%
CGTCCACAAGTAGATAATTT+GGG + chr3_1:37540734-37540753 Msa0357050:CDS 35.0%
! ATGGGAAACTGCTTTATTGA+AGG + chr3_1:37540758-37540777 Msa0357050:CDS 35.0%
ATAGGTCAGTAATACATGAC+AGG - chr3_1:37540909-37540928 None:intergenic 35.0%
TTGACTATACTGGTAATCTG+AGG - chr3_1:37541128-37541147 None:intergenic 35.0%
!! TATTGCGCTTTTGACTATAC+TGG - chr3_1:37541138-37541157 None:intergenic 35.0%
CATGCAAGATATGGCATATA+AGG + chr3_1:37541165-37541184 Msa0357050:CDS 35.0%
ATGGCATATAAGGTATGCAA+CGG + chr3_1:37541175-37541194 Msa0357050:intron 35.0%
! TCATTTTGTAATCCATCCCT+TGG - chr3_1:37541433-37541452 None:intergenic 35.0%
ATTCATAGACTAGCATCTAC+TGG + chr3_1:37541490-37541509 Msa0357050:CDS 35.0%
TTCATAGACTAGCATCTACT+GGG + chr3_1:37541491-37541510 Msa0357050:CDS 35.0%
! AAAACTGGGGGAAATCATTT+TGG - chr3_1:37541750-37541769 None:intergenic 35.0%
GAATCTGTTGGGAAGAAAAA+TGG - chr3_1:37541803-37541822 None:intergenic 35.0%
CATCACAGTGTACTTGATTA+AGG - chr3_1:37541951-37541970 None:intergenic 35.0%
AAATCGAATGACATTGAAGC+AGG - chr3_1:37541983-37542002 None:intergenic 35.0%
AAGACATCTGAATGTAAAGC+TGG - chr3_1:37542127-37542146 None:intergenic 35.0%
AAAAATGTATACCCTCGAAC+TGG - chr3_1:37542324-37542343 None:intergenic 35.0%
ATATACTTGCAAGTTGCAAG+TGG + chr3_1:37542386-37542405 Msa0357050:intron 35.0%
TATACTTGCAAGTTGCAAGT+GGG + chr3_1:37542387-37542406 Msa0357050:intron 35.0%
CGAATATAGAGAAGATTGCA+GGG - chr3_1:37542486-37542505 None:intergenic 35.0%
CCTGCAATCTTCTCTATATT+CGG + chr3_1:37542484-37542503 Msa0357050:intron 35.0%
AAGTTCATCTGACATTGAAC+TGG + chr3_1:37542531-37542550 Msa0357050:intron 35.0%
ATGTCTTATGGGATAGCATT+AGG - chr3_1:37542571-37542590 None:intergenic 35.0%
TGTAACTGTTAAGACCTTGA+CGG - chr3_1:37542710-37542729 None:intergenic 35.0%
!!! ACATAAGCTACTTTTGATGG+AGG - chr3_1:37542877-37542896 None:intergenic 35.0%
!!! GCTACATAAGCTACTTTTGA+TGG - chr3_1:37542880-37542899 None:intergenic 35.0%
AAGTTTGTGCTTAATTGGGT+TGG - chr3_1:37543079-37543098 None:intergenic 35.0%
AACCCAATTAAGCACAAACT+TGG + chr3_1:37543078-37543097 Msa0357050:intron 35.0%
ACCCAATTAAGCACAAACTT+GGG + chr3_1:37543079-37543098 Msa0357050:intron 35.0%
ACCCAAGTTTGTGCTTAATT+GGG - chr3_1:37543083-37543102 None:intergenic 35.0%
AACCCAAGTTTGTGCTTAAT+TGG - chr3_1:37543084-37543103 None:intergenic 35.0%
ATTGAGACTAGGAAGAATTG+GGG + chr3_1:37543291-37543310 Msa0357050:intron 35.0%
GGAGACAAGAATATTTGGAA+GGG - chr3_1:37543495-37543514 None:intergenic 35.0%
