AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437010 MtrunA17_Chr7g0263071 100.000 216 0 0 1 216 1 216 7.42e-162 445
Msa0437010 MtrunA17_Chr1g0182321 94.907 216 11 0 1 216 1 216 7.40e-157 432
Msa0437010 MtrunA17_Chr1g0182301 94.444 216 12 0 1 216 1 216 4.68e-156 431
Msa0437010 MtrunA17_Chr1g0212521 94.634 205 11 0 11 215 11 215 8.55e-145 402
Msa0437010 MtrunA17_Chr4g0030911 95.122 205 9 1 11 215 11 214 7.16e-144 399
Msa0437010 MtrunA17_Chr2g0327911 77.315 216 45 3 1 215 1 213 2.60e-117 332
Msa0437010 MtrunA17_Chr7g0250531 61.058 208 70 4 11 216 4 202 2.87e-87 256
Msa0437010 MtrunA17_Chr4g0055651 59.135 208 74 4 11 216 4 202 4.67e-86 253
Msa0437010 MtrunA17_Chr8g0335471 59.809 209 72 4 11 216 4 203 1.63e-84 249
Msa0437010 MtrunA17_Chr2g0276931 55.288 208 81 4 11 215 5 203 8.75e-80 237
Msa0437010 MtrunA17_Chr6g0458081 47.368 209 103 4 12 214 3 210 1.16e-60 189
Msa0437010 MtrunA17_Chr2g0290891 46.890 209 103 3 12 213 3 210 8.42e-60 186
Msa0437010 MtrunA17_Chr3g0112681 45.327 214 104 4 11 216 8 216 1.47e-59 186
Msa0437010 MtrunA17_Chr4g0032201 42.991 214 116 3 7 216 4 215 3.37e-59 185
Msa0437010 MtrunA17_Chr2g0283131 44.495 218 108 3 7 216 5 217 1.28e-57 181
Msa0437010 MtrunA17_Chr4g0046261 44.954 218 107 5 7 216 5 217 3.93e-57 180
Msa0437010 MtrunA17_Chr2g0276941 43.128 211 114 2 11 216 11 220 4.31e-57 180
Msa0437010 MtrunA17_Chr4g0040781 45.413 218 106 5 7 216 5 217 1.33e-56 179
Msa0437010 MtrunA17_Chr1g0189361 42.991 214 107 4 13 214 12 222 8.04e-56 177
Msa0437010 MtrunA17_Chr2g0315551 43.721 215 114 3 7 216 5 217 1.50e-55 176
Msa0437010 MtrunA17_Chr1g0180291 48.309 207 96 7 12 214 11 210 1.01e-54 174
Msa0437010 MtrunA17_Chr3g0123821 42.453 212 108 4 13 214 14 221 1.82e-54 173
Msa0437010 MtrunA17_Chr7g0265001 45.673 208 101 5 12 214 13 213 2.24e-54 173
Msa0437010 MtrunA17_Chr8g0349711 47.312 186 91 3 14 195 5 187 2.59e-54 172
Msa0437010 MtrunA17_Chr8g0381841 43.396 212 111 4 13 216 15 225 4.00e-54 172
Msa0437010 MtrunA17_Chr3g0130271 44.712 208 104 5 11 214 8 208 1.89e-53 170
Msa0437010 MtrunA17_Chr8g0384311 44.393 214 105 7 6 214 4 208 3.78e-53 169
Msa0437010 MtrunA17_Chr8g0349681 42.995 207 115 2 9 213 378 583 5.28e-53 179
Msa0437010 MtrunA17_Chr8g0349681 45.763 177 91 2 12 184 172 347 4.92e-48 166
Msa0437010 MtrunA17_Chr8g0349681 49.045 157 79 1 14 170 12 167 5.17e-46 160
Msa0437010 MtrunA17_Chr2g0319951 49.123 171 86 1 7 177 5 174 5.46e-53 169
Msa0437010 MtrunA17_Chr1g0159481 45.411 207 103 6 11 213 13 213 1.59e-52 168
Msa0437010 MtrunA17_Chr1g0174281 41.589 214 111 4 13 215 13 223 1.85e-52 168
Msa0437010 MtrunA17_Chr2g0325091 42.991 214 108 4 11 216 7 214 1.90e-52 168
Msa0437010 MtrunA17_Chr1g0197331 42.857 217 115 6 1 214 1 211 7.26e-52 166
Msa0437010 MtrunA17_Chr7g0234201 41.951 205 113 3 14 214 12 214 7.28e-52 166
Msa0437010 MtrunA17_Chr8g0346421 46.667 165 87 1 13 177 24 187 7.12e-51 164
Msa0437010 MtrunA17_Chr8g0351861 42.647 204 113 2 13 213 14 216 1.41e-50 164
Msa0437010 MtrunA17_Chr6g0482721 41.262 206 116 2 13 214 10 214 5.69e-50 162
Msa0437010 MtrunA17_Chr7g0275991 40.099 202 115 2 7 203 12 212 1.30e-49 161
Msa0437010 MtrunA17_Chr7g0214241 39.130 207 119 4 14 214 14 219 3.22e-49 160
Msa0437010 MtrunA17_Chr8g0392931 44.076 211 104 4 13 214 12 217 1.73e-47 155
Msa0437010 MtrunA17_Chr7g0231131 45.455 165 89 1 13 177 13 176 1.92e-47 155
Msa0437010 MtrunA17_Chr3g0109721 38.191 199 111 4 17 214 12 199 1.12e-44 147
Msa0437010 MtrunA17_Chr1g0199331 44.242 165 90 2 16 179 32 195 1.18e-44 147
Msa0437010 MtrunA17_Chr8g0390561 39.698 199 109 4 17 215 11 198 1.30e-44 147
Msa0437010 MtrunA17_Chr5g0433561 36.869 198 115 3 17 214 12 199 9.44e-44 145
Msa0437010 MtrunA17_Chr8g0382221 38.191 199 110 3 17 205 11 206 9.92e-42 140
Msa0437010 MtrunA17_Chr4g0034871 39.901 203 108 7 5 198 2 199 7.12e-41 138
Msa0437010 MtrunA17_Chr5g0400131 36.364 209 127 3 5 213 3 205 1.08e-39 135
Msa0437010 MtrunA17_Chr3g0123971 42.405 158 90 1 17 174 11 167 3.35e-39 134
Msa0437010 MtrunA17_Chr4g0055081 40.000 170 97 2 5 174 3 167 1.36e-38 132
Msa0437010 MtrunA17_Chr2g0331691 37.379 206 115 6 15 214 10 207 7.70e-37 128
Msa0437010 MtrunA17_Chr6g0466301 40.120 167 94 3 15 175 8 174 2.97e-36 126
Msa0437010 MtrunA17_Chr6g0465491 40.120 167 94 3 15 175 8 174 2.97e-36 126
Msa0437010 MtrunA17_Chr8g0383261 37.853 177 104 2 15 185 12 188 6.01e-36 125
Msa0437010 MtrunA17_Chr4g0004661 37.864 206 114 6 15 214 64 261 6.88e-36 127
Msa0437010 MtrunA17_Chr1g0201121 35.176 199 121 3 15 205 8 206 1.53e-35 124
Msa0437010 MtrunA17_Chr6g0466161 34.444 180 112 3 32 205 7 186 8.29e-27 102
Msa0437010 MtrunA17_Chr6g0465471 33.889 180 113 3 32 205 7 186 4.53e-26 100
Msa0437010 MtrunA17_Chr1g0178291 41.358 162 87 3 18 179 431 584 1.34e-25 103
Msa0437010 MtrunA17_Chr2g0325101 32.934 167 99 5 15 170 6 170 1.87e-25 98.2
