Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423510 | XP_003601902.1 | 99.074 | 324 | 3 | 0 | 1 | 324 | 1 | 324 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423510 | G7J360 | 99.074 | 324 | 3 | 0 | 1 | 324 | 1 | 324 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422700 | Msa0423510 | 0.929229 | 9.380494e-93 | -8.615850e-47 |
| Msa0423510 | Msa0455760 | 0.815894 | 7.316909e-52 | -8.615850e-47 |
| Msa0423510 | Msa0468890 | 0.835550 | 1.571891e-56 | -8.615850e-47 |
| Msa0423510 | Msa0545050 | 0.802962 | 4.373544e-49 | -8.615850e-47 |
| Msa0423510 | Msa0641130 | 0.805447 | 1.329159e-49 | -8.615850e-47 |
| Msa0423510 | Msa1063400 | 0.812684 | 3.744947e-51 | -8.615850e-47 |
| Msa0423510 | Msa1188180 | 0.803090 | 4.114623e-49 | -8.615850e-47 |
| Msa0423510 | Msa1238330 | 0.803789 | 2.947811e-49 | -8.615850e-47 |
| Msa0423510 | Msa1369920 | -0.813171 | 2.929756e-51 | -8.615850e-47 |
| Msa0423510 | Msa1454430 | 0.804317 | 2.289373e-49 | -8.615850e-47 |
| Msa0271550 | Msa0423510 | 0.818759 | 1.657486e-52 | -8.615850e-47 |
| Msa0308460 | Msa0423510 | 0.800588 | 1.343461e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423510 | MtrunA17_Chr3g0123571 | 99.074 | 324 | 3 | 0 | 1 | 324 | 1 | 324 | 0.0 | 667 |
| Msa0423510 | MtrunA17_Chr8g0381601 | 80.247 | 324 | 63 | 1 | 1 | 324 | 1 | 323 | 0.0 | 555 |
| Msa0423510 | MtrunA17_Chr8g0381611 | 74.528 | 318 | 77 | 1 | 7 | 324 | 2 | 315 | 2.37e-170 | 478 |
| Msa0423510 | MtrunA17_Chr7g0227041 | 69.789 | 331 | 93 | 2 | 1 | 324 | 1 | 331 | 2.27e-168 | 474 |
| Msa0423510 | MtrunA17_Chr2g0326801 | 66.975 | 324 | 101 | 3 | 1 | 323 | 1 | 319 | 8.71e-162 | 456 |
| Msa0423510 | MtrunA17_Chr4g0028891 | 61.337 | 344 | 89 | 3 | 25 | 324 | 1 | 344 | 4.12e-151 | 430 |
| Msa0423510 | MtrunA17_Chr2g0281421 | 52.814 | 231 | 101 | 5 | 102 | 324 | 78 | 308 | 3.87e-79 | 246 |
| Msa0423510 | MtrunA17_Chr4g0047961 | 51.965 | 229 | 104 | 5 | 102 | 324 | 60 | 288 | 7.61e-78 | 242 |
| Msa0423510 | MtrunA17_Chr1g0189401 | 49.372 | 239 | 109 | 5 | 98 | 324 | 75 | 313 | 1.74e-75 | 237 |
| Msa0423510 | MtrunA17_Chr2g0276851 | 45.600 | 250 | 129 | 5 | 82 | 324 | 60 | 309 | 1.46e-72 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423510 | AT1G67850.4 | 75.796 | 314 | 67 | 2 | 17 | 324 | 1 | 311 | 3.61e-178 | 498 |
| Msa0423510 | AT1G67850.6 | 75.796 | 314 | 67 | 2 | 17 | 324 | 17 | 327 | 8.65e-178 | 498 |
| Msa0423510 | AT1G67850.7 | 75.796 | 314 | 67 | 2 | 17 | 324 | 17 | 327 | 8.65e-178 | 498 |
| Msa0423510 | AT1G67850.1 | 75.796 | 314 | 67 | 2 | 17 | 324 | 17 | 327 | 8.65e-178 | 498 |
| Msa0423510 | AT1G67850.3 | 75.796 | 314 | 67 | 2 | 17 | 324 | 17 | 327 | 8.65e-178 | 498 |
| Msa0423510 | AT1G67850.2 | 75.796 | 314 | 67 | 2 | 17 | 324 | 17 | 327 | 8.65e-178 | 498 |
| Msa0423510 | AT1G67850.5 | 75.796 | 314 | 67 | 2 | 17 | 324 | 17 | 327 | 8.65e-178 | 498 |
| Msa0423510 | AT3G27470.2 | 71.207 | 323 | 83 | 4 | 11 | 324 | 2 | 323 | 1.06e-174 | 490 |
| Msa0423510 | AT3G27470.1 | 71.207 | 323 | 83 | 4 | 11 | 324 | 2 | 323 | 1.06e-174 | 490 |
| Msa0423510 | AT3G27470.4 | 71.207 | 323 | 83 | 4 | 11 | 324 | 2 | 323 | 1.06e-174 | 490 |
| Msa0423510 | AT3G27470.3 | 71.207 | 323 | 83 | 4 | 11 | 324 | 2 | 323 | 1.06e-174 | 490 |
| Msa0423510 | AT3G27470.5 | 71.207 | 323 | 83 | 4 | 11 | 324 | 2 | 323 | 2.23e-174 | 489 |
| Msa0423510 | AT1G13000.3 | 67.077 | 325 | 102 | 2 | 6 | 326 | 10 | 333 | 9.42e-170 | 475 |
| Msa0423510 | AT1G13000.2 | 67.183 | 323 | 101 | 2 | 6 | 324 | 10 | 331 | 7.94e-169 | 475 |
| Msa0423510 | AT1G13000.5 | 67.183 | 323 | 101 | 2 | 6 | 324 | 10 | 331 | 7.94e-169 | 475 |
| Msa0423510 | AT1G13000.4 | 67.183 | 323 | 101 | 2 | 6 | 324 | 10 | 331 | 7.94e-169 | 475 |
| Msa0423510 | AT1G13000.1 | 67.183 | 323 | 101 | 2 | 6 | 324 | 10 | 331 | 7.94e-169 | 475 |
| Msa0423510 | AT2G28310.2 | 67.901 | 324 | 87 | 2 | 1 | 324 | 1 | 307 | 1.29e-166 | 468 |
| Msa0423510 | AT2G28310.1 | 67.901 | 324 | 87 | 2 | 1 | 324 | 1 | 307 | 1.29e-166 | 468 |
| Msa0423510 | AT2G28310.3 | 67.901 | 324 | 87 | 2 | 1 | 324 | 1 | 307 | 1.29e-166 | 468 |
| Msa0423510 | AT1G08040.2 | 71.077 | 325 | 82 | 3 | 1 | 324 | 1 | 314 | 2.43e-165 | 466 |
| Msa0423510 | AT1G08040.4 | 71.077 | 325 | 82 | 3 | 1 | 324 | 1 | 314 | 2.43e-165 | 466 |
| Msa0423510 | AT1G08040.1 | 71.077 | 325 | 82 | 3 | 1 | 324 | 1 | 314 | 2.43e-165 | 466 |
| Msa0423510 | AT3G26440.5 | 68.438 | 320 | 93 | 3 | 6 | 324 | 33 | 345 | 1.71e-164 | 465 |
| Msa0423510 | AT3G26440.6 | 68.438 | 320 | 93 | 3 | 6 | 324 | 33 | 345 | 2.20e-164 | 464 |
| Msa0423510 | AT3G26440.1 | 68.438 | 320 | 93 | 3 | 6 | 324 | 10 | 322 | 2.29e-164 | 464 |
| Msa0423510 | AT3G26440.2 | 68.438 | 320 | 93 | 3 | 6 | 324 | 10 | 322 | 2.29e-164 | 464 |
| Msa0423510 | AT3G26440.3 | 68.438 | 320 | 93 | 3 | 6 | 324 | 10 | 322 | 3.48e-164 | 462 |
| Msa0423510 | AT1G08040.3 | 70.769 | 325 | 79 | 4 | 1 | 324 | 1 | 310 | 3.28e-163 | 460 |
| Msa0423510 | AT3G26440.4 | 66.044 | 321 | 75 | 4 | 6 | 324 | 10 | 298 | 5.97e-154 | 436 |
| Msa0423510 | AT1G24570.2 | 65.696 | 309 | 89 | 3 | 17 | 324 | 19 | 311 | 4.33e-148 | 422 |
