Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449880 | XP_003599680.1 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 882 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449880 | sp|O81027|HMGCL_ARATH | 72.581 | 434 | 117 | 2 | 1 | 433 | 36 | 468 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449880 | G7IZR1 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 882 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0396640 | Msa0449880 | 0.823254 | 1.529136e-53 | -8.615850e-47 |
| Msa0403290 | Msa0449880 | 0.868694 | 5.397030e-66 | -8.615850e-47 |
| Msa0444170 | Msa0449880 | 0.827133 | 1.850877e-54 | -8.615850e-47 |
| Msa0449880 | Msa0491730 | 0.836501 | 9.018013e-57 | -8.615850e-47 |
| Msa0449880 | Msa0503040 | 0.946486 | 4.214002e-105 | -8.615850e-47 |
| Msa0449880 | Msa0575960 | 0.802400 | 5.712085e-49 | -8.615850e-47 |
| Msa0449880 | Msa0645880 | -0.812120 | 4.975311e-51 | -8.615850e-47 |
| Msa0449880 | Msa0685730 | -0.808295 | 3.322305e-50 | -8.615850e-47 |
| Msa0449880 | Msa1083360 | 0.803200 | 3.905355e-49 | -8.615850e-47 |
| Msa0449880 | Msa1085570 | 0.812491 | 4.128381e-51 | -8.615850e-47 |
| Msa0449880 | Msa1128110 | 0.804989 | 1.657127e-49 | -8.615850e-47 |
| Msa0449880 | Msa1434710 | 0.822268 | 2.594250e-53 | -8.615850e-47 |
| Msa0449880 | Msa1441220 | 0.819716 | 1.003395e-52 | -8.615850e-47 |
| Msa0264960 | Msa0449880 | 0.802449 | 5.580516e-49 | -8.615850e-47 |
| Msa0303010 | Msa0449880 | 0.804636 | 1.964406e-49 | -8.615850e-47 |
| Msa0350070 | Msa0449880 | 0.834602 | 2.726242e-56 | -8.615850e-47 |
| Msa0357050 | Msa0449880 | 0.937321 | 4.191820e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449880 | MtrunA17_Chr3g0093871 | 98.383 | 433 | 7 | 0 | 1 | 433 | 1 | 433 | 0.0 | 882 |
| Msa0449880 | MtrunA17_Chr7g0255931 | 72.699 | 326 | 88 | 1 | 109 | 433 | 77 | 402 | 1.96e-172 | 488 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449880 | AT2G26800.1 | 72.581 | 434 | 117 | 2 | 1 | 433 | 1 | 433 | 0.0 | 649 |
| Msa0449880 | AT2G26800.2 | 72.581 | 434 | 117 | 2 | 1 | 433 | 36 | 468 | 0.0 | 649 |
| Msa0449880 | AT2G26800.4 | 72.581 | 434 | 117 | 2 | 1 | 433 | 36 | 468 | 0.0 | 649 |
| Msa0449880 | AT2G26800.5 | 72.032 | 379 | 105 | 1 | 56 | 433 | 10 | 388 | 0.0 | 564 |
| Msa0449880 | AT2G26800.3 | 68.038 | 316 | 100 | 1 | 1 | 316 | 36 | 350 | 2.32e-155 | 444 |
Find 131 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGTTGCACCTTTAAATT+AGG | 0.211209 | 3_3:+34819342 | None:intergenic |
| AGTTCTGACTCCTAATTTAA+AGG | 0.233362 | 3_3:-34819352 | Msa0449880:intron |
| CACCGTAGTTCCAATGCTTT+TGG | 0.246522 | 3_3:-34818023 | Msa0449880:CDS |
| TGGAGGGAGACAAGAATATT+TGG | 0.260470 | 3_3:+34817932 | None:intergenic |
| AGCTAAAGCACTATATGATA+TGG | 0.269941 | 3_3:-34818529 | Msa0449880:CDS |
| AAGCAGTTGGGGCGCCCCTC+TGG | 0.273848 | 3_3:-34817285 | Msa0449880:CDS |
| GGGAGAAACACGATGAAATT+TGG | 0.278565 | 3_3:-34820333 | Msa0449880:CDS |
| TTTGAAGCTGCTGTTGCTGC+TGG | 0.278986 | 3_3:-34819254 | Msa0449880:CDS |
| CATGCAAGATATGGCATATA+AGG | 0.283069 | 3_3:-34820247 | Msa0449880:intron |
| ATCAAAACCAACGTTGATAT+TGG | 0.285460 | 3_3:-34817339 | Msa0449880:CDS |
| TTTACAGAATACCTTCAAAA+TGG | 0.293301 | 3_3:+34816862 | None:intergenic |
| CCACTTCACCATGTCAAGTT+TGG | 0.300052 | 3_3:-34820782 | Msa0449880:exon |
| CCGTCCACAAGTAGATAATT+TGG | 0.313604 | 3_3:-34820683 | Msa0449880:CDS |
| GACTTCATCGGCAAGCAGTT+GGG | 0.324564 | 3_3:-34817297 | Msa0449880:CDS |
| GGAGGAACTGGTCCTTCAAC+TGG | 0.330205 | 3_3:+34818570 | None:intergenic |
| AACTGGAATTGAGAGCTCTT+TGG | 0.334848 | 3_3:+34819121 | None:intergenic |
| CTCCCTGTGGTCATAGTCCT+TGG | 0.337045 | 3_3:+34820351 | None:intergenic |
| GATTCTTCAGTTGCTGGTCT+TGG | 0.351386 | 3_3:-34817438 | Msa0449880:CDS |
| GCTGTGGATTCTTCAGTTGC+TGG | 0.359338 | 3_3:-34817444 | Msa0449880:CDS |
| ATCTCACTTGGTGACACAAT+TGG | 0.361351 | 3_3:-34818495 | Msa0449880:CDS |
| TTTACGAAACCCTAGAAATT+GGG | 0.363277 | 3_3:+34821749 | None:intergenic |
| GAGAAGCTTGCATTTGCTAT+TGG | 0.363951 | 3_3:+34817028 | None:intergenic |
| TCTCACTTGGTGACACAATT+GGG | 0.372918 | 3_3:-34818494 | Msa0449880:CDS |
| TATACCTGTGGGACCCATTT+GGG | 0.388962 | 3_3:+34819869 | None:intergenic |
| TAACAAAGACATGCAAGATA+TGG | 0.395825 | 3_3:-34820256 | Msa0449880:CDS |
| CGTCCACAAGTAGATAATTT+GGG | 0.396400 | 3_3:-34820682 | Msa0449880:CDS |
| CATCAGCAGTGACTCGGTTA+AGG | 0.398712 | 3_3:+34817244 | None:intergenic |
| CTGGCAATCTGATGCCTCTC+AGG | 0.410598 | 3_3:+34819373 | None:intergenic |
| ATTCATAGACTAGCATCTAC+TGG | 0.414544 | 3_3:-34819926 | Msa0449880:CDS |
| ATATACCTGTGGGACCCATT+TGG | 0.423740 | 3_3:+34819868 | None:intergenic |
| CAAAATGCATACCCTCGAAC+TGG | 0.425699 | 3_3:+34819104 | None:intergenic |
| AATTCAATCTTTACATCTGT+TGG | 0.426921 | 3_3:+34819950 | None:intergenic |
| TGAAGAAAACGTTGAGGGAT+AGG | 0.427797 | 3_3:+34821723 | None:intergenic |
| CGACTTCATCGGCAAGCAGT+TGG | 0.429165 | 3_3:-34817298 | Msa0449880:CDS |
| AAATAAATGAATAAGTTAGT+TGG | 0.431657 | 3_3:+34821864 | None:intergenic |
| ATATAGATGTTATCATATCT+TGG | 0.438779 | 3_3:+34817218 | None:intergenic |
| TCTTCAGTTGCTGGTCTTGG+TGG | 0.441483 | 3_3:-34817435 | Msa0449880:CDS |
| ACAAGTAGATAATTTGGGTA+TGG | 0.441687 | 3_3:-34820677 | Msa0449880:CDS |
| TCCACTCACGTTGATGAGTT+AGG | 0.442451 | 3_3:-34817073 | Msa0449880:three_prime_UTR |
| GGTGGCTGTCCATATGCTAA+GGG | 0.446426 | 3_3:-34817417 | Msa0449880:CDS |
| TGGTGGCTGTCCATATGCTA+AGG | 0.451026 | 3_3:-34817418 | Msa0449880:CDS |
| TTAGTTGGTTGGTGAGAGGA+TGG | 0.470383 | 3_3:+34821879 | None:intergenic |
| ATCAGCAGTGACTCGGTTAA+GGG | 0.471542 | 3_3:+34817245 | None:intergenic |
| TTTGAAGGTATTCTGTAAAG+TGG | 0.472562 | 3_3:-34816858 | Msa0449880:three_prime_UTR |
| ATGGGAAACTGCTTTATTGA+AGG | 0.479991 | 3_3:-34820658 | Msa0449880:CDS |
