Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422700 | XP_003601902.1 | 99.140 | 349 | 3 | 0 | 1 | 349 | 1 | 349 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422700 | G7J360 | 99.140 | 349 | 3 | 0 | 1 | 349 | 1 | 349 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194440 | Msa0422700 | 0.824525 | 7.700264e-54 | -8.615850e-47 |
| Msa0369920 | Msa0422700 | 0.806216 | 9.160661e-50 | -8.615850e-47 |
| Msa0371950 | Msa0422700 | 0.811779 | 5.901674e-51 | -8.615850e-47 |
| Msa0417330 | Msa0422700 | 0.826374 | 2.810037e-54 | -8.615850e-47 |
| Msa0422700 | Msa0423510 | 0.929229 | 9.380494e-93 | -8.615850e-47 |
| Msa0422700 | Msa0455760 | 0.817255 | 3.625071e-52 | -8.615850e-47 |
| Msa0422700 | Msa0468890 | 0.806952 | 6.407531e-50 | -8.615850e-47 |
| Msa0422700 | Msa0485490 | 0.807833 | 4.166178e-50 | -8.615850e-47 |
| Msa0422700 | Msa0581400 | 0.808515 | 2.982537e-50 | -8.615850e-47 |
| Msa0422700 | Msa0797250 | 0.803824 | 2.898307e-49 | -8.615850e-47 |
| Msa0422700 | Msa1063400 | 0.843985 | 1.000318e-58 | -8.615850e-47 |
| Msa0422700 | Msa1076960 | 0.800042 | 1.735070e-48 | -8.615850e-47 |
| Msa0422700 | Msa1077130 | 0.803450 | 3.465400e-49 | -8.615850e-47 |
| Msa0422700 | Msa1188180 | 0.809896 | 1.508209e-50 | -8.615850e-47 |
| Msa0422700 | Msa1291450 | 0.801386 | 9.226406e-49 | -8.615850e-47 |
| Msa0422700 | Msa1338400 | 0.805705 | 1.173427e-49 | -8.615850e-47 |
| Msa0422700 | Msa1355180 | 0.808840 | 2.541899e-50 | -8.615850e-47 |
| Msa0422700 | Msa1369920 | -0.820566 | 6.408933e-53 | -8.615850e-47 |
| Msa0422700 | Msa1419840 | 0.813061 | 3.096491e-51 | -8.615850e-47 |
| Msa0422700 | Msa1430550 | 0.802568 | 5.275580e-49 | -8.615850e-47 |
| Msa0422700 | Msa1454430 | 0.815205 | 1.041611e-51 | -8.615850e-47 |
| Msa0271550 | Msa0422700 | 0.800850 | 1.187884e-48 | -8.615850e-47 |
| Msa0290760 | Msa0422700 | 0.802399 | 5.715498e-49 | -8.615850e-47 |
| Msa0314070 | Msa0422700 | 0.825915 | 3.612000e-54 | -8.615850e-47 |
| Msa0326110 | Msa0422700 | 0.801270 | 9.744886e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422700 | MtrunA17_Chr3g0123571 | 99.140 | 349 | 3 | 0 | 1 | 349 | 1 | 349 | 0.0 | 719 |
| Msa0422700 | MtrunA17_Chr8g0381601 | 79.943 | 349 | 69 | 1 | 1 | 349 | 1 | 348 | 0.0 | 599 |
| Msa0422700 | MtrunA17_Chr8g0381611 | 75.510 | 343 | 80 | 1 | 7 | 349 | 2 | 340 | 0.0 | 526 |
| Msa0422700 | MtrunA17_Chr7g0227041 | 71.067 | 356 | 96 | 2 | 1 | 349 | 1 | 356 | 0.0 | 521 |
| Msa0422700 | MtrunA17_Chr2g0326801 | 67.143 | 350 | 109 | 3 | 1 | 349 | 1 | 345 | 9.86e-179 | 501 |
| Msa0422700 | MtrunA17_Chr4g0028891 | 62.873 | 369 | 93 | 3 | 25 | 349 | 1 | 369 | 7.48e-169 | 476 |
| Msa0422700 | MtrunA17_Chr2g0281421 | 51.938 | 258 | 115 | 6 | 102 | 350 | 78 | 335 | 5.86e-88 | 270 |
| Msa0422700 | MtrunA17_Chr4g0047961 | 50.593 | 253 | 118 | 6 | 102 | 347 | 60 | 312 | 5.41e-85 | 261 |
| Msa0422700 | MtrunA17_Chr1g0189401 | 49.248 | 266 | 122 | 6 | 98 | 350 | 75 | 340 | 4.53e-83 | 257 |
| Msa0422700 | MtrunA17_Chr2g0276851 | 45.878 | 279 | 143 | 6 | 82 | 352 | 60 | 338 | 4.66e-81 | 252 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422700 | AT1G67850.4 | 76.106 | 339 | 72 | 2 | 17 | 349 | 1 | 336 | 0.0 | 543 |
| Msa0422700 | AT1G67850.6 | 76.106 | 339 | 72 | 2 | 17 | 349 | 17 | 352 | 0.0 | 542 |
| Msa0422700 | AT1G67850.7 | 76.106 | 339 | 72 | 2 | 17 | 349 | 17 | 352 | 0.0 | 542 |
| Msa0422700 | AT1G67850.1 | 76.106 | 339 | 72 | 2 | 17 | 349 | 17 | 352 | 0.0 | 542 |
| Msa0422700 | AT1G67850.3 | 76.106 | 339 | 72 | 2 | 17 | 349 | 17 | 352 | 0.0 | 542 |
| Msa0422700 | AT1G67850.2 | 76.106 | 339 | 72 | 2 | 17 | 349 | 17 | 352 | 0.0 | 542 |
| Msa0422700 | AT1G67850.5 | 76.106 | 339 | 72 | 2 | 17 | 349 | 17 | 352 | 0.0 | 542 |
| Msa0422700 | AT3G27470.2 | 72.414 | 348 | 86 | 4 | 11 | 349 | 2 | 348 | 0.0 | 537 |
| Msa0422700 | AT3G27470.1 | 72.414 | 348 | 86 | 4 | 11 | 349 | 2 | 348 | 0.0 | 537 |
| Msa0422700 | AT3G27470.4 | 72.414 | 348 | 86 | 4 | 11 | 349 | 2 | 348 | 0.0 | 537 |
| Msa0422700 | AT3G27470.3 | 72.414 | 348 | 86 | 4 | 11 | 349 | 2 | 348 | 0.0 | 537 |
| Msa0422700 | AT3G27470.5 | 72.414 | 348 | 86 | 4 | 11 | 349 | 2 | 348 | 0.0 | 536 |
| Msa0422700 | AT1G13000.2 | 67.816 | 348 | 107 | 2 | 6 | 349 | 10 | 356 | 0.0 | 519 |
| Msa0422700 | AT1G13000.5 | 67.816 | 348 | 107 | 2 | 6 | 349 | 10 | 356 | 0.0 | 519 |
| Msa0422700 | AT1G13000.4 | 67.816 | 348 | 107 | 2 | 6 | 349 | 10 | 356 | 0.0 | 519 |
| Msa0422700 | AT1G13000.1 | 67.816 | 348 | 107 | 2 | 6 | 349 | 10 | 356 | 0.0 | 519 |
| Msa0422700 | AT2G28310.2 | 68.195 | 349 | 94 | 2 | 1 | 349 | 1 | 332 | 0.0 | 510 |
| Msa0422700 | AT2G28310.1 | 68.195 | 349 | 94 | 2 | 1 | 349 | 1 | 332 | 0.0 | 510 |
| Msa0422700 | AT2G28310.3 | 68.195 | 349 | 94 | 2 | 1 | 349 | 1 | 332 | 0.0 | 510 |
| Msa0422700 | AT3G26440.5 | 68.986 | 345 | 99 | 3 | 6 | 349 | 33 | 370 | 0.0 | 509 |
| Msa0422700 | AT3G26440.6 | 68.986 | 345 | 99 | 3 | 6 | 349 | 33 | 370 | 0.0 | 509 |
| Msa0422700 | AT1G08040.2 | 71.429 | 350 | 88 | 3 | 1 | 349 | 1 | 339 | 0.0 | 508 |
| Msa0422700 | AT1G08040.4 | 71.429 | 350 | 88 | 3 | 1 | 349 | 1 | 339 | 0.0 | 508 |
| Msa0422700 | AT1G08040.1 | 71.429 | 350 | 88 | 3 | 1 | 349 | 1 | 339 | 0.0 | 508 |
| Msa0422700 | AT3G26440.1 | 68.986 | 345 | 99 | 3 | 6 | 349 | 10 | 347 | 0.0 | 508 |
| Msa0422700 | AT3G26440.2 | 68.986 | 345 | 99 | 3 | 6 | 349 | 10 | 347 | 0.0 | 508 |
| Msa0422700 | AT3G26440.3 | 68.986 | 345 | 99 | 3 | 6 | 349 | 10 | 347 | 0.0 | 507 |
