AlfalfaGEDB | Msa0414590

M. sativa cultivar zhongmu-4 / Msa0414590

KEGG: K12153|K13401
GO: -
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414590	XP_013460458.1	90.717	474	34	1	1	464	66	539	0.0	901

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414590	sp\|Q6J541\|C79D3_LOTJA	65.612	474	147	6	1	462	61	530	0.0	639

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414590	A0A072UYH9	90.717	474	34	1	1	464	66	539	0.0	901

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0211680	Msa0414590	0.814856	1.245178e-51	-8.615850e-47
Msa0414590	Msa0506000	0.880834	3.960306e-70	-8.615850e-47
Msa0414590	Msa0584130	0.828179	1.037968e-54	-8.615850e-47
Msa0414590	Msa0784520	0.800735	1.253743e-48	-8.615850e-47
Msa0414590	Msa0818030	0.803644	3.159791e-49	-8.615850e-47
Msa0414590	Msa0858360	0.843551	1.306777e-58	-8.615850e-47
Msa0414590	Msa0865390	0.850769	1.370237e-60	-8.615850e-47
Msa0414590	Msa1006250	0.802444	5.592822e-49	-8.615850e-47
Msa0414590	Msa1027240	0.824621	7.309173e-54	-8.615850e-47
Msa0414590	Msa1288000	0.825373	4.856893e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414590	MtrunA17_Chr3g0107611	90.717	474	34	1	1	464	66	539	0.0	901
Msa0414590	MtrunA17_Chr3g0107541	66.737	472	141	4	1	462	66	531	0.0	660
Msa0414590	MtrunA17_Chr8g0370651	59.534	472	178	3	1	462	60	528	0.0	587
Msa0414590	MtrunA17_Chr8g0370641	58.686	472	182	3	1	462	56	524	0.0	582
Msa0414590	MtrunA17_Chr3g0107561	67.433	261	70	3	1	251	61	316	1.35e-125	368
Msa0414590	MtrunA17_Chr3g0105751	63.636	264	81	3	1	254	63	321	2.16e-119	354
Msa0414590	MtrunA17_Chr3g0107551	66.827	208	68	1	255	462	4	210	3.03e-97	291
Msa0414590	MtrunA17_Chr3g0107581	87.500	152	16	1	15	166	1	149	5.72e-97	288
Msa0414590	MtrunA17_Chr3g0105761	61.836	207	76	2	257	463	1	204	1.78e-89	271
Msa0414590	MtrunA17_Chr7g0254641	31.878	458	287	7	22	462	71	520	2.30e-77	250

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0414590	AT2G22330.1	52.220	473	208	6	1	462	74	539	4.47e-179	512
Msa0414590	AT2G22330.2	52.220	473	208	6	1	462	97	562	7.53e-179	513
Msa0414590	AT4G39950.1	52.220	473	208	6	1	462	72	537	3.90e-178	510
Msa0414590	AT4G39950.2	52.220	473	208	6	1	462	112	577	3.62e-177	509
Msa0414590	AT5G05260.2	50.424	472	217	6	4	462	60	527	2.01e-172	495
Msa0414590	AT5G05260.1	50.433	462	200	6	4	462	60	495	9.82e-165	474
Msa0414590	AT1G58260.1	45.188	478	241	6	1	462	53	525	6.35e-147	430
Msa0414590	AT1G79370.1	45.361	485	240	5	1	462	56	538	1.35e-141	417
Msa0414590	AT5G35917.1	44.937	474	199	9	4	462	62	488	1.47e-140	412
Msa0414590	AT1G16410.1	37.448	478	278	7	1	462	61	533	2.03e-112	342

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Find 113 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTACATGGCTACCTTT+TGG	0.320315	3_2:+60140946	None:intergenic
AAAGACTGGTGCTGATGCTG+AGG	0.604053	3_2:-60141449	Msa0414590:CDS
AAATATTTGAAAATTTAATA+AGG	0.254976	3_2:-60140581	Msa0414590:three_prime_UTR
AAGAATTCAAGGGCAATGGT+GGG	0.637514	3_2:+60141994	None:intergenic
AAGTCAAGTCCTCTCAAGAA+TGG	0.507060	3_2:+60141541	None:intergenic
AAGTTCATATCATTTAGTAC+GGG	0.569361	3_2:-60140808	Msa0414590:CDS
AATAGAAGGTACTTTGGAGA+TGG	0.526196	3_2:-60141664	Msa0414590:CDS
AATGATATGAACTTCAAATC+TGG	0.414952	3_2:+60140817	None:intergenic
AATGGTGATAGATACCTAGG+AGG	0.726993	3_2:-60140658	Msa0414590:CDS
ACAACCGCCGTTACACCTTT+TGG	0.280637	3_2:-60141898	Msa0414590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGGTGGATACATAAAATGA+TGG	-	chr3_2:60140447-60140466	Msa0414590:three_prime_UTR	30.0%
CATTCTTTCTCAAGAATTCA+AGG	+	chr3_2:60140549-60140568	None:intergenic	30.0%
TGAATATTAGGATTGTTGCA+AGG	-	chr3_2:60140806-60140825	Msa0414590:CDS	30.0%
TTGAGAGGAGAATTGAAAAA+TGG	-	chr3_2:60141046-60141065	Msa0414590:CDS	30.0%
CAAACCATTATTGACATTAG+AGG	-	chr3_2:60141143-60141162	Msa0414590:CDS	30.0%
ATCAAGGTTAAAATTCTTGC+AGG	-	chr3_2:60141294-60141313	Msa0414590:intron	30.0%
GCTAATTACATGATTCCAAA+AGG	-	chr3_2:60141568-60141587	Msa0414590:CDS	30.0%
GAACGCCATTTAAAAAATGA+TGG	-	chr3_2:60141667-60141686	Msa0414590:CDS	30.0%
TAATAACATCACAGTCATTG+TGG	+	chr3_2:60141779-60141798	None:intergenic	30.0%
ACAATGACTGTGATGTTATT+AGG	-	chr3_2:60141778-60141797	Msa0414590:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	60140424	60142127	60140424	ID=Msa0414590;Name=Msa0414590
chr3_2	mRNA	60140424	60142127	60140424	ID=Msa0414590-mRNA-1;Parent=Msa0414590;Name=Msa0414590-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|1\|0.5\|1\|1\|1\|2\|179\|464
chr3_2	exon	60140424	60141235	60140424	ID=Msa0414590-mRNA-1:exon:12537;Parent=Msa0414590-mRNA-1
chr3_2	exon	60141366	60142127	60141366	ID=Msa0414590-mRNA-1:exon:12536;Parent=Msa0414590-mRNA-1
chr3_2	CDS	60141366	60142127	60141366	ID=Msa0414590-mRNA-1:cds;Parent=Msa0414590-mRNA-1
chr3_2	CDS	60140603	60141235	60140603	ID=Msa0414590-mRNA-1:cds;Parent=Msa0414590-mRNA-1
chr3_2	three_prime_UTR	60140424	60140602	60140424	ID=Msa0414590-mRNA-1:three_prime_utr;Parent=Msa0414590-mRNA-1