| GCCATTACAGCCAAAAGCAT+TGG | 0.482879 | 3_3:+34818013 | None:intergenic |
| ACAATTGGGGTAGGCACGCC+AGG | 0.486021 | 3_3:-34818480 | Msa0449880:intron |
| AAGTTAGCTGGACACGACTA+AGG | 0.486476 | 3_3:+34816766 | None:intergenic |
| TTTGTTAAGATAGTTGAAGT+TGG | 0.487269 | 3_3:-34820010 | Msa0449880:CDS |
| TTTAAATTAGGAGTCAGAAC+TGG | 0.489900 | 3_3:+34819354 | None:intergenic |
| GCTAAAGCACTATATGATAT+GGG | 0.494567 | 3_3:-34818528 | Msa0449880:CDS |
| ATGATGTATAGTTAGCTATA+CGG | 0.495826 | 3_3:-34816952 | Msa0449880:three_prime_UTR |
| GAAGAAAACGTTGAGGGATA+GGG | 0.496510 | 3_3:+34821724 | None:intergenic |
| GAGCTCTCAATTCCAGTTCG+AGG | 0.500214 | 3_3:-34819116 | Msa0449880:CDS |
| TCATGCTTGGCAGCTTGTCA+TGG | 0.500596 | 3_3:+34820746 | None:intergenic |
| CAAGTAGATAATTTGGGTAT+GGG | 0.504928 | 3_3:-34820676 | Msa0449880:CDS |
| AGAGTTCAGAGGTTCTCATC+TGG | 0.505085 | 3_3:-34820712 | Msa0449880:CDS |
| CAGAAACATACCCTTGGAAA+AGG | 0.505637 | 3_3:-34820410 | Msa0449880:CDS |
| CTGTCCATGGTACTCATGCT+TGG | 0.511059 | 3_3:+34820733 | None:intergenic |
| ACTTCATCGGCAAGCAGTTG+GGG | 0.512566 | 3_3:-34817296 | Msa0449880:CDS |
| ATTGGAAAGCTCATGTCAGC+TGG | 0.513314 | 3_3:-34817321 | Msa0449880:CDS |
| ATTCCATTGGTTGAATCACC+TGG | 0.522248 | 3_3:+34817161 | None:intergenic |
| TCAACTATCTTAACAAACTC+AGG | 0.528412 | 3_3:+34820016 | None:intergenic |
| CTTCACCATGTCAAGTTTGG+AGG | 0.529375 | 3_3:-34820779 | Msa0449880:exon |
| AGCCAAAAGCATTGGAACTA+CGG | 0.530502 | 3_3:+34818021 | None:intergenic |
| CATATAGAATGATATTCCAT+TGG | 0.532273 | 3_3:+34817148 | None:intergenic |
| GGCAGCTTGTCATGGCCAAG+TGG | 0.534171 | 3_3:+34820754 | None:intergenic |
| ATCTCCCAAATGGGTCCCAC+AGG | 0.534715 | 3_3:-34819873 | Msa0449880:intron |
| GTCCACTTTCATGACACATA+CGG | 0.536770 | 3_3:-34817965 | Msa0449880:CDS |
| TCCACTTTCATGACACATAC+GGG | 0.541191 | 3_3:-34817964 | Msa0449880:CDS |
| AGAATTGAAGAAAACGTTGA+GGG | 0.546967 | 3_3:+34821718 | None:intergenic |
| GATGTTGTGTACATGCTGAA+TGG | 0.548740 | 3_3:-34817369 | Msa0449880:CDS |
| ACGAGTGACAGCTCGATAGC+GGG | 0.549034 | 3_3:+34819148 | None:intergenic |
| GTTGTTGGATGCCCAGTTGA+AGG | 0.549854 | 3_3:-34818582 | Msa0449880:CDS |
| TATCCAGGTGATTCAACCAA+TGG | 0.549950 | 3_3:-34817164 | Msa0449880:three_prime_UTR |
| AAATGAATAAGTTAGTTGGT+TGG | 0.550498 | 3_3:+34821868 | None:intergenic |
| TTACGAAACCCTAGAAATTG+GGG | 0.550632 | 3_3:+34821750 | None:intergenic |
| GTTGAAGTTGGACCAAGGGA+TGG | 0.550966 | 3_3:-34819998 | Msa0449880:CDS |
| TATTTGTTAACTTACTTGGA+GGG | 0.551242 | 3_3:+34817916 | None:intergenic |
| ATACCCAAATTATCTACTTG+TGG | 0.551302 | 3_3:+34820679 | None:intergenic |
| GTGTACATGCTGAATGGACT+TGG | 0.556574 | 3_3:-34817363 | Msa0449880:CDS |
| ATGTCAGCTGGCGACTTCAT+CGG | 0.556641 | 3_3:-34817309 | Msa0449880:CDS |
| GCCCGTATGTGTCATGAAAG+TGG | 0.558059 | 3_3:+34817963 | None:intergenic |
| TTCATAGACTAGCATCTACT+GGG | 0.564553 | 3_3:-34819925 | Msa0449880:CDS |
| AGTGACTCGGTTAAGGGCAA+TGG | 0.564612 | 3_3:+34817251 | None:intergenic |
| TACTGGGTTATCTGTCATTG+AGG | 0.564876 | 3_3:-34819909 | Msa0449880:CDS |
| TCAAGTTTGGAGGAGCCACT+TGG | 0.565206 | 3_3:-34820769 | Msa0449880:CDS |
| GGAGACAAGAATATTTGGAA+GGG | 0.565627 | 3_3:+34817937 | None:intergenic |
| GGGAGACAAGAATATTTGGA+AGG | 0.577919 | 3_3:+34817936 | None:intergenic |
| ATGGCAGTCTTTGAGCCAGA+GGG | 0.579520 | 3_3:+34817270 | None:intergenic |
| GGTTGTTTCGAAATCTCACT+TGG | 0.579694 | 3_3:-34818507 | Msa0449880:CDS |
| GATAGTTGAAGTTGGACCAA+GGG | 0.581744 | 3_3:-34820002 | Msa0449880:CDS |
| TGGACTGAAAGAGTCACCTC+GGG | 0.587158 | 3_3:+34820371 | None:intergenic |
| TGTGCAATGCAGTTTATGAA+AGG | 0.589993 | 3_3:-34820043 | Msa0449880:intron |
| GAGCTTTCCAATATCAACGT+TGG | 0.590179 | 3_3:+34817332 | None:intergenic |
| AGCTCTCAATTCCAGTTCGA+GGG | 0.594177 | 3_3:-34819115 | Msa0449880:intron |
| AAGAATTGAAGAAAACGTTG+AGG | 0.595942 | 3_3:+34821717 | None:intergenic |
| GAGGAACTGGTCCTTCAACT+GGG | 0.597731 | 3_3:+34818571 | None:intergenic |
| GTGGCTGTCCATATGCTAAG+GGG | 0.598484 | 3_3:-34817416 | Msa0449880:CDS |
| ACACAGCAGAAACATACCCT+TGG | 0.600138 | 3_3:-34820416 | Msa0449880:CDS |
| TGGAAGCATCAGCAGTGACT+CGG | 0.600270 | 3_3:+34817238 | None:intergenic |
| CCAAATTATCTACTTGTGGA+CGG | 0.600561 | 3_3:+34820683 | None:intergenic |
| CACGAGTGACAGCTCGATAG+CGG | 0.601591 | 3_3:+34819147 | None:intergenic |
| TTTCATCGTGTTTCTCCCTG+TGG | 0.602715 | 3_3:+34820338 | None:intergenic |
| CCAAACTTGACATGGTGAAG+TGG | 0.606059 | 3_3:+34820782 | None:intergenic |
| TGGCTCCTCCAAACTTGACA+TGG | 0.606063 | 3_3:+34820774 | None:intergenic |
| TAAGTTAGTTGGTTGGTGAG+AGG | 0.608734 | 3_3:+34821875 | None:intergenic |
| AATGGCAGTCTTTGAGCCAG+AGG | 0.609686 | 3_3:+34817269 | None:intergenic |
| TGGCTGTCCATATGCTAAGG+GGG | 0.610224 | 3_3:-34817415 | Msa0449880:CDS |
| ACAGAATACCTTCAAAATGG+AGG | 0.613881 | 3_3:+34816865 | None:intergenic |
| AGTCCAAGGACTATGACCAC+AGG | 0.615138 | 3_3:-34820354 | Msa0449880:CDS |
| AGGTATGTATCATGCGTTGT+TGG | 0.615911 | 3_3:-34818597 | Msa0449880:CDS |
| TCCTAACTCATCAACGTGAG+TGG | 0.618319 | 3_3:+34817072 | None:intergenic |
| CTTGGTGACACAATTGGGGT+AGG | 0.625438 | 3_3:-34818489 | Msa0449880:CDS |
| GAGGTGACTCTTTCAGTCCA+AGG | 0.626999 | 3_3:-34820368 | Msa0449880:CDS |
| GGCATCAGGAAATGTAGCGA+CGG | 0.627133 | 3_3:-34817394 | Msa0449880:CDS |
| ATAGATGGGAATAAGTGCTG+TGG | 0.633320 | 3_3:-34817460 | Msa0449880:intron |
| AGATAGTTGAAGTTGGACCA+AGG | 0.636448 | 3_3:-34820003 | Msa0449880:CDS |
| GAACCTCTGAACTCTGTCCA+TGG | 0.637112 | 3_3:+34820720 | None:intergenic |
| TTGGACTGAAAGAGTCACCT+CGG | 0.641749 | 3_3:+34820370 | None:intergenic |
| CTCACTTGGTGACACAATTG+GGG | 0.642342 | 3_3:-34818493 | Msa0449880:CDS |
| TTGACTATACTGGTAATCTG+AGG | 0.644486 | 3_3:+34820287 | None:intergenic |