| Msa0422700 | AT1G08040.3 | 71.143 | 350 | 85 | 4 | 1 | 349 | 1 | 335 | 6.93e-180 | 503 |
| Msa0422700 | AT3G26440.4 | 66.763 | 346 | 81 | 4 | 6 | 349 | 10 | 323 | 5.48e-171 | 481 |
| Msa0422700 | AT1G13000.3 | 66.871 | 326 | 103 | 2 | 6 | 327 | 10 | 334 | 5.16e-169 | 474 |
| Msa0422700 | AT1G24570.2 | 66.269 | 335 | 95 | 4 | 17 | 349 | 19 | 337 | 2.15e-162 | 459 |
| Msa0422700 | AT1G24570.1 | 63.881 | 335 | 96 | 5 | 17 | 349 | 19 | 330 | 7.13e-153 | 435 |
| Msa0422700 | AT4G12840.2 | 52.918 | 257 | 111 | 7 | 98 | 347 | 76 | 329 | 4.39e-90 | 276 |
| Msa0422700 | AT4G12840.1 | 52.918 | 257 | 111 | 7 | 98 | 347 | 76 | 329 | 5.00e-90 | 276 |
| Msa0422700 | AT1G11170.3 | 50.588 | 255 | 117 | 6 | 102 | 347 | 83 | 337 | 1.25e-83 | 258 |
| Msa0422700 | AT1G11170.4 | 50.588 | 255 | 117 | 6 | 102 | 347 | 83 | 337 | 1.30e-83 | 258 |
| Msa0422700 | AT1G11170.8 | 50.588 | 255 | 117 | 6 | 102 | 347 | 83 | 337 | 1.30e-83 | 258 |
| Msa0422700 | AT1G11170.1 | 50.588 | 255 | 117 | 6 | 102 | 347 | 83 | 337 | 5.72e-83 | 259 |
| Msa0422700 | AT1G11170.6 | 50.588 | 255 | 117 | 6 | 102 | 347 | 83 | 337 | 5.72e-83 | 259 |
| Msa0422700 | AT1G11170.5 | 50.588 | 255 | 117 | 6 | 102 | 347 | 83 | 337 | 5.72e-83 | 259 |
| Msa0422700 | AT1G11170.7 | 50.588 | 255 | 117 | 6 | 102 | 347 | 83 | 337 | 5.72e-83 | 259 |
| Msa0422700 | AT4G12840.3 | 52.941 | 238 | 102 | 7 | 117 | 347 | 1 | 235 | 1.23e-82 | 253 |
| Msa0422700 | AT1G61240.8 | 50.588 | 255 | 117 | 6 | 102 | 347 | 13 | 267 | 4.39e-82 | 254 |
| Msa0422700 | AT1G61240.7 | 50.588 | 255 | 117 | 6 | 102 | 347 | 80 | 334 | 8.64e-82 | 253 |
| Msa0422700 | AT1G61240.4 | 50.588 | 255 | 117 | 6 | 102 | 347 | 80 | 334 | 3.32e-81 | 254 |
| Msa0422700 | AT1G61240.5 | 50.588 | 255 | 117 | 6 | 102 | 347 | 80 | 334 | 3.32e-81 | 254 |
| Msa0422700 | AT1G61240.6 | 50.588 | 255 | 117 | 6 | 102 | 347 | 80 | 334 | 3.32e-81 | 254 |
| Msa0422700 | AT1G61240.2 | 50.588 | 255 | 117 | 6 | 102 | 347 | 80 | 334 | 3.32e-81 | 254 |
| Msa0422700 | AT1G61240.1 | 50.588 | 255 | 117 | 6 | 102 | 347 | 80 | 334 | 3.32e-81 | 254 |
| Msa0422700 | AT1G61240.3 | 50.588 | 255 | 117 | 6 | 102 | 347 | 80 | 334 | 3.32e-81 | 254 |
| Msa0422700 | AT4G18530.1 | 47.170 | 265 | 122 | 7 | 96 | 347 | 69 | 328 | 5.04e-81 | 252 |
| Msa0422700 | AT4G18530.3 | 47.170 | 265 | 122 | 7 | 96 | 347 | 64 | 323 | 5.17e-81 | 252 |
| Msa0422700 | AT1G11170.2 | 51.082 | 231 | 105 | 5 | 102 | 324 | 83 | 313 | 7.00e-75 | 235 |
| Msa0422700 | AT4G18530.2 | 46.473 | 241 | 112 | 6 | 96 | 324 | 69 | 304 | 1.87e-72 | 228 |
| Msa0422700 | AT2G25905.1 | 48.485 | 231 | 96 | 5 | 17 | 246 | 19 | 227 | 1.20e-64 | 205 |
| Msa0422700 | AT1G11170.9 | 51.176 | 170 | 78 | 3 | 102 | 266 | 83 | 252 | 2.88e-52 | 174 |
Find 118 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATGACTATATATTTATA+TGG | 0.213074 | 3_2:-72132556 | Msa0422700:CDS |
| TTGCCATGTCAACCCTTTAT+TGG | 0.257735 | 3_2:+72132355 | None:intergenic |
| ACGCTGCACAAGGAGGTAAA+TGG | 0.258388 | 3_2:+72132163 | None:intergenic |
| CAGGGAAGTTCCGAAATAAA+TGG | 0.282809 | 3_2:-72133962 | Msa0422700:exon |
| TCTGCTCCTCTTGGATTTGA+TGG | 0.289728 | 3_2:+72133242 | None:intergenic |
| TGCCATGTCAACCCTTTATT+GGG | 0.303558 | 3_2:+72132356 | None:intergenic |
| AAGCATATTTGTTTCTTATA+CGG | 0.306033 | 3_2:-72134050 | Msa0422700:five_prime_UTR |
| CCTGGTTTAGAACCCAATAA+AGG | 0.308435 | 3_2:-72132368 | Msa0422700:CDS |
| TTGTGTCTGGCATATGATTC+AGG | 0.313499 | 3_2:-72132007 | Msa0422700:intron |
| GCTCTCTTTGTTGTTGAGTT+TGG | 0.317420 | 3_2:+72135153 | None:intergenic |
| ATGCAGGTTTGTTGAGATTA+TGG | 0.320597 | 3_2:-72132058 | Msa0422700:intron |
| GTTGTGTTGTGTTGTGAGTT+TGG | 0.330989 | 3_2:+72135111 | None:intergenic |
| TTCCTCCGACACCCCTCAGC+TGG | 0.337553 | 3_2:-72134988 | Msa0422700:five_prime_UTR |
| GTAACGGTCCCCATTTATTT+CGG | 0.349465 | 3_2:+72133952 | None:intergenic |
| CGCTGCACAAGGAGGTAAAT+GGG | 0.354183 | 3_2:+72132164 | None:intergenic |
| TATTGATGCAGCCGTGAAAA+AGG | 0.363474 | 3_2:-72132974 | Msa0422700:intron |
| ATCCTTCTATTTCATTATGA+TGG | 0.372976 | 3_2:-72132850 | Msa0422700:CDS |
| GGTAAACTTTCTGCTCCTCT+TGG | 0.388659 | 3_2:+72133233 | None:intergenic |
| GGCCATCATAATGAAATAGA+AGG | 0.390690 | 3_2:+72132848 | None:intergenic |
| GAGAAGCATGGCGTTGTGTC+TGG | 0.390721 | 3_2:-72132020 | Msa0422700:CDS |
| CATGCTTCTCGCGAGAATAC+TGG | 0.396635 | 3_2:+72132033 | None:intergenic |
| CAAGTGCAGGTACTTAAAAC+TGG | 0.397978 | 3_2:-72132420 | Msa0422700:intron |
| GTGCTCGCAAACAGACTAAA+TGG | 0.402665 | 3_2:-72132774 | Msa0422700:intron |
| CATTTATTTCGGAACTTCCC+TGG | 0.403522 | 3_2:+72133963 | None:intergenic |
| TCCTCCGACACCCCTCAGCT+GGG | 0.405252 | 3_2:-72134987 | Msa0422700:five_prime_UTR |
| AATAAGCCTCATAATTTCAC+TGG | 0.409734 | 3_2:+72133789 | None:intergenic |
| TTGCAGTTCAATCTCCCATC+TGG | 0.411688 | 3_2:-72133580 | Msa0422700:intron |
| GTGTCATTTGATAAGTGATT+TGG | 0.412581 | 3_2:+72133463 | None:intergenic |
| TAGAGTGACGGAGGAGAAAC+CGG | 0.412831 | 3_2:-72132202 | Msa0422700:CDS |
| TGTTCCCACACTAGGAAATC+AGG | 0.418886 | 3_2:-72131613 | Msa0422700:intron |
| TTTATTGGATGCAGTCCTAA+TGG | 0.423254 | 3_2:-72133820 | Msa0422700:intron |
| AGGGAAGTTCCGAAATAAAT+GGG | 0.425120 | 3_2:-72133961 | Msa0422700:exon |
| CAGAAGAATGGAACCTTCAC+TGG | 0.430195 | 3_2:+72135049 | None:intergenic |
| CTGGTTTAGAACCCAATAAA+GGG | 0.442489 | 3_2:-72132367 | Msa0422700:CDS |
| ATTTATATGGGATGAAGACT+TGG | 0.443996 | 3_2:-72132543 | Msa0422700:CDS |