! AGATTTGGATTTTCTGCAGT+TGG + chr3_1:37543699-37543718 Msa0357050:intron 35.0%
!! TTTTCTAGTCGTAAGGAATC+TGG + chr3_1:37543826-37543845 Msa0357050:intron 35.0%
! TGGGTCTGCATTTTATGATT+CGG + chr3_1:37543882-37543901 Msa0357050:intron 35.0%
TCGGTAGTCTCAGTTATTAA+TGG + chr3_1:37543901-37543920 Msa0357050:intron 35.0%
ATACACAACTTAGTGCATGA+TGG - chr3_1:37544439-37544458 None:intergenic 35.0%
ACAGAATACCTTCAAAATGG+AGG - chr3_1:37544547-37544566 None:intergenic 35.0%
!!! GCTAGGTTAGCCTTTTTTTT+TGG + chr3_1:37544598-37544617 Msa0357050:three_prime_UTR 35.0%
!! TAAGTTAGTTGGTTGGTGAG+GGG - chr3_1:37539493-37539512 None:intergenic 40.0%
TACGAAACCCTAGAAATTGG+GGG - chr3_1:37539617-37539636 None:intergenic 40.0%
GAAGAAAACGTTGAGGGATA+GGG - chr3_1:37539644-37539663 None:intergenic 40.0%
TGAAGAAAACGTTGAGGGAT+AGG - chr3_1:37539645-37539664 None:intergenic 40.0%
AAGCTGAGACATACTTCTTC+CGG - chr3_1:37540109-37540128 None:intergenic 40.0%
!! AAGTATGTCTCAGCTTGCTA+TGG + chr3_1:37540113-37540132 Msa0357050:intron 40.0%
ACCACCAGACAAACTAATGT+GGG - chr3_1:37540268-37540287 None:intergenic 40.0%
!! ATGGACTAGCCAACTGAAAT+TGG - chr3_1:37540351-37540370 None:intergenic 40.0%
! TTTCAGTTGGCTAGTCCATA+AGG + chr3_1:37540352-37540371 Msa0357050:intron 40.0%
ATGCAGAGCAAAACTCCTTA+TGG - chr3_1:37540370-37540389 None:intergenic 40.0%
!!! GGTCTTTTGACTGGATTAGT+CGG + chr3_1:37540441-37540460 Msa0357050:intron 40.0%
ATGATTTCTACCATTTCGCC+AGG - chr3_1:37540549-37540568 None:intergenic 40.0%
CCGTCCACAAGTAGATAATT+TGG + chr3_1:37540733-37540752 Msa0357050:CDS 40.0%
! CTGCACGGAATATAGTCTTA+AGG - chr3_1:37540959-37540978 None:intergenic 40.0%
TCTTCATTGTCTTCACTGCA+CGG - chr3_1:37540974-37540993 None:intergenic 40.0%
CAGAAACATACCCTTGGAAA+AGG + chr3_1:37541002-37541021 Msa0357050:CDS 40.0%
!! CTCTTGTTTGCCTTTTCCAA+GGG - chr3_1:37541015-37541034 None:intergenic 40.0%
!! TCTCTTGTTTGCCTTTTCCA+AGG - chr3_1:37541016-37541035 None:intergenic 40.0%
! TGGTAATCTGAGGTACAAAG+TGG - chr3_1:37541118-37541137 None:intergenic 40.0%
TGGGCAATGCAGTTTATGAA+AGG + chr3_1:37541373-37541392 Msa0357050:intron 40.0%
AGATAGTTGAAGTTGGACCA+AGG + chr3_1:37541413-37541432 Msa0357050:CDS 40.0%
GATAGTTGAAGTTGGACCAA+GGG + chr3_1:37541414-37541433 Msa0357050:CDS 40.0%
TACTGGGTTATCTGTCATTG+AGG + chr3_1:37541507-37541526 Msa0357050:CDS 40.0%
TTGGGGTGAATGAATCTGTT+GGG - chr3_1:37541814-37541833 None:intergenic 40.0%
! TTTGGGGTGAATGAATCTGT+TGG - chr3_1:37541815-37541834 None:intergenic 40.0%
