Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781390 | sp|Q9FH04|ADHL7_ARATH | 68.380 | 389 | 110 | 3 | 1 | 376 | 1 | 389 | 0.0 | 550 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781390 | G7K2X3 | 94.344 | 389 | 11 | 1 | 1 | 378 | 3 | 391 | 0.0 | 739 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0781390 | 0.857991 | 1.119070e-62 | -8.615850e-47 |
| Msa0035400 | Msa0781390 | 0.800037 | 1.739242e-48 | -8.615850e-47 |
| Msa0044180 | Msa0781390 | 0.839282 | 1.739341e-57 | -8.615850e-47 |
| Msa0064550 | Msa0781390 | 0.851131 | 1.083745e-60 | -8.615850e-47 |
| Msa0090860 | Msa0781390 | 0.817666 | 2.928871e-52 | -8.615850e-47 |
| Msa0108070 | Msa0781390 | 0.829886 | 4.005020e-55 | -8.615850e-47 |
| Msa0109490 | Msa0781390 | 0.828740 | 7.599788e-55 | -8.615850e-47 |
| Msa0604880 | Msa0781390 | 0.847192 | 1.350614e-59 | -8.615850e-47 |
| Msa0605250 | Msa0781390 | 0.840351 | 9.164731e-58 | -8.615850e-47 |
| Msa0622250 | Msa0781390 | 0.830799 | 2.396592e-55 | -8.615850e-47 |
| Msa0627050 | Msa0781390 | 0.831811 | 1.350694e-55 | -8.615850e-47 |
| Msa0644630 | Msa0781390 | 0.817852 | 2.659294e-52 | -8.615850e-47 |
| Msa0646190 | Msa0781390 | 0.848097 | 7.615980e-60 | -8.615850e-47 |
| Msa0659300 | Msa0781390 | -0.833340 | 5.641845e-56 | -8.615850e-47 |
| Msa0685890 | Msa0781390 | 0.810201 | 1.296632e-50 | -8.615850e-47 |
| Msa0693400 | Msa0781390 | 0.801182 | 1.015725e-48 | -8.615850e-47 |
| Msa0709660 | Msa0781390 | 0.833219 | 6.048727e-56 | -8.615850e-47 |
| Msa0740210 | Msa0781390 | 0.969601 | 2.311195e-130 | -8.615850e-47 |
| Msa0748330 | Msa0781390 | 0.825245 | 5.206168e-54 | -8.615850e-47 |
| Msa0781390 | Msa0793100 | 0.803350 | 3.635149e-49 | -8.615850e-47 |
| Msa0781390 | Msa0820520 | 0.908750 | 1.214581e-81 | -8.615850e-47 |
| Msa0781390 | Msa0860920 | 0.976680 | 2.720945e-142 | -8.615850e-47 |
| Msa0781390 | Msa0968780 | 0.833460 | 5.265861e-56 | -8.615850e-47 |
| Msa0781390 | Msa0984000 | 0.847539 | 1.084944e-59 | -8.615850e-47 |
| Msa0781390 | Msa1079480 | 0.812869 | 3.412120e-51 | -8.615850e-47 |
| Msa0781390 | Msa1082150 | 0.819547 | 1.096882e-52 | -8.615850e-47 |
| Msa0781390 | Msa1137940 | 0.853077 | 3.032149e-61 | -8.615850e-47 |
| Msa0781390 | Msa1144700 | 0.837574 | 4.795956e-57 | -8.615850e-47 |
| Msa0781390 | Msa1144730 | 0.847986 | 8.170634e-60 | -8.615850e-47 |
| Msa0781390 | Msa1158090 | 0.818259 | 2.152388e-52 | -8.615850e-47 |
| Msa0781390 | Msa1177240 | 0.812746 | 3.630939e-51 | -8.615850e-47 |
| Msa0781390 | Msa1180050 | 0.853227 | 2.746880e-61 | -8.615850e-47 |
| Msa0781390 | Msa1232270 | 0.864314 | 1.329639e-64 | -8.615850e-47 |
| Msa0781390 | Msa1252300 | 0.815665 | 8.228262e-52 | -8.615850e-47 |
| Msa0781390 | Msa1270770 | 0.851422 | 8.967253e-61 | -8.615850e-47 |
| Msa0781390 | Msa1281270 | 0.821034 | 5.004626e-53 | -8.615850e-47 |
| Msa0781390 | Msa1292960 | 0.803924 | 2.764179e-49 | -8.615850e-47 |
| Msa0781390 | Msa1313050 | 0.831013 | 2.122614e-55 | -8.615850e-47 |
| Msa0781390 | Msa1317030 | 0.803167 | 3.966041e-49 | -8.615850e-47 |
| Msa0781390 | Msa1320380 | 0.827961 | 1.171703e-54 | -8.615850e-47 |
| Msa0781390 | Msa1349810 | 0.844744 | 6.253489e-59 | -8.615850e-47 |
| Msa0781390 | Msa1354090 | 0.853480 | 2.323787e-61 | -8.615850e-47 |
| Msa0781390 | Msa1358340 | 0.843215 | 1.607194e-58 | -8.615850e-47 |
| Msa0781390 | Msa1359890 | 0.850365 | 1.780560e-60 | -8.615850e-47 |
| Msa0781390 | Msa1394900 | 0.846755 | 1.779456e-59 | -8.615850e-47 |
| Msa0781390 | Msa1406020 | 0.807077 | 6.027690e-50 | -8.615850e-47 |
| Msa0781390 | Msa1434660 | 0.847107 | 1.425847e-59 | -8.615850e-47 |
| Msa0781390 | Msa1459540 | 0.822027 | 2.949785e-53 | -8.615850e-47 |
| Msa0781390 | Msa1466350 | 0.817046 | 4.040475e-52 | -8.615850e-47 |
| Msa0154200 | Msa0781390 | 0.807055 | 6.092804e-50 | -8.615850e-47 |
| Msa0154220 | Msa0781390 | 0.859839 | 3.133033e-63 | -8.615850e-47 |
| Msa0154240 | Msa0781390 | 0.815348 | 9.682603e-52 | -8.615850e-47 |
| Msa0154270 | Msa0781390 | 0.896151 | 4.857422e-76 | -8.615850e-47 |
| Msa0155610 | Msa0781390 | 0.817908 | 2.583008e-52 | -8.615850e-47 |
| Msa0183560 | Msa0781390 | 0.823197 | 1.576678e-53 | -8.615850e-47 |
| Msa0197030 | Msa0781390 | 0.860250 | 2.354180e-63 | -8.615850e-47 |
| Msa0225880 | Msa0781390 | 0.803734 | 3.025715e-49 | -8.615850e-47 |
| Msa0380650 | Msa0781390 | 0.804451 | 2.146973e-49 | -8.615850e-47 |
| Msa0382590 | Msa0781390 | 0.803245 | 3.821944e-49 | -8.615850e-47 |
| Msa0387970 | Msa0781390 | 0.814415 | 1.558798e-51 | -8.615850e-47 |
| Msa0392050 | Msa0781390 | 0.847550 | 1.077465e-59 | -8.615850e-47 |
| Msa0392540 | Msa0781390 | 0.839869 | 1.223905e-57 | -8.615850e-47 |
| Msa0401340 | Msa0781390 | 0.826025 | 3.400960e-54 | -8.615850e-47 |
| Msa0412190 | Msa0781390 | 0.848351 | 6.479771e-60 | -8.615850e-47 |
| Msa0428730 | Msa0781390 | 0.807029 | 6.170428e-50 | -8.615850e-47 |
| Msa0430290 | Msa0781390 | 0.806612 | 7.558279e-50 | -8.615850e-47 |
| Msa0432720 | Msa0781390 | 0.820529 | 6.537140e-53 | -8.615850e-47 |
| Msa0435010 | Msa0781390 | 0.844158 | 8.989858e-59 | -8.615850e-47 |