| TACATTGAAGAAAGATATAC+AGG | 0.451027 | 3_2:-72133532 | Msa0422700:CDS |
| CATATAAATATATAGTCATA+TGG | 0.467190 | 3_2:+72132557 | None:intergenic |
| TCATATGGTGCCACAATGTC+AGG | 0.467804 | 3_2:+72132572 | None:intergenic |
| TTCACCATTCATCAACTAGA+AGG | 0.471634 | 3_2:+72134021 | None:intergenic |
| AAAATTGTAGAAGAAGAAGA+AGG | 0.473103 | 3_2:-72135202 | None:intergenic |
| CTTGGCATTGCAGAATGACT+TGG | 0.475324 | 3_2:-72131892 | Msa0422700:intron |
| TTGGAGTTGTCGATGCTCAA+TGG | 0.480149 | 3_2:-72131650 | Msa0422700:CDS |
| TAGCCTGCACATGAGAAGAT+TGG | 0.483409 | 3_2:-72131669 | Msa0422700:CDS |
| GTGAAGGTCACAAGGTACTT+TGG | 0.484389 | 3_2:+72133021 | None:intergenic |
| GAAAACCCAGTGAAATTATG+AGG | 0.490987 | 3_2:-72133795 | Msa0422700:CDS |
| ACTGGTGAAGAAGCATGGCC+TGG | 0.491574 | 3_2:-72132402 | Msa0422700:CDS |
| CGACTCAGCTTCAACAATGC+CGG | 0.491664 | 3_2:+72133208 | None:intergenic |
| GGCCTGGAGATTTCACAGCC+TGG | 0.496813 | 3_2:-72132386 | Msa0422700:CDS |
| ATGATGGCCGAGCTAATGAA+TGG | 0.499945 | 3_2:-72132834 | Msa0422700:CDS |
| CCTTTATTGGGTTCTAAACC+AGG | 0.501314 | 3_2:+72132368 | None:intergenic |
| TGAAGGTTCCATTCTTCTGC+CGG | 0.503865 | 3_2:-72135045 | Msa0422700:five_prime_UTR |
| GATATACAGGCCGTCGTGCT+TGG | 0.507431 | 3_2:-72133519 | Msa0422700:CDS |
| CTTAAGATACACACCTCACT+AGG | 0.508768 | 3_2:+72133155 | None:intergenic |
| GACTCAGCTTCAACAATGCC+GGG | 0.509378 | 3_2:+72133209 | None:intergenic |
| ACTCCAATCTTCTCATGTGC+AGG | 0.516783 | 3_2:+72131666 | None:intergenic |
| ATATGACTATATATTTATAT+GGG | 0.518689 | 3_2:-72132555 | Msa0422700:CDS |
| CGGCATTGTTGAAGCTGAGT+CGG | 0.519485 | 3_2:-72133207 | Msa0422700:CDS |
| AATGACTTGGTCCATGGATG+GGG | 0.521935 | 3_2:-72131879 | Msa0422700:CDS |
| TGTCGGAGGAACGTGGAAGA+AGG | 0.523573 | 3_2:+72135000 | None:intergenic |
| TTTACCTGATTTCCTAGTGT+GGG | 0.526887 | 3_2:+72131609 | None:intergenic |
| AACCAGGCTGTGAAATCTCC+AGG | 0.532638 | 3_2:+72132384 | None:intergenic |
| CAAAATCAAGTCCCCATCCA+TGG | 0.537352 | 3_2:+72131868 | None:intergenic |
| GATACCTTCTAGTTGATGAA+TGG | 0.538994 | 3_2:-72134025 | Msa0422700:five_prime_UTR |
| TCCAACATTGTCATTAACAA+AGG | 0.539794 | 3_2:-72133716 | Msa0422700:intron |
| ATTTACCTGATTTCCTAGTG+TGG | 0.551215 | 3_2:+72131608 | None:intergenic |
| AAACCCCAGCTGAGGGGTGT+CGG | 0.552127 | 3_2:+72134983 | None:intergenic |
| AAATTGTAGAAGAAGAAGAA+GGG | 0.552455 | 3_2:-72135201 | None:intergenic |
| ACCTTTGTTAATGACAATGT+TGG | 0.557482 | 3_2:+72133715 | None:intergenic |
| GAATGACTTGGTCCATGGAT+GGG | 0.558080 | 3_2:-72131880 | Msa0422700:CDS |
| CCTCCGACACCCCTCAGCTG+GGG | 0.559406 | 3_2:-72134986 | Msa0422700:five_prime_UTR |
| TTGCAGAATGACTTGGTCCA+TGG | 0.561994 | 3_2:-72131885 | Msa0422700:intron |
| TGCAGTTAGAAGATGTGTTG+AGG | 0.565260 | 3_2:-72131847 | Msa0422700:intron |
| TCGAGGGAAGCAAGCCAGAT+GGG | 0.567592 | 3_2:+72133566 | None:intergenic |
| AAATGGGGACCGTTACTCGC+AGG | 0.570066 | 3_2:-72133945 | Msa0422700:intron |
| CACCAAGGTGTTCCCACACT+AGG | 0.571590 | 3_2:-72131621 | Msa0422700:CDS |
| TGAGTTTGAATGGTCAAAGA+AGG | 0.573343 | 3_2:-72132809 | Msa0422700:CDS |
| CAGTATTCTCGCGAGAAGCA+TGG | 0.573602 | 3_2:-72132032 | Msa0422700:CDS |
| AGAATGACTTGGTCCATGGA+TGG | 0.574042 | 3_2:-72131881 | Msa0422700:CDS |
| TACCTTGTGACCTTCACTGT+TGG | 0.581078 | 3_2:-72133015 | Msa0422700:CDS |
| ACTCATCCCATTCATTAGCT+CGG | 0.581632 | 3_2:+72132827 | None:intergenic |
| ATGAATGGGATGAGTTTGAA+TGG | 0.582732 | 3_2:-72132819 | Msa0422700:CDS |
| CATTTCATAGCCAACAGTGA+AGG | 0.584725 | 3_2:+72133005 | None:intergenic |
| ATCGAGGGAAGCAAGCCAGA+TGG | 0.584820 | 3_2:+72133565 | None:intergenic |
| TTTATATGGGATGAAGACTT+GGG | 0.588977 | 3_2:-72132542 | Msa0422700:CDS |
| CCCCAGCTGAGGGGTGTCGG+AGG | 0.589695 | 3_2:+72134986 | None:intergenic |
| ATAAGCCTCATAATTTCACT+GGG | 0.590143 | 3_2:+72133790 | None:intergenic |
| AGAGTGACGGAGGAGAAACC+GGG | 0.592731 | 3_2:-72132201 | Msa0422700:CDS |
| TGTGTTGTGAGTTTGGAACA+AGG | 0.593068 | 3_2:+72135118 | None:intergenic |
| ATTATCAGACCTGCGAGTAA+CGG | 0.593281 | 3_2:+72133936 | None:intergenic |
| GGAGCAGAAAGTTTACCTCC+CGG | 0.596329 | 3_2:-72133227 | Msa0422700:CDS |
| TTGTGAGTTTGGAACAAGGA+GGG | 0.598179 | 3_2:+72135122 | None:intergenic |
| TTAAAACTGGTGAAGAAGCA+TGG | 0.599811 | 3_2:-72132407 | Msa0422700:CDS |
| AGCCAACAGTGAAGGTCACA+AGG | 0.602730 | 3_2:+72133013 | None:intergenic |
| CTTATCAAATGACACATCAA+AGG | 0.609949 | 3_2:-72133455 | Msa0422700:intron |
| GAGTTTGGAACAAGGAGGGA+GGG | 0.611388 | 3_2:+72135126 | None:intergenic |
| AACCCAATAAAGGGTTGACA+TGG | 0.618140 | 3_2:-72132358 | Msa0422700:CDS |
| GCTTCCTATAAAACCAGTGA+AGG | 0.619411 | 3_2:-72135062 | Msa0422700:five_prime_UTR |
| ATTTCTGCATCCTGACATTG+TGG | 0.619915 | 3_2:-72132582 | Msa0422700:CDS |
| TGATGGCCGAGCTAATGAAT+GGG | 0.623524 | 3_2:-72132833 | Msa0422700:CDS |
| TGAGTTTGGAACAAGGAGGG+AGG | 0.624086 | 3_2:+72135125 | None:intergenic |
| GCTGCACAAGGAGGTAAATG+GGG | 0.631284 | 3_2:+72132165 | None:intergenic |
| ATTGTGGGGCAAACCTAGTG+AGG | 0.638834 | 3_2:-72133168 | Msa0422700:intron |
| GCAGTTACTTACGCTGCACA+AGG | 0.640937 | 3_2:+72132153 | None:intergenic |
| AATGTAAGAGAGATCAATCG+AGG | 0.643208 | 3_2:+72133549 | None:intergenic |
| ACGTGGAAGAAGGTGAAGAA+CGG | 0.648166 | 3_2:+72135010 | None:intergenic |
| TTCCTAGTGTGGGAACACCT+TGG | 0.656990 | 3_2:+72131619 | None:intergenic |
| TGAGGGGTGTCGGAGGAACG+TGG | 0.658428 | 3_2:+72134993 | None:intergenic |
| ATGTAAGAGAGATCAATCGA+GGG | 0.669290 | 3_2:+72133550 | None:intergenic |