Msa0437010 MtrunA17_Chr4g0037021 32.979 188 113 6 15 191 6 191 2.74e-25 97.8
Msa0437010 MtrunA17_Chr3g0117931 32.335 167 100 5 15 170 8 172 1.52e-24 96.3
Msa0437010 MtrunA17_Chr3g0138121 30.286 175 117 4 3 177 2 171 2.46e-24 95.9
Msa0437010 MtrunA17_Chr3g0138111 30.286 175 117 4 3 177 2 171 2.98e-24 95.9
Msa0437010 MtrunA17_Chr3g0138101 30.286 175 117 4 3 177 2 171 3.08e-24 95.9
Msa0437010 MtrunA17_Chr8g0371501 32.335 167 100 6 15 170 6 170 3.62e-23 92.4
Msa0437010 MtrunA17_Chr6g0486041 31.138 167 102 5 15 170 6 170 4.78e-23 92.4
Msa0437010 MtrunA17_Chr5g0405791 32.335 167 100 6 15 170 6 170 6.90e-23 91.7
Msa0437010 MtrunA17_Chr4g0046211 34.677 124 78 3 15 137 6 127 2.58e-22 88.6
Msa0437010 MtrunA17_Chr6g0466431 35.789 95 52 1 15 109 8 93 6.20e-17 73.2
Msa0437010 MtrunA17_Chr6g0465611 35.789 95 52 1 15 109 8 93 6.20e-17 73.2
Msa0437010 MtrunA17_Chr5g0443631 25.466 161 111 3 16 170 105 262 9.23e-13 65.9
Msa0437010 MtrunA17_Chr5g0434561 30.488 164 95 6 16 170 20 173 6.59e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437010 AT3G53610.2 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa0437010 AT3G53610.3 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa0437010 AT3G53610.1 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa0437010 AT5G59840.1 95.146 206 10 0 11 216 11 216 6.76e-146 405
Msa0437010 AT3G46060.2 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa0437010 AT3G46060.3 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa0437010 AT3G46060.1 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa0437010 AT5G03520.1 86.916 214 27 1 1 214 1 213 6.44e-131 367
Msa0437010 AT3G09900.1 85.116 215 31 1 1 214 1 215 2.41e-128 361
Msa0437010 AT5G03520.2 86.061 165 22 1 50 214 40 203 8.03e-104 298
Msa0437010 AT1G02130.1 60.287 209 71 4 11 216 4 203 1.94e-88 259
Msa0437010 AT4G17530.1 59.135 208 74 4 11 216 4 202 1.05e-83 247
Msa0437010 AT5G47200.1 58.654 208 75 4 11 216 4 202 5.61e-83 245
Msa0437010 AT3G11730.1 56.938 209 78 4 11 215 4 204 1.03e-80 240
Msa0437010 AT4G17160.1 48.058 206 102 3 12 215 3 205 1.16e-64 199
Msa0437010 AT4G35860.1 48.571 210 101 4 12 215 3 211 2.34e-64 198
Msa0437010 AT4G17170.1 47.143 210 104 4 12 215 3 211 8.76e-62 192
Msa0437010 AT1G09630.1 44.860 214 113 2 7 216 4 216 4.54e-61 190
Msa0437010 AT3G46830.1 43.636 220 108 3 7 216 4 217 9.74e-58 182
Msa0437010 AT3G46830.2 43.636 220 108 3 7 216 4 217 9.74e-58 182
Msa0437010 AT4G18430.1 44.907 216 106 3 7 214 5 215 1.03e-57 182
Msa0437010 AT1G16920.1 45.581 215 105 4 7 214 5 214 2.66e-57 181
Msa0437010 AT1G07410.1 42.056 214 117 3 7 216 4 214 3.69e-57 180
Msa0437010 AT5G59150.1 42.326 215 118 3 7 216 4 217 4.61e-57 180
Msa0437010 AT5G60860.1 44.954 218 107 5 7 216 5 217 2.77e-56 178
Msa0437010 AT4G39990.1 44.340 212 107 4 13 216 15 223 1.17e-55 177
Msa0437010 AT3G15060.1 45.413 218 106 5 7 216 5 217 1.46e-55 176
Msa0437010 AT3G07410.1 42.995 207 112 3 13 214 10 215 1.55e-55 176
Msa0437010 AT5G45750.1 44.340 212 112 3 7 214 5 214 2.10e-55 176
Msa0437010 AT4G18800.1 44.076 211 112 3 7 214 5 212 1.19e-54 174
Msa0437010 AT5G47520.1 43.458 214 107 3 13 216 12 221 1.76e-54 174
Msa0437010 AT2G33870.1 43.379 219 110 4 7 216 5 218 2.07e-54 173
Msa0437010 AT2G43130.1 41.176 204 117 2 13 214 10 212 6.46e-54 172
Msa0437010 AT1G28550.1 43.779 217 112 4 7 216 5 218 1.26e-53 171
Msa0437010 AT1G05810.1 40.191 209 119 3 13 216 10 217 3.52e-53 170
Msa0437010 AT1G06400.1 43.256 215 110 4 7 214 5 214 8.08e-53 169
Msa0437010 AT1G05810.2 40.191 209 119 3 13 216 56 263 1.16e-52 170
Msa0437010 AT1G01200.1 47.337 169 89 0 13 181 26 194 1.22e-52 169
Msa0437010 AT5G47960.1 41.706 211 115 3 13 216 13 222 3.15e-52 168
Msa0437010 AT2G31680.1 47.879 165 85 1 13 177 10 173 3.51e-52 168
Msa0437010 AT5G03530.2 45.024 211 105 6 8 214 6 209 8.02e-52 166
Msa0437010 AT5G03530.1 45.024 211 105 6 8 214 6 209 8.02e-52 166
Msa0437010 AT1G43890.3 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa0437010 AT1G43890.1 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa0437010 AT1G43890.2 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa0437010 AT5G65270.1 40.376 213 117 4 13 216 15 226 1.28e-51 166
Msa0437010 AT1G73640.1 46.114 193 99 2 13 201 11 202 2.58e-51 166
Msa0437010 AT3G12160.1 41.315 213 110 4 13 215 13 220 5.13e-51 165
Msa0437010 AT1G18200.1 50.296 169 83 1 13 181 11 178 2.31e-50 163
Msa0437010 AT3G54840.1 44.382 178 94 3 3 179 24 197 2.41e-47 155
Msa0437010 AT3G54840.2 46.154 169 86 3 3 170 24 188 6.27e-47 153
Msa0437010 AT3G54840.3 45.399 163 87 2 18 179 2 163 2.65e-46 151
Msa0437010 AT4G35860.2 46.667 165 81 4 57 215 2 165 1.73e-44 146
Msa0437010 AT3G09910.5 45.312 192 101 4 8 197 6 195 2.91e-44 147
Msa0437010 AT3G09910.4 45.312 192 101 4 8 197 6 195 2.91e-44 147