| Msa0423510 | AT1G24570.1 | 63.107 | 309 | 90 | 4 | 17 | 324 | 19 | 304 | 1.47e-138 | 397 |
| Msa0423510 | AT4G12840.2 | 53.219 | 233 | 100 | 6 | 98 | 324 | 76 | 305 | 1.31e-81 | 253 |
| Msa0423510 | AT4G12840.1 | 53.219 | 233 | 100 | 6 | 98 | 324 | 76 | 305 | 1.80e-81 | 253 |
| Msa0423510 | AT1G11170.2 | 51.073 | 233 | 106 | 5 | 102 | 326 | 83 | 315 | 2.75e-76 | 237 |
| Msa0423510 | AT1G11170.3 | 51.082 | 231 | 105 | 5 | 102 | 324 | 83 | 313 | 1.31e-75 | 237 |
| Msa0423510 | AT1G11170.4 | 51.082 | 231 | 105 | 5 | 102 | 324 | 83 | 313 | 1.37e-75 | 236 |
| Msa0423510 | AT1G11170.8 | 51.082 | 231 | 105 | 5 | 102 | 324 | 83 | 313 | 1.37e-75 | 236 |
| Msa0423510 | AT1G11170.1 | 51.082 | 231 | 105 | 5 | 102 | 324 | 83 | 313 | 7.81e-75 | 237 |
| Msa0423510 | AT1G11170.6 | 51.082 | 231 | 105 | 5 | 102 | 324 | 83 | 313 | 7.81e-75 | 237 |
| Msa0423510 | AT1G11170.5 | 51.082 | 231 | 105 | 5 | 102 | 324 | 83 | 313 | 7.81e-75 | 237 |
| Msa0423510 | AT1G11170.7 | 51.082 | 231 | 105 | 5 | 102 | 324 | 83 | 313 | 7.81e-75 | 237 |
| Msa0423510 | AT4G12840.3 | 53.271 | 214 | 91 | 6 | 117 | 324 | 1 | 211 | 2.98e-74 | 231 |
| Msa0423510 | AT1G61240.8 | 51.082 | 231 | 105 | 5 | 102 | 324 | 13 | 243 | 3.47e-74 | 233 |
| Msa0423510 | AT1G61240.7 | 51.082 | 231 | 105 | 5 | 102 | 324 | 80 | 310 | 6.78e-74 | 232 |
| Msa0423510 | AT4G18530.2 | 46.502 | 243 | 113 | 6 | 96 | 326 | 69 | 306 | 1.17e-73 | 230 |
| Msa0423510 | AT1G61240.4 | 51.082 | 231 | 105 | 5 | 102 | 324 | 80 | 310 | 3.03e-73 | 232 |
| Msa0423510 | AT1G61240.5 | 51.082 | 231 | 105 | 5 | 102 | 324 | 80 | 310 | 3.03e-73 | 232 |
| Msa0423510 | AT1G61240.6 | 51.082 | 231 | 105 | 5 | 102 | 324 | 80 | 310 | 3.03e-73 | 232 |
| Msa0423510 | AT1G61240.2 | 51.082 | 231 | 105 | 5 | 102 | 324 | 80 | 310 | 3.03e-73 | 232 |
| Msa0423510 | AT1G61240.1 | 51.082 | 231 | 105 | 5 | 102 | 324 | 80 | 310 | 3.03e-73 | 232 |
| Msa0423510 | AT1G61240.3 | 51.082 | 231 | 105 | 5 | 102 | 324 | 80 | 310 | 3.03e-73 | 232 |
| Msa0423510 | AT4G18530.1 | 46.473 | 241 | 112 | 6 | 96 | 324 | 69 | 304 | 3.23e-72 | 229 |
| Msa0423510 | AT4G18530.3 | 46.473 | 241 | 112 | 6 | 96 | 324 | 64 | 299 | 4.18e-72 | 228 |
| Msa0423510 | AT2G25905.1 | 48.485 | 231 | 96 | 5 | 17 | 246 | 19 | 227 | 3.67e-65 | 205 |
| Msa0423510 | AT1G11170.9 | 50.877 | 171 | 79 | 3 | 102 | 267 | 83 | 253 | 9.74e-53 | 174 |
Find 113 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATGACTATATATTTATA+TGG | 0.213074 | 3_2:+73364046 | Msa0423510:CDS |
| TTGCCATGTCAACCCTTTAT+TGG | 0.257735 | 3_2:-73364247 | None:intergenic |
| ACGCTGCACAAGGAGGTAAA+TGG | 0.258388 | 3_2:-73364439 | None:intergenic |
| CAGGGAAGTTCCGAAATAAA+TGG | 0.282809 | 3_2:+73362640 | Msa0423510:exon |
| TCTGCTCCTCTTGGATTTGA+TGG | 0.289728 | 3_2:-73363360 | None:intergenic |
| TGCCATGTCAACCCTTTATT+GGG | 0.303558 | 3_2:-73364246 | None:intergenic |
| AAGCATATTTGTTTCTTATA+CGG | 0.306033 | 3_2:+73362552 | Msa0423510:five_prime_UTR |
| CCTGGTTTAGAACCCAATAA+AGG | 0.308435 | 3_2:+73364234 | Msa0423510:CDS |
| TTGTGTCTGGCATATGATTC+AGG | 0.313499 | 3_2:+73364595 | Msa0423510:CDS |
| GCTCTCTTTGTTGTTGAGTT+TGG | 0.317420 | 3_2:-73361463 | None:intergenic |
| ATGCAGGTTTGTTGAGATTA+TGG | 0.320597 | 3_2:+73364544 | Msa0423510:intron |
| GTTGTGTTGTGTTGTGAGTT+TGG | 0.330989 | 3_2:-73361505 | None:intergenic |
| TTCCTCCGACACCCCTCAGC+TGG | 0.337553 | 3_2:+73361628 | Msa0423510:five_prime_UTR |
| GTAACGGTCCCCATTTATTT+CGG | 0.349465 | 3_2:-73362650 | None:intergenic |
| CGCTGCACAAGGAGGTAAAT+GGG | 0.354183 | 3_2:-73364438 | None:intergenic |
| TGGTCCTAGCAGCGGCTTAC+CGG | 0.356002 | 3_2:+73364837 | Msa0423510:three_prime_UTR |
| TATTGATGCAGCCGTGAAAA+AGG | 0.363474 | 3_2:+73363628 | Msa0423510:CDS |
| ATCCTTCTATTTCATTATGA+TGG | 0.372976 | 3_2:+73363752 | Msa0423510:CDS |
| GGTAAACTTTCTGCTCCTCT+TGG | 0.388659 | 3_2:-73363369 | None:intergenic |
| GGCCATCATAATGAAATAGA+AGG | 0.390690 | 3_2:-73363754 | None:intergenic |
| GAGAAGCATGGCGTTGTGTC+TGG | 0.390721 | 3_2:+73364582 | Msa0423510:CDS |
| CATGCTTCTCGCGAGAATAC+TGG | 0.396635 | 3_2:-73364569 | None:intergenic |
| CAAGTGCAGGTACTTAAAAC+TGG | 0.397978 | 3_2:+73364182 | Msa0423510:intron |
| GTGCTCGCAAACAGACTAAA+TGG | 0.402665 | 3_2:+73363828 | Msa0423510:CDS |
| CATTTATTTCGGAACTTCCC+TGG | 0.403522 | 3_2:-73362639 | None:intergenic |
| TCCTCCGACACCCCTCAGCT+GGG | 0.405252 | 3_2:+73361629 | Msa0423510:five_prime_UTR |
| AATAAGCCTCATAATTTCAC+TGG | 0.409734 | 3_2:-73362813 | None:intergenic |
| TTGCAGTTCAATCTCCCATC+TGG | 0.411688 | 3_2:+73363022 | Msa0423510:intron |
| GTGTCATTTGATAAGTGATT+TGG | 0.412581 | 3_2:-73363139 | None:intergenic |
| TAGAGTGACGGAGGAGAAAC+CGG | 0.412831 | 3_2:+73364400 | Msa0423510:intron |
| TTTATTGGATGCAGTCCTAA+TGG | 0.423254 | 3_2:+73362782 | Msa0423510:intron |
| AGGGAAGTTCCGAAATAAAT+GGG | 0.425120 | 3_2:+73362641 | Msa0423510:exon |
| CAGAAGAATGGAACCTTCAC+TGG | 0.430195 | 3_2:-73361567 | None:intergenic |
| CTGGTTTAGAACCCAATAAA+GGG | 0.442489 | 3_2:+73364235 | Msa0423510:CDS |
| ATTTATATGGGATGAAGACT+TGG | 0.443996 | 3_2:+73364059 | Msa0423510:CDS |
| TACATTGAAGAAAGATATAC+AGG | 0.451027 | 3_2:+73363070 | Msa0423510:CDS |