GTAAATGCGTAAGGTCTGTT+TGG - chr3_1:37541848-37541867 None:intergenic 40.0%
AATGTAAAGCTGGCAACGTA+TGG - chr3_1:37542117-37542136 None:intergenic 40.0%
AACTGGAATTGAGAGCTCTT+TGG - chr3_1:37542307-37542326 None:intergenic 40.0%
CCGAATATAGAGAAGATTGC+AGG - chr3_1:37542487-37542506 None:intergenic 40.0%
GCAATCTTCTCTATATTCGG+TGG + chr3_1:37542487-37542506 Msa0357050:intron 40.0%
!!! GTTTTGAGATGATTTGGCAC+TGG + chr3_1:37542643-37542662 Msa0357050:intron 40.0%
AGGTATGTATCATGCGTTGT+TGG + chr3_1:37542829-37542848 Msa0357050:intron 40.0%
! GGTTGTTTCGAAATCTCACT+TGG + chr3_1:37542919-37542938 Msa0357050:CDS 40.0%
! ATCTCACTTGGTGACACAAT+TGG + chr3_1:37542931-37542950 Msa0357050:CDS 40.0%
! TCTCACTTGGTGACACAATT+GGG + chr3_1:37542932-37542951 Msa0357050:CDS 40.0%
AAGCCATCTAACTCATTACC+TGG - chr3_1:37542967-37542986 None:intergenic 40.0%
!! AGCCAAAAGCATTGGAACTA+CGG - chr3_1:37543411-37543430 None:intergenic 40.0%
!! TCCAATGCTTTTGGCTGTAA+TGG + chr3_1:37543415-37543434 Msa0357050:CDS 40.0%
GTCCACTTTCATGACACATA+CGG + chr3_1:37543464-37543483 Msa0357050:CDS 40.0%
TCCACTTTCATGACACATAC+GGG + chr3_1:37543465-37543484 Msa0357050:CDS 40.0%
GGGAGACAAGAATATTTGGA+AGG - chr3_1:37543496-37543515 None:intergenic 40.0%
TGGAGGGAGACAAGAATATT+TGG - chr3_1:37543500-37543519 None:intergenic 40.0%
!! CTCAGGATTTTCTAGTCGTA+AGG + chr3_1:37543819-37543838 Msa0357050:intron 40.0%
! ATAGATGGGAATAAGTGCTG+TGG + chr3_1:37543949-37543968 Msa0357050:intron 40.0%
GATGTTGTGTACATGCTGAA+TGG + chr3_1:37544040-37544059 Msa0357050:CDS 40.0%
GAGCTTTCCAATATCAACGT+TGG - chr3_1:37544080-37544099 None:intergenic 40.0%
TATCCAGGTGATTCAACCAA+TGG + chr3_1:37544245-37544264 Msa0357050:three_prime_UTR 40.0%
ATCCAGGTGATTCAACCAAT+GGG + chr3_1:37544246-37544265 Msa0357050:three_prime_UTR 40.0%
!! GAGAAGCTTGCATTTGCTAT+TGG - chr3_1:37544384-37544403 None:intergenic 40.0%
!! ATGTCTCAGCTTGCTATGGA+TGG + chr3_1:37540117-37540136 Msa0357050:intron 45.0%
!! TGTCTCAGCTTGCTATGGAT+GGG + chr3_1:37540118-37540137 Msa0357050:intron 45.0%
! TGCTATGGATGGGCAAGTTT+TGG + chr3_1:37540128-37540147 Msa0357050:intron 45.0%
!! ACCCACATTAGTTTGTCTGG+TGG + chr3_1:37540264-37540283 Msa0357050:intron 45.0%
CACCACCAGACAAACTAATG+TGG - chr3_1:37540269-37540288 None:intergenic 45.0%
! CTTGAGAGAAGTACACTCCA+AGG - chr3_1:37540303-37540322 None:intergenic 45.0%
CTTGGAGTGTACTTCTCTCA+AGG + chr3_1:37540301-37540320 Msa0357050:intron 45.0%
TGTACTTCTCTCAAGGTCTC+AGG + chr3_1:37540308-37540327 Msa0357050:intron 45.0%