Msa0437010 AT4G19640.1 38.191 199 113 4 17 215 12 200 4.47e-43 144
Msa0437010 AT3G09910.3 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa0437010 AT3G09910.1 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa0437010 AT3G09910.2 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa0437010 AT3G18820.1 39.109 202 112 5 5 200 2 198 3.06e-41 139
Msa0437010 AT4G39890.1 43.396 159 88 2 17 174 11 168 6.36e-41 139
Msa0437010 AT5G45130.1 36.683 199 116 5 17 215 12 200 9.86e-41 138
Msa0437010 AT2G22290.1 37.186 199 120 4 17 214 11 205 2.50e-40 137
Msa0437010 AT2G44610.1 36.667 210 127 3 5 214 3 206 5.42e-40 136
Msa0437010 AT5G10260.1 36.364 198 124 2 17 214 11 206 3.52e-39 134
Msa0437010 AT5G45130.2 36.041 197 116 5 19 215 22 208 6.41e-39 133
Msa0437010 AT1G22740.1 38.579 197 113 4 15 205 8 202 3.89e-38 131
Msa0437010 AT5G64990.1 37.374 198 121 3 17 213 9 204 8.97e-38 130
Msa0437010 AT1G52280.1 41.667 168 92 3 15 176 8 175 9.17e-38 130
Msa0437010 AT4G09720.1 38.191 199 114 4 15 205 8 205 1.10e-37 130
Msa0437010 AT5G59150.2 48.760 121 61 1 57 177 3 122 1.32e-37 129
Msa0437010 AT1G49300.2 36.058 208 120 6 5 204 2 204 1.35e-37 130
Msa0437010 AT1G49300.1 36.058 208 120 6 5 204 2 204 1.35e-37 130
Msa0437010 AT3G16100.1 37.864 206 113 4 15 214 8 204 4.87e-37 129
Msa0437010 AT4G09720.4 37.745 204 113 5 15 205 8 210 6.69e-36 125
Msa0437010 AT2G21880.1 36.058 208 111 4 15 205 9 211 1.06e-35 125
Msa0437010 AT5G64990.2 36.098 205 121 4 17 213 9 211 4.11e-35 124
Msa0437010 AT4G09720.3 35.238 210 116 4 15 205 8 216 1.60e-34 122
Msa0437010 AT5G39620.1 38.462 169 92 3 16 175 6 171 9.44e-34 120
Msa0437010 AT4G19640.2 38.843 121 74 0 17 137 12 132 7.21e-30 108
Msa0437010 AT4G19640.3 38.843 121 74 0 17 137 12 132 4.70e-29 107
Msa0437010 AT4G09720.6 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa0437010 AT4G09720.5 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa0437010 AT4G09720.2 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa0437010 AT2G21880.4 35.519 183 96 4 40 205 9 186 1.51e-27 103
Msa0437010 AT2G21880.3 35.519 183 96 4 40 205 9 186 1.51e-27 103
Msa0437010 AT4G35020.1 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa0437010 AT4G35020.2 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa0437010 AT4G35020.3 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa0437010 AT2G21880.2 32.212 208 111 5 15 205 9 203 7.35e-26 99.8
Msa0437010 AT2G44690.1 32.335 167 100 5 15 170 18 182 9.19e-26 99.8
Msa0437010 AT5G20010.1 28.972 214 142 6 3 212 2 209 1.21e-25 99.8
Msa0437010 AT3G48040.1 32.934 167 99 5 15 170 8 172 1.42e-25 99.4
Msa0437010 AT5G45970.1 31.138 167 102 5 15 170 6 170 3.74e-25 97.8
Msa0437010 AT5G62880.1 31.844 179 109 5 15 182 8 184 4.31e-25 98.2
Msa0437010 AT5G55080.1 32.716 162 105 3 16 177 14 171 7.69e-25 97.8
Msa0437010 AT3G51300.1 32.335 167 100 6 15 170 6 170 1.18e-24 96.7
Msa0437010 AT1G20090.1 34.132 167 97 6 15 170 5 169 1.51e-24 96.3
Msa0437010 AT1G75840.1 33.533 167 98 6 15 170 6 170 1.96e-24 95.9
Msa0437010 AT5G55190.1 30.286 175 117 4 3 177 2 171 3.82e-24 95.9
Msa0437010 AT5G20020.1 30.286 175 117 4 3 177 2 171 5.35e-24 95.5
Msa0437010 AT2G17800.2 32.934 167 99 6 15 170 6 170 5.78e-24 94.7
Msa0437010 AT2G17800.1 32.934 167 99 6 15 170 6 170 5.78e-24 94.7
Msa0437010 AT4G28950.1 31.515 165 102 5 15 170 6 168 1.75e-23 94.0
Msa0437010 AT4G35950.1 32.335 167 100 6 15 170 6 170 4.13e-23 92.4
Msa0437010 AT3G48040.2 32.075 159 95 5 15 162 8 164 5.88e-23 91.7
Msa0437010 AT5G62880.2 32.075 159 95 5 15 162 8 164 5.92e-22 89.4
Msa0437010 AT4G35020.4 36.207 116 71 3 15 129 6 119 8.89e-19 79.7
Msa0437010 AT4G35020.5 36.207 116 71 3 15 129 6 119 8.89e-19 79.7
Msa0437010 AT5G46025.1 35.294 102 64 2 77 177 6 106 1.55e-15 70.5
Msa0437010 AT3G51290.2 30.769 143 86 6 44 175 636 776 7.77e-13 67.4
Msa0437010 AT5G37680.1 27.215 158 108 3 16 170 20 173 4.17e-12 62.8
Msa0437010 AT2G15310.1 28.058 139 88 6 16 153 18 145 1.37e-11 62.0

Find 91 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACTCAGATTCAGTTATT+TGG 0.114215 3_2:-90973176 None:intergenic
CACGGTGTGGTTAACATTTA+TGG 0.143277 3_2:+90973148 Msa0437010:three_prime_UTR
CTCATTAAACTTCTCCTAAT+TGG 0.159282 3_2:+90970718 Msa0437010:CDS
GTTCCTGCTTTAAGCCTTAT+TGG 0.168990 3_2:-90973103 None:intergenic
AGCGAATCAAATTGCAAATA+TGG 0.180362 3_2:+90971079 Msa0437010:CDS
CACACATTCATTCTTGAGTT+TGG 0.211920 3_2:+90973231 Msa0437010:three_prime_UTR
TTAGGCTGTGCCAACTTCTA+AGG 0.253740 3_2:+90972345 Msa0437010:intron
CTGCATGTTGTGGTTCTTAA+TGG 0.257090 3_2:+90972866 Msa0437010:CDS
TCAGCATTGATTTCAAAATA+AGG 0.261517 3_2:+90971037 Msa0437010:intron
GTTGGTTAATCTTGATTGTC+TGG 0.270643 3_2:-90972804 None:intergenic
TTCCTTTCTTGAAGCCAATA+AGG 0.303057 3_2:+90973089 Msa0437010:three_prime_UTR