| Msa0437550 | Msa0781390 | 0.811925 | 5.486022e-51 | -8.615850e-47 |
| Msa0440310 | Msa0781390 | 0.834595 | 2.736328e-56 | -8.615850e-47 |
| Msa0448120 | Msa0781390 | 0.825168 | 5.429512e-54 | -8.615850e-47 |
| Msa0456760 | Msa0781390 | 0.811313 | 7.451681e-51 | -8.615850e-47 |
| Msa0469950 | Msa0781390 | 0.846660 | 1.889086e-59 | -8.615850e-47 |
| Msa0479030 | Msa0781390 | 0.817375 | 3.406638e-52 | -8.615850e-47 |
| Msa0479100 | Msa0781390 | 0.843381 | 1.451153e-58 | -8.615850e-47 |
| Msa0481490 | Msa0781390 | 0.820963 | 5.194223e-53 | -8.615850e-47 |
| Msa0238860 | Msa0781390 | 0.824461 | 7.970940e-54 | -8.615850e-47 |
| Msa0253160 | Msa0781390 | 0.816221 | 6.184362e-52 | -8.615850e-47 |
| Msa0265580 | Msa0781390 | 0.808757 | 2.647122e-50 | -8.615850e-47 |
| Msa0276590 | Msa0781390 | 0.831036 | 2.095321e-55 | -8.615850e-47 |
| Msa0291940 | Msa0781390 | 0.801543 | 8.569958e-49 | -8.615850e-47 |
| Msa0303440 | Msa0781390 | 0.808681 | 2.747812e-50 | -8.615850e-47 |
| Msa0304110 | Msa0781390 | 0.804415 | 2.184426e-49 | -8.615850e-47 |
| Msa0316610 | Msa0781390 | 0.802859 | 4.592823e-49 | -8.615850e-47 |
| Msa0344680 | Msa0781390 | 0.847394 | 1.189263e-59 | -8.615850e-47 |
| Msa0344710 | Msa0781390 | 0.816516 | 5.311746e-52 | -8.615850e-47 |
| Msa0346790 | Msa0781390 | 0.815854 | 7.466676e-52 | -8.615850e-47 |
| Msa0354390 | Msa0781390 | 0.808282 | 3.343515e-50 | -8.615850e-47 |
| Msa0358290 | Msa0781390 | 0.821961 | 3.056529e-53 | -8.615850e-47 |
| Msa0487490 | Msa0781390 | 0.829177 | 5.954583e-55 | -8.615850e-47 |
| Msa0525270 | Msa0781390 | 0.843645 | 1.233593e-58 | -8.615850e-47 |
| Msa0525280 | Msa0781390 | 0.838064 | 3.589491e-57 | -8.615850e-47 |
| Msa0548210 | Msa0781390 | 0.819646 | 1.040994e-52 | -8.615850e-47 |
| Msa0549540 | Msa0781390 | 0.860111 | 2.593915e-63 | -8.615850e-47 |
| Msa0549760 | Msa0781390 | 0.813801 | 2.129075e-51 | -8.615850e-47 |
| Msa0556070 | Msa0781390 | 0.801828 | 7.490909e-49 | -8.615850e-47 |
| Msa0583740 | Msa0781390 | 0.816550 | 5.220058e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781390 | MtrunA17_Chr5g0440521 | 94.344 | 389 | 11 | 1 | 1 | 378 | 3 | 391 | 0.0 | 739 |
| Msa0781390 | MtrunA17_Chr3g0118441 | 74.026 | 385 | 88 | 2 | 6 | 378 | 2 | 386 | 0.0 | 595 |
| Msa0781390 | MtrunA17_Chr3g0132351 | 60.317 | 378 | 135 | 4 | 14 | 377 | 14 | 390 | 1.03e-155 | 443 |
| Msa0781390 | MtrunA17_Chr3g0118431 | 76.384 | 271 | 53 | 1 | 109 | 368 | 20 | 290 | 5.53e-152 | 430 |
| Msa0781390 | MtrunA17_Chr1g0183131 | 50.000 | 374 | 174 | 3 | 14 | 376 | 6 | 377 | 2.20e-126 | 369 |
| Msa0781390 | MtrunA17_Chr6g0478081 | 48.953 | 382 | 178 | 5 | 8 | 378 | 2 | 377 | 5.64e-122 | 357 |
| Msa0781390 | MtrunA17_Chr7g0262421 | 48.285 | 379 | 182 | 4 | 7 | 374 | 2 | 377 | 1.50e-120 | 353 |
| Msa0781390 | MtrunA17_Chr3g0125911 | 44.764 | 382 | 196 | 5 | 9 | 378 | 2 | 380 | 9.57e-116 | 341 |
| Msa0781390 | MtrunA17_Chr3g0125961 | 45.067 | 375 | 191 | 5 | 14 | 376 | 7 | 378 | 1.07e-114 | 338 |
| Msa0781390 | MtrunA17_Chr3g0125941 | 44.828 | 377 | 193 | 5 | 14 | 378 | 8 | 381 | 1.26e-113 | 336 |
| Msa0781390 | MtrunA17_Chr7g0242291 | 46.825 | 378 | 184 | 6 | 14 | 376 | 18 | 393 | 8.54e-112 | 332 |
| Msa0781390 | MtrunA17_Chr4g0021211 | 44.327 | 379 | 192 | 6 | 10 | 376 | 27 | 398 | 1.66e-102 | 308 |
| Msa0781390 | MtrunA17_Chr5g0419681 | 43.684 | 380 | 194 | 8 | 10 | 376 | 2 | 374 | 1.57e-99 | 300 |
| Msa0781390 | MtrunA17_Chr7g0242301 | 42.897 | 359 | 157 | 5 | 32 | 376 | 1 | 325 | 1.44e-89 | 273 |
| Msa0781390 | MtrunA17_Chr8g0385221 | 30.871 | 379 | 236 | 12 | 15 | 374 | 51 | 422 | 6.33e-35 | 133 |
| Msa0781390 | MtrunA17_Chr6g0474141 | 25.220 | 341 | 213 | 11 | 42 | 367 | 39 | 352 | 5.73e-19 | 87.4 |
| Msa0781390 | MtrunA17_Chr5g0411911 | 25.581 | 344 | 214 | 12 | 43 | 374 | 40 | 353 | 8.55e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0781390 | AT5G42250.1 | 68.380 | 389 | 110 | 3 | 1 | 376 | 1 | 389 | 0.0 | 550 |
| Msa0781390 | AT1G22430.2 | 58.355 | 389 | 147 | 5 | 3 | 378 | 2 | 388 | 6.42e-162 | 459 |
| Msa0781390 | AT1G22430.1 | 58.355 | 389 | 147 | 5 | 3 | 378 | 2 | 388 | 6.42e-162 | 459 |
| Msa0781390 | AT4G22110.2 | 59.335 | 391 | 144 | 5 | 1 | 378 | 1 | 389 | 4.65e-161 | 457 |
| Msa0781390 | AT4G22110.1 | 59.335 | 391 | 144 | 5 | 1 | 378 | 1 | 389 | 4.65e-161 | 457 |
| Msa0781390 | AT1G22440.1 | 58.961 | 385 | 143 | 5 | 7 | 378 | 4 | 386 | 1.35e-158 | 451 |
| Msa0781390 | AT1G22430.3 | 61.017 | 295 | 112 | 3 | 3 | 295 | 2 | 295 | 2.14e-127 | 369 |
| Msa0781390 | AT5G43940.1 | 49.462 | 372 | 175 | 3 | 14 | 374 | 6 | 375 | 3.84e-127 | 370 |
| Msa0781390 | AT5G43940.2 | 48.907 | 366 | 174 | 3 | 20 | 374 | 24 | 387 | 1.97e-123 | 362 |
| Msa0781390 | AT5G24760.1 | 48.446 | 386 | 180 | 6 | 6 | 378 | 2 | 381 | 5.90e-123 | 360 |
| Msa0781390 | AT1G64710.1 | 48.267 | 375 | 178 | 6 | 16 | 376 | 8 | 380 | 1.18e-119 | 352 |
| Msa0781390 | AT1G77120.1 | 45.989 | 374 | 189 | 3 | 14 | 376 | 6 | 377 | 3.19e-115 | 340 |
| Msa0781390 | AT5G24760.2 | 48.603 | 358 | 167 | 5 | 32 | 378 | 1 | 352 | 1.23e-114 | 338 |