TAGCCAACTGAAATTGGCAC+CGG - chr3_1:37540345-37540364 None:intergenic 45.0%
!! GATTGGTCTCCTGGATTAGT+CGG + chr3_1:37540420-37540439 Msa0357050:intron 45.0%
GTCAAAAGACCGACTAATCC+AGG - chr3_1:37540432-37540451 None:intergenic 45.0%
!!! GGATTAGTCGGTCTTTTGAC+TGG + chr3_1:37540432-37540451 Msa0357050:intron 45.0%
TTTCCTACAACCTGGCGAAA+TGG + chr3_1:37540536-37540555 Msa0357050:intron 45.0%
GTGGATGAGAGAAACAAAGC+TGG - chr3_1:37540618-37540637 None:intergenic 45.0%
CCAAACTTGACATGGTGAAG+TGG - chr3_1:37540637-37540656 None:intergenic 45.0%
CCACTTCACCATGTCAAGTT+TGG + chr3_1:37540634-37540653 Msa0357050:exon 45.0%
CTTCACCATGTCAAGTTTGG+AGG + chr3_1:37540637-37540656 Msa0357050:exon 45.0%
AGAGTTCAGAGGTTCTCATC+TGG + chr3_1:37540704-37540723 Msa0357050:CDS 45.0%
ACACAGCAGAAACATACCCT+TGG + chr3_1:37540996-37541015 Msa0357050:CDS 45.0%
TTGGACTGAAAGAGTCACCT+CGG - chr3_1:37541045-37541064 None:intergenic 45.0%
TTTCATCGTGTTTCTCCCTG+TGG - chr3_1:37541077-37541096 None:intergenic 45.0%
GGGAGAAACACGATGAAATC+TGG + chr3_1:37541079-37541098 Msa0357050:CDS 45.0%
GCAGCAGTACTTTCTGTTCA+AGG + chr3_1:37541197-37541216 Msa0357050:intron 45.0%
TATACCTGTGGGACCCATTT+AGG - chr3_1:37541550-37541569 None:intergenic 45.0%
AACTGCGCAGTAAATGCGTA+AGG - chr3_1:37541857-37541876 None:intergenic 45.0%
CAAGCAGTTCATAACCTGAG+AGG + chr3_1:37542038-37542057 Msa0357050:CDS 45.0%
AGCTCTCAATTCCAGTTCGA+GGG + chr3_1:37542310-37542329 Msa0357050:CDS 45.0%
CATGTGAAAGTCCCTTTGTG+TGG + chr3_1:37542730-37542749 Msa0357050:intron 45.0%
!!! GCTACTTTTGATGGAGGAAC+TGG - chr3_1:37542871-37542890 None:intergenic 45.0%
! CTCACTTGGTGACACAATTG+GGG + chr3_1:37542933-37542952 Msa0357050:CDS 45.0%
ACGCCAGGTAATGAGTTAGA+TGG + chr3_1:37542961-37542980 Msa0357050:intron 45.0%
! CACCGTAGTTCCAATGCTTT+TGG + chr3_1:37543406-37543425 Msa0357050:CDS 45.0%
! GCCATTACAGCCAAAAGCAT+TGG - chr3_1:37543419-37543438 None:intergenic 45.0%
! TGGACAGCAAGCTTTTCTGT+TGG - chr3_1:37543449-37543468 None:intergenic 45.0%
CTGCTAGAGATACATGACTC+TGG + chr3_1:37543792-37543811 Msa0357050:intron 45.0%
TACATGACTCTGGCAAACTC+AGG + chr3_1:37543802-37543821 Msa0357050:intron 45.0%
! GATTCTTCAGTTGCTGGTCT+TGG + chr3_1:37543971-37543990 Msa0357050:CDS 45.0%
! GTGTACATGCTGAATGGACT+TGG + chr3_1:37544046-37544065 Msa0357050:CDS 45.0%
ATTGGAAAGCTCATGTCAGC+TGG + chr3_1:37544088-37544107 Msa0357050:CDS 45.0%
!! ATCAGCAGTGACTCGGTTAA+GGG - chr3_1:37544167-37544186 None:intergenic 45.0%