| TACGAAACCCTAGAAATTGG+GGG | 0.648510 | 3_3:+34821751 | None:intergenic |
| TGGCAGTCTTTGAGCCAGAG+GGG | 0.660951 | 3_3:+34817271 | None:intergenic |
| GCTGCCAAGCATGAGTACCA+TGG | 0.664679 | 3_3:-34820737 | Msa0449880:CDS |
| ATACACAACTAAGTGCATGA+TGG | 0.666126 | 3_3:+34816973 | None:intergenic |
| GTCCAAGGACTATGACCACA+GGG | 0.671076 | 3_3:-34820353 | Msa0449880:CDS |
| TGGTAATCTGAGGTACAAAG+TGG | 0.671809 | 3_3:+34820297 | None:intergenic |
| CAAGCAGTTCATAACCTGAG+AGG | 0.688642 | 3_3:-34819387 | Msa0449880:CDS |
| GTACCATGGACAGAGTTCAG+AGG | 0.731970 | 3_3:-34820723 | Msa0449880:CDS |
| CAAACAAGAGACATGTCCCG+AGG | 0.735346 | 3_3:-34820387 | Msa0449880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATATATTTTTTAAT+TGG | + | chr3_3:34820283-34820302 | None:intergenic | 0.0% |
| !! | AAAACTATAACATTATATAT+TGG | + | chr3_3:34817047-34817066 | None:intergenic | 10.0% |
| !! | ATGCTATATATATATATAAT+TGG | + | chr3_3:34818177-34818196 | None:intergenic | 10.0% |
| !! | TCTATTAAATTATAATTCTT+TGG | - | chr3_3:34818476-34818495 | Msa0449880:intron | 10.0% |
| !!! | TATCTATATTTTACATTTAT+AGG | - | chr3_3:34819376-34819395 | Msa0449880:CDS | 10.0% |
| !!! | ATCTATATTTTACATTTATA+GGG | - | chr3_3:34819377-34819396 | Msa0449880:CDS | 10.0% |
| !!! | TTTCATTTATTTTTGTTTAT+TGG | - | chr3_3:34820771-34820790 | Msa0449880:CDS | 10.0% |
| !! | AAATAAATGAATAAGTTAGT+TGG | + | chr3_3:34816794-34816813 | None:intergenic | 15.0% |
| !! | AAGTTAAATAAATATGACAA+AGG | + | chr3_3:34818822-34818841 | None:intergenic | 15.0% |
| !!! | TGTAATCATATCTTTTATAA+TGG | + | chr3_3:34819121-34819140 | None:intergenic | 15.0% |
| !!! | TCTATATTTTACATTTATAG+GGG | - | chr3_3:34819378-34819397 | Msa0449880:CDS | 15.0% |
| !! | TATCAAATGGTAAAAAAAAT+TGG | + | chr3_3:34819667-34819686 | None:intergenic | 15.0% |
| !!! | TTATTATTTTAATTGTGATC+AGG | - | chr3_3:34820609-34820628 | Msa0449880:intron | 15.0% |
| !!! | TCATATATTTTCTAGAATAT+AGG | - | chr3_3:34821076-34821095 | Msa0449880:intron | 15.0% |
| !!! | TAAATTTTTATCTTTTTGCT+AGG | - | chr3_3:34821827-34821846 | Msa0449880:five_prime_UTR | 15.0% |
| !! | AAAATTGTAATTCATTCCTT+TGG | + | chr3_3:34817195-34817214 | None:intergenic | 20.0% |
| !!! | GAATGAATTACAATTTTTGA+AGG | - | chr3_3:34817198-34817217 | Msa0449880:three_prime_UTR | 20.0% |
| !! | TAAAAACTACATTATACTGT+TGG | + | chr3_3:34817243-34817262 | None:intergenic | 20.0% |
| !!! | ACAGTATAATGTAGTTTTTA+TGG | - | chr3_3:34817243-34817262 | Msa0449880:CDS | 20.0% |
| !!! | ACTAGTTTTTGCTTATATTT+GGG | + | chr3_3:34817300-34817319 | None:intergenic | 20.0% |
| !! | ATTTAATTACTCTTCTATGA+TGG | - | chr3_3:34817446-34817465 | Msa0449880:CDS | 20.0% |
| !! | ATATATAATTGGCAGATAAT+AGG | + | chr3_3:34818166-34818185 | None:intergenic | 20.0% |
| !!! | GTGATTTTATCATATTTCTT+TGG | - | chr3_3:34818560-34818579 | Msa0449880:CDS | 20.0% |
| !! | TATCAATCCCATAAATTAAA+AGG | - | chr3_3:34818901-34818920 | Msa0449880:intron | 20.0% |
| !!! | ACCATTACCTTTTAATTTAT+GGG | + | chr3_3:34818911-34818930 | None:intergenic | 20.0% |
| !!! | TACCATTACCTTTTAATTTA+TGG | + | chr3_3:34818912-34818931 | None:intergenic | 20.0% |
| !!! | TACCATTTGATATTTTCTAT+AGG | - | chr3_3:34819675-34819694 | Msa0449880:intron | 20.0% |
| !! | ATCCTATAGAAAATATCAAA+TGG | + | chr3_3:34819680-34819699 | None:intergenic | 20.0% |
| !!! | TGTGGATATTGTAAATTTTA+CGG | - | chr3_3:34819977-34819996 | Msa0449880:CDS | 20.0% |
| !!! | TTTTAGATTAAAGTTGTACT+TGG | - | chr3_3:34820229-34820248 | Msa0449880:intron | 20.0% |
| !!! | AAATCTTTGAAAATACGAAA+TGG | + | chr3_3:34820372-34820391 | None:intergenic | 20.0% |
| !! | TAATTGAAAACAGAAATCAA+AGG | - | chr3_3:34820432-34820451 | Msa0449880:CDS | 20.0% |
| !! | AATTGAAAACAGAAATCAAA+GGG | - | chr3_3:34820433-34820452 | Msa0449880:CDS | 20.0% |
| !!! | TGATTTGTTTAATCTTAATC+AGG | + | chr3_3:34820990-34821009 | None:intergenic | 20.0% |
| !! | ATATAGATGTTATCATATCT+TGG | + | chr3_3:34821440-34821459 | None:intergenic | 20.0% |
| !! | TAGCATAAAAATATATATCC+AGG | - | chr3_3:34821476-34821495 | Msa0449880:intron | 20.0% |
| ! | AAATGAATAAGTTAGTTGGT+TGG | + | chr3_3:34816790-34816809 | None:intergenic | 25.0% |
| ! | ATAAGAACGCGTAAAAATAA+AGG | + | chr3_3:34816844-34816863 | None:intergenic | 25.0% |
| !! | GTCTAATTTTCATTCGTTTA+AGG | - | chr3_3:34816962-34816981 | Msa0449880:three_prime_UTR | 25.0% |
| ! | CTTCAAATTACAGCAAAATA+AGG | + | chr3_3:34817008-34817027 | None:intergenic | 25.0% |
| !!! | CTTATTTTGCTGTAATTTGA+AGG | - | chr3_3:34817006-34817025 | Msa0449880:three_prime_UTR | 25.0% |
| ! | AATATGCATTATATGCTTTG+GGG | + | chr3_3:34817269-34817288 | None:intergenic | 25.0% |
| ! | CAATATGCATTATATGCTTT+GGG | + | chr3_3:34817270-34817289 | None:intergenic | 25.0% |
| ! | TCAATATGCATTATATGCTT+TGG | + | chr3_3:34817271-34817290 | None:intergenic | 25.0% |
| !!! | GACTAGTTTTTGCTTATATT+TGG | + | chr3_3:34817301-34817320 | None:intergenic | 25.0% |
| ! | GTCAAAAAAGTTTATGCATT+TGG | - | chr3_3:34817318-34817337 | Msa0449880:CDS | 25.0% |
| ! | TCTCAAATATAAGCAAAAGT+TGG | + | chr3_3:34817374-34817393 | None:intergenic | 25.0% |
| !! | CTTTTGCTTATATTTGAGAA+CGG | - | chr3_3:34817375-34817394 | Msa0449880:CDS | 25.0% |
| ! | TAGATTTCACCATATAGAAT+AGG | - | chr3_3:34817724-34817743 | Msa0449880:intron | 25.0% |
| ! | TAATAAGTGCCTATTCTATA+TGG | + | chr3_3:34817736-34817755 | None:intergenic | 25.0% |
| ! | TTAGTACAAGTCAATACTTA+TGG | - | chr3_3:34818069-34818088 | Msa0449880:intron | 25.0% |
| ! | ATCATATTTCTTTGGTTAGT+TGG | - | chr3_3:34818568-34818587 | Msa0449880:CDS | 25.0% |
| ! | TTTGTTAAGATAGTTGAAGT+TGG | - | chr3_3:34818645-34818664 | Msa0449880:intron | 25.0% |
| ! | AATTCAATCTTTACATCTGT+TGG | + | chr3_3:34818708-34818727 | None:intergenic | 25.0% |