| Msa0781390 | AT5G24760.3 | 48.603 | 358 | 167 | 5 | 32 | 378 | 1 | 352 | 1.23e-114 | 338 |
| Msa0781390 | AT1G32780.1 | 47.917 | 384 | 177 | 7 | 16 | 378 | 9 | 390 | 2.11e-113 | 336 |
| Msa0781390 | AT1G64710.2 | 47.632 | 359 | 172 | 6 | 32 | 376 | 1 | 357 | 5.22e-113 | 334 |
| Msa0781390 | AT1G22430.4 | 59.259 | 270 | 107 | 3 | 3 | 270 | 2 | 270 | 7.21e-112 | 328 |
| Msa0781390 | AT1G22430.5 | 59.259 | 270 | 107 | 3 | 3 | 270 | 2 | 270 | 7.21e-112 | 328 |
| Msa0781390 | AT4G22110.3 | 62.172 | 267 | 98 | 3 | 1 | 265 | 1 | 266 | 1.12e-111 | 327 |
| Msa0781390 | AT1G64710.3 | 47.078 | 308 | 148 | 5 | 82 | 376 | 6 | 311 | 1.14e-93 | 283 |
| Msa0781390 | AT5G24760.4 | 47.407 | 270 | 128 | 4 | 120 | 378 | 1 | 267 | 1.69e-78 | 243 |
| Msa0781390 | AT5G63620.1 | 28.142 | 366 | 242 | 8 | 19 | 368 | 57 | 417 | 1.30e-34 | 132 |
| Msa0781390 | AT5G63620.2 | 28.142 | 366 | 242 | 8 | 19 | 368 | 57 | 417 | 1.79e-34 | 132 |
| Msa0781390 | AT5G63620.3 | 29.461 | 241 | 163 | 3 | 19 | 253 | 57 | 296 | 1.38e-26 | 108 |
| Msa0781390 | AT5G51970.1 | 25.287 | 348 | 217 | 13 | 36 | 367 | 34 | 354 | 4.74e-17 | 82.0 |
| Msa0781390 | AT5G51970.2 | 25.287 | 348 | 217 | 13 | 36 | 367 | 34 | 354 | 4.74e-17 | 82.0 |
| Msa0781390 | AT4G37990.1 | 24.096 | 332 | 221 | 12 | 43 | 368 | 34 | 340 | 6.47e-12 | 66.6 |
| Msa0781390 | AT4G37980.1 | 24.405 | 336 | 215 | 12 | 43 | 368 | 34 | 340 | 9.14e-12 | 66.2 |
Find 87 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATACCTTCTAAATAAAT+AGG | 0.158294 | 5_2:+63885902 | None:intergenic |
| ACACACACCTTTACATCTTA+TGG | 0.160696 | 5_2:+63885665 | None:intergenic |
| ACTCTTATGGGGTCTATATT+TGG | 0.200744 | 5_2:-63882898 | Msa0781390:CDS |
| GTCACAGTGATATCATATTT+TGG | 0.203880 | 5_2:-63885311 | Msa0781390:CDS |
| TTATTATCAGGAACTCAATT+TGG | 0.208168 | 5_2:-63882568 | Msa0781390:intron |
| TGTGGAGCAACTAGGATTAT+AGG | 0.276027 | 5_2:-63883705 | Msa0781390:CDS |
| CTTTATTCAGCGAAGAAGTT+TGG | 0.295764 | 5_2:-63883531 | Msa0781390:intron |
| CACACACCTTTACATCTTAT+GGG | 0.302890 | 5_2:+63885666 | None:intergenic |
| ACTAGATTCACTGATCTAAA+TGG | 0.304247 | 5_2:-63884413 | Msa0781390:CDS |
| CTTTGTAAATCCTGGAGAAT+TGG | 0.307283 | 5_2:-63883499 | Msa0781390:CDS |
| AGTATCCCTATTTATTTAGA+AGG | 0.308290 | 5_2:-63885908 | Msa0781390:intron |
| CCTTCACTTGTTGCTGCAGC+AGG | 0.313951 | 5_2:+63885696 | None:intergenic |
| TAAGAGTCTTCCCTTGAAAA+AGG | 0.321797 | 5_2:+63882914 | None:intergenic |
| GCCCTGTTGGGAGGAATTGC+TGG | 0.324195 | 5_2:+63884308 | None:intergenic |
| CATTGTTATCCCAATCTTCA+TGG | 0.329697 | 5_2:-63884534 | Msa0781390:CDS |
| CTTTACATCTTATGGGTTGT+TGG | 0.330117 | 5_2:+63885673 | None:intergenic |
| TTTCAAGGGAAGACTCTTAT+GGG | 0.369580 | 5_2:-63882910 | Msa0781390:CDS |
| AATGTCTTCGGTGTGTGATT+TGG | 0.385429 | 5_2:-63882476 | Msa0781390:CDS |
| ATCCAGCAATTCCTCCCAAC+AGG | 0.388742 | 5_2:-63884310 | Msa0781390:CDS |
| CTCAGTTGTGGTGTATCAAC+AGG | 0.395594 | 5_2:-63884278 | Msa0781390:intron |
| TCACAATCAGCCATGAAGAT+TGG | 0.401526 | 5_2:+63884524 | None:intergenic |
| TAATACCTTCTAAATAAATA+GGG | 0.402544 | 5_2:+63885903 | None:intergenic |
| GAAAACAGCAAATGTTGAAC+CGG | 0.406203 | 5_2:-63884150 | Msa0781390:CDS |
| TTACATATTGACATAATTCA+AGG | 0.418523 | 5_2:+63882412 | None:intergenic |
| CACAATCAGCCATGAAGATT+GGG | 0.418681 | 5_2:+63884525 | None:intergenic |
| GCTGAAGGAGCTAGACTTTG+TGG | 0.441563 | 5_2:-63883723 | Msa0781390:CDS |
| TGGATCAATCTTGAGTAGAT+TGG | 0.449026 | 5_2:+63884328 | None:intergenic |
| GTCACAGACTTTGTAAATCC+TGG | 0.452717 | 5_2:-63883507 | Msa0781390:CDS |
| GGAAAACAAATCTGTGAGTC+AGG | 0.454117 | 5_2:-63883478 | Msa0781390:CDS |
| ATCCAAGGTTTAATATCAAA+AGG | 0.456805 | 5_2:+63884452 | None:intergenic |
| AACTAGAGACAAATATGAAA+TGG | 0.460302 | 5_2:+63884378 | None:intergenic |
| CTGAGGAGGCATGCCCTGTT+GGG | 0.462513 | 5_2:+63884296 | None:intergenic |
| CTAGCTTCACGTGGCATTGG+TGG | 0.466521 | 5_2:+63885360 | None:intergenic |
| TGACTAAAGGAGAATGTCTT+CGG | 0.469794 | 5_2:-63882488 | Msa0781390:CDS |
| TGCAGCAGGTTTATCTTCCA+TGG | 0.473298 | 5_2:+63885710 | None:intergenic |
| TATTGGGTCATGAGGCAATT+GGG | 0.475842 | 5_2:-63885117 | Msa0781390:intron |
| TCAATTATCAGTGGTTCACC+TGG | 0.479329 | 5_2:+63885399 | None:intergenic |
| ATGTGTTGGTATGGCATCAT+TGG | 0.482347 | 5_2:-63883412 | Msa0781390:CDS |
| GCCTCATGACCCAATATCCT+TGG | 0.489367 | 5_2:+63885124 | None:intergenic |
| CTAGACTTTGTGGAGCAACT+AGG | 0.495288 | 5_2:-63883713 | Msa0781390:CDS |
| GATAATTGAGGAGATCTTTG+TGG | 0.495474 | 5_2:-63885385 | Msa0781390:CDS |
| TTGATACTCAACTTAGATCC+TGG | 0.495669 | 5_2:+63882949 | None:intergenic |
| GAAGTAACAGAAGTTACAAA+AGG | 0.497121 | 5_2:-63884560 | Msa0781390:CDS |
| ATCCTAGCTTCACGTGGCAT+TGG | 0.500201 | 5_2:+63885357 | None:intergenic |
| TTGCTTTGAATGTGTTGGTA+TGG | 0.503086 | 5_2:-63883421 | Msa0781390:CDS |
| ACTGAGGAGGCATGCCCTGT+TGG | 0.511132 | 5_2:+63884295 | None:intergenic |
| CTTATGGGGTCTATATTTGG+AGG | 0.514741 | 5_2:-63882895 | Msa0781390:CDS |
| CAACAACCCATAAGATGTAA+AGG | 0.518832 | 5_2:-63885672 | Msa0781390:intron |