TCACTAGTTGAGCGTTGAAT+TGG 0.317922 3_2:-90970419 None:intergenic
TGACAATGTTAACAAGATAT+TGG 0.321340 3_2:+90972182 Msa0437010:CDS
TCACTCAGATTCAGTTATTT+GGG 0.335202 3_2:-90973175 None:intergenic
TCATCTCATGTCCAGATATC+AGG 0.336735 3_2:+90972127 Msa0437010:intron
TGGTCAAGGAACTTATGATA+TGG 0.358979 3_2:+90973365 Msa0437010:three_prime_UTR
CAAGCGCTTGCAGATGAATA+TGG 0.360715 3_2:+90972370 Msa0437010:CDS
CACTAGTTGAGCGTTGAATT+GGG 0.367061 3_2:-90970418 None:intergenic
CCTGGGCAGCCCCTGCTCCC+TGG 0.373973 3_2:-90972831 None:intergenic
ACCACACCATACTTGGCTTA+TGG 0.376966 3_2:+90973124 Msa0437010:three_prime_UTR
TGGTACCGCTATCACCAATT+AGG 0.378492 3_2:-90970732 None:intergenic
AGCAGGAACCACACCATACT+TGG 0.381808 3_2:+90973117 Msa0437010:three_prime_UTR
GCAGCCCCTGCTCCCTGGTC+TGG 0.385231 3_2:-90972826 None:intergenic
AGGAAAGTTAAGATCTAAAC+AGG 0.396767 3_2:-90970500 None:intergenic
TTGGTTAATCTTGATTGTCT+GGG 0.400239 3_2:-90972803 None:intergenic
ATAAGGACAATTGAGCTTGA+TGG 0.403140 3_2:+90971054 Msa0437010:CDS
CCAGGGAGCAGGGGCTGCCC+AGG 0.406408 3_2:+90972831 Msa0437010:CDS
CATGTCCAGATATCAGGAAT+TGG 0.411917 3_2:+90972133 Msa0437010:intron
TCGGACACTCGCAGAGGAAT+AGG 0.419201 3_2:+90970639 Msa0437010:intron
GCGAATCAAATTGCAAATAT+GGG 0.419547 3_2:+90971080 Msa0437010:CDS
AGCCTTATTGGCTTCAAGAA+AGG 0.428738 3_2:-90973091 None:intergenic
CCGTGACCATAAGCCAAGTA+TGG 0.430523 3_2:-90973130 None:intergenic
ATCGTAATCAGCACGAGCTC+TGG 0.430906 3_2:-90970692 None:intergenic
CATAATTAATTTCCCAACAT+AGG 0.431227 3_2:-90973010 None:intergenic
CCCCTGCTCCCTGGTCTGGT+TGG 0.433352 3_2:-90972822 None:intergenic
CGATTTCGAACTATCACAAC+TGG 0.433779 3_2:+90971120 Msa0437010:CDS
AGAGAAAAGGAAAGAAAAGA+GGG 0.437595 3_2:-90970465 None:intergenic
GAGAGAAAAGGAAAGAAAAG+AGG 0.440554 3_2:-90970466 None:intergenic
AGAATGAATGTGTGGATGTC+TGG 0.447349 3_2:-90973222 None:intergenic
TGCATGTTGTGGTTCTTAAT+GGG 0.450982 3_2:+90972867 Msa0437010:exon
GCCTATGTTTATTTCTGCTG+TGG 0.464643 3_2:+90973305 Msa0437010:three_prime_UTR
GAAAACGAGAAAGAGAGAAA+AGG 0.470733 3_2:-90970478 None:intergenic
GTTCTTAATGGGAAGCTTGA+GGG 0.477784 3_2:+90972878 Msa0437010:exon
TTTACTTGTATATGACGTTA+CGG 0.479177 3_2:+90971884 Msa0437010:CDS
TCATATCATATTAATTAAAA+CGG 0.479699 3_2:-90973414 None:intergenic
ATAATTAATTTCCCAACATA+GGG 0.480029 3_2:-90973009 None:intergenic
TTCCTCTTCCTCATCTTCAC+AGG 0.480337 3_2:+90970518 Msa0437010:five_prime_UTR
AGTTCGAAATCGCTCTTGAC+CGG 0.481009 3_2:-90971109 None:intergenic
AACCAACCAGACCAGGGAGC+AGG 0.489253 3_2:+90972820 Msa0437010:CDS
TGCTACTCATTGGGTTGGAA+TGG 0.494378 3_2:+90972978 Msa0437010:three_prime_UTR
ACAGTTGCTACTCATTGGGT+TGG 0.505420 3_2:+90972973 Msa0437010:three_prime_UTR
CATATTCATCTGCAAGCGCT+TGG 0.507439 3_2:-90972369 None:intergenic
CAAGATTAACCAACCAGACC+AGG 0.511143 3_2:+90972813 Msa0437010:CDS
TACCTGTGAAGATGAGGAAG+AGG 0.514002 3_2:-90970520 None:intergenic
AGCGCTTGGCCCTTAGAAGT+TGG 0.514221 3_2:-90972355 None:intergenic
AGCTTACTACCGTGGAGCCA+TGG 0.521985 3_2:+90971857 Msa0437010:intron
TCTTGAGTTTGGAGTTTCAA+AGG 0.522996 3_2:+90973242 Msa0437010:three_prime_UTR
TAGGCTGTGCCAACTTCTAA+GGG 0.524551 3_2:+90972346 Msa0437010:intron
AGAATGAAAAGAAGAATCAA+AGG 0.526724 3_2:+90970358 Msa0437010:five_prime_UTR
AACAAATCTGAATGTGGAGG+AGG 0.528959 3_2:+90972508 Msa0437010:CDS
CTGACATGGATGAAAGCAAA+CGG 0.531518 3_2:+90972217 Msa0437010:CDS
GCTTACTACCGTGGAGCCAT+GGG 0.548016 3_2:+90971858 Msa0437010:intron
TGGAAATACCTGTGAAGATG+AGG 0.548935 3_2:-90970526 None:intergenic
TGACATGGATGAAAGCAAAC+GGG 0.551245 3_2:+90972218 Msa0437010:CDS
AATGTTAACAAGATATTGGT+GGG 0.552268 3_2:+90972186 Msa0437010:CDS
TAATCAGCACGAGCTCTGGC+AGG 0.555758 3_2:-90970688 None:intergenic
CCATACTTGGCTTATGGTCA+CGG 0.557303 3_2:+90973130 Msa0437010:three_prime_UTR
ACCAACCAGACCAGGGAGCA+GGG 0.559075 3_2:+90972821 Msa0437010:CDS
GGTTCTTAATGGGAAGCTTG+AGG 0.564712 3_2:+90972877 Msa0437010:exon
TGGTTAATCTTGATTGTCTG+GGG 0.566856 3_2:-90972802 None:intergenic
CAATGTTAACAAGATATTGG+TGG 0.567581 3_2:+90972185 Msa0437010:CDS
ACTAGTTGAGCGTTGAATTG+GGG 0.584990 3_2:-90970417 None:intergenic
GAATGAAAAGAAGAATCAAA+GGG 0.587691 3_2:+90970359 Msa0437010:five_prime_UTR
AGTTTGGAGTTTCAAAGGCG+TGG 0.595003 3_2:+90973247 Msa0437010:three_prime_UTR
TCAGCACGAGCTCTGGCAGG+TGG 0.599524 3_2:-90970685 None:intergenic
GTAAAATACCCATGGCTCCA+CGG 0.601071 3_2:-90971866 None:intergenic
TTGCAAATATGGGACACAGC+CGG 0.602143 3_2:+90971090 Msa0437010:CDS
TGCTAAAACAAATCTGAATG+TGG 0.604329 3_2:+90972502 Msa0437010:CDS
AAGCCAATAAGGCTTAAAGC+AGG 0.605417 3_2:+90973100 Msa0437010:three_prime_UTR
CTTCTCCTAATTGGTGATAG+CGG 0.620219 3_2:+90970727 Msa0437010:CDS
CCAACCAGACCAGGGAGCAG+GGG 0.621818 3_2:+90972822 Msa0437010:CDS
GGTGGGCAACAAAGCTGACA+TGG 0.624736 3_2:+90972203 Msa0437010:CDS
AGATACTGACTCAAAATCTG+AGG 0.634590 3_2:+90972571 Msa0437010:CDS