| GGGAAGTTCCGAAATAAATG+GGG | 0.684311 | 3_2:-72133960 | Msa0422700:exon |
| TGACGGAGGAGAAACCGGGA+TGG | 0.686924 | 3_2:-72132197 | Msa0422700:CDS |
| CTGCACAAGGAGGTAAATGG+GGG | 0.692874 | 3_2:+72132166 | None:intergenic |
| AAAAGAAAACCCCAGCTGAG+GGG | 0.696223 | 3_2:+72134977 | None:intergenic |
| TGGGTTCCATCAAATCCAAG+AGG | 0.719624 | 3_2:-72133248 | Msa0422700:CDS |
| GCTCAATGGATTGTTCACCA+AGG | 0.733701 | 3_2:-72131636 | Msa0422700:CDS |
| GTTACTTACGCTGCACAAGG+AGG | 0.742418 | 3_2:+72132156 | None:intergenic |
| TTATAAAAGACCAAGCACGA+CGG | 0.744122 | 3_2:+72133509 | None:intergenic |
| TCAGCTTCAACAATGCCGGG+AGG | 0.767152 | 3_2:+72133212 | None:intergenic |
| GTTGTGAGTTTGGAACAAGG+AGG | 0.767505 | 3_2:+72135121 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTTTTATGATAAT+TGG | - | chr3_2:72131886-72131905 | Msa0422700:intron | 10.0% |
| !!! | ATATTGTTTTATATAATACT+GGG | - | chr3_2:72133308-72133327 | Msa0422700:intron | 10.0% |
| !! | ATATGACTATATATTTATAT+GGG | - | chr3_2:72134093-72134112 | Msa0422700:intron | 10.0% |
| !!! | ATCTTTAATGTTTTTTTTTT+TGG | - | chr3_2:72134177-72134196 | Msa0422700:intron | 10.0% |
| !!! | TCTTTAATGTTTTTTTTTTT+GGG | - | chr3_2:72134178-72134197 | Msa0422700:intron | 10.0% |
| !! | ATAAATTTATTCAAAGTTGA+AGG | + | chr3_2:72131810-72131829 | None:intergenic | 15.0% |
| !!! | AGTTAATGATAATCTATTTT+TGG | + | chr3_2:72131948-72131967 | None:intergenic | 15.0% |
| !!! | TTTTAGTTGTTTTTTGTTAT+TGG | - | chr3_2:72133012-72133031 | Msa0422700:CDS | 15.0% |
| !!! | GATATTGTTTTATATAATAC+TGG | - | chr3_2:72133307-72133326 | Msa0422700:intron | 15.0% |
| !! | AATATGATAACAATCAATTA+TGG | + | chr3_2:72134005-72134024 | None:intergenic | 15.0% |
| !! | CATATAAATATATAGTCATA+TGG | + | chr3_2:72134094-72134113 | None:intergenic | 15.0% |
| !! | CATATGACTATATATTTATA+TGG | - | chr3_2:72134092-72134111 | Msa0422700:intron | 15.0% |
| !! | ATCTATCAATAATAACTTGA+AGG | + | chr3_2:72131836-72131855 | None:intergenic | 20.0% |
| !!! | AATATGAATCTTTTCTTTGA+TGG | - | chr3_2:72132004-72132023 | Msa0422700:intron | 20.0% |
| !!! | ATTCTCATATTAAGGATTTT+AGG | - | chr3_2:72132416-72132435 | Msa0422700:intron | 20.0% |
| !! | AATAATTATCCCTTATTCTT+AGG | - | chr3_2:72132490-72132509 | Msa0422700:intron | 20.0% |
| !!! | AAGCATATTTGTTTCTTATA+CGG | - | chr3_2:72132598-72132617 | Msa0422700:CDS | 20.0% |
| !!! | GTGTGACAATTTTTTTTTAT+TGG | - | chr3_2:72132813-72132832 | Msa0422700:CDS | 20.0% |
| !! | TCATTGATACATAATTGATA+TGG | - | chr3_2:72133272-72133291 | Msa0422700:intron | 20.0% |
| !! | CATTGATACATAATTGATAT+GGG | - | chr3_2:72133273-72133292 | Msa0422700:intron | 20.0% |
| !! | TTTATATAATACTGGGAAAA+TGG | - | chr3_2:72133315-72133334 | Msa0422700:intron | 20.0% |
| !! | TCATTAAACAACTAATTAGT+GGG | + | chr3_2:72134700-72134719 | None:intergenic | 20.0% |
| !! | ATCATTAAACAACTAATTAG+TGG | + | chr3_2:72134701-72134720 | None:intergenic | 20.0% |
| !! | AATTACAATTGTATAACTCT+TGG | - | chr3_2:72134738-72134757 | Msa0422700:intron | 20.0% |
| ! | TATGATAATTGGTACAATTG+TGG | - | chr3_2:72131897-72131916 | Msa0422700:intron | 25.0% |
| ! | TTGCTTCAACTTATTTATGA+AGG | + | chr3_2:72132381-72132400 | None:intergenic | 25.0% |
| !!! | TAAGGATTTTAGGTGATATT+AGG | - | chr3_2:72132426-72132445 | Msa0422700:intron | 25.0% |
| ! | AAAAAAAAATTGTCACACAG+TGG | + | chr3_2:72132811-72132830 | None:intergenic | 25.0% |
| !! | ACTTTTATTGGAGTAGTTTT+TGG | - | chr3_2:72132888-72132907 | Msa0422700:intron | 25.0% |
| ! | TACATTGAAGAAAGATATAC+AGG | - | chr3_2:72133116-72133135 | Msa0422700:intron | 25.0% |
| ! | TGTAGAGAAACAACAAAATA+AGG | + | chr3_2:72133376-72133395 | None:intergenic | 25.0% |
| ! | TGTATCTTAAGACAGTTTAT+AGG | - | chr3_2:72133505-72133524 | Msa0422700:CDS | 25.0% |
| ! | GTGTAATTTATAGCCATATT+AGG | + | chr3_2:72133531-72133550 | None:intergenic | 25.0% |
| !!! | TTAACTAAGTTGACATTTTC+AGG | - | chr3_2:72133590-72133609 | Msa0422700:intron | 25.0% |
| ! | ATCCTTCTATTTCATTATGA+TGG | - | chr3_2:72133798-72133817 | Msa0422700:CDS | 25.0% |
| !!! | ATAGCAACTCACTTTTAATT+AGG | + | chr3_2:72133981-72134000 | None:intergenic | 25.0% |
| !!! | TTAGTGGGAATCTTTTAAAA+CGG | + | chr3_2:72134685-72134704 | None:intergenic | 25.0% |
| !!! | TTTCAGTTTTTTACTTTCTC+CGG | + | chr3_2:72134905-72134924 | None:intergenic | 25.0% |
| ! | NNNNNAAATGTGGGTGATAT+AGG | - | chr3_2:72135173-72135192 | Msa0422700:five_prime_UTR | 25.0% |
| !!! | TGTTGTTGAGTTTGGTTTTT+AGG | + | chr3_2:72131490-72131509 | None:intergenic | 30.0% |
| !!! | CTTAGCCTTTTGAGTTAATT+TGG | - | chr3_2:72132121-72132140 | Msa0422700:intron | 30.0% |
| ACCTACCAAATTAACTCAAA+AGG | + | chr3_2:72132129-72132148 | None:intergenic | 30.0% | |
| GCATAAGACAAATGACAATT+AGG | + | chr3_2:72132293-72132312 | None:intergenic | 30.0% | |
| ! | AATTGTCATTTGTCTTATGC+TGG | - | chr3_2:72132293-72132312 | Msa0422700:intron | 30.0% |
| TGTCTGTCATTCTCATATTA+AGG | - | chr3_2:72132408-72132427 | Msa0422700:CDS | 30.0% | |
| GAGCAAAGAATTATATCGTT+TGG | + | chr3_2:72132464-72132483 | None:intergenic | 30.0% | |
| CTTCAAACTCCTAAGAATAA+GGG | + | chr3_2:72132502-72132521 | None:intergenic | 30.0% | |
| ! | TTAGGAGTTTGAAGCATTAT+CGG | - | chr3_2:72132508-72132527 | Msa0422700:intron | 30.0% |
| !!! | TTGTTGTTTTTTTCTTCAGC+AGG | - | chr3_2:72132557-72132576 | Msa0422700:CDS | 30.0% |
| !!! | TGTTGTTTTTTTCTTCAGCA+GGG | - | chr3_2:72132558-72132577 | Msa0422700:CDS | 30.0% |
| TTGACATAAACTAGCATATG+TGG | + | chr3_2:72132780-72132799 | None:intergenic | 30.0% | |