| AGCATATGCTTCATGTAGAA+AGG | 0.522535 | 5_2:-63883382 | Msa0781390:intron |
| ATATTGGGTCATGAGGCAAT+TGG | 0.527994 | 5_2:-63885118 | Msa0781390:CDS |
| TCTTCCATGGCGATGAGTCA+AGG | 0.534652 | 5_2:+63885723 | None:intergenic |
| GATTATTGCTTTGAATGTGT+TGG | 0.539967 | 5_2:-63883426 | Msa0781390:CDS |
| TCCAAGGATATTGGGTCATG+AGG | 0.547263 | 5_2:-63885125 | Msa0781390:CDS |
| AGGGCATGCCTCCTCAGTTG+TGG | 0.551435 | 5_2:-63884290 | Msa0781390:CDS |
| ATGTTAGGAGTGGACAAGCC+AGG | 0.552820 | 5_2:-63882967 | Msa0781390:CDS |
| ATTGTTTCCTAGGTGGCTGA+AGG | 0.554628 | 5_2:-63883738 | Msa0781390:intron |
| CACCAATGCCACGTGAAGCT+AGG | 0.554714 | 5_2:-63885359 | Msa0781390:CDS |
| ACTCGGATGTATTGGATTAG+CGG | 0.554730 | 5_2:-63884105 | Msa0781390:intron |
| TACATATTGACATAATTCAA+GGG | 0.556010 | 5_2:+63882413 | None:intergenic |
| GCTGCGGTGTGTCGCAAACC+AGG | 0.561296 | 5_2:-63885417 | Msa0781390:CDS |
| GTTATCATAGAGATGACTGA+TGG | 0.568363 | 5_2:-63883456 | Msa0781390:CDS |
| TTTAGTGTGGTGGAAAGTGT+TGG | 0.568604 | 5_2:-63884587 | Msa0781390:intron |
| CTTCCATGGCGATGAGTCAA+GGG | 0.578363 | 5_2:+63885724 | None:intergenic |
| AAAACAGCAAATGTTGAACC+GGG | 0.583487 | 5_2:-63884149 | Msa0781390:CDS |
| AGGAGGCATGCCCTGTTGGG+AGG | 0.588882 | 5_2:+63884299 | None:intergenic |
| CAAAAGGAAACTTTGAACAA+AGG | 0.590036 | 5_2:+63884468 | None:intergenic |
| CCTGCTGCAGCAACAAGTGA+AGG | 0.594994 | 5_2:-63885696 | Msa0781390:CDS |
| TCTTCGGTGTGTGATTTGGA+TGG | 0.597231 | 5_2:-63882472 | Msa0781390:CDS |
| AGCAACTAGGATTATAGGTG+TGG | 0.598387 | 5_2:-63883700 | Msa0781390:CDS |
| TTCAAGGGAAGACTCTTATG+GGG | 0.612341 | 5_2:-63882909 | Msa0781390:CDS |
| AGGTGAACCACTGATAATTG+AGG | 0.618418 | 5_2:-63885397 | Msa0781390:CDS |
| TGTGGTGGAAAGTGTTGGAG+AGG | 0.623425 | 5_2:-63884582 | Msa0781390:CDS |
| GATATCACTGTGACAAAGAG+AGG | 0.624489 | 5_2:+63885320 | None:intergenic |
| TCCAGCAATTCCTCCCAACA+GGG | 0.631418 | 5_2:-63884309 | Msa0781390:CDS |
| CCTCCCTTGACTCATCGCCA+TGG | 0.635431 | 5_2:-63885727 | Msa0781390:exon |
| AAAATAGCTACTGTCGACCC+CGG | 0.636859 | 5_2:+63884131 | None:intergenic |
| ATCATAGAGATGACTGATGG+AGG | 0.637658 | 5_2:-63883453 | Msa0781390:CDS |
| TTGATACACCACAACTGAGG+AGG | 0.646650 | 5_2:+63884282 | None:intergenic |
| ATTTAGATCAGTGAATCTAG+TGG | 0.650022 | 5_2:+63884415 | None:intergenic |
| CCATGGCGATGAGTCAAGGG+AGG | 0.650108 | 5_2:+63885727 | None:intergenic |
| GTATCATATCTAAGCATCCA+AGG | 0.653021 | 5_2:+63884437 | None:intergenic |
| AAGATCTCCTCAATTATCAG+TGG | 0.664996 | 5_2:+63885390 | None:intergenic |
| AGATCAAATATAGAAGTCAG+AGG | 0.675333 | 5_2:+63882375 | None:intergenic |
| CATGGCGATGAGTCAAGGGA+GGG | 0.678909 | 5_2:+63885728 | None:intergenic |
| ATACGAATCCTAGCTTCACG+TGG | 0.710856 | 5_2:+63885351 | None:intergenic |
| CTGTTGATACACCACAACTG+AGG | 0.718420 | 5_2:+63884279 | None:intergenic |
| AAACAGCAAATGTTGAACCG+GGG | 0.725303 | 5_2:-63884148 | Msa0781390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTACTTTTGA+AGG | - | chr5_2:63883154-63883173 | Msa0781390:intron | 10.0% |
| !! | AACAAAAGATAAAATATAAT+TGG | + | chr5_2:63884439-63884458 | None:intergenic | 10.0% |
| !!! | AAAAATCAAAGTATCTTTTT+AGG | - | chr5_2:63882358-63882377 | Msa0781390:three_prime_UTR | 15.0% |
| !! | TAATACCTTCTAAATAAATA+GGG | + | chr5_2:63882418-63882437 | None:intergenic | 15.0% |
| !! | ATAATACCTTCTAAATAAAT+AGG | + | chr5_2:63882419-63882438 | None:intergenic | 15.0% |
| !!! | TAATATTTTTGATAGTGAAA+GGG | + | chr5_2:63882487-63882506 | None:intergenic | 15.0% |
| !!! | ATAATATTTTTGATAGTGAA+AGG | + | chr5_2:63882488-63882507 | None:intergenic | 15.0% |
| !! | TATTATCAAATTAAATTGCA+TGG | + | chr5_2:63882750-63882769 | None:intergenic | 15.0% |
| !! | TAAATTAATATCACGTTAAA+TGG | + | chr5_2:63883544-63883563 | None:intergenic | 15.0% |
| !! | ATTTAATGTTTATATGTTCT+TGG | - | chr5_2:63883559-63883578 | Msa0781390:intron | 15.0% |
| !!! | TTTATCAAACATCAATTTTT+AGG | - | chr5_2:63884130-63884149 | Msa0781390:CDS | 15.0% |
| !!! | TTATCAAACATCAATTTTTA+GGG | - | chr5_2:63884131-63884150 | Msa0781390:CDS | 15.0% |
| !! | AATCAAAAAAAGAAATTACA+TGG | + | chr5_2:63885604-63885623 | None:intergenic | 15.0% |
| !!! | AAAAGATATTTTGGAGATTT+TGG | + | chr5_2:63882521-63882540 | None:intergenic | 20.0% |
| !!! | ATGTAACTGAAAAGATATTT+TGG | + | chr5_2:63882530-63882549 | None:intergenic | 20.0% |
| !! | AAAAAACACTATGAATGTAA+TGG | - | chr5_2:63882853-63882872 | Msa0781390:intron | 20.0% |
| !! | ATACAAATTAGTAAAATGCA+TGG | + | chr5_2:63883236-63883255 | None:intergenic | 20.0% |
| !! | ATATTTCTCATTTCCTAATT+AGG | - | chr5_2:63883276-63883295 | Msa0781390:intron | 20.0% |
| !!! | AATTTTTATGTGATTTAGTG+TGG | - | chr5_2:63883718-63883737 | Msa0781390:CDS | 20.0% |
| !!! | TATCAAACATCAATTTTTAG+GGG | - | chr5_2:63884132-63884151 | Msa0781390:CDS | 20.0% |
| !!! | TTACCAATTTCAAATTTTTC+TGG | + | chr5_2:63884652-63884671 | None:intergenic | 20.0% |
| !!! | CTTTATTTTAACCATGTTAT+TGG | - | chr5_2:63885012-63885031 | Msa0781390:intron | 20.0% |
| !! | GTGCAATATTCAATATTATT+TGG | - | chr5_2:63885253-63885272 | Msa0781390:intron | 20.0% |