| CATATAAATATATAGTCATA+TGG | 0.467190 | 3_2:-73364045 | None:intergenic |
| TCATATGGTGCCACAATGTC+AGG | 0.467804 | 3_2:-73364030 | None:intergenic |
| TTCACCATTCATCAACTAGA+AGG | 0.471634 | 3_2:-73362581 | None:intergenic |
| AAAATTGTAGAAGAAGAAGA+AGG | 0.473103 | 3_2:+73361414 | None:intergenic |
| CTTGGCATTGCAGAATGACT+TGG | 0.475324 | 3_2:+73364710 | Msa0423510:intron |
| GTGAAGGTCACAAGGTACTT+TGG | 0.484389 | 3_2:-73363581 | None:intergenic |
| GAAAACCCAGTGAAATTATG+AGG | 0.490987 | 3_2:+73362807 | Msa0423510:CDS |
| ACTGGTGAAGAAGCATGGCC+TGG | 0.491574 | 3_2:+73364200 | Msa0423510:CDS |
| CGACTCAGCTTCAACAATGC+CGG | 0.491664 | 3_2:-73363394 | None:intergenic |
| GGCCTGGAGATTTCACAGCC+TGG | 0.496813 | 3_2:+73364216 | Msa0423510:CDS |
| ATGATGGCCGAGCTAATGAA+TGG | 0.499945 | 3_2:+73363768 | Msa0423510:CDS |
| CCTTTATTGGGTTCTAAACC+AGG | 0.501314 | 3_2:-73364234 | None:intergenic |
| TGAAGGTTCCATTCTTCTGC+CGG | 0.503865 | 3_2:+73361571 | Msa0423510:five_prime_UTR |
| GATATACAGGCCGTCGTGCT+TGG | 0.507431 | 3_2:+73363083 | Msa0423510:CDS |
| GACTCAGCTTCAACAATGCC+GGG | 0.509378 | 3_2:-73363393 | None:intergenic |
| TCTTAAGATACACACCTCAC+TGG | 0.511552 | 3_2:-73363448 | None:intergenic |
| ATATGACTATATATTTATAT+GGG | 0.518689 | 3_2:+73364047 | Msa0423510:CDS |
| CGGCATTGTTGAAGCTGAGT+CGG | 0.519485 | 3_2:+73363395 | Msa0423510:CDS |
| AATGACTTGGTCCATGGATG+GGG | 0.521935 | 3_2:+73364723 | Msa0423510:CDS |
| TGTCGGAGGAACGTGGAAGA+AGG | 0.523573 | 3_2:-73361616 | None:intergenic |
| AACCAGGCTGTGAAATCTCC+AGG | 0.532638 | 3_2:-73364218 | None:intergenic |
| CTTAAGATACACACCTCACT+GGG | 0.536039 | 3_2:-73363447 | None:intergenic |
| CAAAATCAAGTCCCCATCCA+TGG | 0.537352 | 3_2:-73364734 | None:intergenic |
| GATACCTTCTAGTTGATGAA+TGG | 0.538994 | 3_2:+73362577 | Msa0423510:five_prime_UTR |
| TCCAACATTGTCATTAACAA+AGG | 0.539794 | 3_2:+73362886 | Msa0423510:CDS |
| AAACCCCAGCTGAGGGGTGT+CGG | 0.552127 | 3_2:-73361633 | None:intergenic |
| AAATTGTAGAAGAAGAAGAA+GGG | 0.552455 | 3_2:+73361415 | None:intergenic |
| ACCTTTGTTAATGACAATGT+TGG | 0.557482 | 3_2:-73362887 | None:intergenic |
| GAATGACTTGGTCCATGGAT+GGG | 0.558080 | 3_2:+73364722 | Msa0423510:intron |
| CCTCCGACACCCCTCAGCTG+GGG | 0.559406 | 3_2:+73361630 | Msa0423510:five_prime_UTR |
| TTGCAGAATGACTTGGTCCA+TGG | 0.561994 | 3_2:+73364717 | Msa0423510:intron |
| TGCAGTTAGAAGATGTGTTG+AGG | 0.565260 | 3_2:+73364755 | Msa0423510:CDS |
| TCGAGGGAAGCAAGCCAGAT+GGG | 0.567592 | 3_2:-73363036 | None:intergenic |
| AAATGGGGACCGTTACTCGC+AGG | 0.570066 | 3_2:+73362657 | Msa0423510:exon |
| TTCTCCGGTAAGCCGCTGCT+AGG | 0.570900 | 3_2:-73364841 | None:intergenic |
| TGAGTTTGAATGGTCAAAGA+AGG | 0.573343 | 3_2:+73363793 | Msa0423510:CDS |
| CAGTATTCTCGCGAGAAGCA+TGG | 0.573602 | 3_2:+73364570 | Msa0423510:CDS |
| AGAATGACTTGGTCCATGGA+TGG | 0.574042 | 3_2:+73364721 | Msa0423510:intron |
| TACCTTGTGACCTTCACTGT+TGG | 0.581078 | 3_2:+73363587 | Msa0423510:CDS |
| ACTCATCCCATTCATTAGCT+CGG | 0.581632 | 3_2:-73363775 | None:intergenic |
| ATGAATGGGATGAGTTTGAA+TGG | 0.582732 | 3_2:+73363783 | Msa0423510:CDS |
| CATTTCATAGCCAACAGTGA+AGG | 0.584725 | 3_2:-73363597 | None:intergenic |
| ATCGAGGGAAGCAAGCCAGA+TGG | 0.584820 | 3_2:-73363037 | None:intergenic |
| TTTATATGGGATGAAGACTT+GGG | 0.588977 | 3_2:+73364060 | Msa0423510:CDS |
| CCCCAGCTGAGGGGTGTCGG+AGG | 0.589695 | 3_2:-73361630 | None:intergenic |
| ATAAGCCTCATAATTTCACT+GGG | 0.590143 | 3_2:-73362812 | None:intergenic |
| AGAGTGACGGAGGAGAAACC+GGG | 0.592731 | 3_2:+73364401 | Msa0423510:intron |
| TGTGTTGTGAGTTTGGAACA+AGG | 0.593068 | 3_2:-73361498 | None:intergenic |
| ATTATCAGACCTGCGAGTAA+CGG | 0.593281 | 3_2:-73362666 | None:intergenic |
| GGAGCAGAAAGTTTACCTCC+CGG | 0.596329 | 3_2:+73363375 | Msa0423510:CDS |
| TTGTGAGTTTGGAACAAGGA+GGG | 0.598179 | 3_2:-73361494 | None:intergenic |
| TTAAAACTGGTGAAGAAGCA+TGG | 0.599811 | 3_2:+73364195 | Msa0423510:CDS |
| AGCCAACAGTGAAGGTCACA+AGG | 0.602730 | 3_2:-73363589 | None:intergenic |
| CTTATCAAATGACACATCAA+AGG | 0.609949 | 3_2:+73363147 | Msa0423510:CDS |
| GAGTTTGGAACAAGGAGGGA+GGG | 0.611388 | 3_2:-73361490 | None:intergenic |
| AACCCAATAAAGGGTTGACA+TGG | 0.618140 | 3_2:+73364244 | Msa0423510:CDS |
| GCTTCCTATAAAACCAGTGA+AGG | 0.619411 | 3_2:+73361554 | Msa0423510:five_prime_UTR |
| ATTTCTGCATCCTGACATTG+TGG | 0.619915 | 3_2:+73364020 | Msa0423510:CDS |
| TGATGGCCGAGCTAATGAAT+GGG | 0.623524 | 3_2:+73363769 | Msa0423510:CDS |
| TGAGTTTGGAACAAGGAGGG+AGG | 0.624086 | 3_2:-73361491 | None:intergenic |
| GCTGCACAAGGAGGTAAATG+GGG | 0.631284 | 3_2:-73364437 | None:intergenic |
| TTACAGCATGGTCCTAGCAG+CGG | 0.638853 | 3_2:+73364829 | Msa0423510:three_prime_UTR |
| GCAGTTACTTACGCTGCACA+AGG | 0.640937 | 3_2:-73364449 | None:intergenic |
| AATGTAAGAGAGATCAATCG+AGG | 0.643208 | 3_2:-73363053 | None:intergenic |
| ACGTGGAAGAAGGTGAAGAA+CGG | 0.648166 | 3_2:-73361606 | None:intergenic |
| TGAGGGGTGTCGGAGGAACG+TGG | 0.658428 | 3_2:-73361623 | None:intergenic |
| ATGTAAGAGAGATCAATCGA+GGG | 0.669290 | 3_2:-73363052 | None:intergenic |
| GGGAAGTTCCGAAATAAATG+GGG | 0.684311 | 3_2:+73362642 | Msa0423510:exon |