! ATCCCATTGGTTGAATCACC+TGG - chr3_1:37544251-37544270 None:intergenic 45.0%
! TCCACTCACGTTGATGAGTT+AGG + chr3_1:37544336-37544355 Msa0357050:three_prime_UTR 45.0%
TCCTAACTCATCAACGTGAG+TGG - chr3_1:37544340-37544359 None:intergenic 45.0%
!! TTAGTTGGTTGGTGAGGGGA+TGG - chr3_1:37539489-37539508 None:intergenic 50.0%
AAGTACACTCCAAGGTCCCA+AGG - chr3_1:37540295-37540314 None:intergenic 50.0%
AGCCAACTGAAATTGGCACC+GGG - chr3_1:37540344-37540363 None:intergenic 50.0%
CTACCATTTCGCCAGGTTGT+AGG - chr3_1:37540542-37540561 None:intergenic 50.0%
TGGCTCCTCCAAACTTGACA+TGG - chr3_1:37540645-37540664 None:intergenic 50.0%
TCAAGTTTGGAGGAGCCACT+TGG + chr3_1:37540647-37540666 Msa0357050:CDS 50.0%
TCATGCTTGGCAGCTTGTCA+TGG - chr3_1:37540673-37540692 None:intergenic 50.0%
CTGTCCATGGTACTCATGCT+TGG - chr3_1:37540686-37540705 None:intergenic 50.0%
GTACCATGGACAGAGTTCAG+AGG + chr3_1:37540693-37540712 Msa0357050:CDS 50.0%
GAACCTCTGAACTCTGTCCA+TGG - chr3_1:37540699-37540718 None:intergenic 50.0%
CAAACAAGAGACATGTCCCG+AGG + chr3_1:37541025-37541044 Msa0357050:CDS 50.0%
TGGACTGAAAGAGTCACCTC+GGG - chr3_1:37541044-37541063 None:intergenic 50.0%
GAGGTGACTCTTTCAGTCCA+AGG + chr3_1:37541044-37541063 Msa0357050:CDS 50.0%
AGTCCAAGGACTATGACCAC+AGG + chr3_1:37541058-37541077 Msa0357050:CDS 50.0%
GTCCAAGGACTATGACCACA+GGG + chr3_1:37541059-37541078 Msa0357050:CDS 50.0%
GTTGAAGTTGGACCAAGGGA+TGG + chr3_1:37541418-37541437 Msa0357050:CDS 50.0%
ATCTCCTAAATGGGTCCCAC+AGG + chr3_1:37541543-37541562 Msa0357050:CDS 50.0%
! TTCTCTAGCTCCAGCAGCAA+CGG - chr3_1:37542184-37542203 None:intergenic 50.0%
ACAAGTGACAGCTCGATAGC+GGG - chr3_1:37542280-37542299 None:intergenic 50.0%
CACAAGTGACAGCTCGATAG+CGG - chr3_1:37542281-37542300 None:intergenic 50.0%
GAGCTCTCAATTCCAGTTCG+AGG + chr3_1:37542309-37542328 Msa0357050:CDS 50.0%
TCAATCAGGTCAAGCCGTCA+AGG + chr3_1:37542693-37542712 Msa0357050:intron 50.0%
GTTGTTGGATGCCCAGTTGA+AGG + chr3_1:37542844-37542863 Msa0357050:CDS 50.0%
GAGGAACTGGTCCTTCAACT+GGG - chr3_1:37542858-37542877 None:intergenic 50.0%
! CTTGGTGACACAATTGGGGT+AGG + chr3_1:37542937-37542956 Msa0357050:CDS 50.0%
GCCCGTATGTGTCATGAAAG+TGG - chr3_1:37543469-37543488 None:intergenic 50.0%
GCTGTGGATTCTTCAGTTGC+TGG + chr3_1:37543965-37543984 Msa0357050:CDS 50.0%
!! TCTTCAGTTGCTGGTCTTGG+TGG + chr3_1:37543974-37543993 Msa0357050:CDS 50.0%
TGGTGGCTGTCCATATGCTA+AGG + chr3_1:37543991-37544010 Msa0357050:CDS 50.0%