| ! | GATATTATGAATGATTGTTG+TGG | - | chr3_3:34818842-34818861 | Msa0449880:intron | 25.0% |
| ! | TCCCATAAATTAAAAGGTAA+TGG | - | chr3_3:34818907-34818926 | Msa0449880:intron | 25.0% |
| ! | TTGAGCACAAATAAAAAGTA+GGG | + | chr3_3:34818991-34819010 | None:intergenic | 25.0% |
| ! | AATATAGATAAGACATCTGA+AGG | + | chr3_3:34819366-34819385 | None:intergenic | 25.0% |
| ! | ATTAAAGTGGAGATATTTGA+TGG | + | chr3_3:34819598-34819617 | None:intergenic | 25.0% |
| ! | ACTTGCAAGTTATATTAAAG+TGG | + | chr3_3:34819611-34819630 | None:intergenic | 25.0% |
| ! | CATAGAATTTGATGTCTTAT+GGG | + | chr3_3:34819811-34819830 | None:intergenic | 25.0% |
| ! | TCATAGAATTTGATGTCTTA+TGG | + | chr3_3:34819812-34819831 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTTGAGATGATT+TGG | - | chr3_3:34819866-34819885 | Msa0449880:intron | 25.0% |
| ! | GAGTTTCAAAAATACAAAGA+AGG | + | chr3_3:34819904-34819923 | None:intergenic | 25.0% |
| !!! | TGTATTTTTGAAACTCAATC+AGG | - | chr3_3:34819908-34819927 | Msa0449880:CDS | 25.0% |
| ! | ATTTACAATATCCACACAAA+GGG | + | chr3_3:34819973-34819992 | None:intergenic | 25.0% |
| ! | AATTTACAATATCCACACAA+AGG | + | chr3_3:34819974-34819993 | None:intergenic | 25.0% |
| ! | CAATTAGTCGTATAGAAAAA+TGG | + | chr3_3:34820418-34820437 | None:intergenic | 25.0% |
| ! | TCAAACATTTAATTGAGACT+AGG | - | chr3_3:34820508-34820527 | Msa0449880:intron | 25.0% |
| !! | TATTTGTTAACTTACTTGGA+GGG | + | chr3_3:34820742-34820761 | None:intergenic | 25.0% |
| !! | AAGCTATTTGTTAACTTACT+TGG | + | chr3_3:34820746-34820765 | None:intergenic | 25.0% |
| ! | ACACATTTCATATATAGAAG+AGG | + | chr3_3:34820821-34820840 | None:intergenic | 25.0% |
| !! | TTGATAGTTCGTTCATTAAT+TGG | + | chr3_3:34820854-34820873 | None:intergenic | 25.0% |
| ! | TATCAAACGACTATAATTAG+TGG | - | chr3_3:34820868-34820887 | Msa0449880:intron | 25.0% |
| ! | AATACCATGTACATTAGATT+TGG | - | chr3_3:34820910-34820929 | Msa0449880:intron | 25.0% |
| ! | AAATCCAAATCTAATGTACA+TGG | + | chr3_3:34820917-34820936 | None:intergenic | 25.0% |
| ! | ATATAGGTATCTGTATAACT+AGG | - | chr3_3:34821092-34821111 | Msa0449880:intron | 25.0% |
| ! | TTTGCATGCATATAAATAGA+TGG | - | chr3_3:34821180-34821199 | Msa0449880:intron | 25.0% |
| ! | TTGCATGCATATAAATAGAT+GGG | - | chr3_3:34821181-34821200 | Msa0449880:intron | 25.0% |
| ! | CATATAGAATGATATTCCAT+TGG | + | chr3_3:34821510-34821529 | None:intergenic | 25.0% |
| !! | TTTTGTTCTTCTTCTATAAC+TGG | + | chr3_3:34821560-34821579 | None:intergenic | 25.0% |
| ! | ATGATGTATAGTTAGCTATA+CGG | - | chr3_3:34821703-34821722 | Msa0449880:five_prime_UTR | 25.0% |
| !! | ATTATTTACCTCCATTTTGA+AGG | - | chr3_3:34821782-34821801 | Msa0449880:five_prime_UTR | 25.0% |
| ! | TTTACAGAATACCTTCAAAA+TGG | + | chr3_3:34821796-34821815 | None:intergenic | 25.0% |
| ! | AAAACACTACCGAAAAAAAA+AGG | + | chr3_3:34821857-34821876 | None:intergenic | 25.0% |
| AAATTGGGGGAATTTGAATA+TGG | + | chr3_3:34816894-34816913 | None:intergenic | 30.0% | |
| TTTACGAAACCCTAGAAATT+GGG | + | chr3_3:34816909-34816928 | None:intergenic | 30.0% | |
| ! | TTTTACGAAACCCTAGAAAT+TGG | + | chr3_3:34816910-34816929 | None:intergenic | 30.0% |
| AGAATTGAAGAAAACGTTGA+GGG | + | chr3_3:34816940-34816959 | None:intergenic | 30.0% | |
| AAGAATTGAAGAAAACGTTG+AGG | + | chr3_3:34816941-34816960 | None:intergenic | 30.0% | |
| !! | ATTTTGCTGTAATTTGAAGG+TGG | - | chr3_3:34817009-34817028 | Msa0449880:three_prime_UTR | 30.0% |
| ! | CATGTCAATTTGTCACATTT+TGG | - | chr3_3:34817110-34817129 | Msa0449880:three_prime_UTR | 30.0% |
| ! | CAATTGTGATTAGTTGAATG+AGG | - | chr3_3:34817136-34817155 | Msa0449880:three_prime_UTR | 30.0% |
| TCTTTGACATGTTAAACCAA+AGG | - | chr3_3:34817176-34817195 | Msa0449880:three_prime_UTR | 30.0% | |
| GCATATAATGCATATTGATC+CGG | - | chr3_3:34817273-34817292 | Msa0449880:CDS | 30.0% | |
| !! | TTTTTGCTTATATTTGGGAC+CGG | + | chr3_3:34817295-34817314 | None:intergenic | 30.0% |
| ! | CAAAAGTTGGTCAAAGAAAA+TGG | + | chr3_3:34817361-34817380 | None:intergenic | 30.0% |
| TACTCTTCTATGATGGTTAA+TGG | - | chr3_3:34817453-34817472 | Msa0449880:CDS | 30.0% | |
| ! | AGTTTTGCTCTGCATTTAAT+TGG | - | chr3_3:34817635-34817654 | Msa0449880:intron | 30.0% |
| ! | GTTTTGCTCTGCATTTAATT+GGG | - | chr3_3:34817636-34817655 | Msa0449880:intron | 30.0% |
| ! | TTTTGCTCTGCATTTAATTG+GGG | - | chr3_3:34817637-34817656 | Msa0449880:intron | 30.0% |
| CTAAATACAACTACAAGCAA+AGG | + | chr3_3:34817707-34817726 | None:intergenic | 30.0% | |
| ATACCCAAATTATCTACTTG+TGG | + | chr3_3:34817979-34817998 | None:intergenic | 30.0% | |
| ACAAGTAGATAATTTGGGTA+TGG | - | chr3_3:34817978-34817997 | Msa0449880:CDS | 30.0% | |
| CAAGTAGATAATTTGGGTAT+GGG | - | chr3_3:34817979-34817998 | Msa0449880:CDS | 30.0% | |
| CAGGAGTTAATGTAAAGTAA+AGG | + | chr3_3:34818129-34818148 | None:intergenic | 30.0% | |
| TAACAAAGACATGCAAGATA+TGG | - | chr3_3:34818399-34818418 | Msa0449880:intron | 30.0% | |
| AAGTTTAAATTCACTGCAGT+TGG | - | chr3_3:34818538-34818557 | Msa0449880:CDS | 30.0% | |
| TCAACTATCTTAACAAACTC+AGG | + | chr3_3:34818642-34818661 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTATCTCCCAAAT+GGG | - | chr3_3:34818773-34818792 | Msa0449880:intron | 30.0% |
| GCGTTATAATATATACCTGT+GGG | + | chr3_3:34818800-34818819 | None:intergenic | 30.0% | |
| ! | AAAAGTAGGGGAAATCATTT+TGG | + | chr3_3:34818978-34818997 | None:intergenic | 30.0% |
| TGAGCACAAATAAAAAGTAG+GGG | + | chr3_3:34818990-34819009 | None:intergenic | 30.0% | |
| GTTGAGCACAAATAAAAAGT+AGG | + | chr3_3:34818992-34819011 | None:intergenic | 30.0% | |
| ! | TGTTCGGATTGAATGATTTT+GGG | + | chr3_3:34819060-34819079 | None:intergenic | 30.0% |
| CACATCACAGTAGAAATAAT+TGG | + | chr3_3:34819185-34819204 | None:intergenic | 30.0% | |
| TTTAAATTAGGAGTCAGAAC+TGG | + | chr3_3:34819304-34819323 | None:intergenic | 30.0% | |