Gene Sequence

>Msa0414590

ATGCTTGCAAACAAACCTGCAACTAGGTGGATACATAAAATGATGGAAGAAATGAATACCGAAATAGCGTGTATCCGCCTAGGAAATGTCCATGTTATTCCTGTTACCTGTCCCACCATTGCCCTTGAATTCTTGAGAAAGAATGATGCTACTTTTGCATCAAGACCTATATCCATGTCCACTGATGTCATCAGCAAAGGATTCTTGACAACCGCCGTTACACCTTTTGGAGAACAATGGAAGAAAATGAAGAAAATATTTGACAATGAATTGTTCTCCCCTCACAAGCATCAATGGCTCACTAACAAAAGGAATGAAGAAGCTGATAACCTAATGTTTTATGTGTACAACAAATGCAAAAATGTGAATGATAATGGTCTTGTGAATATTAGGATTGTTGCAAGGCATTATTGTTGTAATTTGATGAGGAAATTGGTTTTTAATAGAAGGTACTTTGGAGATGGAAGGAATGATGGTGGTCCTGGTTTGGAGGAAGTTGAACATGTAGATGCTATTTTCACATTGCTTAGATATGTTTTTGCCTTTTGTGTTTCTGATTATATGCCATTCTTGAGAGGACTTGACTTTGATGGTCATGAGAGAAAGGTAAAGGATGCTATCATTGAGAGGAGAATTGAAAAATGGAAAGATGGATCAAAGACTGGTGCTGATGCTGAGGACTTACTTGATATTCTAATCTCCCTTAAAGATGCCAACAACAAACCATTATTGACATTAGAGGAAATAAAGGCTCAAGCTCTAGAACTTGTGCTAGGTGGCGTGGACAATCCATCACATGCAGCTGAATTTGCAATAGCAGAAATGATAAATCAGCCAGATTTACTTCAACGAGCCACTGAGGAATTGGATAATGTCGTAGGAAAACAACGACTGGTCCAAGAATCGGATATTCAAAACCTCAACTTTGTGAAAGCTTGTGCAAAAGAAGCTTTTCGTCTTCATCCGATTACAATTTTTAATCCTCCGCATGTTGCTATGGACAACATAATTGTTGCTAATTACATGATTCCAAAAGGTAGCCATGTACTTTTAAGCAAACAAGGACTCGGACGAAATCCAAAAGTTTGGAATGAACCTCACAAGTTTAAACCAGAACGCCATTTAAAAAATGATGGGTCTATGGTAGTTTTTTTGGAACCAGATTTGAAGTTCATATCATTTAGTACGGGAAGGAGTGGTTGCCCCGGAATTGTGCTTGGAACCACAATGACTGTGATGTTATTAGGTAGGTTGCTCCATGGCTTCAATTGGAGTGGTCCTCCTAATGCATCAACCATTGAACTTCTCAAGTATTCCAATGGTGATAGATACCTAGGAGGCCCACTTGTCGCAATAGCAAAGCCAAGATTGGCAGCAGAATTATATCATCAATAA

Protein sequence

>Msa0414590

MLANKPATRWIHKMMEEMNTEIACIRLGNVHVIPVTCPTIALEFLRKNDATFASRPISMSTDVISKGFLTTAVTPFGEQWKKMKKIFDNELFSPHKHQWLTNKRNEEADNLMFYVYNKCKNVNDNGLVNIRIVARHYCCNLMRKLVFNRRYFGDGRNDGGPGLEEVEHVDAIFTLLRYVFAFCVSDYMPFLRGLDFDGHERKVKDAIIERRIEKWKDGSKTGADAEDLLDILISLKDANNKPLLTLEEIKAQALELVLGGVDNPSHAAEFAIAEMINQPDLLQRATEELDNVVGKQRLVQESDIQNLNFVKACAKEAFRLHPITIFNPPHVAMDNIIVANYMIPKGSHVLLSKQGLGRNPKVWNEPHKFKPERHLKNDGSMVVFLEPDLKFISFSTGRSGCPGIVLGTTMTVMLLGRLLHGFNWSGPPNASTIELLKYSNGDRYLGGPLVAIAKPRLAAELYHQ*