| !!! | TAGTAATGTCAACAAATTTT+TGG | - | chr5_2:63885699-63885718 | Msa0781390:CDS | 20.0% |
| !!! | TTTTTTCTCCAATTATTATC+AGG | - | chr5_2:63885738-63885757 | Msa0781390:intron | 20.0% |
| !! | TACATATTGACATAATTCAA+GGG | + | chr5_2:63885908-63885927 | None:intergenic | 20.0% |
| !! | TTACATATTGACATAATTCA+AGG | + | chr5_2:63885909-63885928 | None:intergenic | 20.0% |
| ! | AGTATCCCTATTTATTTAGA+AGG | - | chr5_2:63882410-63882429 | Msa0781390:three_prime_UTR | 25.0% |
| ! | GTTATGTTGTAATGAATCAT+GGG | + | chr5_2:63882687-63882706 | None:intergenic | 25.0% |
| ! | AGTTATGTTGTAATGAATCA+TGG | + | chr5_2:63882688-63882707 | None:intergenic | 25.0% |
| !!! | TATCATATTTTGGAAAATGC+AGG | - | chr5_2:63883017-63883036 | Msa0781390:intron | 25.0% |
| ! | ATTAGCTCAAATAATGAAAG+TGG | + | chr5_2:63883501-63883520 | None:intergenic | 25.0% |
| ! | AATATCACGTTAAATGGAAT+TGG | + | chr5_2:63883538-63883557 | None:intergenic | 25.0% |
| !!! | TCAAAAATTGGTAATGACAA+GGG | + | chr5_2:63883588-63883607 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTGGATTGTTAAC+CGG | + | chr5_2:63883626-63883645 | None:intergenic | 25.0% |
| ! | ACAATCCAAACTAAATATGT+TGG | - | chr5_2:63883630-63883649 | Msa0781390:intron | 25.0% |
| !! | TTCCTTTTGATATTAAACCT+TGG | - | chr5_2:63883864-63883883 | Msa0781390:intron | 25.0% |
| ! | ATCCAAGGTTTAATATCAAA+AGG | + | chr5_2:63883869-63883888 | None:intergenic | 25.0% |
| ! | AACTAGAGACAAATATGAAA+TGG | + | chr5_2:63883943-63883962 | None:intergenic | 25.0% |
| ! | CAAAACGAAAACATAAACTA+AGG | + | chr5_2:63884249-63884268 | None:intergenic | 25.0% |
| !! | TATGTTTTCGTTTTGTAGTT+TGG | - | chr5_2:63884254-63884273 | Msa0781390:intron | 25.0% |
| !! | ATGTTTTCGTTTTGTAGTTT+GGG | - | chr5_2:63884255-63884274 | Msa0781390:intron | 25.0% |
| ! | TTTAGCATACAAAACTACAA+AGG | + | chr5_2:63884543-63884562 | None:intergenic | 25.0% |
| ! | TTGTAATTGAATTGTTTCCT+AGG | - | chr5_2:63884570-63884589 | Msa0781390:CDS | 25.0% |
| !! | AAGCCAGAAAAATTTGAAAT+TGG | - | chr5_2:63884646-63884665 | Msa0781390:intron | 25.0% |
| !!! | AAAATTGGTGTTTTGATTTC+AGG | - | chr5_2:63885311-63885330 | Msa0781390:CDS | 25.0% |
| !!! | AAATTGGTGTTTTGATTTCA+GGG | - | chr5_2:63885312-63885331 | Msa0781390:CDS | 25.0% |
| ! | AAAAACAATTATGTTAGGAG+TGG | - | chr5_2:63885341-63885360 | Msa0781390:CDS | 25.0% |
| !! | NNNNCTTTTTAAACGCTACA+TGG | - | chr5_2:63885570-63885589 | Msa0781390:intron | 25.0% |
| ! | ATAAAATGTTACCAAAAGAG+AGG | + | chr5_2:63885647-63885666 | None:intergenic | 25.0% |
| ! | ATTGAGTTCCTGATAATAAT+TGG | + | chr5_2:63885749-63885768 | None:intergenic | 25.0% |
| ! | TTATTATCAGGAACTCAATT+TGG | - | chr5_2:63885750-63885769 | Msa0781390:intron | 25.0% |
| !!! | GCTTTTGATTTATTGACTAA+AGG | - | chr5_2:63885817-63885836 | Msa0781390:intron | 25.0% |
| !! | TTTTGGAGATTTTGGAGAAA+GGG | + | chr5_2:63882513-63882532 | None:intergenic | 30.0% |
| !! | ATTTTGGAGATTTTGGAGAA+AGG | + | chr5_2:63882514-63882533 | None:intergenic | 30.0% |
| ! | ATTTGCAAATTTTGTAGCTG+CGG | - | chr5_2:63882885-63882904 | Msa0781390:CDS | 30.0% |
| ! | GTCACAGTGATATCATATTT+TGG | - | chr5_2:63883007-63883026 | Msa0781390:intron | 30.0% |
| AATATCCTTGGAAAAATTGC+AGG | + | chr5_2:63883185-63883204 | None:intergenic | 30.0% | |
| ! | TGCAATTTTTCCAAGGATAT+TGG | - | chr5_2:63883184-63883203 | Msa0781390:intron | 30.0% |
| ! | GCAATTTTTCCAAGGATATT+GGG | - | chr5_2:63883185-63883204 | Msa0781390:intron | 30.0% |
| CTCATTTCCTAATTAGGTAA+AGG | - | chr5_2:63883282-63883301 | Msa0781390:intron | 30.0% | |
| TTTCCTAATTAGGTAAAGGA+AGG | - | chr5_2:63883286-63883305 | Msa0781390:intron | 30.0% | |
| !! | CTCAAAAATTGGTAATGACA+AGG | + | chr5_2:63883589-63883608 | None:intergenic | 30.0% |
| !! | CATTACCAATTTTTGAGAGT+CGG | - | chr5_2:63883592-63883611 | Msa0781390:intron | 30.0% |
| TGAGACCAACATATTTAGTT+TGG | + | chr5_2:63883638-63883657 | None:intergenic | 30.0% | |
| ! | TTTTATGTGATTTAGTGTGG+TGG | - | chr5_2:63883721-63883740 | Msa0781390:CDS | 30.0% |
| GAAGTAACAGAAGTTACAAA+AGG | - | chr5_2:63883758-63883777 | Msa0781390:intron | 30.0% | |
| CAAAAGGAAACTTTGAACAA+AGG | + | chr5_2:63883853-63883872 | None:intergenic | 30.0% | |
| ATTTAGATCAGTGAATCTAG+TGG | + | chr5_2:63883906-63883925 | None:intergenic | 30.0% | |
| ACTAGATTCACTGATCTAAA+TGG | - | chr5_2:63883905-63883924 | Msa0781390:intron | 30.0% | |
| !!! | TAGTTTTAGTGAGTATACTG+TGG | - | chr5_2:63883958-63883977 | Msa0781390:intron | 30.0% |
| !! | AAACATCAATTTTTAGGGGT+AGG | - | chr5_2:63884136-63884155 | Msa0781390:CDS | 30.0% |
| GTAGATAAGCTCAAATAAGT+CGG | + | chr5_2:63884291-63884310 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | - | chr5_2:63884291-63884310 | Msa0781390:CDS | 30.0% | |
| GTTGTTCTCATAGACTATTA+TGG | + | chr5_2:63884394-63884413 | None:intergenic | 30.0% | |
| ! | AAAACTACAAAGGTTTTGCT+TGG | + | chr5_2:63884533-63884552 | None:intergenic | 30.0% |
| TAATTGAATTGTTTCCTAGG+TGG | - | chr5_2:63884573-63884592 | Msa0781390:CDS | 30.0% | |
| AAACTTCTTCGCTGAATAAA+GGG | + | chr5_2:63884788-63884807 | None:intergenic | 30.0% | |
| ! | GATTATTGCTTTGAATGTGT+TGG | - | chr5_2:63884892-63884911 | Msa0781390:intron | 30.0% |