| ! | AGTTCTGACTCCTAATTTAA+AGG | - | chr3_3:34819303-34819322 | Msa0449880:intron | 30.0% |
| GATAGTTGCACCTTTAAATT+AGG | + | chr3_3:34819316-34819335 | None:intergenic | 30.0% | |
| ! | TGATGGATGCTTAGAATAAT+GGG | + | chr3_3:34819581-34819600 | None:intergenic | 30.0% |
| ! | TTGATGGATGCTTAGAATAA+TGG | + | chr3_3:34819582-34819601 | None:intergenic | 30.0% |
| ! | AAGTTCATCTGAAATTGAAC+TGG | - | chr3_3:34819760-34819779 | Msa0449880:intron | 30.0% |
| TCTGTTGTACTTATTCCAAT+CGG | - | chr3_3:34820016-34820035 | Msa0449880:CDS | 30.0% | |
| !! | AATTTAAATACAGCACCGAT+TGG | + | chr3_3:34820034-34820053 | None:intergenic | 30.0% |
| !! | ATCGGTGCTGTATTTAAATT+TGG | - | chr3_3:34820034-34820053 | Msa0449880:CDS | 30.0% |
| GTGCTGTATTTAAATTTGGT+AGG | - | chr3_3:34820038-34820057 | Msa0449880:intron | 30.0% | |
| ! | AGCTAAAGCACTATATGATA+TGG | - | chr3_3:34820126-34820145 | Msa0449880:intron | 30.0% |
| ! | GCTAAAGCACTATATGATAT+GGG | - | chr3_3:34820127-34820146 | Msa0449880:intron | 30.0% |
| CAGAAATCAAAGGGAAAATA+AGG | - | chr3_3:34820442-34820461 | Msa0449880:intron | 30.0% | |
| TAATTGAGACTAGGAAGAAT+TGG | - | chr3_3:34820517-34820536 | Msa0449880:intron | 30.0% | |
| AATTGAGACTAGGAAGAATT+GGG | - | chr3_3:34820518-34820537 | Msa0449880:intron | 30.0% | |
| ! | TCAGAAAGAGCATGTATATT+CGG | + | chr3_3:34820585-34820604 | None:intergenic | 30.0% |
| ! | CTATTTGTTAACTTACTTGG+AGG | + | chr3_3:34820743-34820762 | None:intergenic | 30.0% |
| ! | AGATTTGGATTTTCTGCAAT+TGG | - | chr3_3:34820925-34820944 | Msa0449880:intron | 30.0% |
| TATATGATCCAGATTCCTTA+CGG | + | chr3_3:34821063-34821082 | None:intergenic | 30.0% | |
| ! | AACTAGGTTTAACTTTAAGC+TGG | - | chr3_3:34821108-34821127 | Msa0449880:intron | 30.0% |
| ! | ACTAGGTTTAACTTTAAGCT+GGG | - | chr3_3:34821109-34821128 | Msa0449880:intron | 30.0% |
| ! | CAGTTATTAATGGACATTCT+TGG | - | chr3_3:34821157-34821176 | Msa0449880:intron | 30.0% |
| ATCAAAACCAACGTTGATAT+TGG | - | chr3_3:34821316-34821335 | Msa0449880:intron | 30.0% | |
| !! | TTTGAAGGTATTCTGTAAAG+TGG | - | chr3_3:34821797-34821816 | Msa0449880:five_prime_UTR | 30.0% |
| !!! | CTAGGTTAGCCTTTTTTTTT+CGG | - | chr3_3:34821845-34821864 | Msa0449880:five_prime_UTR | 30.0% |
| TTCAAATTCCCCCAATTTCT+AGG | - | chr3_3:34816896-34816915 | Msa0449880:three_prime_UTR | 35.0% | |
| TCAAATTCCCCCAATTTCTA+GGG | - | chr3_3:34816897-34816916 | Msa0449880:three_prime_UTR | 35.0% | |
| TTACGAAACCCTAGAAATTG+GGG | + | chr3_3:34816908-34816927 | None:intergenic | 35.0% | |
| TGCTTATATTTGAGAACGGA+AGG | - | chr3_3:34817379-34817398 | Msa0449880:CDS | 35.0% | |
| CTTCTATGATGGTTAATGGA+AGG | - | chr3_3:34817457-34817476 | Msa0449880:CDS | 35.0% | |
| ! | AGAGTATTAAAATGCAGCCT+TGG | - | chr3_3:34817535-34817554 | Msa0449880:intron | 35.0% |
| GAGTATTAAAATGCAGCCTT+GGG | - | chr3_3:34817536-34817555 | Msa0449880:intron | 35.0% | |
| GTATATATTTCCCTACAACC+TGG | - | chr3_3:34817767-34817786 | Msa0449880:intron | 35.0% | |
| ATGATTTCTACCATTTCACC+AGG | + | chr3_3:34817788-34817807 | None:intergenic | 35.0% | |
| CCAAATTATCTACTTGTGGA+CGG | + | chr3_3:34817975-34817994 | None:intergenic | 35.0% | |
| CGTCCACAAGTAGATAATTT+GGG | - | chr3_3:34817973-34817992 | Msa0449880:CDS | 35.0% | |
| ! | ATGGGAAACTGCTTTATTGA+AGG | - | chr3_3:34817997-34818016 | Msa0449880:CDS | 35.0% |
| ATAGGTCAGTAATACATGAC+AGG | + | chr3_3:34818148-34818167 | None:intergenic | 35.0% | |
| TTGACTATACTGGTAATCTG+AGG | + | chr3_3:34818371-34818390 | None:intergenic | 35.0% | |
| !! | TATTGCGCTTTTGACTATAC+TGG | + | chr3_3:34818381-34818400 | None:intergenic | 35.0% |
| CATGCAAGATATGGCATATA+AGG | - | chr3_3:34818408-34818427 | Msa0449880:intron | 35.0% | |
| ATGGCATATAAGGTATGCAA+TGG | - | chr3_3:34818418-34818437 | Msa0449880:intron | 35.0% | |
| TGTGCAATGCAGTTTATGAA+AGG | - | chr3_3:34818612-34818631 | Msa0449880:intron | 35.0% | |
| ATTCATAGACTAGCATCTAC+TGG | - | chr3_3:34818729-34818748 | Msa0449880:intron | 35.0% | |
| TTCATAGACTAGCATCTACT+GGG | - | chr3_3:34818730-34818749 | Msa0449880:intron | 35.0% | |
| !!! | CTAGTTTTGTATCTCCCAAA+TGG | - | chr3_3:34818772-34818791 | Msa0449880:intron | 35.0% |
| GGCGTTATAATATATACCTG+TGG | + | chr3_3:34818801-34818820 | None:intergenic | 35.0% | |
| !!! | TTGAATGATTTTGGGGTGAA+TGG | + | chr3_3:34819052-34819071 | None:intergenic | 35.0% |
| ! | GTTCGGATTGAATGATTTTG+GGG | + | chr3_3:34819059-34819078 | None:intergenic | 35.0% |
| ! | CTGTTCGGATTGAATGATTT+TGG | + | chr3_3:34819061-34819080 | None:intergenic | 35.0% |
| AAATCGAATGACATTGAAGC+AGG | + | chr3_3:34819215-34819234 | None:intergenic | 35.0% | |
| CATTCGATTTATGTCTCAGT+TGG | - | chr3_3:34819225-34819244 | Msa0449880:CDS | 35.0% | |
| GATGGATGCTTAGAATAATG+GGG | + | chr3_3:34819580-34819599 | None:intergenic | 35.0% | |
| ! | TATAACTTGCAAGTTGCAAG+TGG | - | chr3_3:34819617-34819636 | Msa0449880:intron | 35.0% |
| ! | ATAACTTGCAAGTTGCAAGT+GGG | - | chr3_3:34819618-34819637 | Msa0449880:intron | 35.0% |
| CGAATATAGAGAAGATTGCA+GGG | + | chr3_3:34819715-34819734 | None:intergenic | 35.0% | |
| CCTGCAATCTTCTCTATATT+CGG | - | chr3_3:34819713-34819732 | Msa0449880:intron | 35.0% | |
| ATGTCTTATGGGATAGCATT+AGG | + | chr3_3:34819800-34819819 | None:intergenic | 35.0% | |
| ACAGATATAGATGTTGAGAC+TGG | + | chr3_3:34819846-34819865 | None:intergenic | 35.0% | |
| TGTAACTGTTAAGACCTTGA+CGG | + | chr3_3:34819939-34819958 | None:intergenic | 35.0% | |
| !!! | ACATAAGCTACTTTTGATGG+AGG | + | chr3_3:34820106-34820125 | None:intergenic | 35.0% |
| !!! | GCTACATAAGCTACTTTTGA+TGG | + | chr3_3:34820109-34820128 | None:intergenic | 35.0% |
| AAGTTTGAGCTTAATTGGGT+TGG | + | chr3_3:34820306-34820325 | None:intergenic | 35.0% | |
| AACCCAATTAAGCTCAAACT+TGG | - | chr3_3:34820305-34820324 | Msa0449880:CDS | 35.0% | |