| TGACGGAGGAGAAACCGGGA+TGG | 0.686924 | 3_2:+73364405 | Msa0423510:CDS |
| CTGCACAAGGAGGTAAATGG+GGG | 0.692874 | 3_2:-73364436 | None:intergenic |
| AAAAGAAAACCCCAGCTGAG+GGG | 0.696223 | 3_2:-73361639 | None:intergenic |
| ATTGTGGGGCAAACCCAGTG+AGG | 0.712457 | 3_2:+73363434 | Msa0423510:CDS |
| TGGGTTCCATCAAATCCAAG+AGG | 0.719624 | 3_2:+73363354 | Msa0423510:CDS |
| GTTACTTACGCTGCACAAGG+AGG | 0.742418 | 3_2:-73364446 | None:intergenic |
| TTATAAAAGACCAAGCACGA+CGG | 0.744122 | 3_2:-73363093 | None:intergenic |
| TCAGCTTCAACAATGCCGGG+AGG | 0.767152 | 3_2:-73363390 | None:intergenic |
| GTTGTGAGTTTGGAACAAGG+AGG | 0.767505 | 3_2:-73361495 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTTATGATAAT+TGG | + | chr3_2:73361855-73361874 | Msa0423510:intron | 10.0% |
| !!! | ATATTGTTTTATATAATACT+GGG | + | chr3_2:73363262-73363281 | Msa0423510:intron | 10.0% |
| !! | ATATGACTATATATTTATAT+GGG | + | chr3_2:73364047-73364066 | Msa0423510:CDS | 10.0% |
| !!! | ATCTTTAATGTTTTTTTTTT+TGG | + | chr3_2:73364131-73364150 | Msa0423510:intron | 10.0% |
| !!! | TCTTTAATGTTTTTTTTTTT+GGG | + | chr3_2:73364132-73364151 | Msa0423510:intron | 10.0% |
| !! | ATAAATTTATTCAAAGTTGA+AGG | - | chr3_2:73361778-73361797 | None:intergenic | 15.0% |
| !!! | AGTTAATGATAATCTATTTT+TGG | - | chr3_2:73361917-73361936 | None:intergenic | 15.0% |
| !!! | TTTTAGTTGTTTTTTGTTAT+TGG | + | chr3_2:73362966-73362985 | Msa0423510:intron | 15.0% |
| !!! | GATATTGTTTTATATAATAC+TGG | + | chr3_2:73363261-73363280 | Msa0423510:intron | 15.0% |
| !! | AATATGATAACAATCAATTA+TGG | - | chr3_2:73363959-73363978 | None:intergenic | 15.0% |
| !! | CATATAAATATATAGTCATA+TGG | - | chr3_2:73364048-73364067 | None:intergenic | 15.0% |
| !! | CATATGACTATATATTTATA+TGG | + | chr3_2:73364046-73364065 | Msa0423510:CDS | 15.0% |
| !! | ATCTATCAATAATAACTTGA+AGG | - | chr3_2:73361804-73361823 | None:intergenic | 20.0% |
| !!! | AATATGAATCTTTTCTTTGA+TGG | + | chr3_2:73361973-73361992 | Msa0423510:intron | 20.0% |
| !!! | ATTCTCATATTAAGGATTTT+AGG | + | chr3_2:73362372-73362391 | Msa0423510:intron | 20.0% |
| !! | AATAATTATCCCTTATTCTT+AGG | + | chr3_2:73362446-73362465 | Msa0423510:intron | 20.0% |
| !!! | AAGCATATTTGTTTCTTATA+CGG | + | chr3_2:73362552-73362571 | Msa0423510:five_prime_UTR | 20.0% |
| !!! | GTGTGACAAATTTTTTTTAT+TGG | + | chr3_2:73362767-73362786 | Msa0423510:intron | 20.0% |
| !! | TCATTGATACATAATTGATA+TGG | + | chr3_2:73363226-73363245 | Msa0423510:intron | 20.0% |
| !! | CATTGATACATAATTGATAT+GGG | + | chr3_2:73363227-73363246 | Msa0423510:intron | 20.0% |
| !! | TTTATATAATACTGGGAAAA+TGG | + | chr3_2:73363269-73363288 | Msa0423510:intron | 20.0% |
| !! | ATGTAATTTATAGCCATATT+AGG | - | chr3_2:73363485-73363504 | None:intergenic | 20.0% |
| !! | TCATTAAACAACTAATTAGT+GGG | - | chr3_2:73364654-73364673 | None:intergenic | 20.0% |
| !! | ATCATTAAACAACTAATTAG+TGG | - | chr3_2:73364655-73364674 | None:intergenic | 20.0% |
| !! | AATTACAATTGTATAACTCT+TGG | + | chr3_2:73364692-73364711 | Msa0423510:intron | 20.0% |
| ! | TATGATAATTGGTACAATTG+TGG | + | chr3_2:73361866-73361885 | Msa0423510:intron | 25.0% |
| ! | TTGCTTCAACTTATTTATGA+AGG | - | chr3_2:73362337-73362356 | None:intergenic | 25.0% |
| !!! | TAAGGATTTTAGGTGATATT+AGG | + | chr3_2:73362382-73362401 | Msa0423510:intron | 25.0% |
| ! | AAAAAAAATTTGTCACACAG+TGG | - | chr3_2:73362765-73362784 | None:intergenic | 25.0% |
| !! | CTTATTGTGACAACTTTTAT+TGG | + | chr3_2:73362830-73362849 | Msa0423510:CDS | 25.0% |
| !! | ACTTTTATTGGAGTAGTTTT+TGG | + | chr3_2:73362842-73362861 | Msa0423510:CDS | 25.0% |
| ! | TACATTGAAGAAAGATATAC+AGG | + | chr3_2:73363070-73363089 | Msa0423510:CDS | 25.0% |
| ! | TGTAGAGAAACAACAAAATA+AGG | - | chr3_2:73363330-73363349 | None:intergenic | 25.0% |
| ! | TGTATCTTAAGACAGTTTAT+AGG | + | chr3_2:73363459-73363478 | Msa0423510:intron | 25.0% |
| !!! | TTAACTAAGTTGACATTTTC+AGG | + | chr3_2:73363544-73363563 | Msa0423510:intron | 25.0% |
| ! | ATCCTTCTATTTCATTATGA+TGG | + | chr3_2:73363752-73363771 | Msa0423510:CDS | 25.0% |
| !!! | ATAGCAACTCACTTTTAATT+AGG | - | chr3_2:73363935-73363954 | None:intergenic | 25.0% |
| !!! | TGTATTAGTCTTGTATTATC+TGG | + | chr3_2:73364480-73364499 | Msa0423510:intron | 25.0% |
| !!! | TTAGTGGGAATCTTTTAAAA+CGG | - | chr3_2:73364639-73364658 | None:intergenic | 25.0% |
| !!! | TGTTGTTGAGTTTGGTTTTT+AGG | - | chr3_2:73361458-73361477 | None:intergenic | 30.0% |
| !!! | CTTAGCCTTTTGAGTTAATT+TGG | + | chr3_2:73362090-73362109 | Msa0423510:intron | 30.0% |
| ACCTACCAAATTAACTCAAA+AGG | - | chr3_2:73362098-73362117 | None:intergenic | 30.0% | |
| GCATAAGACAAATGACAATT+AGG | - | chr3_2:73362249-73362268 | None:intergenic | 30.0% | |
| ! | AATTGTCATTTGTCTTATGC+TGG | + | chr3_2:73362249-73362268 | Msa0423510:intron | 30.0% |
| TGTCTGTCATTCTCATATTA+AGG | + | chr3_2:73362364-73362383 | Msa0423510:intron | 30.0% | |
| GAGCAAAGAATTATATCGTT+TGG | - | chr3_2:73362420-73362439 | None:intergenic | 30.0% | |
| CTTCAAACTCCTAAGAATAA+GGG | - | chr3_2:73362458-73362477 | None:intergenic | 30.0% | |
| ! | TTAGGAGTTTGAAGCATTAT+CGG | + | chr3_2:73362464-73362483 | Msa0423510:intron | 30.0% |