| ATAAGCCTCATAATTTCACT+GGG | + | chr3_2:72132861-72132880 | None:intergenic | 30.0% | |
| AATAAGCCTCATAATTTCAC+TGG | + | chr3_2:72132862-72132881 | None:intergenic | 30.0% | |
| ! | CTTATTGTGACGACTTTTAT+TGG | - | chr3_2:72132876-72132895 | Msa0422700:intron | 30.0% |
| !!! | GTAGTTTTTGGTTTCTTTCT+AGG | - | chr3_2:72132900-72132919 | Msa0422700:intron | 30.0% |
| TCCAACATTGTCATTAACAA+AGG | - | chr3_2:72132932-72132951 | Msa0422700:intron | 30.0% | |
| ACCTTTGTTAATGACAATGT+TGG | + | chr3_2:72132936-72132955 | None:intergenic | 30.0% | |
| TAGTTTCTTCTTCCTCTTTA+CGG | - | chr3_2:72132963-72132982 | Msa0422700:intron | 30.0% | |
| !! | GTGTCATTTGATAAGTGATT+TGG | + | chr3_2:72133188-72133207 | None:intergenic | 30.0% |
| CTTATCAAATGACACATCAA+AGG | - | chr3_2:72133193-72133212 | Msa0422700:CDS | 30.0% | |
| GTATCCTGTCATCATTATTA+AGG | - | chr3_2:72133224-72133243 | Msa0422700:CDS | 30.0% | |
| ATGTCCTTAATAATGATGAC+AGG | + | chr3_2:72133231-72133250 | None:intergenic | 30.0% | |
| !! | TTGTTGTTTCTCTACAGATA+TGG | - | chr3_2:72133380-72133399 | Msa0422700:intron | 30.0% |
| !! | TGTTGTTTCTCTACAGATAT+GGG | - | chr3_2:72133381-72133400 | Msa0422700:intron | 30.0% |
| AAATCCTCTGTAAACAATGA+AGG | + | chr3_2:72133572-72133591 | None:intergenic | 30.0% | |
| !! | ACTAAGAAAGACCTTTTTCA+CGG | + | chr3_2:72133688-72133707 | None:intergenic | 30.0% |
| !! | ACCAGTGTGTTATTAACTTT+TGG | - | chr3_2:72133903-72133922 | Msa0422700:intron | 30.0% |
| TCCAAAAGTTAATAACACAC+TGG | + | chr3_2:72133907-72133926 | None:intergenic | 30.0% | |
| ! | TGGATGAAAGATTTTCATTG+TGG | - | chr3_2:72133923-72133942 | Msa0422700:intron | 30.0% |
| !! | ATTTGAGATTTTACCCTTCT+AGG | - | chr3_2:72134029-72134048 | Msa0422700:five_prime_UTR | 30.0% |
| ATTTATATGGGATGAAGACT+TGG | - | chr3_2:72134105-72134124 | Msa0422700:intron | 30.0% | |
| TTTATATGGGATGAAGACTT+GGG | - | chr3_2:72134106-72134125 | Msa0422700:intron | 30.0% | |
| CATATCAAATACTCACTCTT+CGG | + | chr3_2:72134149-72134168 | None:intergenic | 30.0% | |
| GAAGAGTGAGTATTTGATAT+GGG | - | chr3_2:72134148-72134167 | Msa0422700:intron | 30.0% | |
| !!! | GCGTTAACTATTGATTTTCT+TGG | - | chr3_2:72134415-72134434 | Msa0422700:intron | 30.0% |
| ! | TTGGATTTTTGTTAGAGTGA+CGG | - | chr3_2:72134434-72134453 | Msa0422700:intron | 30.0% |
| ACAAGACTAATACATTACAC+CGG | + | chr3_2:72134520-72134539 | None:intergenic | 30.0% | |
| !! | TGTATTAGTCTTGTATTGTC+TGG | - | chr3_2:72134526-72134545 | Msa0422700:intron | 30.0% |
| !! | TCATTCTTACTTTTACAGCA+TGG | - | chr3_2:72134863-72134882 | Msa0422700:intron | 30.0% |
| !!! | GTTGAGTTTGGTTTTTAGGT+GGG | + | chr3_2:72131486-72131505 | None:intergenic | 35.0% |
| !!! | TGTTGAGTTTGGTTTTTAGG+TGG | + | chr3_2:72131487-72131506 | None:intergenic | 35.0% |
| ! | AGAACGGAAGATGAATTTTC+CGG | + | chr3_2:72131625-72131644 | None:intergenic | 35.0% |
| ! | CAGATCTTCATCTCTTTTTC+TGG | - | chr3_2:72131728-72131747 | Msa0422700:intron | 35.0% |
| !! | ATCTCTTTTTCTGGTACGTT+TGG | - | chr3_2:72131737-72131756 | Msa0422700:intron | 35.0% |
| !!! | ACAATTGTGGCTGTTTTGAT+TGG | - | chr3_2:72131910-72131929 | Msa0422700:intron | 35.0% |
| ! | TGCCACATGCTTTTGTAATT+GGG | - | chr3_2:72132043-72132062 | Msa0422700:CDS | 35.0% |
| ! | ATTGGGGAGCTACTAATTTT+AGG | - | chr3_2:72132060-72132079 | Msa0422700:intron | 35.0% |
| !!! | GCCTTTTGAGTTAATTTGGT+AGG | - | chr3_2:72132125-72132144 | Msa0422700:intron | 35.0% |
| CATCATCTGCTAGCTATATT+TGG | - | chr3_2:72132196-72132215 | Msa0422700:CDS | 35.0% | |
| ! | AGCTATATTTGGTTCCTTTG+TGG | - | chr3_2:72132207-72132226 | Msa0422700:intron | 35.0% |
| TTTCCTTGAAGTAACCACAA+AGG | + | chr3_2:72132224-72132243 | None:intergenic | 35.0% | |
| ! | ATGATTAGTTCCTTTGCACA+TGG | - | chr3_2:72132338-72132357 | Msa0422700:CDS | 35.0% |
| GCTTCAAACTCCTAAGAATA+AGG | + | chr3_2:72132503-72132522 | None:intergenic | 35.0% | |
| ! | TAGGAGTTTGAAGCATTATC+GGG | - | chr3_2:72132509-72132528 | Msa0422700:intron | 35.0% |
| !!! | GTTGTTTTTTTCTTCAGCAG+GGG | - | chr3_2:72132559-72132578 | Msa0422700:CDS | 35.0% |
| !! | GATACCTTCTAGTTGATGAA+TGG | - | chr3_2:72132623-72132642 | Msa0422700:intron | 35.0% |
| TTCACCATTCATCAACTAGA+AGG | + | chr3_2:72132630-72132649 | None:intergenic | 35.0% | |
| AGGGAAGTTCCGAAATAAAT+GGG | - | chr3_2:72132687-72132706 | Msa0422700:intron | 35.0% | |
| AAAAAATTGTCACACAGTGG+TGG | + | chr3_2:72132808-72132827 | None:intergenic | 35.0% | |
| TTTATTGGATGCAGTCCTAA+TGG | - | chr3_2:72132828-72132847 | Msa0422700:CDS | 35.0% | |
| GAAAACCCAGTGAAATTATG+AGG | - | chr3_2:72132853-72132872 | Msa0422700:CDS | 35.0% | |
| AATAATCTACTGCAGCACAA+AGG | + | chr3_2:72132993-72133012 | None:intergenic | 35.0% | |
| ATGTAAGAGAGATCAATCGA+GGG | + | chr3_2:72133101-72133120 | None:intergenic | 35.0% | |
| AATGTAAGAGAGATCAATCG+AGG | + | chr3_2:72133102-72133121 | None:intergenic | 35.0% | |
| TTATAAAAGACCAAGCACGA+CGG | + | chr3_2:72133142-72133161 | None:intergenic | 35.0% | |
| ! | ACTTTTACTTGCGTAGATTG+TGG | - | chr3_2:72133464-72133483 | Msa0422700:CDS | 35.0% |
| ! | CTTTTACTTGCGTAGATTGT+GGG | - | chr3_2:72133465-72133484 | Msa0422700:CDS | 35.0% |
| ! | TTTTACTTGCGTAGATTGTG+GGG | - | chr3_2:72133466-72133485 | Msa0422700:CDS | 35.0% |
| GACAGTTTATAGGCCTAATA+TGG | - | chr3_2:72133515-72133534 | Msa0422700:CDS | 35.0% | |
| TGTAAACAATGAAGGTCAGA+AGG | + | chr3_2:72133564-72133583 | None:intergenic | 35.0% | |
| GGCCATCATAATGAAATAGA+AGG | + | chr3_2:72133803-72133822 | None:intergenic | 35.0% | |