| ACCCAATTAAGCTCAAACTT+GGG | - | chr3_3:34820306-34820325 | Msa0449880:CDS | 35.0% | |
| ACCCAAGTTTGAGCTTAATT+GGG | + | chr3_3:34820310-34820329 | None:intergenic | 35.0% | |
| AACCCAAGTTTGAGCTTAAT+TGG | + | chr3_3:34820311-34820330 | None:intergenic | 35.0% | |
| ATTGAGACTAGGAAGAATTG+GGG | - | chr3_3:34820519-34820538 | Msa0449880:intron | 35.0% | |
| CATGTATATTCGGGATTAAG+AGG | + | chr3_3:34820575-34820594 | None:intergenic | 35.0% | |
| ! | CAGAAAGAGCATGTATATTC+GGG | + | chr3_3:34820584-34820603 | None:intergenic | 35.0% |
| GGAGACAAGAATATTTGGAA+GGG | + | chr3_3:34820721-34820740 | None:intergenic | 35.0% | |
| ! | TGGGTCTGCATTTTATGATT+CGG | - | chr3_3:34821128-34821147 | Msa0449880:intron | 35.0% |
| TCGGTAGTCTCAGTTATTAA+TGG | - | chr3_3:34821147-34821166 | Msa0449880:intron | 35.0% | |
| ATACACAACTAAGTGCATGA+TGG | + | chr3_3:34821685-34821704 | None:intergenic | 35.0% | |
| ACAGAATACCTTCAAAATGG+AGG | + | chr3_3:34821793-34821812 | None:intergenic | 35.0% | |
| !!! | TTTCGGTAGTGTTTTTTGCT+AGG | - | chr3_3:34821862-34821881 | Msa0449880:five_prime_UTR | 35.0% |
| !! | TAAGTTAGTTGGTTGGTGAG+AGG | + | chr3_3:34816783-34816802 | None:intergenic | 40.0% |
| TACGAAACCCTAGAAATTGG+GGG | + | chr3_3:34816907-34816926 | None:intergenic | 40.0% | |
| GAAGAAAACGTTGAGGGATA+GGG | + | chr3_3:34816934-34816953 | None:intergenic | 40.0% | |
| TGAAGAAAACGTTGAGGGAT+AGG | + | chr3_3:34816935-34816954 | None:intergenic | 40.0% | |
| !! | ATGGACTAGCCAACTGAAAT+TGG | + | chr3_3:34817611-34817630 | None:intergenic | 40.0% |
| ATGCAGAGCAAAACTCTGTA+TGG | + | chr3_3:34817630-34817649 | None:intergenic | 40.0% | |
| TACCATTTCACCAGGTTGTA+GGG | + | chr3_3:34817780-34817799 | None:intergenic | 40.0% | |
| CCGTCCACAAGTAGATAATT+TGG | - | chr3_3:34817972-34817991 | Msa0449880:CDS | 40.0% | |
| TCTTCATTGTCTTCACTGCA+CGG | + | chr3_3:34818217-34818236 | None:intergenic | 40.0% | |
| CAGAAACATACCCTTGGAAA+AGG | - | chr3_3:34818245-34818264 | Msa0449880:intron | 40.0% | |
| !! | CTCTTGTTTGCCTTTTCCAA+GGG | + | chr3_3:34818258-34818277 | None:intergenic | 40.0% |
| !! | TCTCTTGTTTGCCTTTTCCA+AGG | + | chr3_3:34818259-34818278 | None:intergenic | 40.0% |
| GGGAGAAACACGATGAAATT+TGG | - | chr3_3:34818322-34818341 | Msa0449880:intron | 40.0% | |
| ! | TGGTAATCTGAGGTACAAAG+TGG | + | chr3_3:34818361-34818380 | None:intergenic | 40.0% |
| AGATAGTTGAAGTTGGACCA+AGG | - | chr3_3:34818652-34818671 | Msa0449880:intron | 40.0% | |
| GATAGTTGAAGTTGGACCAA+GGG | - | chr3_3:34818653-34818672 | Msa0449880:intron | 40.0% | |
| ! | TCATTTTGCAATCCATCCCT+TGG | + | chr3_3:34818672-34818691 | None:intergenic | 40.0% |
| TACTGGGTTATCTGTCATTG+AGG | - | chr3_3:34818746-34818765 | Msa0449880:intron | 40.0% | |
| GGATCTGTTGGGAAGAAAAA+TGG | + | chr3_3:34819031-34819050 | None:intergenic | 40.0% | |
| GTAAATGCGTAAGGTCTGTT+CGG | + | chr3_3:34819076-34819095 | None:intergenic | 40.0% | |
| AACTGTGCAGTAAATGCGTA+AGG | + | chr3_3:34819085-34819104 | None:intergenic | 40.0% | |
| AACTGGAATTGAGAGCTCTT+TGG | + | chr3_3:34819537-34819556 | None:intergenic | 40.0% | |
| CCGAATATAGAGAAGATTGC+AGG | + | chr3_3:34819716-34819735 | None:intergenic | 40.0% | |
| GCAATCTTCTCTATATTCGG+TGG | - | chr3_3:34819716-34819735 | Msa0449880:intron | 40.0% | |
| !!! | GTTTTGAGATGATTTGGCAC+TGG | - | chr3_3:34819872-34819891 | Msa0449880:intron | 40.0% |
| AGGTATGTATCATGCGTTGT+TGG | - | chr3_3:34820058-34820077 | Msa0449880:intron | 40.0% | |
| ! | GGTTGTTTCGAAATCTCACT+TGG | - | chr3_3:34820148-34820167 | Msa0449880:intron | 40.0% |
| ! | ATCTCACTTGGTGACACAAT+TGG | - | chr3_3:34820160-34820179 | Msa0449880:intron | 40.0% |
| ! | TCTCACTTGGTGACACAATT+GGG | - | chr3_3:34820161-34820180 | Msa0449880:intron | 40.0% |
| AAGCAGTCTAACTCATTACC+TGG | + | chr3_3:34820196-34820215 | None:intergenic | 40.0% | |
| !! | AGCCAAAAGCATTGGAACTA+CGG | + | chr3_3:34820637-34820656 | None:intergenic | 40.0% |
| !! | TCCAATGCTTTTGGCTGTAA+TGG | - | chr3_3:34820641-34820660 | Msa0449880:CDS | 40.0% |
| GTCCACTTTCATGACACATA+CGG | - | chr3_3:34820690-34820709 | Msa0449880:CDS | 40.0% | |
| TCCACTTTCATGACACATAC+GGG | - | chr3_3:34820691-34820710 | Msa0449880:CDS | 40.0% | |
| GGGAGACAAGAATATTTGGA+AGG | + | chr3_3:34820722-34820741 | None:intergenic | 40.0% | |
| TGGAGGGAGACAAGAATATT+TGG | + | chr3_3:34820726-34820745 | None:intergenic | 40.0% | |
| CTGCTAGAGATACATGACTA+TGG | - | chr3_3:34821018-34821037 | Msa0449880:intron | 40.0% | |
| TACATGACTATGGCAAACTC+AGG | - | chr3_3:34821028-34821047 | Msa0449880:intron | 40.0% | |
| !! | TTTTCTAGCCGTAAGGAATC+TGG | - | chr3_3:34821052-34821071 | Msa0449880:intron | 40.0% |
| ! | ATAGATGGGAATAAGTGCTG+TGG | - | chr3_3:34821195-34821214 | Msa0449880:intron | 40.0% |
| GATGTTGTGTACATGCTGAA+TGG | - | chr3_3:34821286-34821305 | Msa0449880:intron | 40.0% | |
| GAGCTTTCCAATATCAACGT+TGG | + | chr3_3:34821326-34821345 | None:intergenic | 40.0% | |
| TATCCAGGTGATTCAACCAA+TGG | - | chr3_3:34821491-34821510 | Msa0449880:intron | 40.0% | |
| ! | ATTCCATTGGTTGAATCACC+TGG | + | chr3_3:34821497-34821516 | None:intergenic | 40.0% |
| !! | GAGAAGCTTGCATTTGCTAT+TGG | + | chr3_3:34821630-34821649 | None:intergenic | 40.0% |
| !! | TTAGTTGGTTGGTGAGAGGA+TGG | + | chr3_3:34816779-34816798 | None:intergenic | 45.0% |
| !! | GAGTATGTCTCAGCTTGCTA+TGG | - | chr3_3:34817401-34817420 | Msa0449880:CDS | 45.0% |
| !! | ATGTCTCAGCTTGCTATGGA+TGG | - | chr3_3:34817405-34817424 | Msa0449880:CDS | 45.0% |
| !! | TGTCTCAGCTTGCTATGGAT+GGG | - | chr3_3:34817406-34817425 | Msa0449880:CDS | 45.0% |
| ! | TGCTATGGATGGGCAAGTTT+TGG | - | chr3_3:34817416-34817435 | Msa0449880:CDS | 45.0% |
| ! | CTTGAGAGAAGTACACTCCA+AGG | + | chr3_3:34817563-34817582 | None:intergenic | 45.0% |
| CTTGGAGTGTACTTCTCTCA+AGG | - | chr3_3:34817561-34817580 | Msa0449880:intron | 45.0% | |