| !!! | TTGTTGTTTTTTTCTTCAGC+AGG | + | chr3_2:73362511-73362530 | Msa0423510:intron | 30.0% |
| !!! | TGTTGTTTTTTTCTTCAGCA+GGG | + | chr3_2:73362512-73362531 | Msa0423510:intron | 30.0% |
| TTGACATAAACTAGCATATG+TGG | - | chr3_2:73362734-73362753 | None:intergenic | 30.0% | |
| ATAAGCCTCATAATTTCACT+GGG | - | chr3_2:73362815-73362834 | None:intergenic | 30.0% | |
| AATAAGCCTCATAATTTCAC+TGG | - | chr3_2:73362816-73362835 | None:intergenic | 30.0% | |
| !!! | GTAGTTTTTGGTTTCTTTCT+AGG | + | chr3_2:73362854-73362873 | Msa0423510:CDS | 30.0% |
| TCCAACATTGTCATTAACAA+AGG | + | chr3_2:73362886-73362905 | Msa0423510:CDS | 30.0% | |
| ACCTTTGTTAATGACAATGT+TGG | - | chr3_2:73362890-73362909 | None:intergenic | 30.0% | |
| TAGTTTCTTCTTCCTCTTTA+CGG | + | chr3_2:73362917-73362936 | Msa0423510:intron | 30.0% | |
| !! | GTGTCATTTGATAAGTGATT+TGG | - | chr3_2:73363142-73363161 | None:intergenic | 30.0% |
| CTTATCAAATGACACATCAA+AGG | + | chr3_2:73363147-73363166 | Msa0423510:CDS | 30.0% | |
| GTATCCTGTCATCATTATTA+AGG | + | chr3_2:73363178-73363197 | Msa0423510:intron | 30.0% | |
| ATGTCCTTAATAATGATGAC+AGG | - | chr3_2:73363185-73363204 | None:intergenic | 30.0% | |
| !! | TTGTTGTTTCTCTACAGATA+TGG | + | chr3_2:73363334-73363353 | Msa0423510:intron | 30.0% |
| !! | TGTTGTTTCTCTACAGATAT+GGG | + | chr3_2:73363335-73363354 | Msa0423510:intron | 30.0% |
| AAATCCTCTGTAAACAATGA+AGG | - | chr3_2:73363526-73363545 | None:intergenic | 30.0% | |
| !! | ACTAAGAAAGACCTTTTTCA+CGG | - | chr3_2:73363642-73363661 | None:intergenic | 30.0% |
| !! | ACCAGTGTGTTATTAACTTT+TGG | + | chr3_2:73363857-73363876 | Msa0423510:intron | 30.0% |
| TCCAAAAGTTAATAACACAC+TGG | - | chr3_2:73363861-73363880 | None:intergenic | 30.0% | |
| ! | TGGATGAAAGATTTTCATTG+TGG | + | chr3_2:73363877-73363896 | Msa0423510:intron | 30.0% |
| !! | ATTTGAGATTTTACCCTTCT+AGG | + | chr3_2:73363983-73364002 | Msa0423510:intron | 30.0% |
| ATTTATATGGGATGAAGACT+TGG | + | chr3_2:73364059-73364078 | Msa0423510:CDS | 30.0% | |
| TTTATATGGGATGAAGACTT+GGG | + | chr3_2:73364060-73364079 | Msa0423510:CDS | 30.0% | |
| CATATCAAATACTCACTCTT+CGG | - | chr3_2:73364103-73364122 | None:intergenic | 30.0% | |
| GAAGAGTGAGTATTTGATAT+GGG | + | chr3_2:73364102-73364121 | Msa0423510:intron | 30.0% | |
| !!! | GCGTTAACTATTGATTTTCT+TGG | + | chr3_2:73364369-73364388 | Msa0423510:intron | 30.0% |
| ! | TTGGATTTTTGTTAGAGTGA+CGG | + | chr3_2:73364388-73364407 | Msa0423510:intron | 30.0% |
| ACAAGACTAATACATTACAC+CGG | - | chr3_2:73364474-73364493 | None:intergenic | 30.0% | |
| !! | TCATTCTTACTTTTACAGCA+TGG | + | chr3_2:73364817-73364836 | Msa0423510:three_prime_UTR | 30.0% |
| !!! | GTTGAGTTTGGTTTTTAGGT+GGG | - | chr3_2:73361454-73361473 | None:intergenic | 35.0% |
| !!! | TGTTGAGTTTGGTTTTTAGG+TGG | - | chr3_2:73361455-73361474 | None:intergenic | 35.0% |
| ! | AGAACGGAAGATGAATTTTC+CGG | - | chr3_2:73361593-73361612 | None:intergenic | 35.0% |
| ! | CAGATCTTCATCTCTTTTTC+TGG | + | chr3_2:73361696-73361715 | Msa0423510:five_prime_UTR | 35.0% |
| !! | ATCTCTTTTTCTGGTACGTT+TGG | + | chr3_2:73361705-73361724 | Msa0423510:intron | 35.0% |
| !!! | ACAATTGTGGCTGTTTTGAT+TGG | + | chr3_2:73361879-73361898 | Msa0423510:intron | 35.0% |
| ! | TGCCACATGCTTTTGTAATT+GGG | + | chr3_2:73362012-73362031 | Msa0423510:intron | 35.0% |
| ! | ATTGGGGAGCTACTAATTTT+AGG | + | chr3_2:73362029-73362048 | Msa0423510:intron | 35.0% |
| !!! | GCCTTTTGAGTTAATTTGGT+AGG | + | chr3_2:73362094-73362113 | Msa0423510:intron | 35.0% |
| CATCATCTGCTAGCTATATT+TGG | + | chr3_2:73362152-73362171 | Msa0423510:intron | 35.0% | |
| ! | AGCTATATTTGGTTCCTTTG+TGG | + | chr3_2:73362163-73362182 | Msa0423510:intron | 35.0% |
| TTTCCTTGAAGTAACCACAA+AGG | - | chr3_2:73362180-73362199 | None:intergenic | 35.0% | |
| ! | ATGATTAGTTCCTTTGCACA+TGG | + | chr3_2:73362294-73362313 | Msa0423510:intron | 35.0% |
| GCTTCAAACTCCTAAGAATA+AGG | - | chr3_2:73362459-73362478 | None:intergenic | 35.0% | |
| ! | TAGGAGTTTGAAGCATTATC+GGG | + | chr3_2:73362465-73362484 | Msa0423510:intron | 35.0% |
| !!! | GTTGTTTTTTTCTTCAGCAG+GGG | + | chr3_2:73362513-73362532 | Msa0423510:intron | 35.0% |
| !! | GATACCTTCTAGTTGATGAA+TGG | + | chr3_2:73362577-73362596 | Msa0423510:five_prime_UTR | 35.0% |
| TTCACCATTCATCAACTAGA+AGG | - | chr3_2:73362584-73362603 | None:intergenic | 35.0% | |
| AGGGAAGTTCCGAAATAAAT+GGG | + | chr3_2:73362641-73362660 | Msa0423510:exon | 35.0% | |
| AAAAATTTGTCACACAGTGG+TGG | - | chr3_2:73362762-73362781 | None:intergenic | 35.0% | |
| TTTATTGGATGCAGTCCTAA+TGG | + | chr3_2:73362782-73362801 | Msa0423510:intron | 35.0% | |
| GAAAACCCAGTGAAATTATG+AGG | + | chr3_2:73362807-73362826 | Msa0423510:CDS | 35.0% | |
| AATAATCTACTGCAGCACAA+AGG | - | chr3_2:73362947-73362966 | None:intergenic | 35.0% | |
| ATGTAAGAGAGATCAATCGA+GGG | - | chr3_2:73363055-73363074 | None:intergenic | 35.0% | |
| AATGTAAGAGAGATCAATCG+AGG | - | chr3_2:73363056-73363075 | None:intergenic | 35.0% | |
| TTATAAAAGACCAAGCACGA+CGG | - | chr3_2:73363096-73363115 | None:intergenic | 35.0% | |
| ! | ACTTTTACTTGCGTAGATTG+TGG | + | chr3_2:73363418-73363437 | Msa0423510:CDS | 35.0% |