GGTGGCTGTCCATATGCTAA+GGG + chr3_1:37543992-37544011 Msa0357050:CDS 50.0%
GTGGCTGTCCATATGCTAAG+GGG + chr3_1:37543993-37544012 Msa0357050:CDS 50.0%
TGGCTGTCCATATGCTAAGG+GGG + chr3_1:37543994-37544013 Msa0357050:CDS 50.0%
GGCATCAGGAAATGTAGCGA+CGG + chr3_1:37544015-37544034 Msa0357050:CDS 50.0%
ATGTCAGCTGGCGACTTCAT+CGG + chr3_1:37544100-37544119 Msa0357050:CDS 50.0%
GACTTCATCGGCAAGCAGTT+GGG + chr3_1:37544112-37544131 Msa0357050:CDS 50.0%
ACTTCATCGGCAAGCAGTTG+GGG + chr3_1:37544113-37544132 Msa0357050:CDS 50.0%
ATGGCAGTCTTTGAGCCAGA+GGG - chr3_1:37544142-37544161 None:intergenic 50.0%
AATGGCAGTCTTTGAGCCAG+AGG - chr3_1:37544143-37544162 None:intergenic 50.0%
!! AGTGACTCGGTTAAGGGCAA+TGG - chr3_1:37544161-37544180 None:intergenic 50.0%
!! CATCAGCAGTGACTCGGTTA+AGG - chr3_1:37544168-37544187 None:intergenic 50.0%
!! TGGAAGCATCAGCAGTGACT+CGG - chr3_1:37544174-37544193 None:intergenic 50.0%
! TTTGTCTGGTGGTGCAGCCT+TGG + chr3_1:37540275-37540294 Msa0357050:intron 55.0%
! TTGTCTGGTGGTGCAGCCTT+GGG + chr3_1:37540276-37540295 Msa0357050:intron 55.0%
! CAACTGAAATTGGCACCGGG+AGG - chr3_1:37540341-37540360 None:intergenic 55.0%
! CTCCCGGTGCCAATTTCAGT+TGG + chr3_1:37540339-37540358 Msa0357050:intron 55.0%
! AATCACACCGTCGACTAGCG+GGG - chr3_1:37540404-37540423 None:intergenic 55.0%
! CAATCACACCGTCGACTAGC+GGG - chr3_1:37540405-37540424 None:intergenic 55.0%
! CCAATCACACCGTCGACTAG+CGG - chr3_1:37540406-37540425 None:intergenic 55.0%
GCTGCCAAGCATGAGTACCA+TGG + chr3_1:37540679-37540698 Msa0357050:CDS 55.0%
CTCCCTGTGGTCATAGTCCT+TGG - chr3_1:37541064-37541083 None:intergenic 55.0%
CTGGCAATCTGATGCCTCTC+AGG - chr3_1:37542055-37542074 None:intergenic 55.0%
! TTTGAAGCTGCCGTTGCTGC+TGG + chr3_1:37542171-37542190 Msa0357050:CDS 55.0%
GGAGGAACTGGTCCTTCAAC+TGG - chr3_1:37542859-37542878 None:intergenic 55.0%
TGCATGGCTGCGGCAAATTC+AGG - chr3_1:37543730-37543749 None:intergenic 55.0%
CCTGATGCCCCCTTAGCATA+TGG - chr3_1:37544004-37544023 None:intergenic 55.0%
!! CCATATGCTAAGGGGGCATC+AGG + chr3_1:37544001-37544020 Msa0357050:CDS 55.0%
CGACTTCATCGGCAAGCAGT+TGG + chr3_1:37544111-37544130 Msa0357050:CDS 55.0%
TGGCAGTCTTTGAGCCAGAG+GGG - chr3_1:37544141-37544160 None:intergenic 55.0%
GTCTCAGGTGCGAATCCTCC+CGG + chr3_1:37540323-37540342 Msa0357050:intron 60.0%
! ATCACACCGTCGACTAGCGG+GGG - chr3_1:37540403-37540422 None:intergenic 60.0%
CCGCTAGTCGACGGTGTGAT+TGG + chr3_1:37540403-37540422 Msa0357050:intron 60.0%