| TAGCCAACTGAAATTGGCAC+CGG | + | chr3_3:34817605-34817624 | None:intergenic | 45.0% | |
| !! | GATTGGTCTCCTGGATTAGT+CGG | - | chr3_3:34817680-34817699 | Msa0449880:intron | 45.0% |
| TTCCCTACAACCTGGTGAAA+TGG | - | chr3_3:34817775-34817794 | Msa0449880:intron | 45.0% | |
| CTACCATTTCACCAGGTTGT+AGG | + | chr3_3:34817781-34817800 | None:intergenic | 45.0% | |
| GTGGATGAGAGAAACAAAGC+TGG | + | chr3_3:34817857-34817876 | None:intergenic | 45.0% | |
| CCAAACTTGACATGGTGAAG+TGG | + | chr3_3:34817876-34817895 | None:intergenic | 45.0% | |
| CCACTTCACCATGTCAAGTT+TGG | - | chr3_3:34817873-34817892 | Msa0449880:intron | 45.0% | |
| CTTCACCATGTCAAGTTTGG+AGG | - | chr3_3:34817876-34817895 | Msa0449880:intron | 45.0% | |
| AGAGTTCAGAGGTTCTCATC+TGG | - | chr3_3:34817943-34817962 | Msa0449880:CDS | 45.0% | |
| ACACAGCAGAAACATACCCT+TGG | - | chr3_3:34818239-34818258 | Msa0449880:intron | 45.0% | |
| TTGGACTGAAAGAGTCACCT+CGG | + | chr3_3:34818288-34818307 | None:intergenic | 45.0% | |
| TTTCATCGTGTTTCTCCCTG+TGG | + | chr3_3:34818320-34818339 | None:intergenic | 45.0% | |
| GCAGCAGTACTTTCTGTTCA+AGG | - | chr3_3:34818440-34818459 | Msa0449880:intron | 45.0% | |
| TATACCTGTGGGACCCATTT+GGG | + | chr3_3:34818789-34818808 | None:intergenic | 45.0% | |
| ATATACCTGTGGGACCCATT+TGG | + | chr3_3:34818790-34818809 | None:intergenic | 45.0% | |
| TTGGGGTGAATGGATCTGTT+GGG | + | chr3_3:34819042-34819061 | None:intergenic | 45.0% | |
| ! | TTTGGGGTGAATGGATCTGT+TGG | + | chr3_3:34819043-34819062 | None:intergenic | 45.0% |
| CAAGCAGTTCATAACCTGAG+AGG | - | chr3_3:34819268-34819287 | Msa0449880:intron | 45.0% | |
| AGCTCTCAATTCCAGTTCGA+GGG | - | chr3_3:34819540-34819559 | Msa0449880:intron | 45.0% | |
| CAAAATGCATACCCTCGAAC+TGG | + | chr3_3:34819554-34819573 | None:intergenic | 45.0% | |
| CATGTGAAAGTCCCTTTGTG+TGG | - | chr3_3:34819959-34819978 | Msa0449880:CDS | 45.0% | |
| !!! | GCTACTTTTGATGGAGGAAC+TGG | + | chr3_3:34820100-34820119 | None:intergenic | 45.0% |
| ! | CTCACTTGGTGACACAATTG+GGG | - | chr3_3:34820162-34820181 | Msa0449880:intron | 45.0% |
| ! | CACCGTAGTTCCAATGCTTT+TGG | - | chr3_3:34820632-34820651 | Msa0449880:CDS | 45.0% |
| ! | GCCATTACAGCCAAAAGCAT+TGG | + | chr3_3:34820645-34820664 | None:intergenic | 45.0% |
| ! | TGGACAGCAAGCTTTTCTGT+TGG | + | chr3_3:34820675-34820694 | None:intergenic | 45.0% |
| !! | CTCAGGATTTTCTAGCCGTA+AGG | - | chr3_3:34821045-34821064 | Msa0449880:intron | 45.0% |
| ! | GATTCTTCAGTTGCTGGTCT+TGG | - | chr3_3:34821217-34821236 | Msa0449880:intron | 45.0% |
| ! | GTGTACATGCTGAATGGACT+TGG | - | chr3_3:34821292-34821311 | Msa0449880:intron | 45.0% |
| ATTGGAAAGCTCATGTCAGC+TGG | - | chr3_3:34821334-34821353 | Msa0449880:intron | 45.0% | |
| !! | ATCAGCAGTGACTCGGTTAA+GGG | + | chr3_3:34821413-34821432 | None:intergenic | 45.0% |
| ! | TCCACTCACGTTGATGAGTT+AGG | - | chr3_3:34821582-34821601 | Msa0449880:intron | 45.0% |
| TCCTAACTCATCAACGTGAG+TGG | + | chr3_3:34821586-34821605 | None:intergenic | 45.0% | |
| AAAATGCAGCCTTGGGACCT+TGG | - | chr3_3:34817543-34817562 | Msa0449880:intron | 50.0% | |
| AAGTACACTCCAAGGTCCCA+AGG | + | chr3_3:34817555-34817574 | None:intergenic | 50.0% | |
| AGCCAACTGAAATTGGCACC+GGG | + | chr3_3:34817604-34817623 | None:intergenic | 50.0% | |
| AGCAAAGGACCGACTAATCC+AGG | + | chr3_3:34817692-34817711 | None:intergenic | 50.0% | |
| TGGCTCCTCCAAACTTGACA+TGG | + | chr3_3:34817884-34817903 | None:intergenic | 50.0% | |
| TCAAGTTTGGAGGAGCCACT+TGG | - | chr3_3:34817886-34817905 | Msa0449880:intron | 50.0% | |
| TCATGCTTGGCAGCTTGTCA+TGG | + | chr3_3:34817912-34817931 | None:intergenic | 50.0% | |
| CTGTCCATGGTACTCATGCT+TGG | + | chr3_3:34817925-34817944 | None:intergenic | 50.0% | |
| GTACCATGGACAGAGTTCAG+AGG | - | chr3_3:34817932-34817951 | Msa0449880:CDS | 50.0% | |
| GAACCTCTGAACTCTGTCCA+TGG | + | chr3_3:34817938-34817957 | None:intergenic | 50.0% | |
| CAAACAAGAGACATGTCCCG+AGG | - | chr3_3:34818268-34818287 | Msa0449880:intron | 50.0% | |
| TGGACTGAAAGAGTCACCTC+GGG | + | chr3_3:34818287-34818306 | None:intergenic | 50.0% | |
| GAGGTGACTCTTTCAGTCCA+AGG | - | chr3_3:34818287-34818306 | Msa0449880:intron | 50.0% | |
| AGTCCAAGGACTATGACCAC+AGG | - | chr3_3:34818301-34818320 | Msa0449880:intron | 50.0% | |
| GTCCAAGGACTATGACCACA+GGG | - | chr3_3:34818302-34818321 | Msa0449880:intron | 50.0% | |
| GTTGAAGTTGGACCAAGGGA+TGG | - | chr3_3:34818657-34818676 | Msa0449880:intron | 50.0% | |
| ! | TTTGAAGCTGCTGTTGCTGC+TGG | - | chr3_3:34819401-34819420 | Msa0449880:CDS | 50.0% |
| GAGCTCTCAATTCCAGTTCG+AGG | - | chr3_3:34819539-34819558 | Msa0449880:intron | 50.0% | |
| TCAATCAGGTCAAGCCGTCA+AGG | - | chr3_3:34819922-34819941 | Msa0449880:CDS | 50.0% | |
| GTTGTTGGATGCCCAGTTGA+AGG | - | chr3_3:34820073-34820092 | Msa0449880:intron | 50.0% | |
| GAGGAACTGGTCCTTCAACT+GGG | + | chr3_3:34820087-34820106 | None:intergenic | 50.0% | |
| ! | CTTGGTGACACAATTGGGGT+AGG | - | chr3_3:34820166-34820185 | Msa0449880:intron | 50.0% |
| GCCCGTATGTGTCATGAAAG+TGG | + | chr3_3:34820695-34820714 | None:intergenic | 50.0% | |
| GCTGTGGATTCTTCAGTTGC+TGG | - | chr3_3:34821211-34821230 | Msa0449880:intron | 50.0% | |
| !! | TCTTCAGTTGCTGGTCTTGG+TGG | - | chr3_3:34821220-34821239 | Msa0449880:intron | 50.0% |
| TGGTGGCTGTCCATATGCTA+AGG | - | chr3_3:34821237-34821256 | Msa0449880:intron | 50.0% | |
| GGTGGCTGTCCATATGCTAA+GGG | - | chr3_3:34821238-34821257 | Msa0449880:intron | 50.0% | |
| GTGGCTGTCCATATGCTAAG+GGG | - | chr3_3:34821239-34821258 | Msa0449880:intron | 50.0% | |
| TGGCTGTCCATATGCTAAGG+GGG | - | chr3_3:34821240-34821259 | Msa0449880:intron | 50.0% | |
| ATGTCAGCTGGCGACTTCAT+CGG | - | chr3_3:34821346-34821365 | Msa0449880:intron | 50.0% | |