| ! | CTTTTACTTGCGTAGATTGT+GGG | + | chr3_2:73363419-73363438 | Msa0423510:CDS | 35.0% |
| ! | TTTTACTTGCGTAGATTGTG+GGG | + | chr3_2:73363420-73363439 | Msa0423510:CDS | 35.0% |
| GACAGTTTATAGGCCTAATA+TGG | + | chr3_2:73363469-73363488 | Msa0423510:intron | 35.0% | |
| TGTAAACAATGAAGGTCAGA+AGG | - | chr3_2:73363518-73363537 | None:intergenic | 35.0% | |
| GGCCATCATAATGAAATAGA+AGG | - | chr3_2:73363757-73363776 | None:intergenic | 35.0% | |
| ATGAATGGGATGAGTTTGAA+TGG | + | chr3_2:73363783-73363802 | Msa0423510:CDS | 35.0% | |
| TGAGTTTGAATGGTCAAAGA+AGG | + | chr3_2:73363793-73363812 | Msa0423510:CDS | 35.0% | |
| CGAAGAGTGAGTATTTGATA+TGG | + | chr3_2:73364101-73364120 | Msa0423510:intron | 35.0% | |
| AGTGAGTATTTGATATGGGA+AGG | + | chr3_2:73364106-73364125 | Msa0423510:intron | 35.0% | |
| TTAAAACTGGTGAAGAAGCA+TGG | + | chr3_2:73364195-73364214 | Msa0423510:CDS | 35.0% | |
| ! | CTGGTTTAGAACCCAATAAA+GGG | + | chr3_2:73364235-73364254 | Msa0423510:CDS | 35.0% |
| TGGCAAATGACAAAAAGAAG+AGG | + | chr3_2:73364264-73364283 | Msa0423510:CDS | 35.0% | |
| TCTTGTATTATCTGGTCTAC+CGG | + | chr3_2:73364488-73364507 | Msa0423510:intron | 35.0% | |
| !! | ATGCAGGTTTGTTGAGATTA+TGG | + | chr3_2:73364544-73364563 | Msa0423510:intron | 35.0% |
| !!! | GGGAATCTTTTAAAACGGTT+AGG | - | chr3_2:73364634-73364653 | None:intergenic | 35.0% |
| !!! | GTTTGGTTTTTAGGTGGGTT+TGG | - | chr3_2:73361449-73361468 | None:intergenic | 40.0% |
| !! | GCTCTCTTTGTTGTTGAGTT+TGG | - | chr3_2:73361466-73361485 | None:intergenic | 40.0% |
| ! | TTGTGAGTTTGGAACAAGGA+GGG | - | chr3_2:73361497-73361516 | None:intergenic | 40.0% |
| ! | TGTGTTGTGAGTTTGGAACA+AGG | - | chr3_2:73361501-73361520 | None:intergenic | 40.0% |
| GTTGTGTTGTGTTGTGAGTT+TGG | - | chr3_2:73361508-73361527 | None:intergenic | 40.0% | |
| GCTTCCTATAAAACCAGTGA+AGG | + | chr3_2:73361554-73361573 | Msa0423510:five_prime_UTR | 40.0% | |
| !!! | GGAACCTTCACTGGTTTTAT+AGG | - | chr3_2:73361561-73361580 | None:intergenic | 40.0% |
| ! | TGAATTTTCCGGCAGAAGAA+TGG | - | chr3_2:73361582-73361601 | None:intergenic | 40.0% |
| AAAAAGAAAACCCCAGCTGA+GGG | - | chr3_2:73361643-73361662 | None:intergenic | 40.0% | |
| ! | CTGCCACATGCTTTTGTAAT+TGG | + | chr3_2:73362011-73362030 | Msa0423510:intron | 40.0% |
| ! | GCCACATGCTTTTGTAATTG+GGG | + | chr3_2:73362013-73362032 | Msa0423510:intron | 40.0% |
| ! | TCCCCAATTACAAAAGCATG+TGG | - | chr3_2:73362017-73362036 | None:intergenic | 40.0% |
| ! | ATTGAAGAAAAGTGCAAGCG+TGG | + | chr3_2:73362119-73362138 | Msa0423510:intron | 40.0% |
| GTTCCTTTGTGGTTACTTCA+AGG | + | chr3_2:73362174-73362193 | Msa0423510:intron | 40.0% | |
| AGTTCCTTTGCACATGGTTA+TGG | + | chr3_2:73362300-73362319 | Msa0423510:intron | 40.0% | |
| CAAACCATAACCATGTGCAA+AGG | - | chr3_2:73362307-73362326 | None:intergenic | 40.0% | |
| GAATTATATCGTTTGGCGTG+TGG | - | chr3_2:73362413-73362432 | None:intergenic | 40.0% | |
| ! | GTTTGAAGCATTATCGGGTT+TGG | + | chr3_2:73362470-73362489 | Msa0423510:intron | 40.0% |
| !! | AGTTTTATGAGCATACAGCC+AGG | + | chr3_2:73362621-73362640 | Msa0423510:five_prime_UTR | 40.0% |
| ! | GTTTTATGAGCATACAGCCA+GGG | + | chr3_2:73362622-73362641 | Msa0423510:five_prime_UTR | 40.0% |
| CATTTATTTCGGAACTTCCC+TGG | - | chr3_2:73362642-73362661 | None:intergenic | 40.0% | |
| CAGGGAAGTTCCGAAATAAA+TGG | + | chr3_2:73362640-73362659 | Msa0423510:exon | 40.0% | |
| GGGAAGTTCCGAAATAAATG+GGG | + | chr3_2:73362642-73362661 | Msa0423510:exon | 40.0% | |
| GTAACGGTCCCCATTTATTT+CGG | - | chr3_2:73362653-73362672 | None:intergenic | 40.0% | |
| ATTATCAGACCTGCGAGTAA+CGG | - | chr3_2:73362669-73362688 | None:intergenic | 40.0% | |
| ! | TCACTGGGTTTTCTACCATT+AGG | - | chr3_2:73362800-73362819 | None:intergenic | 40.0% |
| CTTAAGATACACACCTCACT+GGG | - | chr3_2:73363450-73363469 | None:intergenic | 40.0% | |
| TCTTAAGATACACACCTCAC+TGG | - | chr3_2:73363451-73363470 | None:intergenic | 40.0% | |
| CTGACCTTCATTGTTTACAG+AGG | + | chr3_2:73363519-73363538 | Msa0423510:intron | 40.0% | |
| CATTTCATAGCCAACAGTGA+AGG | - | chr3_2:73363600-73363619 | None:intergenic | 40.0% | |
| TATTGATGCAGCCGTGAAAA+AGG | + | chr3_2:73363628-73363647 | Msa0423510:CDS | 40.0% | |
| ACTCATCCCATTCATTAGCT+CGG | - | chr3_2:73363778-73363797 | None:intergenic | 40.0% | |
| ! | TGAGATTTTACCCTTCTAGG+TGG | + | chr3_2:73363986-73364005 | Msa0423510:intron | 40.0% |
| ATTTCTGCATCCTGACATTG+TGG | + | chr3_2:73364020-73364039 | Msa0423510:CDS | 40.0% | |
| CAAGTGCAGGTACTTAAAAC+TGG | + | chr3_2:73364182-73364201 | Msa0423510:intron | 40.0% | |
| !! | CCTTTATTGGGTTCTAAACC+AGG | - | chr3_2:73364237-73364256 | None:intergenic | 40.0% |
| ! | CCTGGTTTAGAACCCAATAA+AGG | + | chr3_2:73364234-73364253 | Msa0423510:CDS | 40.0% |
| AACCCAATAAAGGGTTGACA+TGG | + | chr3_2:73364244-73364263 | Msa0423510:CDS | 40.0% | |
| TGCCATGTCAACCCTTTATT+GGG | - | chr3_2:73364249-73364268 | None:intergenic | 40.0% | |
| TTGCCATGTCAACCCTTTAT+TGG | - | chr3_2:73364250-73364269 | None:intergenic | 40.0% | |
| GAACCACAAGAAACTGCTAT+GGG | - | chr3_2:73364325-73364344 | None:intergenic | 40.0% | |
| TGAACCACAAGAAACTGCTA+TGG | - | chr3_2:73364326-73364345 | None:intergenic | 40.0% | |