ATATACAAGTAAAATACCCA+TGG 0.634609 3_2:-90971874 None:intergenic
TAAAACAAATCTGAATGTGG+AGG 0.641771 3_2:+90972505 Msa0437010:CDS
ACCACAGCAGAAATAAACAT+AGG 0.642974 3_2:-90973306 None:intergenic
ACCATAAGCCAAGTATGGTG+TGG 0.653928 3_2:-90973125 None:intergenic
CAAACTCAAGAATGAATGTG+TGG 0.658578 3_2:-90973230 None:intergenic
CTTGGCTTATGGTCACGGTG+TGG 0.658669 3_2:+90973135 Msa0437010:three_prime_UTR
AAGATTAACCAACCAGACCA+GGG 0.666777 3_2:+90972814 Msa0437010:CDS
GTGGATGTCTGGCATCAATG+TGG 0.721252 3_2:-90973211 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATATCATATTAATTAAAA+CGG - chr3_2:90973417-90973436 None:intergenic 10.0%
!! TAATATTACAATAACAACAA+AGG - chr3_2:90971727-90971746 None:intergenic 15.0%
!! ATTTACATATACAAAATCAT+AGG - chr3_2:90971800-90971819 None:intergenic 15.0%
!! AAAGATGCAATTATAAAAAA+GGG - chr3_2:90972657-90972676 None:intergenic 15.0%
!!! TTTTTCTCTTCATTAATGAT+CGG + chr3_2:90970620-90970639 Msa0437010:intron 20.0%
!! CCAAACATAGAAAATAAAAA+TGG - chr3_2:90970755-90970774 None:intergenic 20.0%
!!! CCATTTTTATTTTCTATGTT+TGG + chr3_2:90970752-90970771 Msa0437010:intron 20.0%
!!! TTATTTTCTATGTTTGGTAA+TGG + chr3_2:90970758-90970777 Msa0437010:intron 20.0%
!!! GATTATGCTATTTTTCATAT+TGG + chr3_2:90970855-90970874 Msa0437010:intron 20.0%
!! GAATTTAAGGATAATAAAAG+AGG - chr3_2:90971970-90971989 None:intergenic 20.0%
!! TACGAAGATATTACAATTTA+AGG - chr3_2:90971999-90972018 None:intergenic 20.0%
!!! TTTTATGTACTTATATGCAT+TGG + chr3_2:90972279-90972298 Msa0437010:intron 20.0%
!! TTTATGTACTTATATGCATT+GGG + chr3_2:90972280-90972299 Msa0437010:intron 20.0%
!! AATCAATGATAACTAGTAAA+AGG - chr3_2:90972609-90972628 None:intergenic 20.0%
!! GGTTAAAAAAAAAAAAAGTC+GGG - chr3_2:90972636-90972655 None:intergenic 20.0%
!! GGGTTAAAAAAAAAAAAAGT+CGG - chr3_2:90972637-90972656 None:intergenic 20.0%
!! GAAAGATGCAATTATAAAAA+AGG - chr3_2:90972658-90972677 None:intergenic 20.0%
!!! TTTTATAATTGCATCTTTCA+CGG + chr3_2:90972659-90972678 Msa0437010:intron 20.0%
!! ATAATTAATTTCCCAACATA+GGG - chr3_2:90973012-90973031 None:intergenic 20.0%
!!! AACTCTTAATTTTGTCATTT+TGG - chr3_2:90973282-90973301 None:intergenic 20.0%
! AGAATGAAAAGAAGAATCAA+AGG + chr3_2:90970358-90970377 Msa0437010:five_prime_UTR 25.0%
! GAATGAAAAGAAGAATCAAA+GGG + chr3_2:90970359-90970378 Msa0437010:five_prime_UTR 25.0%
! TCAATAAATGAAGAGAAAAG+TGG - chr3_2:90970549-90970568 None:intergenic 25.0%
! TTGTGCAATCATGTAATATT+TGG + chr3_2:90970965-90970984 Msa0437010:intron 25.0%
! GACATCACAAAAGAATAAAA+CGG - chr3_2:90970993-90971012 None:intergenic 25.0%
!!! TCAGCATTGATTTCAAAATA+AGG + chr3_2:90971037-90971056 Msa0437010:intron 25.0%
! AACATAGTGTAAAACATTAC+AGG - chr3_2:90971190-90971209 None:intergenic 25.0%
!! GTAATGTTTTACACTATGTT+TGG + chr3_2:90971190-90971209 Msa0437010:intron 25.0%
! TATTAGAGAAACTTCTTTCA+TGG + chr3_2:90971620-90971639 Msa0437010:intron 25.0%
! ATATACAAGTAAAATACCCA+TGG - chr3_2:90971877-90971896 None:intergenic 25.0%
! TTTACTTGTATATGACGTTA+CGG + chr3_2:90971884-90971903 Msa0437010:CDS 25.0%
! TAAGGATAATAAAAGAGGAA+TGG - chr3_2:90971965-90971984 None:intergenic 25.0%
! TTTAAGGAAACACGAATTTA+AGG - chr3_2:90971983-90972002 None:intergenic 25.0%
! TAATTGTGTTCACTGTATAA+TGG - chr3_2:90972028-90972047 None:intergenic 25.0%
! TGACAATGTTAACAAGATAT+TGG + chr3_2:90972182-90972201 Msa0437010:CDS 25.0%
! AATGTTAACAAGATATTGGT+GGG + chr3_2:90972186-90972205 Msa0437010:CDS 25.0%
!!! CAAAATCTGAGGTTTTATTT+TGG + chr3_2:90972582-90972601 Msa0437010:intron 25.0%
!! GAGTGATTTTTGTTAAACTT+AGG - chr3_2:90972725-90972744 None:intergenic 25.0%
! CATAATTAATTTCCCAACAT+AGG - chr3_2:90973013-90973032 None:intergenic 25.0%
!! AAACTGAGAAATAACTTTTG+TGG + chr3_2:90973345-90973364 Msa0437010:three_prime_UTR 25.0%
AGAGAAAAGGAAAGAAAAGA+GGG - chr3_2:90970468-90970487 None:intergenic 30.0%
AGGAAAGTTAAGATCTAAAC+AGG - chr3_2:90970503-90970522 None:intergenic 30.0%
!!! ATAGGTTTTGTTTGTTTCGA+TGG + chr3_2:90970657-90970676 Msa0437010:exon 30.0%
CTCATTAAACTTCTCCTAAT+TGG + chr3_2:90970718-90970737 Msa0437010:CDS 30.0%
!! GTTTGATTTTGTGAAAGCTA+CGG - chr3_2:90970813-90970832 None:intergenic 30.0%
CAAACAAGTACTTAGTACTT+TGG + chr3_2:90970828-90970847 Msa0437010:intron 30.0%
!!! ATGCTATTTTTCATATTGGC+AGG + chr3_2:90970859-90970878 Msa0437010:intron 30.0%
! TTTTATTGCGTTTCTCTGAT+GGG + chr3_2:90970899-90970918 Msa0437010:CDS 30.0%
!!! ACTAGTTTTATCACAACCAT+TGG + chr3_2:90970931-90970950 Msa0437010:CDS 30.0%
!!! CTAGTTTTATCACAACCATT+GGG + chr3_2:90970932-90970951 Msa0437010:CDS 30.0%
AGCGAATCAAATTGCAAATA+TGG + chr3_2:90971079-90971098 Msa0437010:CDS 30.0%
GCGAATCAAATTGCAAATAT+GGG + chr3_2:90971080-90971099 Msa0437010:CDS 30.0%
!! TTCTAGCTTCACAAAAATCA+TGG - chr3_2:90971259-90971278 None:intergenic 30.0%
! ATTTTTGTGAAGCTAGAAGT+TGG + chr3_2:90971261-90971280 Msa0437010:intron 30.0%