| ATGAAAAAAATGTGGTTGGA+AGG | + | chr5_2:63885120-63885139 | None:intergenic | 30.0% | |
| CATTGTGGATGAAAAAAATG+TGG | + | chr5_2:63885128-63885147 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCATCCACAATGCT+TGG | - | chr5_2:63885130-63885149 | Msa0781390:CDS | 30.0% |
| TTGCACACAAATGAAGAATA+TGG | + | chr5_2:63885239-63885258 | None:intergenic | 30.0% | |
| ! | TACTTGTTGAAAGAATGGAT+TGG | - | chr5_2:63885288-63885307 | Msa0781390:intron | 30.0% |
| !! | GAAAGAATGGATTGGAAAAT+TGG | - | chr5_2:63885296-63885315 | Msa0781390:intron | 30.0% |
| TGGGGAAAAACAATTATGTT+AGG | - | chr5_2:63885336-63885355 | Msa0781390:CDS | 30.0% | |
| AGATCAAATATAGAAGTCAG+AGG | + | chr5_2:63885946-63885965 | None:intergenic | 30.0% | |
| ! | CTTTACATCTTATGGGTTGT+TGG | + | chr5_2:63882648-63882667 | None:intergenic | 35.0% |
| CAACAACCCATAAGATGTAA+AGG | - | chr5_2:63882646-63882665 | Msa0781390:intron | 35.0% | |
| CACACACCTTTACATCTTAT+GGG | + | chr5_2:63882655-63882674 | None:intergenic | 35.0% | |
| ACACACACCTTTACATCTTA+TGG | + | chr5_2:63882656-63882675 | None:intergenic | 35.0% | |
| AAGATCTCCTCAATTATCAG+TGG | + | chr5_2:63882931-63882950 | None:intergenic | 35.0% | |
| GATAATTGAGGAGATCTTTG+TGG | - | chr5_2:63882933-63882952 | Msa0781390:CDS | 35.0% | |
| CTTCCTTCCTTTACCTAATT+AGG | + | chr5_2:63883292-63883311 | None:intergenic | 35.0% | |
| TTATTACTACCCTGTTTGTG+TGG | - | chr5_2:63883319-63883338 | Msa0781390:intron | 35.0% | |
| TCATTGCAACCTAAGAACTT+TGG | + | chr5_2:63883465-63883484 | None:intergenic | 35.0% | |
| CATTGTTATCCCAATCTTCA+TGG | - | chr5_2:63883784-63883803 | Msa0781390:intron | 35.0% | |
| GTATCATATCTAAGCATCCA+AGG | + | chr5_2:63883884-63883903 | None:intergenic | 35.0% | |
| TGGATCAATCTTGAGTAGAT+TGG | + | chr5_2:63883993-63884012 | None:intergenic | 35.0% | |
| TCAACAGGTATGCAAATTCA+AGG | - | chr5_2:63884055-63884074 | Msa0781390:intron | 35.0% | |
| GAAAACAGCAAATGTTGAAC+CGG | - | chr5_2:63884168-63884187 | Msa0781390:CDS | 35.0% | |
| AAAACAGCAAATGTTGAACC+GGG | - | chr5_2:63884169-63884188 | Msa0781390:CDS | 35.0% | |
| !!! | ACAGTAGCTATTTTTGGACT+CGG | - | chr5_2:63884196-63884215 | Msa0781390:intron | 35.0% |
| !! | ATTTTTGGACTCGGATGTAT+TGG | - | chr5_2:63884205-63884224 | Msa0781390:intron | 35.0% |
| CAAACTTCTTCGCTGAATAA+AGG | + | chr5_2:63884789-63884808 | None:intergenic | 35.0% | |
| CTTTATTCAGCGAAGAAGTT+TGG | - | chr5_2:63884787-63884806 | Msa0781390:intron | 35.0% | |
| CTTTGTAAATCCTGGAGAAT+TGG | - | chr5_2:63884819-63884838 | Msa0781390:intron | 35.0% | |
| !! | GATTTGTTTTCCAATTCTCC+AGG | + | chr5_2:63884832-63884851 | None:intergenic | 35.0% |
| GTTATCATAGAGATGACTGA+TGG | - | chr5_2:63884862-63884881 | Msa0781390:intron | 35.0% | |
| ! | TTGCTTTGAATGTGTTGGTA+TGG | - | chr5_2:63884897-63884916 | Msa0781390:intron | 35.0% |
| AGCATATGCTTCATGTAGAA+AGG | - | chr5_2:63884936-63884955 | Msa0781390:intron | 35.0% | |
| GATACTTTGCACCAATAACA+TGG | + | chr5_2:63885026-63885045 | None:intergenic | 35.0% | |
| AGATTAGTAATCGGCAAAGT+CGG | + | chr5_2:63885051-63885070 | None:intergenic | 35.0% | |
| AGTTGGCAGAGATTAGTAAT+CGG | + | chr5_2:63885060-63885079 | None:intergenic | 35.0% | |
| GTGGATGAAAAAAATGTGGT+TGG | + | chr5_2:63885124-63885143 | None:intergenic | 35.0% | |
| ! | CTGCATACTTGTTGAAAGAA+TGG | - | chr5_2:63885283-63885302 | Msa0781390:intron | 35.0% |
| TTGATACTCAACTTAGATCC+TGG | + | chr5_2:63885372-63885391 | None:intergenic | 35.0% | |
| !!! | AGTACTGATGTCCTTTTTCA+AGG | - | chr5_2:63885393-63885412 | Msa0781390:CDS | 35.0% |
| !!! | GTACTGATGTCCTTTTTCAA+GGG | - | chr5_2:63885394-63885413 | Msa0781390:CDS | 35.0% |
| TAAGAGTCTTCCCTTGAAAA+AGG | + | chr5_2:63885407-63885426 | None:intergenic | 35.0% | |
| !! | TTTTCAAGGGAAGACTCTTA+TGG | - | chr5_2:63885407-63885426 | Msa0781390:CDS | 35.0% |
| TTTCAAGGGAAGACTCTTAT+GGG | - | chr5_2:63885408-63885427 | Msa0781390:CDS | 35.0% | |
| ACTCTTATGGGGTCTATATT+TGG | - | chr5_2:63885420-63885439 | Msa0781390:intron | 35.0% | |
| ! | TTTTAAACGCTACATGGACA+AGG | - | chr5_2:63885576-63885595 | Msa0781390:intron | 35.0% |
| ! | TATGATCTCTTCCTCTCTTT+TGG | - | chr5_2:63885633-63885652 | Msa0781390:intron | 35.0% |
| ! | GGATGATTTTGTTACACATG+AGG | - | chr5_2:63885771-63885790 | Msa0781390:intron | 35.0% |
| ! | TGATTTTGTTACACATGAGG+TGG | - | chr5_2:63885774-63885793 | Msa0781390:intron | 35.0% |
| TGACTAAAGGAGAATGTCTT+CGG | - | chr5_2:63885830-63885849 | Msa0781390:intron | 35.0% | |
| TCAATTATCAGTGGTTCACC+TGG | + | chr5_2:63882922-63882941 | None:intergenic | 40.0% | |
| AGGTGAACCACTGATAATTG+AGG | - | chr5_2:63882921-63882940 | Msa0781390:CDS | 40.0% | |
| GATATCACTGTGACAAAGAG+AGG | + | chr5_2:63883001-63883020 | None:intergenic | 40.0% | |
| ATCCTTGGAAAAATTGCAGG+AGG | + | chr5_2:63883182-63883201 | None:intergenic | 40.0% | |
| ATATTGGGTCATGAGGCAAT+TGG | - | chr5_2:63883200-63883219 | Msa0781390:intron | 40.0% | |
| TATTGGGTCATGAGGCAATT+GGG | - | chr5_2:63883201-63883220 | Msa0781390:intron | 40.0% | |
| AGTGTATGACCACACAAACA+GGG | + | chr5_2:63883331-63883350 | None:intergenic | 40.0% | |