| ATGAATGGGATGAGTTTGAA+TGG | - | chr3_2:72133829-72133848 | Msa0422700:intron | 35.0% | |
| TGAGTTTGAATGGTCAAAGA+AGG | - | chr3_2:72133839-72133858 | Msa0422700:intron | 35.0% | |
| CGAAGAGTGAGTATTTGATA+TGG | - | chr3_2:72134147-72134166 | Msa0422700:intron | 35.0% | |
| AGTGAGTATTTGATATGGGA+AGG | - | chr3_2:72134152-72134171 | Msa0422700:intron | 35.0% | |
| TTAAAACTGGTGAAGAAGCA+TGG | - | chr3_2:72134241-72134260 | Msa0422700:intron | 35.0% | |
| ! | CTGGTTTAGAACCCAATAAA+GGG | - | chr3_2:72134281-72134300 | Msa0422700:intron | 35.0% |
| TGGCAAATGACAAAAAGAAG+AGG | - | chr3_2:72134310-72134329 | Msa0422700:intron | 35.0% | |
| !! | ATGCAGGTTTGTTGAGATTA+TGG | - | chr3_2:72134590-72134609 | Msa0422700:intron | 35.0% |
| !!! | GGGAATCTTTTAAAACGGTT+AGG | + | chr3_2:72134680-72134699 | None:intergenic | 35.0% |
| TTTACCTGATTTCCTAGTGT+GGG | + | chr3_2:72135042-72135061 | None:intergenic | 35.0% | |
| ATTTACCTGATTTCCTAGTG+TGG | + | chr3_2:72135043-72135062 | None:intergenic | 35.0% | |
| !!! | GTTTGGTTTTTAGGTGGGTT+TGG | + | chr3_2:72131481-72131500 | None:intergenic | 40.0% |
| !! | GCTCTCTTTGTTGTTGAGTT+TGG | + | chr3_2:72131498-72131517 | None:intergenic | 40.0% |
| ! | TTGTGAGTTTGGAACAAGGA+GGG | + | chr3_2:72131529-72131548 | None:intergenic | 40.0% |
| ! | TGTGTTGTGAGTTTGGAACA+AGG | + | chr3_2:72131533-72131552 | None:intergenic | 40.0% |
| GTTGTGTTGTGTTGTGAGTT+TGG | + | chr3_2:72131540-72131559 | None:intergenic | 40.0% | |
| GCTTCCTATAAAACCAGTGA+AGG | - | chr3_2:72131586-72131605 | Msa0422700:intron | 40.0% | |
| !!! | GGAACCTTCACTGGTTTTAT+AGG | + | chr3_2:72131593-72131612 | None:intergenic | 40.0% |
| ! | TGAATTTTCCGGCAGAAGAA+TGG | + | chr3_2:72131614-72131633 | None:intergenic | 40.0% |
| AAAAAGAAAACCCCAGCTGA+GGG | + | chr3_2:72131675-72131694 | None:intergenic | 40.0% | |
| ! | CTGCCACATGCTTTTGTAAT+TGG | - | chr3_2:72132042-72132061 | Msa0422700:CDS | 40.0% |
| ! | GCCACATGCTTTTGTAATTG+GGG | - | chr3_2:72132044-72132063 | Msa0422700:CDS | 40.0% |
| ! | TCCCCAATTACAAAAGCATG+TGG | + | chr3_2:72132048-72132067 | None:intergenic | 40.0% |
| ! | GCAAGCTTTTCTTGCATATG+TGG | - | chr3_2:72132163-72132182 | Msa0422700:intron | 40.0% |
| GTTCCTTTGTGGTTACTTCA+AGG | - | chr3_2:72132218-72132237 | Msa0422700:intron | 40.0% | |
| AGTTCCTTTGCACATGGTTA+TGG | - | chr3_2:72132344-72132363 | Msa0422700:CDS | 40.0% | |
| CAAACCATAACCATGTGCAA+AGG | + | chr3_2:72132351-72132370 | None:intergenic | 40.0% | |
| GAATTATATCGTTTGGCGTG+TGG | + | chr3_2:72132457-72132476 | None:intergenic | 40.0% | |
| ! | GTTTGAAGCATTATCGGGTT+TGG | - | chr3_2:72132514-72132533 | Msa0422700:intron | 40.0% |
| !! | AGTTTTATGAGCATACAGCC+AGG | - | chr3_2:72132667-72132686 | Msa0422700:intron | 40.0% |
| ! | GTTTTATGAGCATACAGCCA+GGG | - | chr3_2:72132668-72132687 | Msa0422700:intron | 40.0% |
| CATTTATTTCGGAACTTCCC+TGG | + | chr3_2:72132688-72132707 | None:intergenic | 40.0% | |
| CAGGGAAGTTCCGAAATAAA+TGG | - | chr3_2:72132686-72132705 | Msa0422700:intron | 40.0% | |
| GGGAAGTTCCGAAATAAATG+GGG | - | chr3_2:72132688-72132707 | Msa0422700:intron | 40.0% | |
| GTAACGGTCCCCATTTATTT+CGG | + | chr3_2:72132699-72132718 | None:intergenic | 40.0% | |
| ATTATCAGACCTGCGAGTAA+CGG | + | chr3_2:72132715-72132734 | None:intergenic | 40.0% | |
| ! | TCACTGGGTTTTCTACCATT+AGG | + | chr3_2:72132846-72132865 | None:intergenic | 40.0% |
| CTTAAGATACACACCTCACT+AGG | + | chr3_2:72133496-72133515 | None:intergenic | 40.0% | |
| CTGACCTTCATTGTTTACAG+AGG | - | chr3_2:72133565-72133584 | Msa0422700:CDS | 40.0% | |
| CATTTCATAGCCAACAGTGA+AGG | + | chr3_2:72133646-72133665 | None:intergenic | 40.0% | |
| TATTGATGCAGCCGTGAAAA+AGG | - | chr3_2:72133674-72133693 | Msa0422700:intron | 40.0% | |
| ACTCATCCCATTCATTAGCT+CGG | + | chr3_2:72133824-72133843 | None:intergenic | 40.0% | |
| ! | TGAGATTTTACCCTTCTAGG+TGG | - | chr3_2:72134032-72134051 | Msa0422700:five_prime_UTR | 40.0% |
| ATTTCTGCATCCTGACATTG+TGG | - | chr3_2:72134066-72134085 | Msa0422700:five_prime_UTR | 40.0% | |
| ! | ACCTTTGTCATTTCAAGTGC+AGG | - | chr3_2:72134215-72134234 | Msa0422700:intron | 40.0% |
| ACCTGCACTTGAAATGACAA+AGG | + | chr3_2:72134219-72134238 | None:intergenic | 40.0% | |
| CAAGTGCAGGTACTTAAAAC+TGG | - | chr3_2:72134228-72134247 | Msa0422700:intron | 40.0% | |
| !! | CCTTTATTGGGTTCTAAACC+AGG | + | chr3_2:72134283-72134302 | None:intergenic | 40.0% |
| ! | CCTGGTTTAGAACCCAATAA+AGG | - | chr3_2:72134280-72134299 | Msa0422700:intron | 40.0% |
| AACCCAATAAAGGGTTGACA+TGG | - | chr3_2:72134290-72134309 | Msa0422700:intron | 40.0% | |
| TGCCATGTCAACCCTTTATT+GGG | + | chr3_2:72134295-72134314 | None:intergenic | 40.0% | |
| TTGCCATGTCAACCCTTTAT+TGG | + | chr3_2:72134296-72134315 | None:intergenic | 40.0% | |
| GAACCACAAGAAACTGCTAT+GGG | + | chr3_2:72134371-72134390 | None:intergenic | 40.0% | |
| TGAACCACAAGAAACTGCTA+TGG | + | chr3_2:72134372-72134391 | None:intergenic | 40.0% | |
| ! | GATTTTTGTTAGAGTGACGG+AGG | - | chr3_2:72134437-72134456 | Msa0422700:intron | 40.0% |
| TCTTGTATTGTCTGGTCTAC+CGG | - | chr3_2:72134534-72134553 | Msa0422700:intron | 40.0% | |
| ATGCACAATTAGATACAGCC+CGG | + | chr3_2:72134556-72134575 | None:intergenic | 40.0% | |
| ATTCTCTGTCACATGAATGC+AGG | - | chr3_2:72134574-72134593 | Msa0422700:intron | 40.0% | |
| TTGTGTCTGGCATATGATTC+AGG | - | chr3_2:72134641-72134660 | Msa0422700:intron | 40.0% | |
| !! | GGCATATGATTCAGGTTGAA+TGG | - | chr3_2:72134649-72134668 | Msa0422700:intron | 40.0% |