!! CGACGGTGTGATTGGTCTCC+TGG + chr3_1:37540411-37540430 Msa0357050:intron 60.0%
GGCAGCTTGTCATGGCCAAG+TGG - chr3_1:37540665-37540684 None:intergenic 60.0%
ACAATTGGGGTAGGCACGCC+AGG + chr3_1:37542946-37542965 Msa0357050:CDS 60.0%
TTGCCGCAGCCATGCATCTC+AGG + chr3_1:37543734-37543753 Msa0357050:intron 60.0%
TGCCGCAGCCATGCATCTCA+GGG + chr3_1:37543735-37543754 Msa0357050:intron 60.0%
AGCCCTGAGATGCATGGCTG+CGG - chr3_1:37543740-37543759 None:intergenic 60.0%
TCAGGCAGCCCTGAGATGCA+TGG - chr3_1:37543746-37543765 None:intergenic 60.0%
GTGGTGCAGCCTTGGGACCT+TGG + chr3_1:37540283-37540302 Msa0357050:intron 65.0%
TTGGGGCCCCCGCTAGTCGA+CGG + chr3_1:37540394-37540413 Msa0357050:intron 70.0%
! AAGCAGTTGGGGCGCCCCTC+TGG + chr3_1:37544124-37544143 Msa0357050:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 37539486 37544654 37539486 ID=Msa0357050;Name=Msa0357050
chr3_1 mRNA 37539486 37544654 37539486 ID=Msa0357050-mRNA-1;Parent=Msa0357050;Name=Msa0357050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=233|1|1|1|0.87|0.77|9|453|433
chr3_1 exon 37539486 37539693 37539486 ID=Msa0357050-mRNA-1:exon:6854;Parent=Msa0357050-mRNA-1
chr3_1 exon 37540619 37540810 37540619 ID=Msa0357050-mRNA-1:exon:6855;Parent=Msa0357050-mRNA-1
chr3_1 exon 37540979 37541186 37540979 ID=Msa0357050-mRNA-1:exon:6856;Parent=Msa0357050-mRNA-1
chr3_1 exon 37541385 37541564 37541385 ID=Msa0357050-mRNA-1:exon:6857;Parent=Msa0357050-mRNA-1
chr3_1 exon 37542014 37542094 37542014 ID=Msa0357050-mRNA-1:exon:6858;Parent=Msa0357050-mRNA-1
chr3_1 exon 37542168 37542331 37542168 ID=Msa0357050-mRNA-1:exon:6859;Parent=Msa0357050-mRNA-1
chr3_1 exon 37542831 37542967 37542831 ID=Msa0357050-mRNA-1:exon:6860;Parent=Msa0357050-mRNA-1
chr3_1 exon 37543405 37543520 37543405 ID=Msa0357050-mRNA-1:exon:6861;Parent=Msa0357050-mRNA-1
chr3_1 exon 37543953 37544654 37543953 ID=Msa0357050-mRNA-1:exon:6862;Parent=Msa0357050-mRNA-1
chr3_1 five_prime_UTR 37539486 37539693 37539486 ID=Msa0357050-mRNA-1:five_prime_utr;Parent=Msa0357050-mRNA-1
chr3_1 five_prime_UTR 37540619 37540643 37540619 ID=Msa0357050-mRNA-1:five_prime_utr;Parent=Msa0357050-mRNA-1
chr3_1 CDS 37540644 37540810 37540644 ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1
chr3_1 CDS 37540979 37541186 37540979 ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1
chr3_1 CDS 37541385 37541564 37541385 ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1
chr3_1 CDS 37542014 37542094 37542014 ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1