| CTCACATTGCCAAAGTTCTT+AGG | - | chr5_2:63883453-63883472 | Msa0781390:CDS | 40.0% | |
| TTGGATTGTTAACCGGACTT+CGG | + | chr5_2:63883619-63883638 | None:intergenic | 40.0% | |
| ! | TTTAGTGTGGTGGAAAGTGT+TGG | - | chr5_2:63883731-63883750 | Msa0781390:intron | 40.0% |
| CACAATCAGCCATGAAGATT+GGG | + | chr5_2:63883796-63883815 | None:intergenic | 40.0% | |
| TCACAATCAGCCATGAAGAT+TGG | + | chr5_2:63883797-63883816 | None:intergenic | 40.0% | |
| AAACAGCAAATGTTGAACCG+GGG | - | chr5_2:63884170-63884189 | Msa0781390:intron | 40.0% | |
| ! | ACTCGGATGTATTGGATTAG+CGG | - | chr5_2:63884213-63884232 | Msa0781390:intron | 40.0% |
| !! | GATGTATTGGATTAGCGGTA+TGG | - | chr5_2:63884218-63884237 | Msa0781390:intron | 40.0% |
| ! | TTTTGTAGTTTGGGCCTGTT+TGG | - | chr5_2:63884264-63884283 | Msa0781390:intron | 40.0% |
| TCAAATAAGTCGGTCCAAAC+AGG | + | chr5_2:63884281-63884300 | None:intergenic | 40.0% | |
| TGTGGAGCAACTAGGATTAT+AGG | - | chr5_2:63884613-63884632 | Msa0781390:intron | 40.0% | |
| AGCAACTAGGATTATAGGTG+TGG | - | chr5_2:63884618-63884637 | Msa0781390:intron | 40.0% | |
| GTCACAGACTTTGTAAATCC+TGG | - | chr5_2:63884811-63884830 | Msa0781390:intron | 40.0% | |
| GGAAAACAAATCTGTGAGTC+AGG | - | chr5_2:63884840-63884859 | Msa0781390:intron | 40.0% | |
| ATCATAGAGATGACTGATGG+AGG | - | chr5_2:63884865-63884884 | Msa0781390:intron | 40.0% | |
| ! | ATGTGTTGGTATGGCATCAT+TGG | - | chr5_2:63884906-63884925 | Msa0781390:intron | 40.0% |
| TGGAAGGATAGACTCCATAA+GGG | + | chr5_2:63885104-63885123 | None:intergenic | 40.0% | |
| TTGGAAGGATAGACTCCATA+AGG | + | chr5_2:63885105-63885124 | None:intergenic | 40.0% | |
| !!! | TGGTGTTTTGATTTCAGGGT+TGG | - | chr5_2:63885316-63885335 | Msa0781390:CDS | 40.0% |
| !!! | GGTGTTTTGATTTCAGGGTT+GGG | - | chr5_2:63885317-63885336 | Msa0781390:CDS | 40.0% |
| !!! | GTGTTTTGATTTCAGGGTTG+GGG | - | chr5_2:63885318-63885337 | Msa0781390:CDS | 40.0% |
| TTCAAGGGAAGACTCTTATG+GGG | - | chr5_2:63885409-63885428 | Msa0781390:CDS | 40.0% | |
| CTTATGGGGTCTATATTTGG+AGG | - | chr5_2:63885423-63885442 | Msa0781390:intron | 40.0% | |
| ! | AATGTCTTCGGTGTGTGATT+TGG | - | chr5_2:63885842-63885861 | Msa0781390:intron | 40.0% |
| TGCAGCAGGTTTATCTTCCA+TGG | + | chr5_2:63882611-63882630 | None:intergenic | 45.0% | |
| ATACGAATCCTAGCTTCACG+TGG | + | chr5_2:63882970-63882989 | None:intergenic | 45.0% | |
| ! | AGCCTCCTGCAATTTTTCCA+AGG | - | chr5_2:63883177-63883196 | Msa0781390:intron | 45.0% |
| TCCAAGGATATTGGGTCATG+AGG | - | chr5_2:63883193-63883212 | Msa0781390:intron | 45.0% | |
| GAGTGTATGACCACACAAAC+AGG | + | chr5_2:63883332-63883351 | None:intergenic | 45.0% | |
| TTGTTAACTACGTGCATGCG+TGG | + | chr5_2:63883354-63883373 | None:intergenic | 45.0% | |
| TCGGTCCGACTCTCAAAAAT+TGG | + | chr5_2:63883600-63883619 | None:intergenic | 45.0% | |
| TTGATACACCACAACTGAGG+AGG | + | chr5_2:63884039-63884058 | None:intergenic | 45.0% | |
| CTGTTGATACACCACAACTG+AGG | + | chr5_2:63884042-63884061 | None:intergenic | 45.0% | |
| CTCAGTTGTGGTGTATCAAC+AGG | - | chr5_2:63884040-63884059 | Msa0781390:intron | 45.0% | |
| AAAATAGCTACTGTCGACCC+CGG | + | chr5_2:63884190-63884209 | None:intergenic | 45.0% | |
| !! | GGGTCGACAGTAGCTATTTT+TGG | - | chr5_2:63884190-63884209 | Msa0781390:intron | 45.0% |
| ATTGTTTCCTAGGTGGCTGA+AGG | - | chr5_2:63884580-63884599 | Msa0781390:CDS | 45.0% | |
| CTAGACTTTGTGGAGCAACT+AGG | - | chr5_2:63884605-63884624 | Msa0781390:intron | 45.0% | |
| CTTCTTCGCTGAATAAAGGG+AGG | + | chr5_2:63884785-63884804 | None:intergenic | 45.0% | |
| CTAATCTCTGCCAACTGTCA+TGG | - | chr5_2:63885064-63885083 | Msa0781390:intron | 45.0% | |
| CAACTAGACACCATGACAGT+TGG | + | chr5_2:63885077-63885096 | None:intergenic | 45.0% | |
| CAACTGTCATGGTGTCTAGT+TGG | - | chr5_2:63885075-63885094 | Msa0781390:intron | 45.0% | |
| AAGGATAGACTCCATAAGGG+TGG | + | chr5_2:63885101-63885120 | None:intergenic | 45.0% | |
| GGATCTCTCAAGCAAGGTTT+CGG | + | chr5_2:63885158-63885177 | None:intergenic | 45.0% | |
| CAAAGTTGCATTAGTCCGAG+TGG | + | chr5_2:63885191-63885210 | None:intergenic | 45.0% | |
| CACTCGGACTAATGCAACTT+TGG | - | chr5_2:63885189-63885208 | Msa0781390:intron | 45.0% | |
| ! | TCTTCGGTGTGTGATTTGGA+TGG | - | chr5_2:63885846-63885865 | Msa0781390:intron | 45.0% |
| !! | TAATAAAATAGTATATAATA+TGG | + | chr5_2:63882461-63882480 | None:intergenic | 5.0% |
| !!! | CATAATATTTTTTTTTTTTA+AGG | + | chr5_2:63882828-63882847 | None:intergenic | 5.0% |
| !!! | TTAATTTTTTAACTTTTTTT+TGG | - | chr5_2:63883407-63883426 | Msa0781390:CDS | 5.0% |
| CTTCCATGGCGATGAGTCAA+GGG | + | chr5_2:63882597-63882616 | None:intergenic | 50.0% | |
| TCTTCCATGGCGATGAGTCA+AGG | + | chr5_2:63882598-63882617 | None:intergenic | 50.0% | |
| ATCCTAGCTTCACGTGGCAT+TGG | + | chr5_2:63882964-63882983 | None:intergenic | 50.0% | |
| GCCTCATGACCCAATATCCT+TGG | + | chr5_2:63883197-63883216 | None:intergenic | 50.0% | |
| !! | TGTGGTGGAAAGTGTTGGAG+AGG | - | chr5_2:63883736-63883755 | Msa0781390:intron | 50.0% |
| ATCCAGCAATTCCTCCCAAC+AGG | - | chr5_2:63884008-63884027 | Msa0781390:intron | 50.0% | |