| TGCAGTTAGAAGATGTGTTG+AGG | - | chr3_2:72134801-72134820 | Msa0422700:intron | 40.0% | |
| CAGGCTATATCAGGAAAAAG+TGG | + | chr3_2:72134966-72134985 | None:intergenic | 40.0% | |
| !!! | TGGTTTTTAGGTGGGTTTGG+AGG | + | chr3_2:72131478-72131497 | None:intergenic | 45.0% |
| ! | GTTGTGAGTTTGGAACAAGG+AGG | + | chr3_2:72131530-72131549 | None:intergenic | 45.0% |
| CAGAAGAATGGAACCTTCAC+TGG | + | chr3_2:72131602-72131621 | None:intergenic | 45.0% | |
| TGAAGGTTCCATTCTTCTGC+CGG | - | chr3_2:72131603-72131622 | Msa0422700:intron | 45.0% | |
| ACGTGGAAGAAGGTGAAGAA+CGG | + | chr3_2:72131641-72131660 | None:intergenic | 45.0% | |
| AAAAGAAAACCCCAGCTGAG+GGG | + | chr3_2:72131674-72131693 | None:intergenic | 45.0% | |
| GAAAAAGAAAACCCCAGCTG+AGG | + | chr3_2:72131676-72131695 | None:intergenic | 45.0% | |
| ! | GCAGCTTGCACTTTTAGCAT+TGG | + | chr3_2:72133040-72133059 | None:intergenic | 45.0% |
| TTGCAGTTCAATCTCCCATC+TGG | - | chr3_2:72133068-72133087 | Msa0422700:intron | 45.0% | |
| TGGGTTCCATCAAATCCAAG+AGG | - | chr3_2:72133400-72133419 | Msa0422700:intron | 45.0% | |
| TCTGCTCCTCTTGGATTTGA+TGG | + | chr3_2:72133409-72133428 | None:intergenic | 45.0% | |
| GGTAAACTTTCTGCTCCTCT+TGG | + | chr3_2:72133418-72133437 | None:intergenic | 45.0% | |
| ! | GTGAAGGTCACAAGGTACTT+TGG | + | chr3_2:72133630-72133649 | None:intergenic | 45.0% |
| TACCTTGTGACCTTCACTGT+TGG | - | chr3_2:72133633-72133652 | Msa0422700:intron | 45.0% | |
| ATGATGGCCGAGCTAATGAA+TGG | - | chr3_2:72133814-72133833 | Msa0422700:intron | 45.0% | |
| TGATGGCCGAGCTAATGAAT+GGG | - | chr3_2:72133815-72133834 | Msa0422700:intron | 45.0% | |
| GTGCTCGCAAACAGACTAAA+TGG | - | chr3_2:72133874-72133893 | Msa0422700:intron | 45.0% | |
| GCTTAGCATACCACCTAGAA+GGG | + | chr3_2:72134045-72134064 | None:intergenic | 45.0% | |
| !! | TCATATGGTGCCACAATGTC+AGG | + | chr3_2:72134079-72134098 | None:intergenic | 45.0% |
| AGTCCCATAGCAGTTTCTTG+TGG | - | chr3_2:72134365-72134384 | Msa0422700:intron | 45.0% | |
| CTTGTATTGTCTGGTCTACC+GGG | - | chr3_2:72134535-72134554 | Msa0422700:intron | 45.0% | |
| CTTGGCATTGCAGAATGACT+TGG | - | chr3_2:72134756-72134775 | Msa0422700:intron | 45.0% | |
| !! | TTGCAGAATGACTTGGTCCA+TGG | - | chr3_2:72134763-72134782 | Msa0422700:intron | 45.0% |
| !! | AGAATGACTTGGTCCATGGA+TGG | - | chr3_2:72134767-72134786 | Msa0422700:intron | 45.0% |
| !! | GAATGACTTGGTCCATGGAT+GGG | - | chr3_2:72134768-72134787 | Msa0422700:intron | 45.0% |
| !! | AATGACTTGGTCCATGGATG+GGG | - | chr3_2:72134769-72134788 | Msa0422700:intron | 45.0% |
| CAAAATCAAGTCCCCATCCA+TGG | + | chr3_2:72134783-72134802 | None:intergenic | 45.0% | |
| TCTCATGTGCAGGCTATATC+AGG | + | chr3_2:72134975-72134994 | None:intergenic | 45.0% | |
| TAGCCTGCACATGAGAAGAT+TGG | - | chr3_2:72134979-72134998 | Msa0422700:five_prime_UTR | 45.0% | |
| ACTCCAATCTTCTCATGTGC+AGG | + | chr3_2:72134985-72135004 | None:intergenic | 45.0% | |
| TTGGAGTTGTCGATGCTCAA+TGG | - | chr3_2:72134998-72135017 | Msa0422700:five_prime_UTR | 45.0% | |
| !! | GCTCAATGGATTGTTCACCA+AGG | - | chr3_2:72135012-72135031 | Msa0422700:five_prime_UTR | 45.0% |
| TGTTCCCACACTAGGAAATC+AGG | - | chr3_2:72135035-72135054 | Msa0422700:five_prime_UTR | 45.0% | |
| ! | GAGTTTGGAACAAGGAGGGA+GGG | + | chr3_2:72131525-72131544 | None:intergenic | 50.0% |
| ! | TGAGTTTGGAACAAGGAGGG+AGG | + | chr3_2:72131526-72131545 | None:intergenic | 50.0% |
| TTATAGACCGCGCCTTCTAG+AGG | - | chr3_2:72132255-72132274 | Msa0422700:intron | 50.0% | |
| !! | AAAGTGAGAGCGCCTCTAGA+AGG | + | chr3_2:72132270-72132289 | None:intergenic | 50.0% |
| ! | CACAAAGGTACGCCGTAAAG+AGG | + | chr3_2:72132978-72132997 | None:intergenic | 50.0% |
| GGAGCAGAAAGTTTACCTCC+CGG | - | chr3_2:72133421-72133440 | Msa0422700:intron | 50.0% | |
| GACTCAGCTTCAACAATGCC+GGG | + | chr3_2:72133442-72133461 | None:intergenic | 50.0% | |
| CGACTCAGCTTCAACAATGC+CGG | + | chr3_2:72133443-72133462 | None:intergenic | 50.0% | |
| CGGCATTGTTGAAGCTGAGT+CGG | - | chr3_2:72133441-72133460 | Msa0422700:intron | 50.0% | |
| ATTGTGGGGCAAACCTAGTG+AGG | - | chr3_2:72133480-72133499 | Msa0422700:CDS | 50.0% | |
| AGCCAACAGTGAAGGTCACA+AGG | + | chr3_2:72133638-72133657 | None:intergenic | 50.0% | |
| CGCTTAGCATACCACCTAGA+AGG | + | chr3_2:72134046-72134065 | None:intergenic | 50.0% | |
| AACCAGGCTGTGAAATCTCC+AGG | + | chr3_2:72134267-72134286 | None:intergenic | 50.0% | |
| ! | TAGAGTGACGGAGGAGAAAC+CGG | - | chr3_2:72134446-72134465 | Msa0422700:intron | 50.0% |
| ACAAGGAGGTAAATGGGGGT+CGG | + | chr3_2:72134481-72134500 | None:intergenic | 50.0% | |
| CTGCACAAGGAGGTAAATGG+GGG | + | chr3_2:72134485-72134504 | None:intergenic | 50.0% | |
| GCTGCACAAGGAGGTAAATG+GGG | + | chr3_2:72134486-72134505 | None:intergenic | 50.0% | |
| CGCTGCACAAGGAGGTAAAT+GGG | + | chr3_2:72134487-72134506 | None:intergenic | 50.0% | |
| ACGCTGCACAAGGAGGTAAA+TGG | + | chr3_2:72134488-72134507 | None:intergenic | 50.0% | |
| GTTACTTACGCTGCACAAGG+AGG | + | chr3_2:72134495-72134514 | None:intergenic | 50.0% | |
| GCAGTTACTTACGCTGCACA+AGG | + | chr3_2:72134498-72134517 | None:intergenic | 50.0% | |
| TGTGCAGCGTAAGTAACTGC+CGG | - | chr3_2:72134498-72134517 | Msa0422700:intron | 50.0% | |
| CATGCTTCTCGCGAGAATAC+TGG | + | chr3_2:72134618-72134637 | None:intergenic | 50.0% | |
| CAGTATTCTCGCGAGAAGCA+TGG | - | chr3_2:72134616-72134635 | Msa0422700:intron | 50.0% | |
| TTACAGCATGGTCCTAGCAG+CGG | - | chr3_2:72134875-72134894 | Msa0422700:intron | 50.0% | |