| ! | GATTTTTGTTAGAGTGACGG+AGG | + | chr3_2:73364391-73364410 | Msa0423510:intron | 40.0% |
| CTTGTATTATCTGGTCTACC+GGG | + | chr3_2:73364489-73364508 | Msa0423510:intron | 40.0% | |
| ATGCACAATTAGATACAGCC+CGG | - | chr3_2:73364510-73364529 | None:intergenic | 40.0% | |
| ATTCTCTGTCACATGAATGC+AGG | + | chr3_2:73364528-73364547 | Msa0423510:intron | 40.0% | |
| TTGTGTCTGGCATATGATTC+AGG | + | chr3_2:73364595-73364614 | Msa0423510:CDS | 40.0% | |
| !! | GGCATATGATTCAGGTTGAA+TGG | + | chr3_2:73364603-73364622 | Msa0423510:intron | 40.0% |
| TGCAGTTAGAAGATGTGTTG+AGG | + | chr3_2:73364755-73364774 | Msa0423510:CDS | 40.0% | |
| !!! | TGGTTTTTAGGTGGGTTTGG+AGG | - | chr3_2:73361446-73361465 | None:intergenic | 45.0% |
| ! | GTTGTGAGTTTGGAACAAGG+AGG | - | chr3_2:73361498-73361517 | None:intergenic | 45.0% |
| CAGAAGAATGGAACCTTCAC+TGG | - | chr3_2:73361570-73361589 | None:intergenic | 45.0% | |
| TGAAGGTTCCATTCTTCTGC+CGG | + | chr3_2:73361571-73361590 | Msa0423510:five_prime_UTR | 45.0% | |
| ACGTGGAAGAAGGTGAAGAA+CGG | - | chr3_2:73361609-73361628 | None:intergenic | 45.0% | |
| AAAAGAAAACCCCAGCTGAG+GGG | - | chr3_2:73361642-73361661 | None:intergenic | 45.0% | |
| GAAAAAGAAAACCCCAGCTG+AGG | - | chr3_2:73361644-73361663 | None:intergenic | 45.0% | |
| ! | GCAGCTTGCACTTTTAGCAT+TGG | - | chr3_2:73362994-73363013 | None:intergenic | 45.0% |
| TTGCAGTTCAATCTCCCATC+TGG | + | chr3_2:73363022-73363041 | Msa0423510:intron | 45.0% | |
| TGGGTTCCATCAAATCCAAG+AGG | + | chr3_2:73363354-73363373 | Msa0423510:CDS | 45.0% | |
| TCTGCTCCTCTTGGATTTGA+TGG | - | chr3_2:73363363-73363382 | None:intergenic | 45.0% | |
| GGTAAACTTTCTGCTCCTCT+TGG | - | chr3_2:73363372-73363391 | None:intergenic | 45.0% | |
| ! | GTGAAGGTCACAAGGTACTT+TGG | - | chr3_2:73363584-73363603 | None:intergenic | 45.0% |
| TACCTTGTGACCTTCACTGT+TGG | + | chr3_2:73363587-73363606 | Msa0423510:CDS | 45.0% | |
| ATGATGGCCGAGCTAATGAA+TGG | + | chr3_2:73363768-73363787 | Msa0423510:CDS | 45.0% | |
| TGATGGCCGAGCTAATGAAT+GGG | + | chr3_2:73363769-73363788 | Msa0423510:CDS | 45.0% | |
| GTGCTCGCAAACAGACTAAA+TGG | + | chr3_2:73363828-73363847 | Msa0423510:CDS | 45.0% | |
| GCTTAGCATACCACCTAGAA+GGG | - | chr3_2:73363999-73364018 | None:intergenic | 45.0% | |
| !! | TCATATGGTGCCACAATGTC+AGG | - | chr3_2:73364033-73364052 | None:intergenic | 45.0% |
| ! | ACCTCTGTCATTTCAAGTGC+AGG | + | chr3_2:73364169-73364188 | Msa0423510:intron | 45.0% |
| ACCTGCACTTGAAATGACAG+AGG | - | chr3_2:73364173-73364192 | None:intergenic | 45.0% | |
| AGTCCCATAGCAGTTTCTTG+TGG | + | chr3_2:73364319-73364338 | Msa0423510:intron | 45.0% | |
| CTTGGCATTGCAGAATGACT+TGG | + | chr3_2:73364710-73364729 | Msa0423510:intron | 45.0% | |
| !! | TTGCAGAATGACTTGGTCCA+TGG | + | chr3_2:73364717-73364736 | Msa0423510:intron | 45.0% |
| !! | AGAATGACTTGGTCCATGGA+TGG | + | chr3_2:73364721-73364740 | Msa0423510:intron | 45.0% |
| !! | GAATGACTTGGTCCATGGAT+GGG | + | chr3_2:73364722-73364741 | Msa0423510:intron | 45.0% |
| !! | AATGACTTGGTCCATGGATG+GGG | + | chr3_2:73364723-73364742 | Msa0423510:CDS | 45.0% |
| CAAAATCAAGTCCCCATCCA+TGG | - | chr3_2:73364737-73364756 | None:intergenic | 45.0% | |
| ! | GAGTTTGGAACAAGGAGGGA+GGG | - | chr3_2:73361493-73361512 | None:intergenic | 50.0% |
| ! | TGAGTTTGGAACAAGGAGGG+AGG | - | chr3_2:73361494-73361513 | None:intergenic | 50.0% |
| TTATAGACCGCGCCTTCTAG+AGG | + | chr3_2:73362211-73362230 | Msa0423510:intron | 50.0% | |
| !! | AAAGTGAGAGCGCCTCTAGA+AGG | - | chr3_2:73362226-73362245 | None:intergenic | 50.0% |
| ! | CACAAAGGTACGCCGTAAAG+AGG | - | chr3_2:73362932-73362951 | None:intergenic | 50.0% |
| GGAGCAGAAAGTTTACCTCC+CGG | + | chr3_2:73363375-73363394 | Msa0423510:CDS | 50.0% | |
| GACTCAGCTTCAACAATGCC+GGG | - | chr3_2:73363396-73363415 | None:intergenic | 50.0% | |
| CGACTCAGCTTCAACAATGC+CGG | - | chr3_2:73363397-73363416 | None:intergenic | 50.0% | |
| CGGCATTGTTGAAGCTGAGT+CGG | + | chr3_2:73363395-73363414 | Msa0423510:CDS | 50.0% | |
| AGCCAACAGTGAAGGTCACA+AGG | - | chr3_2:73363592-73363611 | None:intergenic | 50.0% | |
| CGCTTAGCATACCACCTAGA+AGG | - | chr3_2:73364000-73364019 | None:intergenic | 50.0% | |
| AACCAGGCTGTGAAATCTCC+AGG | - | chr3_2:73364221-73364240 | None:intergenic | 50.0% | |
| ! | TAGAGTGACGGAGGAGAAAC+CGG | + | chr3_2:73364400-73364419 | Msa0423510:intron | 50.0% |
| ACAAGGAGGTAAATGGGGGT+CGG | - | chr3_2:73364435-73364454 | None:intergenic | 50.0% | |
| CTGCACAAGGAGGTAAATGG+GGG | - | chr3_2:73364439-73364458 | None:intergenic | 50.0% | |
| GCTGCACAAGGAGGTAAATG+GGG | - | chr3_2:73364440-73364459 | None:intergenic | 50.0% | |
| CGCTGCACAAGGAGGTAAAT+GGG | - | chr3_2:73364441-73364460 | None:intergenic | 50.0% | |
| ACGCTGCACAAGGAGGTAAA+TGG | - | chr3_2:73364442-73364461 | None:intergenic | 50.0% | |
| GTTACTTACGCTGCACAAGG+AGG | - | chr3_2:73364449-73364468 | None:intergenic | 50.0% | |
| GCAGTTACTTACGCTGCACA+AGG | - | chr3_2:73364452-73364471 | None:intergenic | 50.0% | |
| TGTGCAGCGTAAGTAACTGC+CGG | + | chr3_2:73364452-73364471 | Msa0423510:intron | 50.0% | |