chr3_1 CDS 37542168 37542331 37542168 ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1
chr3_1 CDS 37542831 37542967 37542831 ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1
chr3_1 CDS 37543405 37543520 37543405 ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1
chr3_1 CDS 37543953 37544201 37543953 ID=Msa0357050-mRNA-1:cds;Parent=Msa0357050-mRNA-1
chr3_1 three_prime_UTR 37544202 37544654 37544202 ID=Msa0357050-mRNA-1:three_prime_utr;Parent=Msa0357050-mRNA-1
Gene Sequence

>Msa0357050

ATGTCAAGTTTGGAGGAGCCACTTGGCCATGACAAGCTGCCAAGCATGAGTACCATGGACAGAGTTCAGAGGTTCTCATCTGGTTGTTGCCGTCCACAAGTAGATAATTTGGGTATGGGAAACTGCTTTATTGAAGGACGAAGTTGCAGCACATCTAATAGCTGCAATGAAGACAATGAAGATTACACAGCAGAAACATACCCTTGGAAAAGGCAAACAAGAGACATGTCCCGAGGTGACTCTTTCAGTCCAAGGACTATGACCACAGGGAGAAACACGATGAAATCTGGAATCGTTGAGAAACCACTTTGTACCTCAGATTACCAGTATAGTCAAAAGCGCAATAACAAAGACATGCAAGATATGGCATATAAGTTTATGAAAGGTATGCCTGAGTTTGTTAAGATAGTTGAAGTTGGACCAAGGGATGGATTACAAAATGAGAAGAACATTGTACCAACAGATGTAAAGATTGAATTGATTCATAGACTAGCATCTACTGGGTTATCTGTCATTGAGGCTACTAGTTTTGTATCTCCTAAATGGGTCCCACAGTTGGCTGATGCAAAAGATGTGATGCAAGCAGTTCATAACCTGAGAGGCATCAGATTGCCAGTTCTGACTCCTAATTTAAAGGGGTTTGAAGCTGCCGTTGCTGCTGGAGCTAGAGAAGTAGCTGTTTTTGCATCAGCTTCTGAATCTTTCTCAAAATCAAACATTAATTGTAGTATTGAAGAGAGTCTTTCCCGCTATCGAGCTGTCACTTGTGCTGCCAAAGAGCTCTCAATTCCAGTTCGAGGGTATGTATCATGCGTTGTTGGATGCCCAGTTGAAGGACCAGTTCCTCCATCAAAAGTAGCTTATGTAGCTAAAGCACTATATGATATGGGTTGTTTCGAAATCTCACTTGGTGACACAATTGGGGTAGGCACGCCAGGCACCGTAGTTCCAATGCTTTTGGCTGTAATGGCTGTTGTACCAACAGAAAAGCTTGCTGTCCACTTTCATGACACATACGGGCAATCCCTTCCAAATATTCTTGTCTCCCTCCAAATGGGAATAAGTGCTGTGGATTCTTCAGTTGCTGGTCTTGGTGGCTGTCCATATGCTAAGGGGGCATCAGGAAATGTAGCGACGGAAGATGTTGTGTACATGCTGAATGGACTTGGTATCAAAACCAACGTTGATATTGGAAAGCTCATGTCAGCTGGCGACTTCATCGGCAAGCAGTTGGGGCGCCCCTCTGGCTCAAAGACTGCCATTGCCCTTAACCGAGTCACTGCTGATGCTTCCAAGATATGA

Protein sequence

>Msa0357050

MSSLEEPLGHDKLPSMSTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCNEDNEDYTAETYPWKRQTRDMSRGDSFSPRTMTTGRNTMKSGIVEKPLCTSDYQYSQKRNNKDMQDMAYKFMKGMPEFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASTGLSVIEATSFVSPKWVPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAVAAGAREVAVFASASESFSKSNINCSIEESLSRYRAVTCAAKELSIPVRGYVSCVVGCPVEGPVPPSKVAYVAKALYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPTEKLAVHFHDTYGQSLPNILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTNVDIGKLMSAGDFIGKQLGRPSGSKTAIALNRVTADASKI*