| GACTTCATCGGCAAGCAGTT+GGG | - | chr3_3:34821358-34821377 | Msa0449880:intron | 50.0% | |
| ACTTCATCGGCAAGCAGTTG+GGG | - | chr3_3:34821359-34821378 | Msa0449880:intron | 50.0% | |
| ATGGCAGTCTTTGAGCCAGA+GGG | + | chr3_3:34821388-34821407 | None:intergenic | 50.0% | |
| AATGGCAGTCTTTGAGCCAG+AGG | + | chr3_3:34821389-34821408 | None:intergenic | 50.0% | |
| !! | AGTGACTCGGTTAAGGGCAA+TGG | + | chr3_3:34821407-34821426 | None:intergenic | 50.0% |
| !! | CATCAGCAGTGACTCGGTTA+AGG | + | chr3_3:34821414-34821433 | None:intergenic | 50.0% |
| !! | TGGAAGCATCAGCAGTGACT+CGG | + | chr3_3:34821420-34821439 | None:intergenic | 50.0% |
| GTCTCAAGTGCGAATCCTCC+CGG | - | chr3_3:34817583-34817602 | Msa0449880:intron | 55.0% | |
| ! | CAACTGAAATTGGCACCGGG+AGG | + | chr3_3:34817601-34817620 | None:intergenic | 55.0% |
| ! | CTCCCGGTGCCAATTTCAGT+TGG | - | chr3_3:34817599-34817618 | Msa0449880:intron | 55.0% |
| ! | AATCACACCGTCGACTAGCG+GGG | + | chr3_3:34817664-34817683 | None:intergenic | 55.0% |
| ! | CAATCACACCGTCGACTAGC+GGG | + | chr3_3:34817665-34817684 | None:intergenic | 55.0% |
| ! | CCAATCACACCGTCGACTAG+CGG | + | chr3_3:34817666-34817685 | None:intergenic | 55.0% |
| GCTGCCAAGCATGAGTACCA+TGG | - | chr3_3:34817918-34817937 | Msa0449880:intron | 55.0% | |
| CTCCCTGTGGTCATAGTCCT+TGG | + | chr3_3:34818307-34818326 | None:intergenic | 55.0% | |
| ATCTCCCAAATGGGTCCCAC+AGG | - | chr3_3:34818782-34818801 | Msa0449880:intron | 55.0% | |
| CTGGCAATCTGATGCCTCTC+AGG | + | chr3_3:34819285-34819304 | None:intergenic | 55.0% | |
| ACGAGTGACAGCTCGATAGC+GGG | + | chr3_3:34819510-34819529 | None:intergenic | 55.0% | |
| CACGAGTGACAGCTCGATAG+CGG | + | chr3_3:34819511-34819530 | None:intergenic | 55.0% | |
| GGAGGAACTGGTCCTTCAAC+TGG | + | chr3_3:34820088-34820107 | None:intergenic | 55.0% | |
| TGCATGGCTGCGGCAAATTC+AGG | + | chr3_3:34820956-34820975 | None:intergenic | 55.0% | |
| CCTGATGCCCCCTTAGCATA+TGG | + | chr3_3:34821250-34821269 | None:intergenic | 55.0% | |
| !! | CCATATGCTAAGGGGGCATC+AGG | - | chr3_3:34821247-34821266 | Msa0449880:intron | 55.0% |
| CGACTTCATCGGCAAGCAGT+TGG | - | chr3_3:34821357-34821376 | Msa0449880:intron | 55.0% | |
| TGGCAGTCTTTGAGCCAGAG+GGG | + | chr3_3:34821387-34821406 | None:intergenic | 55.0% | |
| ! | ATCACACCGTCGACTAGCGG+GGG | + | chr3_3:34817663-34817682 | None:intergenic | 60.0% |
| CCGCTAGTCGACGGTGTGAT+TGG | - | chr3_3:34817663-34817682 | Msa0449880:intron | 60.0% | |
| !! | CGACGGTGTGATTGGTCTCC+TGG | - | chr3_3:34817671-34817690 | Msa0449880:intron | 60.0% |
| GGCAGCTTGTCATGGCCAAG+TGG | + | chr3_3:34817904-34817923 | None:intergenic | 60.0% | |
| ACAATTGGGGTAGGCACGCC+AGG | - | chr3_3:34820175-34820194 | Msa0449880:intron | 60.0% | |
| TTGCCGCAGCCATGCATCTC+AGG | - | chr3_3:34820960-34820979 | Msa0449880:intron | 60.0% | |
| TGCCGCAGCCATGCATCTCA+GGG | - | chr3_3:34820961-34820980 | Msa0449880:intron | 60.0% | |
| AGCCCTGAGATGCATGGCTG+CGG | + | chr3_3:34820966-34820985 | None:intergenic | 60.0% | |
| TCAGGCAGCCCTGAGATGCA+TGG | + | chr3_3:34820972-34820991 | None:intergenic | 60.0% | |
| TTGGGGCCCCCGCTAGTCGA+CGG | - | chr3_3:34817654-34817673 | Msa0449880:intron | 70.0% | |
| ! | AAGCAGTTGGGGCGCCCCTC+TGG | - | chr3_3:34821370-34821389 | Msa0449880:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 34816776 | 34821901 | 34816776 | ID=Msa0449880;Name=Msa0449880 |
| chr3_3 | mRNA | 34816776 | 34821901 | 34816776 | ID=Msa0449880-mRNA-1;Parent=Msa0449880;Name=Msa0449880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=233|1|1|1|0.75|0.66|9|454|433 |
| chr3_3 | exon | 34816776 | 34817478 | 34816776 | ID=Msa0449880-mRNA-1:exon:6198;Parent=Msa0449880-mRNA-1 |
| chr3_3 | exon | 34817931 | 34818046 | 34817931 | ID=Msa0449880-mRNA-1:exon:6197;Parent=Msa0449880-mRNA-1 |
| chr3_3 | exon | 34818481 | 34818617 | 34818481 | ID=Msa0449880-mRNA-1:exon:6196;Parent=Msa0449880-mRNA-1 |
| chr3_3 | exon | 34819116 | 34819279 | 34819116 | ID=Msa0449880-mRNA-1:exon:6195;Parent=Msa0449880-mRNA-1 |
| chr3_3 | exon | 34819353 | 34819433 | 34819353 | ID=Msa0449880-mRNA-1:exon:6194;Parent=Msa0449880-mRNA-1 |
| chr3_3 | exon | 34819874 | 34820053 | 34819874 | ID=Msa0449880-mRNA-1:exon:6193;Parent=Msa0449880-mRNA-1 |
| chr3_3 | exon | 34820248 | 34820455 | 34820248 | ID=Msa0449880-mRNA-1:exon:6192;Parent=Msa0449880-mRNA-1 |
| chr3_3 | exon | 34820628 | 34820819 | 34820628 | ID=Msa0449880-mRNA-1:exon:6191;Parent=Msa0449880-mRNA-1 |
| chr3_3 | exon | 34821694 | 34821901 | 34821694 | ID=Msa0449880-mRNA-1:exon:6190;Parent=Msa0449880-mRNA-1 |
| chr3_3 | five_prime_UTR | 34821694 | 34821901 | 34821694 | ID=Msa0449880-mRNA-1:five_prime_utr;Parent=Msa0449880-mRNA-1 |
| chr3_3 | five_prime_UTR | 34820795 | 34820819 | 34820795 | ID=Msa0449880-mRNA-1:five_prime_utr;Parent=Msa0449880-mRNA-1 |
| chr3_3 | CDS | 34820628 | 34820794 | 34820628 | ID=Msa0449880-mRNA-1:cds;Parent=Msa0449880-mRNA-1 |
| chr3_3 | CDS | 34820248 | 34820455 | 34820248 | ID=Msa0449880-mRNA-1:cds;Parent=Msa0449880-mRNA-1 |
| chr3_3 | CDS | 34819874 | 34820053 | 34819874 | ID=Msa0449880-mRNA-1:cds;Parent=Msa0449880-mRNA-1 |
| chr3_3 | CDS | 34819353 | 34819433 | 34819353 | ID=Msa0449880-mRNA-1:cds;Parent=Msa0449880-mRNA-1 |
| chr3_3 | CDS | 34819116 | 34819279 | 34819116 | ID=Msa0449880-mRNA-1:cds;Parent=Msa0449880-mRNA-1 |
| chr3_3 | CDS | 34818481 | 34818617 | 34818481 | ID=Msa0449880-mRNA-1:cds;Parent=Msa0449880-mRNA-1 |
| chr3_3 | CDS | 34817931 | 34818046 | 34817931 | ID=Msa0449880-mRNA-1:cds;Parent=Msa0449880-mRNA-1 |
| chr3_3 | CDS | 34817230 | 34817478 | 34817230 | ID=Msa0449880-mRNA-1:cds;Parent=Msa0449880-mRNA-1 |
| chr3_3 | three_prime_UTR | 34816776 | 34817229 | 34816776 | ID=Msa0449880-mRNA-1:three_prime_utr;Parent=Msa0449880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