! ACACAAATTCGTCCATTTTA+TGG + chr3_2:90971297-90971316 Msa0437010:intron 30.0%
! CACAAATTCGTCCATTTTAT+GGG + chr3_2:90971298-90971317 Msa0437010:intron 30.0%
TGTTTAACGTAAGAGAGAAT+GGG - chr3_2:90971942-90971961 None:intergenic 30.0%
CAATGTTAACAAGATATTGG+TGG + chr3_2:90972185-90972204 Msa0437010:CDS 30.0%
TCATTCTCATTCATACTTGT+TGG + chr3_2:90972252-90972271 Msa0437010:intron 30.0%
TGCTAAAACAAATCTGAATG+TGG + chr3_2:90972502-90972521 Msa0437010:CDS 30.0%
TAAAACAAATCTGAATGTGG+AGG + chr3_2:90972505-90972524 Msa0437010:CDS 30.0%
! AGGTTTTCTTTTCAATAGCT+CGG + chr3_2:90972528-90972547 Msa0437010:CDS 30.0%
TTTGTTAAACTTAGGATGCA+AGG - chr3_2:90972717-90972736 None:intergenic 30.0%
GTTTAACAAAAATCACTCTC+CGG + chr3_2:90972727-90972746 Msa0437010:intron 30.0%
TTTAACAAAAATCACTCTCC+GGG + chr3_2:90972728-90972747 Msa0437010:intron 30.0%
ACAAAATGGAAAACTTAGCA+TGG - chr3_2:90972773-90972792 None:intergenic 30.0%
TTGGTTAATCTTGATTGTCT+GGG - chr3_2:90972806-90972825 None:intergenic 30.0%
! TTTTACAGTTGCTACTCATT+GGG + chr3_2:90972969-90972988 Msa0437010:three_prime_UTR 30.0%
TCACTCAGATTCAGTTATTT+GGG - chr3_2:90973178-90973197 None:intergenic 30.0%
! AGAAATAACTTTTGTGGTCA+AGG + chr3_2:90973351-90973370 Msa0437010:three_prime_UTR 30.0%
GAGAGAAAAGGAAAGAAAAG+AGG - chr3_2:90970469-90970488 None:intergenic 35.0%
GAAAACGAGAAAGAGAGAAA+AGG - chr3_2:90970481-90970500 None:intergenic 35.0%
! TTTTTCATATTGGCAGGTGT+TGG + chr3_2:90970865-90970884 Msa0437010:intron 35.0%
! CTTTTATTGCGTTTCTCTGA+TGG + chr3_2:90970898-90970917 Msa0437010:CDS 35.0%
! TTTTATCACAACCATTGGGT+AGG + chr3_2:90970936-90970955 Msa0437010:intron 35.0%
ATAAGGACAATTGAGCTTGA+TGG + chr3_2:90971054-90971073 Msa0437010:CDS 35.0%
ATCCAAACAAGCCCATAAAA+TGG - chr3_2:90971312-90971331 None:intergenic 35.0%
CGCTTATATAAGCTTGCATA+AGG + chr3_2:90971375-90971394 Msa0437010:intron 35.0%
! TGGTTTGAGTTTCCATTTAG+CGG + chr3_2:90971640-90971659 Msa0437010:intron 35.0%
! ATGTAACTGATTCCACCTAA+TGG + chr3_2:90971695-90971714 Msa0437010:intron 35.0%
GTTTAACGTAAGAGAGAATG+GGG - chr3_2:90971941-90971960 None:intergenic 35.0%
GTGTTTAACGTAAGAGAGAA+TGG - chr3_2:90971943-90971962 None:intergenic 35.0%
!! AAGCATTGAAAGCCAATTGT+CGG - chr3_2:90972065-90972084 None:intergenic 35.0%
AAGCGCTATTACATGACAAT+AGG + chr3_2:90972097-90972116 Msa0437010:intron 35.0%
AGTATGAATGAGAATGAGAG+AGG - chr3_2:90972249-90972268 None:intergenic 35.0%
TATCCATCAATGTTCCCTTT+AGG + chr3_2:90972327-90972346 Msa0437010:intron 35.0%
!!! TTTGTTTTAGCACTCTGTAC+AGG - chr3_2:90972494-90972513 None:intergenic 35.0%
! GGTTTTCTTTTCAATAGCTC+GGG + chr3_2:90972529-90972548 Msa0437010:CDS 35.0%
!! AGATACTGACTCAAAATCTG+AGG + chr3_2:90972571-90972590 Msa0437010:CDS 35.0%
TGGTTAATCTTGATTGTCTG+GGG - chr3_2:90972805-90972824 None:intergenic 35.0%
GTTGGTTAATCTTGATTGTC+TGG - chr3_2:90972807-90972826 None:intergenic 35.0%
! ACCACAACATGCAGATTTTT+GGG - chr3_2:90972860-90972879 None:intergenic 35.0%
! AACCACAACATGCAGATTTT+TGG - chr3_2:90972861-90972880 None:intergenic 35.0%
TGCATGTTGTGGTTCTTAAT+GGG + chr3_2:90972867-90972886 Msa0437010:exon 35.0%
! GTTTTACAGTTGCTACTCAT+TGG + chr3_2:90972968-90972987 Msa0437010:three_prime_UTR 35.0%
! ATGGTAGATTTTCCCTATGT+TGG + chr3_2:90972997-90973016 Msa0437010:three_prime_UTR 35.0%
! TGGTAGATTTTCCCTATGTT+GGG + chr3_2:90972998-90973017 Msa0437010:three_prime_UTR 35.0%
!! CTTAAACCCACTCTTTTTCA+GGG + chr3_2:90973048-90973067 Msa0437010:three_prime_UTR 35.0%
!!! TTAAACCCACTCTTTTTCAG+GGG + chr3_2:90973049-90973068 Msa0437010:three_prime_UTR 35.0%
TTCCTTTCTTGAAGCCAATA+AGG + chr3_2:90973089-90973108 Msa0437010:three_prime_UTR 35.0%
GTCACTCAGATTCAGTTATT+TGG - chr3_2:90973179-90973198 None:intergenic 35.0%
CAAACTCAAGAATGAATGTG+TGG - chr3_2:90973233-90973252 None:intergenic 35.0%
CACACATTCATTCTTGAGTT+TGG + chr3_2:90973231-90973250 Msa0437010:three_prime_UTR 35.0%
! TCTTGAGTTTGGAGTTTCAA+AGG + chr3_2:90973242-90973261 Msa0437010:three_prime_UTR 35.0%
ACCACAGCAGAAATAAACAT+AGG - chr3_2:90973309-90973328 None:intergenic 35.0%
TGGTCAAGGAACTTATGATA+TGG + chr3_2:90973365-90973384 Msa0437010:three_prime_UTR 35.0%
! GGAACATTTTCTGCATGTTT+AGG - chr3_2:90973396-90973415 None:intergenic 35.0%
!! ACTAGTTGAGCGTTGAATTG+GGG - chr3_2:90970420-90970439 None:intergenic 40.0%
!! CACTAGTTGAGCGTTGAATT+GGG - chr3_2:90970421-90970440 None:intergenic 40.0%
!! TCACTAGTTGAGCGTTGAAT+TGG - chr3_2:90970422-90970441 None:intergenic 40.0%
TGGAAATACCTGTGAAGATG+AGG - chr3_2:90970529-90970548 None:intergenic 40.0%
! CTTCTCCTAATTGGTGATAG+CGG + chr3_2:90970727-90970746 Msa0437010:CDS 40.0%
!! GTTTGGTAATGGTATCACTC+TGG + chr3_2:90970769-90970788 Msa0437010:intron 40.0%
TTTGTGAAAGCTACGGAGTA+TGG - chr3_2:90970806-90970825 None:intergenic 40.0%
CACAAAAGAAACCTACCCAA+TGG - chr3_2:90970950-90970969 None:intergenic 40.0%