| TTCCTAGTGTGGGAACACCT+TGG | + | chr3_2:72135032-72135051 | None:intergenic | 50.0% | |
| TGTCGGAGGAACGTGGAAGA+AGG | + | chr3_2:72131651-72131670 | None:intergenic | 55.0% | |
| AAATGGGGACCGTTACTCGC+AGG | - | chr3_2:72132703-72132722 | Msa0422700:intron | 55.0% | |
| TCGAGGGAAGCAAGCCAGAT+GGG | + | chr3_2:72133085-72133104 | None:intergenic | 55.0% | |
| ATCGAGGGAAGCAAGCCAGA+TGG | + | chr3_2:72133086-72133105 | None:intergenic | 55.0% | |
| GATATACAGGCCGTCGTGCT+TGG | - | chr3_2:72133129-72133148 | Msa0422700:intron | 55.0% | |
| TCAGCTTCAACAATGCCGGG+AGG | + | chr3_2:72133439-72133458 | None:intergenic | 55.0% | |
| ! | ACTGGTGAAGAAGCATGGCC+TGG | - | chr3_2:72134246-72134265 | Msa0422700:intron | 55.0% |
| ! | AGAGTGACGGAGGAGAAACC+GGG | - | chr3_2:72134447-72134466 | Msa0422700:intron | 55.0% |
| ! | GAGAAGCATGGCGTTGTGTC+TGG | - | chr3_2:72134628-72134647 | Msa0422700:intron | 55.0% |
| ! | CACCAAGGTGTTCCCACACT+AGG | - | chr3_2:72135027-72135046 | Msa0422700:five_prime_UTR | 55.0% |
| ! | AAACCCCAGCTGAGGGGTGT+CGG | + | chr3_2:72131668-72131687 | None:intergenic | 60.0% |
| GGCCTGGAGATTTCACAGCC+TGG | - | chr3_2:72134262-72134281 | Msa0422700:intron | 60.0% | |
| TGACGGAGGAGAAACCGGGA+TGG | - | chr3_2:72134451-72134470 | Msa0422700:intron | 60.0% | |
| TGGTCCTAGCAGCGGCTTAC+CGG | - | chr3_2:72134883-72134902 | Msa0422700:intron | 60.0% | |
| TTCTCCGGTAAGCCGCTGCT+AGG | + | chr3_2:72134890-72134909 | None:intergenic | 60.0% | |
| !! | TGAGGGGTGTCGGAGGAACG+TGG | + | chr3_2:72131658-72131677 | None:intergenic | 65.0% |
| TTCCTCCGACACCCCTCAGC+TGG | - | chr3_2:72131660-72131679 | Msa0422700:CDS | 65.0% | |
| TCCTCCGACACCCCTCAGCT+GGG | - | chr3_2:72131661-72131680 | Msa0422700:CDS | 65.0% | |
| !! | GAGAGCGCCTCTAGAAGGCG+CGG | + | chr3_2:72132265-72132284 | None:intergenic | 65.0% |
| TGGGGGTCGGAACACCATCC+CGG | + | chr3_2:72134468-72134487 | None:intergenic | 65.0% | |
| CCTCCGACACCCCTCAGCTG+GGG | - | chr3_2:72131662-72131681 | Msa0422700:CDS | 70.0% | |
| !! | CCCCAGCTGAGGGGTGTCGG+AGG | + | chr3_2:72131665-72131684 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 72131461 | 72135209 | 72131461 | ID=Msa0422700;Name=Msa0422700 |
| chr3_2 | mRNA | 72131461 | 72135209 | 72131461 | ID=Msa0422700-mRNA-1;Parent=Msa0422700;Name=Msa0422700-mRNA-1;_AED=0.32;_eAED=0.32;_QI=418|0.92|0.85|0.92|0.92|0.85|14|0|353 |
| chr3_2 | exon | 72131461 | 72131475 | 72131461 | ID=Msa0422700-mRNA-1:exon:17768;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72131614 | 72131688 | 72131614 | ID=Msa0422700-mRNA-1:exon:17767;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72131848 | 72131901 | 72131848 | ID=Msa0422700-mRNA-1:exon:17766;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72132008 | 72132074 | 72132008 | ID=Msa0422700-mRNA-1:exon:17765;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72132165 | 72132221 | 72132165 | ID=Msa0422700-mRNA-1:exon:17764;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72132320 | 72132433 | 72132320 | ID=Msa0422700-mRNA-1:exon:17763;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72132518 | 72132619 | 72132518 | ID=Msa0422700-mRNA-1:exon:17762;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72132775 | 72132890 | 72132775 | ID=Msa0422700-mRNA-1:exon:17761;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72132975 | 72133058 | 72132975 | ID=Msa0422700-mRNA-1:exon:17760;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72133169 | 72133273 | 72133169 | ID=Msa0422700-mRNA-1:exon:17759;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72133456 | 72133596 | 72133456 | ID=Msa0422700-mRNA-1:exon:17758;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72133717 | 72133828 | 72133717 | ID=Msa0422700-mRNA-1:exon:17757;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72133946 | 72134094 | 72133946 | ID=Msa0422700-mRNA-1:exon:17756;Parent=Msa0422700-mRNA-1 |
| chr3_2 | exon | 72134921 | 72135209 | 72134921 | ID=Msa0422700-mRNA-1:exon:17755;Parent=Msa0422700-mRNA-1 |
| chr3_2 | five_prime_UTR | 72134921 | 72135209 | 72134921 | ID=Msa0422700-mRNA-1:five_prime_utr;Parent=Msa0422700-mRNA-1 |
| chr3_2 | five_prime_UTR | 72133966 | 72134094 | 72133966 | ID=Msa0422700-mRNA-1:five_prime_utr;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72133946 | 72133965 | 72133946 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72133717 | 72133828 | 72133717 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72133456 | 72133596 | 72133456 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72133169 | 72133273 | 72133169 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72132975 | 72133058 | 72132975 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72132775 | 72132890 | 72132775 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72132518 | 72132619 | 72132518 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72132320 | 72132433 | 72132320 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72132165 | 72132221 | 72132165 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72132008 | 72132074 | 72132008 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72131848 | 72131901 | 72131848 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72131614 | 72131688 | 72131614 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| chr3_2 | CDS | 72131461 | 72131475 | 72131461 | ID=Msa0422700-mRNA-1:cds;Parent=Msa0422700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