| CATGCTTCTCGCGAGAATAC+TGG | - | chr3_2:73364572-73364591 | None:intergenic | 50.0% | |
| CAGTATTCTCGCGAGAAGCA+TGG | + | chr3_2:73364570-73364589 | Msa0423510:CDS | 50.0% | |
| TTACAGCATGGTCCTAGCAG+CGG | + | chr3_2:73364829-73364848 | Msa0423510:three_prime_UTR | 50.0% | |
| TGTCGGAGGAACGTGGAAGA+AGG | - | chr3_2:73361619-73361638 | None:intergenic | 55.0% | |
| AAATGGGGACCGTTACTCGC+AGG | + | chr3_2:73362657-73362676 | Msa0423510:exon | 55.0% | |
| TCGAGGGAAGCAAGCCAGAT+GGG | - | chr3_2:73363039-73363058 | None:intergenic | 55.0% | |
| ATCGAGGGAAGCAAGCCAGA+TGG | - | chr3_2:73363040-73363059 | None:intergenic | 55.0% | |
| GATATACAGGCCGTCGTGCT+TGG | + | chr3_2:73363083-73363102 | Msa0423510:CDS | 55.0% | |
| TCAGCTTCAACAATGCCGGG+AGG | - | chr3_2:73363393-73363412 | None:intergenic | 55.0% | |
| ATTGTGGGGCAAACCCAGTG+AGG | + | chr3_2:73363434-73363453 | Msa0423510:CDS | 55.0% | |
| ! | ACTGGTGAAGAAGCATGGCC+TGG | + | chr3_2:73364200-73364219 | Msa0423510:CDS | 55.0% |
| ! | AGAGTGACGGAGGAGAAACC+GGG | + | chr3_2:73364401-73364420 | Msa0423510:intron | 55.0% |
| ! | GAGAAGCATGGCGTTGTGTC+TGG | + | chr3_2:73364582-73364601 | Msa0423510:CDS | 55.0% |
| ! | AAACCCCAGCTGAGGGGTGT+CGG | - | chr3_2:73361636-73361655 | None:intergenic | 60.0% |
| GGCCTGGAGATTTCACAGCC+TGG | + | chr3_2:73364216-73364235 | Msa0423510:CDS | 60.0% | |
| TGACGGAGGAGAAACCGGGA+TGG | + | chr3_2:73364405-73364424 | Msa0423510:CDS | 60.0% | |
| !! | TGAGGGGTGTCGGAGGAACG+TGG | - | chr3_2:73361626-73361645 | None:intergenic | 65.0% |
| TTCCTCCGACACCCCTCAGC+TGG | + | chr3_2:73361628-73361647 | Msa0423510:five_prime_UTR | 65.0% | |
| TCCTCCGACACCCCTCAGCT+GGG | + | chr3_2:73361629-73361648 | Msa0423510:five_prime_UTR | 65.0% | |
| !! | GAGAGCGCCTCTAGAAGGCG+CGG | - | chr3_2:73362221-73362240 | None:intergenic | 65.0% |
| TGGGGGTCGGAACACCATCC+CGG | - | chr3_2:73364422-73364441 | None:intergenic | 65.0% | |
| CCTCCGACACCCCTCAGCTG+GGG | + | chr3_2:73361630-73361649 | Msa0423510:five_prime_UTR | 70.0% | |
| !! | CCCCAGCTGAGGGGTGTCGG+AGG | - | chr3_2:73361633-73361652 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 73361429 | 73364858 | 73361429 | ID=Msa0423510;Name=Msa0423510 |
| chr3_2 | mRNA | 73361429 | 73364858 | 73361429 | ID=Msa0423510-mRNA-1;Parent=Msa0423510;Name=Msa0423510-mRNA-1;_AED=0.17;_eAED=0.17;_QI=418|1|1|1|0.90|0.83|12|73|326 |
| chr3_2 | exon | 73361429 | 73361717 | 73361429 | ID=Msa0423510-mRNA-1:exon:18246;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73362530 | 73362678 | 73362530 | ID=Msa0423510-mRNA-1:exon:18247;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73362796 | 73362907 | 73362796 | ID=Msa0423510-mRNA-1:exon:18248;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73363028 | 73363168 | 73363028 | ID=Msa0423510-mRNA-1:exon:18249;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73363351 | 73363455 | 73363351 | ID=Msa0423510-mRNA-1:exon:18250;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73363566 | 73363649 | 73363566 | ID=Msa0423510-mRNA-1:exon:18251;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73363734 | 73363849 | 73363734 | ID=Msa0423510-mRNA-1:exon:18252;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73364005 | 73364106 | 73364005 | ID=Msa0423510-mRNA-1:exon:18253;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73364191 | 73364304 | 73364191 | ID=Msa0423510-mRNA-1:exon:18254;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73364403 | 73364459 | 73364403 | ID=Msa0423510-mRNA-1:exon:18255;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73364550 | 73364616 | 73364550 | ID=Msa0423510-mRNA-1:exon:18256;Parent=Msa0423510-mRNA-1 |
| chr3_2 | exon | 73364723 | 73364858 | 73364723 | ID=Msa0423510-mRNA-1:exon:18257;Parent=Msa0423510-mRNA-1 |
| chr3_2 | five_prime_UTR | 73361429 | 73361717 | 73361429 | ID=Msa0423510-mRNA-1:five_prime_utr;Parent=Msa0423510-mRNA-1 |
| chr3_2 | five_prime_UTR | 73362530 | 73362658 | 73362530 | ID=Msa0423510-mRNA-1:five_prime_utr;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73362659 | 73362678 | 73362659 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73362796 | 73362907 | 73362796 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73363028 | 73363168 | 73363028 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73363351 | 73363455 | 73363351 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73363566 | 73363649 | 73363566 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73363734 | 73363849 | 73363734 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73364005 | 73364106 | 73364005 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73364191 | 73364304 | 73364191 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73364403 | 73364459 | 73364403 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73364550 | 73364616 | 73364550 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | CDS | 73364723 | 73364785 | 73364723 | ID=Msa0423510-mRNA-1:cds;Parent=Msa0423510-mRNA-1 |
| chr3_2 | three_prime_UTR | 73364786 | 73364858 | 73364786 | ID=Msa0423510-mRNA-1:three_prime_utr;Parent=Msa0423510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