| TCCAGCAATTCCTCCCAACA+GGG | - | chr5_2:63884009-63884028 | Msa0781390:intron | 50.0% | |
| !! | TTTTAGGGGTAGGTGCTGCA+TGG | - | chr5_2:63884146-63884165 | Msa0781390:CDS | 50.0% |
| GCTGAAGGAGCTAGACTTTG+TGG | - | chr5_2:63884595-63884614 | Msa0781390:intron | 50.0% | |
| TGTCTAGTTGGCCACCCTTA+TGG | - | chr5_2:63885087-63885106 | Msa0781390:intron | 50.0% | |
| ! | GGTTTCGGATCCAAGCATTG+TGG | + | chr5_2:63885143-63885162 | None:intergenic | 50.0% |
| TGCATTAGTCCGAGTGGAAC+TGG | + | chr5_2:63885185-63885204 | None:intergenic | 50.0% | |
| ATGTTAGGAGTGGACAAGCC+AGG | - | chr5_2:63885351-63885370 | Msa0781390:CDS | 50.0% | |
| !! | AGTCAAGGGAGGGTACTGGA+AGG | + | chr5_2:63882583-63882602 | None:intergenic | 55.0% |
| ! | GATGAGTCAAGGGAGGGTAC+TGG | + | chr5_2:63882587-63882606 | None:intergenic | 55.0% |
| CATGGCGATGAGTCAAGGGA+GGG | + | chr5_2:63882593-63882612 | None:intergenic | 55.0% | |
| ! | CCTTCACTTGTTGCTGCAGC+AGG | + | chr5_2:63882625-63882644 | None:intergenic | 55.0% |
| CCTGCTGCAGCAACAAGTGA+AGG | - | chr5_2:63882622-63882641 | Msa0781390:intron | 55.0% | |
| ! | CTAGCTTCACGTGGCATTGG+TGG | + | chr5_2:63882961-63882980 | None:intergenic | 55.0% |
| CACCAATGCCACGTGAAGCT+AGG | - | chr5_2:63882959-63882978 | Msa0781390:CDS | 55.0% | |
| TTGAGAGTCGGACCGAAGTC+CGG | - | chr5_2:63883604-63883623 | Msa0781390:intron | 55.0% | |
| ! | TCTAGCTCCTTCAGCCACCT+AGG | + | chr5_2:63884590-63884609 | None:intergenic | 55.0% |
| GGACTCGGATCTCTCAAGCA+AGG | + | chr5_2:63885164-63885183 | None:intergenic | 55.0% | |
| GATCCGAGTCCAGTTCCACT+CGG | - | chr5_2:63885173-63885192 | Msa0781390:intron | 55.0% | |
| AGTCCGAGTGGAACTGGACT+CGG | + | chr5_2:63885179-63885198 | None:intergenic | 55.0% | |
| CCATGGCGATGAGTCAAGGG+AGG | + | chr5_2:63882594-63882613 | None:intergenic | 60.0% | |
| CCTCCCTTGACTCATCGCCA+TGG | - | chr5_2:63882591-63882610 | Msa0781390:intron | 60.0% | |
| GCCCTGTTGGGAGGAATTGC+TGG | + | chr5_2:63884013-63884032 | None:intergenic | 60.0% | |
| ! | CTGAGGAGGCATGCCCTGTT+GGG | + | chr5_2:63884025-63884044 | None:intergenic | 60.0% |
| ! | ACTGAGGAGGCATGCCCTGT+TGG | + | chr5_2:63884026-63884045 | None:intergenic | 60.0% |
| AGGGCATGCCTCCTCAGTTG+TGG | - | chr5_2:63884028-63884047 | Msa0781390:intron | 60.0% | |
| GCTGCGGTGTGTCGCAAACC+AGG | - | chr5_2:63882901-63882920 | Msa0781390:CDS | 65.0% | |
| ! | AGGAGGCATGCCCTGTTGGG+AGG | + | chr5_2:63884022-63884041 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 63882358 | 63885982 | 63882358 | ID=Msa0781390;Name=Msa0781390 |
| chr5_2 | mRNA | 63882358 | 63885982 | 63882358 | ID=Msa0781390-mRNA-1;Parent=Msa0781390;Name=Msa0781390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=96|0.88|0.9|1|0.88|0.8|10|106|378 |
| chr5_2 | exon | 63882358 | 63882580 | 63882358 | ID=Msa0781390-mRNA-1:exon:18995;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63882876 | 63883007 | 63882876 | ID=Msa0781390-mRNA-1:exon:18994;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63883383 | 63883543 | 63883383 | ID=Msa0781390-mRNA-1:exon:18993;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63883673 | 63883748 | 63883673 | ID=Msa0781390-mRNA-1:exon:18992;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63884106 | 63884188 | 63884106 | ID=Msa0781390-mRNA-1:exon:18991;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63884279 | 63884604 | 63884279 | ID=Msa0781390-mRNA-1:exon:18990;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63885118 | 63885164 | 63885118 | ID=Msa0781390-mRNA-1:exon:18989;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63885302 | 63885438 | 63885302 | ID=Msa0781390-mRNA-1:exon:18988;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63885673 | 63885752 | 63885673 | ID=Msa0781390-mRNA-1:exon:18987;Parent=Msa0781390-mRNA-1 |
| chr5_2 | exon | 63885909 | 63885982 | 63885909 | ID=Msa0781390-mRNA-1:exon:18986;Parent=Msa0781390-mRNA-1 |
| chr5_2 | five_prime_UTR | 63885909 | 63885982 | 63885909 | ID=Msa0781390-mRNA-1:five_prime_utr;Parent=Msa0781390-mRNA-1 |
| chr5_2 | five_prime_UTR | 63885731 | 63885752 | 63885731 | ID=Msa0781390-mRNA-1:five_prime_utr;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63885673 | 63885730 | 63885673 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63885302 | 63885438 | 63885302 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63885118 | 63885164 | 63885118 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63884279 | 63884604 | 63884279 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63884106 | 63884188 | 63884106 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63883673 | 63883748 | 63883673 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63883383 | 63883543 | 63883383 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63882876 | 63883007 | 63882876 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | CDS | 63882464 | 63882580 | 63882464 | ID=Msa0781390-mRNA-1:cds;Parent=Msa0781390-mRNA-1 |
| chr5_2 | three_prime_UTR | 63882358 | 63882463 | 63882358 | ID=Msa0781390-mRNA-1:three_prime_utr;Parent=Msa0781390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