CGATTTCGAACTATCACAAC+TGG + chr3_2:90971120-90971139 Msa0437010:CDS 40.0%
GAACATTAGGACGTGAGAAA+TGG - chr3_2:90971231-90971250 None:intergenic 40.0%
AATCATGGCCAGAGAACATT+AGG - chr3_2:90971244-90971263 None:intergenic 40.0%
!! GTCCATTTTATGGGCTTGTT+TGG + chr3_2:90971307-90971326 Msa0437010:intron 40.0%
GTCTAGTCACATGCTTAAAG+TGG - chr3_2:90971544-90971563 None:intergenic 40.0%
! GGTTTGAGTTTCCATTTAGC+GGG + chr3_2:90971641-90971660 Msa0437010:intron 40.0%
! GTTTGAGTTTCCATTTAGCG+GGG + chr3_2:90971642-90971661 Msa0437010:intron 40.0%
! TTTGAGTTTCCATTTAGCGG+GGG + chr3_2:90971643-90971662 Msa0437010:intron 40.0%
CTGATTCCACCTAATGGAAA+AGG + chr3_2:90971701-90971720 Msa0437010:intron 40.0%
! CAACAAAGGCCTTTTCCATT+AGG - chr3_2:90971713-90971732 None:intergenic 40.0%
TAACAGTTCAACCCGACAAT+TGG + chr3_2:90972050-90972069 Msa0437010:intron 40.0%
! AGCATTGAAAGCCAATTGTC+GGG - chr3_2:90972064-90972083 None:intergenic 40.0%
TCATCTCATGTCCAGATATC+AGG + chr3_2:90972127-90972146 Msa0437010:intron 40.0%
CATGTCCAGATATCAGGAAT+TGG + chr3_2:90972133-90972152 Msa0437010:intron 40.0%
CGAATCCAATTCCTGATATC+TGG - chr3_2:90972141-90972160 None:intergenic 40.0%
CTGACATGGATGAAAGCAAA+CGG + chr3_2:90972217-90972236 Msa0437010:CDS 40.0%
TGACATGGATGAAAGCAAAC+GGG + chr3_2:90972218-90972237 Msa0437010:CDS 40.0%
AACAAATCTGAATGTGGAGG+AGG + chr3_2:90972508-90972527 Msa0437010:CDS 40.0%
ACTGATGAGAGAATTCAACC+CGG - chr3_2:90972749-90972768 None:intergenic 40.0%
AAGATTAACCAACCAGACCA+GGG + chr3_2:90972814-90972833 Msa0437010:CDS 40.0%
!! ACAACATGCAGATTTTTGGG+CGG - chr3_2:90972857-90972876 None:intergenic 40.0%
CTGCATGTTGTGGTTCTTAA+TGG + chr3_2:90972866-90972885 Msa0437010:CDS 40.0%
GTTCTTAATGGGAAGCTTGA+GGG + chr3_2:90972878-90972897 Msa0437010:exon 40.0%
! GCTTAAACCCACTCTTTTTC+AGG + chr3_2:90973047-90973066 Msa0437010:three_prime_UTR 40.0%
!! AGCCTTATTGGCTTCAAGAA+AGG - chr3_2:90973094-90973113 None:intergenic 40.0%
AAGCCAATAAGGCTTAAAGC+AGG + chr3_2:90973100-90973119 Msa0437010:three_prime_UTR 40.0%
! GTTCCTGCTTTAAGCCTTAT+TGG - chr3_2:90973106-90973125 None:intergenic 40.0%
CACGGTGTGGTTAACATTTA+TGG + chr3_2:90973148-90973167 Msa0437010:three_prime_UTR 40.0%
AGAATGAATGTGTGGATGTC+TGG - chr3_2:90973225-90973244 None:intergenic 40.0%
!! GCCTATGTTTATTTCTGCTG+TGG + chr3_2:90973305-90973324 Msa0437010:three_prime_UTR 40.0%
TTCCTCTTCCTCATCTTCAC+AGG + chr3_2:90970518-90970537 Msa0437010:five_prime_UTR 45.0%
TACCTGTGAAGATGAGGAAG+AGG - chr3_2:90970523-90970542 None:intergenic 45.0%
TGGTACCGCTATCACCAATT+AGG - chr3_2:90970735-90970754 None:intergenic 45.0%
TTGCAAATATGGGACACAGC+CGG + chr3_2:90971090-90971109 Msa0437010:CDS 45.0%
AGTTCGAAATCGCTCTTGAC+CGG - chr3_2:90971112-90971131 None:intergenic 45.0%
TCTCACGTCCTAATGTTCTC+TGG + chr3_2:90971233-90971252 Msa0437010:intron 45.0%
TTGAGTTTCCATTTAGCGGG+GGG + chr3_2:90971644-90971663 Msa0437010:intron 45.0%
! CAAAGGCCTTTTCCATTAGG+TGG - chr3_2:90971710-90971729 None:intergenic 45.0%
CGGTAGTAAGCTGCAAAAGA+AGG - chr3_2:90971849-90971868 None:intergenic 45.0%
! TCTTTTGCAGCTTACTACCG+TGG + chr3_2:90971849-90971868 Msa0437010:intron 45.0%
GTAAAATACCCATGGCTCCA+CGG - chr3_2:90971869-90971888 None:intergenic 45.0%
CAGCCTAAAGGGAACATTGA+TGG - chr3_2:90972333-90972352 None:intergenic 45.0%
AGAAGTTGGCACAGCCTAAA+GGG - chr3_2:90972344-90972363 None:intergenic 45.0%
TAGAAGTTGGCACAGCCTAA+AGG - chr3_2:90972345-90972364 None:intergenic 45.0%
TTAGGCTGTGCCAACTTCTA+AGG + chr3_2:90972345-90972364 Msa0437010:intron 45.0%
TAGGCTGTGCCAACTTCTAA+GGG + chr3_2:90972346-90972365 Msa0437010:intron 45.0%
CATATTCATCTGCAAGCGCT+TGG - chr3_2:90972372-90972391 None:intergenic 45.0%
CAAGCGCTTGCAGATGAATA+TGG + chr3_2:90972370-90972389 Msa0437010:CDS 45.0%
TGGGGCTGCAAAGAACAAAA+TGG - chr3_2:90972787-90972806 None:intergenic 45.0%
CAAGATTAACCAACCAGACC+AGG + chr3_2:90972813-90972832 Msa0437010:CDS 45.0%
GCCCAAAAATCTGCATGTTG+TGG + chr3_2:90972856-90972875 Msa0437010:CDS 45.0%
GGTTCTTAATGGGAAGCTTG+AGG + chr3_2:90972877-90972896 Msa0437010:exon 45.0%
ACAGTTGCTACTCATTGGGT+TGG + chr3_2:90972973-90972992 Msa0437010:three_prime_UTR 45.0%
!! TGCTACTCATTGGGTTGGAA+TGG + chr3_2:90972978-90972997 Msa0437010:three_prime_UTR 45.0%
ACCACACCATACTTGGCTTA+TGG + chr3_2:90973124-90973143 Msa0437010:three_prime_UTR 45.0%
ACCATAAGCCAAGTATGGTG+TGG - chr3_2:90973128-90973147 None:intergenic 45.0%
CCATACTTGGCTTATGGTCA+CGG + chr3_2:90973130-90973149 Msa0437010:three_prime_UTR 45.0%
! AGTTTGGAGTTTCAAAGGCG+TGG + chr3_2:90973247-90973266 Msa0437010:three_prime_UTR 45.0%
!! TATCTAATAATAATAATAAT+TGG - chr3_2:90970587-90970606 None:intergenic 5.0%
TAATGATCGGACACTCGCAG+AGG + chr3_2:90970633-90970652 Msa0437010:intron 50.0%
ATCGTAATCAGCACGAGCTC+TGG - chr3_2:90970695-90970714 None:intergenic 50.0%
CCAAGCCCCTGAAAAAGAGT+GGG - chr3_2:90973057-90973076 None:intergenic 50.0%
ACCAAGCCCCTGAAAAAGAG+TGG - chr3_2:90973058-90973077 None:intergenic 50.0%
AGCAGGAACCACACCATACT+TGG + chr3_2:90973117-90973136 Msa0437010:three_prime_UTR 50.0%
CCGTGACCATAAGCCAAGTA+TGG - chr3_2:90973133-90973152 None:intergenic 50.0%
GTGGATGTCTGGCATCAATG+TGG - chr3_2:90973214-90973233 None:intergenic 50.0%
TCGGACACTCGCAGAGGAAT+AGG + chr3_2:90970639-90970658 Msa0437010:intron 55.0%
! TAATCAGCACGAGCTCTGGC+AGG - chr3_2:90970691-90970710 None:intergenic 55.0%
ATGTCTTGCCCCCCGCTAAA+TGG - chr3_2:90971655-90971674 None:intergenic 55.0%
AGCTTACTACCGTGGAGCCA+TGG + chr3_2:90971857-90971876 Msa0437010:intron 55.0%
GCTTACTACCGTGGAGCCAT+GGG + chr3_2:90971858-90971877 Msa0437010:intron 55.0%
GGTGGGCAACAAAGCTGACA+TGG + chr3_2:90972203-90972222 Msa0437010:CDS 55.0%
AGCGCTTGGCCCTTAGAAGT+TGG - chr3_2:90972358-90972377 None:intergenic 55.0%
!! TGCAGATTTTTGGGCGGCCT+GGG - chr3_2:90972851-90972870 None:intergenic 55.0%
!! ATGCAGATTTTTGGGCGGCC+TGG - chr3_2:90972852-90972871 None:intergenic 55.0%
!!! CCCACTCTTTTTCAGGGGCT+TGG + chr3_2:90973054-90973073 Msa0437010:three_prime_UTR 55.0%
CTTGGCTTATGGTCACGGTG+TGG + chr3_2:90973135-90973154 Msa0437010:three_prime_UTR 55.0%
AACCAACCAGACCAGGGAGC+AGG + chr3_2:90972820-90972839 Msa0437010:CDS 60.0%
ACCAACCAGACCAGGGAGCA+GGG + chr3_2:90972821-90972840 Msa0437010:CDS 60.0%
! TCAGCACGAGCTCTGGCAGG+TGG - chr3_2:90970688-90970707 None:intergenic 65.0%
CCAACCAGACCAGGGAGCAG+GGG + chr3_2:90972822-90972841 Msa0437010:CDS 65.0%
CCCCTGCTCCCTGGTCTGGT+TGG - chr3_2:90972825-90972844 None:intergenic 70.0%
GCAGCCCCTGCTCCCTGGTC+TGG - chr3_2:90972829-90972848 None:intergenic 75.0%
! CCTGGGCAGCCCCTGCTCCC+TGG - chr3_2:90972834-90972853 None:intergenic 80.0%
! CCAGGGAGCAGGGGCTGCCC+AGG + chr3_2:90972831-90972850 Msa0437010:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 90970352 90973451 90970352 ID=Msa0437010;Name=Msa0437010
chr3_2 mRNA 90970352 90973451 90970352 ID=Msa0437010-mRNA-1;Parent=Msa0437010;Name=Msa0437010-mRNA-1;_AED=0.13;_eAED=0.13;_QI=211|1|1|1|0.87|0.77|9|566|216
chr3_2 exon 90970352 90970539 90970352 ID=Msa0437010-mRNA-1:exon:27136;Parent=Msa0437010-mRNA-1
chr3_2 exon 90970653 90970748 90970653 ID=Msa0437010-mRNA-1:exon:27137;Parent=Msa0437010-mRNA-1
chr3_2 exon 90970881 90970953 90970881 ID=Msa0437010-mRNA-1:exon:27138;Parent=Msa0437010-mRNA-1
chr3_2 exon 90971041 90971141 90971041 ID=Msa0437010-mRNA-1:exon:27139;Parent=Msa0437010-mRNA-1
chr3_2 exon 90971859 90971924 90971859 ID=Msa0437010-mRNA-1:exon:27140;Parent=Msa0437010-mRNA-1
chr3_2 exon 90972142 90972239 90972142 ID=Msa0437010-mRNA-1:exon:27141;Parent=Msa0437010-mRNA-1
chr3_2 exon 90972349 90972411 90972349 ID=Msa0437010-mRNA-1:exon:27142;Parent=Msa0437010-mRNA-1
chr3_2 exon 90972500 90972592 90972500 ID=Msa0437010-mRNA-1:exon:27143;Parent=Msa0437010-mRNA-1
chr3_2 exon 90972802 90973451 90972802 ID=Msa0437010-mRNA-1:exon:27144;Parent=Msa0437010-mRNA-1
chr3_2 five_prime_UTR 90970352 90970539 90970352 ID=Msa0437010-mRNA-1:five_prime_utr;Parent=Msa0437010-mRNA-1
chr3_2 five_prime_UTR 90970653 90970675 90970653 ID=Msa0437010-mRNA-1:five_prime_utr;Parent=Msa0437010-mRNA-1
chr3_2 CDS 90970676 90970748 90970676 ID=Msa0437010-mRNA-1:cds;Parent=Msa0437010-mRNA-1
chr3_2 CDS 90970881 90970953 90970881 ID=Msa0437010-mRNA-1:cds;Parent=Msa0437010-mRNA-1
chr3_2 CDS 90971041 90971141 90971041 ID=Msa0437010-mRNA-1:cds;Parent=Msa0437010-mRNA-1
chr3_2 CDS 90971859 90971924 90971859 ID=Msa0437010-mRNA-1:cds;Parent=Msa0437010-mRNA-1
chr3_2 CDS 90972142 90972239 90972142 ID=Msa0437010-mRNA-1:cds;Parent=Msa0437010-mRNA-1
chr3_2 CDS 90972349 90972411 90972349 ID=Msa0437010-mRNA-1:cds;Parent=Msa0437010-mRNA-1
chr3_2 CDS 90972500 90972592 90972500 ID=Msa0437010-mRNA-1:cds;Parent=Msa0437010-mRNA-1
chr3_2 CDS 90972802 90972885 90972802 ID=Msa0437010-mRNA-1:cds;Parent=Msa0437010-mRNA-1
chr3_2 three_prime_UTR 90972886 90973451 90972886 ID=Msa0437010-mRNA-1:three_prime_utr;Parent=Msa0437010-mRNA-1
Gene Sequence

>Msa0437010

ATGGCTGCTCCACCTGCCAGAGCTCGTGCTGATTACGATTATCTCATTAAACTTCTCCTAATTGGTGATAGCGGTGTTGGTAAAAGTTGTCTTTTATTGCGTTTCTCTGATGGGTCTTTTACAACTAGTTTTATCACAACCATTGGCATTGATTTCAAAATAAGGACAATTGAGCTTGATGGAAAGCGAATCAAATTGCAAATATGGGACACAGCCGGTCAAGAGCGATTTCGAACTATCACAACTGCTTACTACCGTGGAGCCATGGGTATTTTACTTGTATATGACGTTACGGACGAGTCTTCTTTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCTGACAATGTTAACAAGATATTGGTGGGCAACAAAGCTGACATGGATGAAAGCAAACGGGCTGTGCCAACTTCTAAGGGCCAAGCGCTTGCAGATGAATATGGTATCAAGTTTTTTGAGACTAGTGCTAAAACAAATCTGAATGTGGAGGAGGTTTTCTTTTCAATAGCTCGGGACATCAAGCAAAGACTTGCAGATACTGACTCAAAATCTGAGCCCCAGACAATCAAGATTAACCAACCAGACCAGGGAGCAGGGGCTGCCCAGGCCGCCCAAAAATCTGCATGTTGTGGTTCTTAA
Protein sequence

>Msa0437010

MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS*