AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123780 MtrunA17_Chr7g0263071 100.000 216 0 0 1 216 1 216 7.42e-162 445
Msa1123780 MtrunA17_Chr1g0182321 94.907 216 11 0 1 216 1 216 7.40e-157 432
Msa1123780 MtrunA17_Chr1g0182301 94.444 216 12 0 1 216 1 216 4.68e-156 431
Msa1123780 MtrunA17_Chr1g0212521 94.634 205 11 0 11 215 11 215 8.55e-145 402
Msa1123780 MtrunA17_Chr4g0030911 95.122 205 9 1 11 215 11 214 7.16e-144 399
Msa1123780 MtrunA17_Chr2g0327911 77.315 216 45 3 1 215 1 213 2.60e-117 332
Msa1123780 MtrunA17_Chr7g0250531 61.058 208 70 4 11 216 4 202 2.87e-87 256
Msa1123780 MtrunA17_Chr4g0055651 59.135 208 74 4 11 216 4 202 4.67e-86 253
Msa1123780 MtrunA17_Chr8g0335471 59.809 209 72 4 11 216 4 203 1.63e-84 249
Msa1123780 MtrunA17_Chr2g0276931 55.288 208 81 4 11 215 5 203 8.75e-80 237
Msa1123780 MtrunA17_Chr6g0458081 47.368 209 103 4 12 214 3 210 1.16e-60 189
Msa1123780 MtrunA17_Chr2g0290891 46.890 209 103 3 12 213 3 210 8.42e-60 186
Msa1123780 MtrunA17_Chr3g0112681 45.327 214 104 4 11 216 8 216 1.47e-59 186
Msa1123780 MtrunA17_Chr4g0032201 42.991 214 116 3 7 216 4 215 3.37e-59 185
Msa1123780 MtrunA17_Chr2g0283131 44.495 218 108 3 7 216 5 217 1.28e-57 181
Msa1123780 MtrunA17_Chr4g0046261 44.954 218 107 5 7 216 5 217 3.93e-57 180
Msa1123780 MtrunA17_Chr2g0276941 43.128 211 114 2 11 216 11 220 4.31e-57 180
Msa1123780 MtrunA17_Chr4g0040781 45.413 218 106 5 7 216 5 217 1.33e-56 179
Msa1123780 MtrunA17_Chr1g0189361 42.991 214 107 4 13 214 12 222 8.04e-56 177
Msa1123780 MtrunA17_Chr2g0315551 43.721 215 114 3 7 216 5 217 1.50e-55 176
Msa1123780 MtrunA17_Chr1g0180291 48.309 207 96 7 12 214 11 210 1.01e-54 174
Msa1123780 MtrunA17_Chr3g0123821 42.453 212 108 4 13 214 14 221 1.82e-54 173
Msa1123780 MtrunA17_Chr7g0265001 45.673 208 101 5 12 214 13 213 2.24e-54 173
Msa1123780 MtrunA17_Chr8g0349711 47.312 186 91 3 14 195 5 187 2.59e-54 172
Msa1123780 MtrunA17_Chr8g0381841 43.396 212 111 4 13 216 15 225 4.00e-54 172
Msa1123780 MtrunA17_Chr3g0130271 44.712 208 104 5 11 214 8 208 1.89e-53 170
Msa1123780 MtrunA17_Chr8g0384311 44.393 214 105 7 6 214 4 208 3.78e-53 169
Msa1123780 MtrunA17_Chr8g0349681 42.995 207 115 2 9 213 378 583 5.28e-53 179
Msa1123780 MtrunA17_Chr8g0349681 45.763 177 91 2 12 184 172 347 4.92e-48 166
Msa1123780 MtrunA17_Chr8g0349681 49.045 157 79 1 14 170 12 167 5.17e-46 160
Msa1123780 MtrunA17_Chr2g0319951 49.123 171 86 1 7 177 5 174 5.46e-53 169
Msa1123780 MtrunA17_Chr1g0159481 45.411 207 103 6 11 213 13 213 1.59e-52 168
Msa1123780 MtrunA17_Chr1g0174281 41.589 214 111 4 13 215 13 223 1.85e-52 168
Msa1123780 MtrunA17_Chr2g0325091 42.991 214 108 4 11 216 7 214 1.90e-52 168
Msa1123780 MtrunA17_Chr1g0197331 42.857 217 115 6 1 214 1 211 7.26e-52 166
Msa1123780 MtrunA17_Chr7g0234201 41.951 205 113 3 14 214 12 214 7.28e-52 166
Msa1123780 MtrunA17_Chr8g0346421 46.667 165 87 1 13 177 24 187 7.12e-51 164
Msa1123780 MtrunA17_Chr8g0351861 42.647 204 113 2 13 213 14 216 1.41e-50 164
Msa1123780 MtrunA17_Chr6g0482721 41.262 206 116 2 13 214 10 214 5.69e-50 162
Msa1123780 MtrunA17_Chr7g0275991 40.099 202 115 2 7 203 12 212 1.30e-49 161
Msa1123780 MtrunA17_Chr7g0214241 39.130 207 119 4 14 214 14 219 3.22e-49 160
Msa1123780 MtrunA17_Chr8g0392931 44.076 211 104 4 13 214 12 217 1.73e-47 155
Msa1123780 MtrunA17_Chr7g0231131 45.455 165 89 1 13 177 13 176 1.92e-47 155
Msa1123780 MtrunA17_Chr3g0109721 38.191 199 111 4 17 214 12 199 1.12e-44 147
Msa1123780 MtrunA17_Chr1g0199331 44.242 165 90 2 16 179 32 195 1.18e-44 147
Msa1123780 MtrunA17_Chr8g0390561 39.698 199 109 4 17 215 11 198 1.30e-44 147
Msa1123780 MtrunA17_Chr5g0433561 36.869 198 115 3 17 214 12 199 9.44e-44 145
Msa1123780 MtrunA17_Chr8g0382221 38.191 199 110 3 17 205 11 206 9.92e-42 140
Msa1123780 MtrunA17_Chr4g0034871 39.901 203 108 7 5 198 2 199 7.12e-41 138
Msa1123780 MtrunA17_Chr5g0400131 36.364 209 127 3 5 213 3 205 1.08e-39 135
Msa1123780 MtrunA17_Chr3g0123971 42.405 158 90 1 17 174 11 167 3.35e-39 134
Msa1123780 MtrunA17_Chr4g0055081 40.000 170 97 2 5 174 3 167 1.36e-38 132
Msa1123780 MtrunA17_Chr2g0331691 37.379 206 115 6 15 214 10 207 7.70e-37 128
Msa1123780 MtrunA17_Chr6g0466301 40.120 167 94 3 15 175 8 174 2.97e-36 126
Msa1123780 MtrunA17_Chr6g0465491 40.120 167 94 3 15 175 8 174 2.97e-36 126
Msa1123780 MtrunA17_Chr8g0383261 37.853 177 104 2 15 185 12 188 6.01e-36 125
Msa1123780 MtrunA17_Chr4g0004661 37.864 206 114 6 15 214 64 261 6.88e-36 127
Msa1123780 MtrunA17_Chr1g0201121 35.176 199 121 3 15 205 8 206 1.53e-35 124
Msa1123780 MtrunA17_Chr6g0466161 34.444 180 112 3 32 205 7 186 8.29e-27 102
Msa1123780 MtrunA17_Chr6g0465471 33.889 180 113 3 32 205 7 186 4.53e-26 100
Msa1123780 MtrunA17_Chr1g0178291 41.358 162 87 3 18 179 431 584 1.34e-25 103
Msa1123780 MtrunA17_Chr2g0325101 32.934 167 99 5 15 170 6 170 1.87e-25 98.2
Msa1123780 MtrunA17_Chr4g0037021 32.979 188 113 6 15 191 6 191 2.74e-25 97.8
Msa1123780 MtrunA17_Chr3g0117931 32.335 167 100 5 15 170 8 172 1.52e-24 96.3
Msa1123780 MtrunA17_Chr3g0138121 30.286 175 117 4 3 177 2 171 2.46e-24 95.9
Msa1123780 MtrunA17_Chr3g0138111 30.286 175 117 4 3 177 2 171 2.98e-24 95.9
Msa1123780 MtrunA17_Chr3g0138101 30.286 175 117 4 3 177 2 171 3.08e-24 95.9
Msa1123780 MtrunA17_Chr8g0371501 32.335 167 100 6 15 170 6 170 3.62e-23 92.4
Msa1123780 MtrunA17_Chr6g0486041 31.138 167 102 5 15 170 6 170 4.78e-23 92.4
Msa1123780 MtrunA17_Chr5g0405791 32.335 167 100 6 15 170 6 170 6.90e-23 91.7
Msa1123780 MtrunA17_Chr4g0046211 34.677 124 78 3 15 137 6 127 2.58e-22 88.6
Msa1123780 MtrunA17_Chr6g0466431 35.789 95 52 1 15 109 8 93 6.20e-17 73.2
Msa1123780 MtrunA17_Chr6g0465611 35.789 95 52 1 15 109 8 93 6.20e-17 73.2
Msa1123780 MtrunA17_Chr5g0443631 25.466 161 111 3 16 170 105 262 9.23e-13 65.9
Msa1123780 MtrunA17_Chr5g0434561 30.488 164 95 6 16 170 20 173 6.59e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123780 AT3G53610.2 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa1123780 AT3G53610.3 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa1123780 AT3G53610.1 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa1123780 AT5G59840.1 95.146 206 10 0 11 216 11 216 6.76e-146 405
Msa1123780 AT3G46060.2 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa1123780 AT3G46060.3 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa1123780 AT3G46060.1 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa1123780 AT5G03520.1 86.916 214 27 1 1 214 1 213 6.44e-131 367
Msa1123780 AT3G09900.1 85.116 215 31 1 1 214 1 215 2.41e-128 361
Msa1123780 AT5G03520.2 86.061 165 22 1 50 214 40 203 8.03e-104 298
Msa1123780 AT1G02130.1 60.287 209 71 4 11 216 4 203 1.94e-88 259
Msa1123780 AT4G17530.1 59.135 208 74 4 11 216 4 202 1.05e-83 247
Msa1123780 AT5G47200.1 58.654 208 75 4 11 216 4 202 5.61e-83 245
Msa1123780 AT3G11730.1 56.938 209 78 4 11 215 4 204 1.03e-80 240
Msa1123780 AT4G17160.1 48.058 206 102 3 12 215 3 205 1.16e-64 199
Msa1123780 AT4G35860.1 48.571 210 101 4 12 215 3 211 2.34e-64 198
Msa1123780 AT4G17170.1 47.143 210 104 4 12 215 3 211 8.76e-62 192
Msa1123780 AT1G09630.1 44.860 214 113 2 7 216 4 216 4.54e-61 190
Msa1123780 AT3G46830.1 43.636 220 108 3 7 216 4 217 9.74e-58 182
Msa1123780 AT3G46830.2 43.636 220 108 3 7 216 4 217 9.74e-58 182
Msa1123780 AT4G18430.1 44.907 216 106 3 7 214 5 215 1.03e-57 182
Msa1123780 AT1G16920.1 45.581 215 105 4 7 214 5 214 2.66e-57 181
Msa1123780 AT1G07410.1 42.056 214 117 3 7 216 4 214 3.69e-57 180
Msa1123780 AT5G59150.1 42.326 215 118 3 7 216 4 217 4.61e-57 180
Msa1123780 AT5G60860.1 44.954 218 107 5 7 216 5 217 2.77e-56 178
Msa1123780 AT4G39990.1 44.340 212 107 4 13 216 15 223 1.17e-55 177
Msa1123780 AT3G15060.1 45.413 218 106 5 7 216 5 217 1.46e-55 176
Msa1123780 AT3G07410.1 42.995 207 112 3 13 214 10 215 1.55e-55 176
Msa1123780 AT5G45750.1 44.340 212 112 3 7 214 5 214 2.10e-55 176
Msa1123780 AT4G18800.1 44.076 211 112 3 7 214 5 212 1.19e-54 174
Msa1123780 AT5G47520.1 43.458 214 107 3 13 216 12 221 1.76e-54 174
Msa1123780 AT2G33870.1 43.379 219 110 4 7 216 5 218 2.07e-54 173
Msa1123780 AT2G43130.1 41.176 204 117 2 13 214 10 212 6.46e-54 172
Msa1123780 AT1G28550.1 43.779 217 112 4 7 216 5 218 1.26e-53 171
Msa1123780 AT1G05810.1 40.191 209 119 3 13 216 10 217 3.52e-53 170
Msa1123780 AT1G06400.1 43.256 215 110 4 7 214 5 214 8.08e-53 169
Msa1123780 AT1G05810.2 40.191 209 119 3 13 216 56 263 1.16e-52 170
Msa1123780 AT1G01200.1 47.337 169 89 0 13 181 26 194 1.22e-52 169
Msa1123780 AT5G47960.1 41.706 211 115 3 13 216 13 222 3.15e-52 168
Msa1123780 AT2G31680.1 47.879 165 85 1 13 177 10 173 3.51e-52 168
Msa1123780 AT5G03530.2 45.024 211 105 6 8 214 6 209 8.02e-52 166
Msa1123780 AT5G03530.1 45.024 211 105 6 8 214 6 209 8.02e-52 166
Msa1123780 AT1G43890.3 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa1123780 AT1G43890.1 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa1123780 AT1G43890.2 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa1123780 AT5G65270.1 40.376 213 117 4 13 216 15 226 1.28e-51 166
Msa1123780 AT1G73640.1 46.114 193 99 2 13 201 11 202 2.58e-51 166
Msa1123780 AT3G12160.1 41.315 213 110 4 13 215 13 220 5.13e-51 165
Msa1123780 AT1G18200.1 50.296 169 83 1 13 181 11 178 2.31e-50 163
Msa1123780 AT3G54840.1 44.382 178 94 3 3 179 24 197 2.41e-47 155
Msa1123780 AT3G54840.2 46.154 169 86 3 3 170 24 188 6.27e-47 153
Msa1123780 AT3G54840.3 45.399 163 87 2 18 179 2 163 2.65e-46 151
Msa1123780 AT4G35860.2 46.667 165 81 4 57 215 2 165 1.73e-44 146
Msa1123780 AT3G09910.5 45.312 192 101 4 8 197 6 195 2.91e-44 147
Msa1123780 AT3G09910.4 45.312 192 101 4 8 197 6 195 2.91e-44 147
Msa1123780 AT4G19640.1 38.191 199 113 4 17 215 12 200 4.47e-43 144
Msa1123780 AT3G09910.3 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa1123780 AT3G09910.1 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa1123780 AT3G09910.2 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa1123780 AT3G18820.1 39.109 202 112 5 5 200 2 198 3.06e-41 139
Msa1123780 AT4G39890.1 43.396 159 88 2 17 174 11 168 6.36e-41 139
Msa1123780 AT5G45130.1 36.683 199 116 5 17 215 12 200 9.86e-41 138
Msa1123780 AT2G22290.1 37.186 199 120 4 17 214 11 205 2.50e-40 137
Msa1123780 AT2G44610.1 36.667 210 127 3 5 214 3 206 5.42e-40 136
Msa1123780 AT5G10260.1 36.364 198 124 2 17 214 11 206 3.52e-39 134
Msa1123780 AT5G45130.2 36.041 197 116 5 19 215 22 208 6.41e-39 133
Msa1123780 AT1G22740.1 38.579 197 113 4 15 205 8 202 3.89e-38 131
Msa1123780 AT5G64990.1 37.374 198 121 3 17 213 9 204 8.97e-38 130
Msa1123780 AT1G52280.1 41.667 168 92 3 15 176 8 175 9.17e-38 130
Msa1123780 AT4G09720.1 38.191 199 114 4 15 205 8 205 1.10e-37 130
Msa1123780 AT5G59150.2 48.760 121 61 1 57 177 3 122 1.32e-37 129
Msa1123780 AT1G49300.2 36.058 208 120 6 5 204 2 204 1.35e-37 130
Msa1123780 AT1G49300.1 36.058 208 120 6 5 204 2 204 1.35e-37 130
Msa1123780 AT3G16100.1 37.864 206 113 4 15 214 8 204 4.87e-37 129
Msa1123780 AT4G09720.4 37.745 204 113 5 15 205 8 210 6.69e-36 125
Msa1123780 AT2G21880.1 36.058 208 111 4 15 205 9 211 1.06e-35 125
Msa1123780 AT5G64990.2 36.098 205 121 4 17 213 9 211 4.11e-35 124
Msa1123780 AT4G09720.3 35.238 210 116 4 15 205 8 216 1.60e-34 122
Msa1123780 AT5G39620.1 38.462 169 92 3 16 175 6 171 9.44e-34 120
Msa1123780 AT4G19640.2 38.843 121 74 0 17 137 12 132 7.21e-30 108
Msa1123780 AT4G19640.3 38.843 121 74 0 17 137 12 132 4.70e-29 107
Msa1123780 AT4G09720.6 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa1123780 AT4G09720.5 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa1123780 AT4G09720.2 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa1123780 AT2G21880.4 35.519 183 96 4 40 205 9 186 1.51e-27 103
Msa1123780 AT2G21880.3 35.519 183 96 4 40 205 9 186 1.51e-27 103
Msa1123780 AT4G35020.1 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa1123780 AT4G35020.2 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa1123780 AT4G35020.3 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa1123780 AT2G21880.2 32.212 208 111 5 15 205 9 203 7.35e-26 99.8
Msa1123780 AT2G44690.1 32.335 167 100 5 15 170 18 182 9.19e-26 99.8
Msa1123780 AT5G20010.1 28.972 214 142 6 3 212 2 209 1.21e-25 99.8
Msa1123780 AT3G48040.1 32.934 167 99 5 15 170 8 172 1.42e-25 99.4
Msa1123780 AT5G45970.1 31.138 167 102 5 15 170 6 170 3.74e-25 97.8
Msa1123780 AT5G62880.1 31.844 179 109 5 15 182 8 184 4.31e-25 98.2
Msa1123780 AT5G55080.1 32.716 162 105 3 16 177 14 171 7.69e-25 97.8
Msa1123780 AT3G51300.1 32.335 167 100 6 15 170 6 170 1.18e-24 96.7
Msa1123780 AT1G20090.1 34.132 167 97 6 15 170 5 169 1.51e-24 96.3
Msa1123780 AT1G75840.1 33.533 167 98 6 15 170 6 170 1.96e-24 95.9
Msa1123780 AT5G55190.1 30.286 175 117 4 3 177 2 171 3.82e-24 95.9
Msa1123780 AT5G20020.1 30.286 175 117 4 3 177 2 171 5.35e-24 95.5
Msa1123780 AT2G17800.2 32.934 167 99 6 15 170 6 170 5.78e-24 94.7
Msa1123780 AT2G17800.1 32.934 167 99 6 15 170 6 170 5.78e-24 94.7
Msa1123780 AT4G28950.1 31.515 165 102 5 15 170 6 168 1.75e-23 94.0
Msa1123780 AT4G35950.1 32.335 167 100 6 15 170 6 170 4.13e-23 92.4
Msa1123780 AT3G48040.2 32.075 159 95 5 15 162 8 164 5.88e-23 91.7
Msa1123780 AT5G62880.2 32.075 159 95 5 15 162 8 164 5.92e-22 89.4
Msa1123780 AT4G35020.4 36.207 116 71 3 15 129 6 119 8.89e-19 79.7
Msa1123780 AT4G35020.5 36.207 116 71 3 15 129 6 119 8.89e-19 79.7
Msa1123780 AT5G46025.1 35.294 102 64 2 77 177 6 106 1.55e-15 70.5
Msa1123780 AT3G51290.2 30.769 143 86 6 44 175 636 776 7.77e-13 67.4
Msa1123780 AT5G37680.1 27.215 158 108 3 16 170 20 173 4.17e-12 62.8
Msa1123780 AT2G15310.1 28.058 139 88 6 16 153 18 145 1.37e-11 62.0

Find 91 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACTCAGATTCAGTTATT+TGG 0.114215 7_3:+74767463 None:intergenic
CACGGTGTGGTTAACATTTA+TGG 0.143277 7_3:-74767491 Msa1123780:three_prime_UTR
CTCATTAAACTTCTCCTAAT+TGG 0.159282 7_3:-74769923 Msa1123780:CDS
GTTCCTGCTTTAAGCCTTAT+TGG 0.168990 7_3:+74767536 None:intergenic
AGCGAATCAAATTGCAAATA+TGG 0.180362 7_3:-74769562 Msa1123780:CDS
CACACATTCATTCTTGAGTT+TGG 0.211920 7_3:-74767408 Msa1123780:three_prime_UTR
TTAGGCTGTGCCAACTTCTA+AGG 0.253740 7_3:-74768296 Msa1123780:intron
CTGCATGTTGTGGTTCTTAA+TGG 0.257090 7_3:-74767773 Msa1123780:exon
TCAGCATTGATTTCAAAATA+AGG 0.261517 7_3:-74769604 Msa1123780:intron
GTTGGTTAATCTTGATTGTC+TGG 0.270643 7_3:+74767835 None:intergenic
TTCCTTTCTTGAAGCCAATA+AGG 0.303057 7_3:-74767550 Msa1123780:three_prime_UTR
TCACTAGTTGAGCGTTGAAT+TGG 0.317922 7_3:+74770222 None:intergenic
TGACAATGTTAACAAGATAT+TGG 0.321340 7_3:-74768459 Msa1123780:CDS
TCACTCAGATTCAGTTATTT+GGG 0.335202 7_3:+74767464 None:intergenic
TCATCTCATGTCCAGATATC+AGG 0.336735 7_3:-74768514 Msa1123780:intron
TGGTCAAGGAACTTATGATA+TGG 0.358979 7_3:-74767274 Msa1123780:three_prime_UTR
CAAGCGCTTGCAGATGAATA+TGG 0.360715 7_3:-74768271 Msa1123780:CDS
CACTAGTTGAGCGTTGAATT+GGG 0.367061 7_3:+74770223 None:intergenic
CCTGGGCAGCCCCTGCTCCC+TGG 0.373973 7_3:+74767808 None:intergenic
ACCACACCATACTTGGCTTA+TGG 0.376966 7_3:-74767515 Msa1123780:three_prime_UTR
TGGTACCGCTATCACCAATT+AGG 0.378492 7_3:+74769909 None:intergenic
AGCAGGAACCACACCATACT+TGG 0.381808 7_3:-74767522 Msa1123780:three_prime_UTR
GCAGCCCCTGCTCCCTGGTC+TGG 0.385231 7_3:+74767813 None:intergenic
AGGAAAGTTAAGATCTAAAC+AGG 0.396767 7_3:+74770141 None:intergenic
TTGGTTAATCTTGATTGTCT+GGG 0.400239 7_3:+74767836 None:intergenic
ATAAGGACAATTGAGCTTGA+TGG 0.403140 7_3:-74769587 Msa1123780:CDS
CCAGGGAGCAGGGGCTGCCC+AGG 0.406408 7_3:-74767808 Msa1123780:CDS
CATGTCCAGATATCAGGAAT+TGG 0.411917 7_3:-74768508 Msa1123780:intron
TCGGACACTCGCAGAGGAAT+AGG 0.419201 7_3:-74770002 Msa1123780:intron
GCGAATCAAATTGCAAATAT+GGG 0.419547 7_3:-74769561 Msa1123780:CDS
AGCCTTATTGGCTTCAAGAA+AGG 0.428738 7_3:+74767548 None:intergenic
CCGTGACCATAAGCCAAGTA+TGG 0.430523 7_3:+74767509 None:intergenic
ATCGTAATCAGCACGAGCTC+TGG 0.430906 7_3:+74769949 None:intergenic
CATAATTAATTTCCCAACAT+AGG 0.431227 7_3:+74767629 None:intergenic
CCCCTGCTCCCTGGTCTGGT+TGG 0.433352 7_3:+74767817 None:intergenic
CGATTTCGAACTATCACAAC+TGG 0.433779 7_3:-74769521 Msa1123780:intron
AGAGAAAAGGAAAGAAAAGA+GGG 0.437595 7_3:+74770176 None:intergenic
GAGAGAAAAGGAAAGAAAAG+AGG 0.440554 7_3:+74770175 None:intergenic
AGAATGAATGTGTGGATGTC+TGG 0.447349 7_3:+74767417 None:intergenic
TGCATGTTGTGGTTCTTAAT+GGG 0.450982 7_3:-74767772 Msa1123780:exon
GCCTATGTTTATTTCTGCTG+TGG 0.464643 7_3:-74767334 Msa1123780:three_prime_UTR
GAAAACGAGAAAGAGAGAAA+AGG 0.470733 7_3:+74770163 None:intergenic
GTTCTTAATGGGAAGCTTGA+GGG 0.477784 7_3:-74767761 Msa1123780:exon
TTTACTTGTATATGACGTTA+CGG 0.479177 7_3:-74768757 Msa1123780:CDS
TCATATCATATTAATTAAAA+CGG 0.479699 7_3:+74767225 None:intergenic
ATAATTAATTTCCCAACATA+GGG 0.480029 7_3:+74767630 None:intergenic
TTCCTCTTCCTCATCTTCAC+AGG 0.480337 7_3:-74770123 Msa1123780:intron
AGTTCGAAATCGCTCTTGAC+CGG 0.481009 7_3:+74769532 None:intergenic
AACCAACCAGACCAGGGAGC+AGG 0.489253 7_3:-74767819 Msa1123780:CDS
TGCTACTCATTGGGTTGGAA+TGG 0.494378 7_3:-74767661 Msa1123780:three_prime_UTR
ACAGTTGCTACTCATTGGGT+TGG 0.505420 7_3:-74767666 Msa1123780:three_prime_UTR
CATATTCATCTGCAAGCGCT+TGG 0.507439 7_3:+74768272 None:intergenic
CAAGATTAACCAACCAGACC+AGG 0.511143 7_3:-74767826 Msa1123780:CDS
TACCTGTGAAGATGAGGAAG+AGG 0.514002 7_3:+74770121 None:intergenic
AGCGCTTGGCCCTTAGAAGT+TGG 0.514221 7_3:+74768286 None:intergenic
AGCTTACTACCGTGGAGCCA+TGG 0.521985 7_3:-74768784 Msa1123780:CDS
TCTTGAGTTTGGAGTTTCAA+AGG 0.522996 7_3:-74767397 Msa1123780:three_prime_UTR
TAGGCTGTGCCAACTTCTAA+GGG 0.524551 7_3:-74768295 Msa1123780:CDS
AGAATGAAAAGAAGAATCAA+AGG 0.526724 7_3:-74770283 Msa1123780:five_prime_UTR
AACAAATCTGAATGTGGAGG+AGG 0.528959 7_3:-74768133 Msa1123780:CDS
CTGACATGGATGAAAGCAAA+CGG 0.531518 7_3:-74768424 Msa1123780:CDS
GCTTACTACCGTGGAGCCAT+GGG 0.548016 7_3:-74768783 Msa1123780:CDS
TGGAAATACCTGTGAAGATG+AGG 0.548935 7_3:+74770115 None:intergenic
TGACATGGATGAAAGCAAAC+GGG 0.551245 7_3:-74768423 Msa1123780:intron
AATGTTAACAAGATATTGGT+GGG 0.552268 7_3:-74768455 Msa1123780:CDS
TAATCAGCACGAGCTCTGGC+AGG 0.555758 7_3:+74769953 None:intergenic
CCATACTTGGCTTATGGTCA+CGG 0.557303 7_3:-74767509 Msa1123780:three_prime_UTR
ACCAACCAGACCAGGGAGCA+GGG 0.559075 7_3:-74767818 Msa1123780:CDS
GGTTCTTAATGGGAAGCTTG+AGG 0.564712 7_3:-74767762 Msa1123780:exon
TGGTTAATCTTGATTGTCTG+GGG 0.566856 7_3:+74767837 None:intergenic
CAATGTTAACAAGATATTGG+TGG 0.567581 7_3:-74768456 Msa1123780:CDS
ACTAGTTGAGCGTTGAATTG+GGG 0.584990 7_3:+74770224 None:intergenic
GAATGAAAAGAAGAATCAAA+GGG 0.587691 7_3:-74770282 Msa1123780:five_prime_UTR
AGTTTGGAGTTTCAAAGGCG+TGG 0.595003 7_3:-74767392 Msa1123780:three_prime_UTR
TCAGCACGAGCTCTGGCAGG+TGG 0.599524 7_3:+74769956 None:intergenic
GTAAAATACCCATGGCTCCA+CGG 0.601071 7_3:+74768775 None:intergenic
TTGCAAATATGGGACACAGC+CGG 0.602143 7_3:-74769551 Msa1123780:CDS
TGCTAAAACAAATCTGAATG+TGG 0.604329 7_3:-74768139 Msa1123780:CDS
AAGCCAATAAGGCTTAAAGC+AGG 0.605417 7_3:-74767539 Msa1123780:three_prime_UTR
CTTCTCCTAATTGGTGATAG+CGG 0.620219 7_3:-74769914 Msa1123780:intron
CCAACCAGACCAGGGAGCAG+GGG 0.621818 7_3:-74767817 Msa1123780:CDS
GGTGGGCAACAAAGCTGACA+TGG 0.624736 7_3:-74768438 Msa1123780:CDS
AGATACTGACTCAAAATCTG+AGG 0.634590 7_3:-74768070 Msa1123780:intron
ATATACAAGTAAAATACCCA+TGG 0.634609 7_3:+74768767 None:intergenic
TAAAACAAATCTGAATGTGG+AGG 0.641771 7_3:-74768136 Msa1123780:CDS
ACCACAGCAGAAATAAACAT+AGG 0.642974 7_3:+74767333 None:intergenic
ACCATAAGCCAAGTATGGTG+TGG 0.653928 7_3:+74767514 None:intergenic
CAAACTCAAGAATGAATGTG+TGG 0.658578 7_3:+74767409 None:intergenic
CTTGGCTTATGGTCACGGTG+TGG 0.658669 7_3:-74767504 Msa1123780:three_prime_UTR
AAGATTAACCAACCAGACCA+GGG 0.666777 7_3:-74767825 Msa1123780:CDS
GTGGATGTCTGGCATCAATG+TGG 0.721252 7_3:+74767428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAAAAAAAAGTC+GGG + chr7_3:74769494-74769513 None:intergenic 10.0%
!! GTTAAAAAAAAAAAAAAAGT+CGG + chr7_3:74769495-74769514 None:intergenic 10.0%
!! TCATATCATATTAATTAAAA+CGG + chr7_3:74770277-74770296 None:intergenic 10.0%
!! TAATATTACAATAACAACAA+AGG + chr7_3:74768585-74768604 None:intergenic 15.0%
!! ATTTACATATACAAAATCAT+AGG + chr7_3:74768658-74768677 None:intergenic 15.0%
!! AAAGATGCAATTATAAAAAA+GGG + chr7_3:74769517-74769536 None:intergenic 15.0%
!!! TTTTTCTCTTCATTAATGAT+CGG - chr7_3:74767478-74767497 Msa1123780:three_prime_UTR 20.0%
!! CCAAACATAGAAAATAAAAA+TGG + chr7_3:74767613-74767632 None:intergenic 20.0%
!!! CCATTTTTATTTTCTATGTT+TGG - chr7_3:74767610-74767629 Msa1123780:three_prime_UTR 20.0%
!!! TTATTTTCTATGTTTGGTAA+TGG - chr7_3:74767616-74767635 Msa1123780:three_prime_UTR 20.0%
!!! GATTATGCTATTTTTCATAT+TGG - chr7_3:74767713-74767732 Msa1123780:three_prime_UTR 20.0%
!! GAATTTAAGGATAATAAAAG+AGG + chr7_3:74768828-74768847 None:intergenic 20.0%
!! TACGAAGATATTACAATTTA+AGG + chr7_3:74768857-74768876 None:intergenic 20.0%
!!! TTTTATGTACTTATATGCAT+TGG - chr7_3:74769137-74769156 Msa1123780:intron 20.0%
!! TTTATGTACTTATATGCATT+GGG - chr7_3:74769138-74769157 Msa1123780:intron 20.0%
!! AATCAATGATAACTAGTAAA+AGG + chr7_3:74769467-74769486 None:intergenic 20.0%
!! GAAAGATGCAATTATAAAAA+AGG + chr7_3:74769518-74769537 None:intergenic 20.0%
!!! TTTTATAATTGCATCTTTCA+CGG - chr7_3:74769519-74769538 Msa1123780:intron 20.0%
!! ATAATTAATTTCCCAACATA+GGG + chr7_3:74769872-74769891 None:intergenic 20.0%
!!! AACTCTTAATTTTGTCATTT+TGG + chr7_3:74770142-74770161 None:intergenic 20.0%
! AGAATGAAAAGAAGAATCAA+AGG - chr7_3:74767216-74767235 Msa1123780:three_prime_UTR 25.0%
! GAATGAAAAGAAGAATCAAA+GGG - chr7_3:74767217-74767236 Msa1123780:three_prime_UTR 25.0%
! TCAATAAATGAAGAGAAAAG+TGG + chr7_3:74767407-74767426 None:intergenic 25.0%
! TTGTGCAATCATGTAATATT+TGG - chr7_3:74767823-74767842 Msa1123780:CDS 25.0%
! GACATCACAAAAGAATAAAA+CGG + chr7_3:74767851-74767870 None:intergenic 25.0%
!!! TCAGCATTGATTTCAAAATA+AGG - chr7_3:74767895-74767914 Msa1123780:intron 25.0%
! AACATAGTGTAAAACATTAC+AGG + chr7_3:74768048-74768067 None:intergenic 25.0%
!! GTAATGTTTTACACTATGTT+TGG - chr7_3:74768048-74768067 Msa1123780:intron 25.0%
! TATTAGAGAAACTTCTTTCA+TGG - chr7_3:74768478-74768497 Msa1123780:CDS 25.0%
! ATATACAAGTAAAATACCCA+TGG + chr7_3:74768735-74768754 None:intergenic 25.0%
! TTTACTTGTATATGACGTTA+CGG - chr7_3:74768742-74768761 Msa1123780:CDS 25.0%
! TAAGGATAATAAAAGAGGAA+TGG + chr7_3:74768823-74768842 None:intergenic 25.0%
! TTTAAGGAAACACGAATTTA+AGG + chr7_3:74768841-74768860 None:intergenic 25.0%
! TAATTGTGTTCACTGTATAA+TGG + chr7_3:74768886-74768905 None:intergenic 25.0%
! TGACAATGTTAACAAGATAT+TGG - chr7_3:74769040-74769059 Msa1123780:intron 25.0%
! AATGTTAACAAGATATTGGT+GGG - chr7_3:74769044-74769063 Msa1123780:intron 25.0%
!!! CAAAATCTGAGGTTTTATTT+TGG - chr7_3:74769440-74769459 Msa1123780:intron 25.0%
!! GAGTGATTTTTGTTAAACTT+AGG + chr7_3:74769585-74769604 None:intergenic 25.0%
! CATAATTAATTTCCCAACAT+AGG + chr7_3:74769873-74769892 None:intergenic 25.0%
!! AAACTGAGAAATAACTTTTG+TGG - chr7_3:74770205-74770224 Msa1123780:five_prime_UTR 25.0%
AGAGAAAAGGAAAGAAAAGA+GGG + chr7_3:74767326-74767345 None:intergenic 30.0%
AGGAAAGTTAAGATCTAAAC+AGG + chr7_3:74767361-74767380 None:intergenic 30.0%
!!! ATAGGTTTTGTTTGTTTCGA+TGG - chr7_3:74767515-74767534 Msa1123780:three_prime_UTR 30.0%
CTCATTAAACTTCTCCTAAT+TGG - chr7_3:74767576-74767595 Msa1123780:three_prime_UTR 30.0%
!! GTTTGATTTTGTGAAAGCTA+CGG + chr7_3:74767671-74767690 None:intergenic 30.0%
CAAACAAGTACTTAGTACTT+TGG - chr7_3:74767686-74767705 Msa1123780:three_prime_UTR 30.0%
!!! ATGCTATTTTTCATATTGGC+AGG - chr7_3:74767717-74767736 Msa1123780:three_prime_UTR 30.0%
! TTTTATTGCGTTTCTCTGAT+GGG - chr7_3:74767757-74767776 Msa1123780:exon 30.0%
!!! ACTAGTTTTATCACAACCAT+TGG - chr7_3:74767789-74767808 Msa1123780:CDS 30.0%
!!! CTAGTTTTATCACAACCATT+GGG - chr7_3:74767790-74767809 Msa1123780:CDS 30.0%
AGCGAATCAAATTGCAAATA+TGG - chr7_3:74767937-74767956 Msa1123780:intron 30.0%
GCGAATCAAATTGCAAATAT+GGG - chr7_3:74767938-74767957 Msa1123780:intron 30.0%
!! TTCTAGCTTCACAAAAATCA+TGG + chr7_3:74768117-74768136 None:intergenic 30.0%
! ATTTTTGTGAAGCTAGAAGT+TGG - chr7_3:74768119-74768138 Msa1123780:CDS 30.0%
! ACACAAATTCGTCCATTTTA+TGG - chr7_3:74768155-74768174 Msa1123780:intron 30.0%
! CACAAATTCGTCCATTTTAT+GGG - chr7_3:74768156-74768175 Msa1123780:intron 30.0%
TGTTTAACGTAAGAGAGAAT+GGG + chr7_3:74768800-74768819 None:intergenic 30.0%
CAATGTTAACAAGATATTGG+TGG - chr7_3:74769043-74769062 Msa1123780:intron 30.0%
TCATTCTCATTCATACTTGT+TGG - chr7_3:74769110-74769129 Msa1123780:intron 30.0%
TGCTAAAACAAATCTGAATG+TGG - chr7_3:74769360-74769379 Msa1123780:intron 30.0%
TAAAACAAATCTGAATGTGG+AGG - chr7_3:74769363-74769382 Msa1123780:intron 30.0%
! AGGTTTTCTTTTCAATAGCT+CGG - chr7_3:74769386-74769405 Msa1123780:intron 30.0%
TTTGTTAAACTTAGGATGCA+AGG + chr7_3:74769577-74769596 None:intergenic 30.0%
GTTTAACAAAAATCACTCTC+CGG - chr7_3:74769587-74769606 Msa1123780:CDS 30.0%
TTTAACAAAAATCACTCTCC+GGG - chr7_3:74769588-74769607 Msa1123780:CDS 30.0%
ACAAAATGGAAAACTTAGCA+TGG + chr7_3:74769633-74769652 None:intergenic 30.0%
TTGGTTAATCTTGATTGTCT+GGG + chr7_3:74769666-74769685 None:intergenic 30.0%
! TTTTACAGTTGCTACTCATT+GGG - chr7_3:74769829-74769848 Msa1123780:intron 30.0%
TCACTCAGATTCAGTTATTT+GGG + chr7_3:74770038-74770057 None:intergenic 30.0%
! AGAAATAACTTTTGTGGTCA+AGG - chr7_3:74770211-74770230 Msa1123780:five_prime_UTR 30.0%
GAGAGAAAAGGAAAGAAAAG+AGG + chr7_3:74767327-74767346 None:intergenic 35.0%
GAAAACGAGAAAGAGAGAAA+AGG + chr7_3:74767339-74767358 None:intergenic 35.0%
! TTTTTCATATTGGCAGGTGT+TGG - chr7_3:74767723-74767742 Msa1123780:three_prime_UTR 35.0%
! CTTTTATTGCGTTTCTCTGA+TGG - chr7_3:74767756-74767775 Msa1123780:three_prime_UTR 35.0%
! TTTTATCACAACCATTGGGT+AGG - chr7_3:74767794-74767813 Msa1123780:CDS 35.0%
ATAAGGACAATTGAGCTTGA+TGG - chr7_3:74767912-74767931 Msa1123780:intron 35.0%
ATCCAAACAAGCCCATAAAA+TGG + chr7_3:74768170-74768189 None:intergenic 35.0%
CGCTTATATAAGCTTGCATA+AGG - chr7_3:74768233-74768252 Msa1123780:intron 35.0%
! TGGTTTGAGTTTCCATTTAG+CGG - chr7_3:74768498-74768517 Msa1123780:CDS 35.0%
! ATGTAACTGATTCCACCTAA+TGG - chr7_3:74768553-74768572 Msa1123780:intron 35.0%
GTTTAACGTAAGAGAGAATG+GGG + chr7_3:74768799-74768818 None:intergenic 35.0%
GTGTTTAACGTAAGAGAGAA+TGG + chr7_3:74768801-74768820 None:intergenic 35.0%
!! AAGCATTGAAAGCCAATTGT+CGG + chr7_3:74768923-74768942 None:intergenic 35.0%
AAGCGCTATTACATGACAAT+AGG - chr7_3:74768955-74768974 Msa1123780:intron 35.0%
AGTATGAATGAGAATGAGAG+AGG + chr7_3:74769107-74769126 None:intergenic 35.0%
TATCCATCAATGTTCCCTTT+AGG - chr7_3:74769185-74769204 Msa1123780:intron 35.0%
!!! TTTGTTTTAGCACTCTGTAC+AGG + chr7_3:74769352-74769371 None:intergenic 35.0%
! GGTTTTCTTTTCAATAGCTC+GGG - chr7_3:74769387-74769406 Msa1123780:intron 35.0%
!! AGATACTGACTCAAAATCTG+AGG - chr7_3:74769429-74769448 Msa1123780:intron 35.0%
TGGTTAATCTTGATTGTCTG+GGG + chr7_3:74769665-74769684 None:intergenic 35.0%
GTTGGTTAATCTTGATTGTC+TGG + chr7_3:74769667-74769686 None:intergenic 35.0%
! ACCACAACATGCAGATTTTT+GGG + chr7_3:74769720-74769739 None:intergenic 35.0%
! AACCACAACATGCAGATTTT+TGG + chr7_3:74769721-74769740 None:intergenic 35.0%
TGCATGTTGTGGTTCTTAAT+GGG - chr7_3:74769727-74769746 Msa1123780:CDS 35.0%
! GTTTTACAGTTGCTACTCAT+TGG - chr7_3:74769828-74769847 Msa1123780:intron 35.0%
! ATGGTAGATTTTCCCTATGT+TGG - chr7_3:74769857-74769876 Msa1123780:intron 35.0%
! TGGTAGATTTTCCCTATGTT+GGG - chr7_3:74769858-74769877 Msa1123780:intron 35.0%
!! CTTAAACCCACTCTTTTTCA+GGG - chr7_3:74769908-74769927 Msa1123780:intron 35.0%
!!! TTAAACCCACTCTTTTTCAG+GGG - chr7_3:74769909-74769928 Msa1123780:intron 35.0%
TTCCTTTCTTGAAGCCAATA+AGG - chr7_3:74769949-74769968 Msa1123780:CDS 35.0%
GTCACTCAGATTCAGTTATT+TGG + chr7_3:74770039-74770058 None:intergenic 35.0%
CAAACTCAAGAATGAATGTG+TGG + chr7_3:74770093-74770112 None:intergenic 35.0%
CACACATTCATTCTTGAGTT+TGG - chr7_3:74770091-74770110 Msa1123780:intron 35.0%
! TCTTGAGTTTGGAGTTTCAA+AGG - chr7_3:74770102-74770121 Msa1123780:intron 35.0%
ACCACAGCAGAAATAAACAT+AGG + chr7_3:74770169-74770188 None:intergenic 35.0%
TGGTCAAGGAACTTATGATA+TGG - chr7_3:74770225-74770244 Msa1123780:five_prime_UTR 35.0%
! GGAACATTTTCTGCATGTTT+AGG + chr7_3:74770256-74770275 None:intergenic 35.0%
!! ACTAGTTGAGCGTTGAATTG+GGG + chr7_3:74767278-74767297 None:intergenic 40.0%
!! CACTAGTTGAGCGTTGAATT+GGG + chr7_3:74767279-74767298 None:intergenic 40.0%
!! TCACTAGTTGAGCGTTGAAT+TGG + chr7_3:74767280-74767299 None:intergenic 40.0%
TGGAAATACCTGTGAAGATG+AGG + chr7_3:74767387-74767406 None:intergenic 40.0%
! CTTCTCCTAATTGGTGATAG+CGG - chr7_3:74767585-74767604 Msa1123780:three_prime_UTR 40.0%
!! GTTTGGTAATGGTATCACTC+TGG - chr7_3:74767627-74767646 Msa1123780:three_prime_UTR 40.0%
TTTGTGAAAGCTACGGAGTA+TGG + chr7_3:74767664-74767683 None:intergenic 40.0%
CACAAAAGAAACCTACCCAA+TGG + chr7_3:74767808-74767827 None:intergenic 40.0%
CGATTTCGAACTATCACAAC+TGG - chr7_3:74767978-74767997 Msa1123780:intron 40.0%
GAACATTAGGACGTGAGAAA+TGG + chr7_3:74768089-74768108 None:intergenic 40.0%
AATCATGGCCAGAGAACATT+AGG + chr7_3:74768102-74768121 None:intergenic 40.0%
!! GTCCATTTTATGGGCTTGTT+TGG - chr7_3:74768165-74768184 Msa1123780:intron 40.0%
GTCTAGTCACATGCTTAAAG+TGG + chr7_3:74768402-74768421 None:intergenic 40.0%
! GGTTTGAGTTTCCATTTAGC+GGG - chr7_3:74768499-74768518 Msa1123780:CDS 40.0%
! GTTTGAGTTTCCATTTAGCG+GGG - chr7_3:74768500-74768519 Msa1123780:CDS 40.0%
! TTTGAGTTTCCATTTAGCGG+GGG - chr7_3:74768501-74768520 Msa1123780:CDS 40.0%
CTGATTCCACCTAATGGAAA+AGG - chr7_3:74768559-74768578 Msa1123780:intron 40.0%
! CAACAAAGGCCTTTTCCATT+AGG + chr7_3:74768571-74768590 None:intergenic 40.0%
TAACAGTTCAACCCGACAAT+TGG - chr7_3:74768908-74768927 Msa1123780:intron 40.0%
! AGCATTGAAAGCCAATTGTC+GGG + chr7_3:74768922-74768941 None:intergenic 40.0%
TCATCTCATGTCCAGATATC+AGG - chr7_3:74768985-74769004 Msa1123780:intron 40.0%
CATGTCCAGATATCAGGAAT+TGG - chr7_3:74768991-74769010 Msa1123780:intron 40.0%
CGAATCCAATTCCTGATATC+TGG + chr7_3:74768999-74769018 None:intergenic 40.0%
CTGACATGGATGAAAGCAAA+CGG - chr7_3:74769075-74769094 Msa1123780:intron 40.0%
TGACATGGATGAAAGCAAAC+GGG - chr7_3:74769076-74769095 Msa1123780:intron 40.0%
AACAAATCTGAATGTGGAGG+AGG - chr7_3:74769366-74769385 Msa1123780:intron 40.0%
ACTGATGAGAGAATTCAACC+CGG + chr7_3:74769609-74769628 None:intergenic 40.0%
AAGATTAACCAACCAGACCA+GGG - chr7_3:74769674-74769693 Msa1123780:intron 40.0%
!! ACAACATGCAGATTTTTGGG+CGG + chr7_3:74769717-74769736 None:intergenic 40.0%
CTGCATGTTGTGGTTCTTAA+TGG - chr7_3:74769726-74769745 Msa1123780:CDS 40.0%
GTTCTTAATGGGAAGCTTGA+GGG - chr7_3:74769738-74769757 Msa1123780:CDS 40.0%
! GCTTAAACCCACTCTTTTTC+AGG - chr7_3:74769907-74769926 Msa1123780:intron 40.0%
!! AGCCTTATTGGCTTCAAGAA+AGG + chr7_3:74769954-74769973 None:intergenic 40.0%
AAGCCAATAAGGCTTAAAGC+AGG - chr7_3:74769960-74769979 Msa1123780:CDS 40.0%
! GTTCCTGCTTTAAGCCTTAT+TGG + chr7_3:74769966-74769985 None:intergenic 40.0%
CACGGTGTGGTTAACATTTA+TGG - chr7_3:74770008-74770027 Msa1123780:intron 40.0%
AGAATGAATGTGTGGATGTC+TGG + chr7_3:74770085-74770104 None:intergenic 40.0%
!! GCCTATGTTTATTTCTGCTG+TGG - chr7_3:74770165-74770184 Msa1123780:five_prime_UTR 40.0%
TTCCTCTTCCTCATCTTCAC+AGG - chr7_3:74767376-74767395 Msa1123780:three_prime_UTR 45.0%
TACCTGTGAAGATGAGGAAG+AGG + chr7_3:74767381-74767400 None:intergenic 45.0%
TGGTACCGCTATCACCAATT+AGG + chr7_3:74767593-74767612 None:intergenic 45.0%
TTGCAAATATGGGACACAGC+CGG - chr7_3:74767948-74767967 Msa1123780:intron 45.0%
AGTTCGAAATCGCTCTTGAC+CGG + chr7_3:74767970-74767989 None:intergenic 45.0%
TCTCACGTCCTAATGTTCTC+TGG - chr7_3:74768091-74768110 Msa1123780:CDS 45.0%
TTGAGTTTCCATTTAGCGGG+GGG - chr7_3:74768502-74768521 Msa1123780:CDS 45.0%
! CAAAGGCCTTTTCCATTAGG+TGG + chr7_3:74768568-74768587 None:intergenic 45.0%
CGGTAGTAAGCTGCAAAAGA+AGG + chr7_3:74768707-74768726 None:intergenic 45.0%
! TCTTTTGCAGCTTACTACCG+TGG - chr7_3:74768707-74768726 Msa1123780:intron 45.0%
GTAAAATACCCATGGCTCCA+CGG + chr7_3:74768727-74768746 None:intergenic 45.0%
CAGCCTAAAGGGAACATTGA+TGG + chr7_3:74769191-74769210 None:intergenic 45.0%
AGAAGTTGGCACAGCCTAAA+GGG + chr7_3:74769202-74769221 None:intergenic 45.0%
TAGAAGTTGGCACAGCCTAA+AGG + chr7_3:74769203-74769222 None:intergenic 45.0%
TTAGGCTGTGCCAACTTCTA+AGG - chr7_3:74769203-74769222 Msa1123780:intron 45.0%
TAGGCTGTGCCAACTTCTAA+GGG - chr7_3:74769204-74769223 Msa1123780:intron 45.0%
CATATTCATCTGCAAGCGCT+TGG + chr7_3:74769230-74769249 None:intergenic 45.0%
CAAGCGCTTGCAGATGAATA+TGG - chr7_3:74769228-74769247 Msa1123780:intron 45.0%
TGGGGCTGCAAAGAACAAAA+TGG + chr7_3:74769647-74769666 None:intergenic 45.0%
CAAGATTAACCAACCAGACC+AGG - chr7_3:74769673-74769692 Msa1123780:intron 45.0%
GCCCAAAAATCTGCATGTTG+TGG - chr7_3:74769716-74769735 Msa1123780:CDS 45.0%
GGTTCTTAATGGGAAGCTTG+AGG - chr7_3:74769737-74769756 Msa1123780:CDS 45.0%
ACAGTTGCTACTCATTGGGT+TGG - chr7_3:74769833-74769852 Msa1123780:intron 45.0%
!! TGCTACTCATTGGGTTGGAA+TGG - chr7_3:74769838-74769857 Msa1123780:intron 45.0%
ACCACACCATACTTGGCTTA+TGG - chr7_3:74769984-74770003 Msa1123780:exon 45.0%
ACCATAAGCCAAGTATGGTG+TGG + chr7_3:74769988-74770007 None:intergenic 45.0%
CCATACTTGGCTTATGGTCA+CGG - chr7_3:74769990-74770009 Msa1123780:five_prime_UTR 45.0%
! AGTTTGGAGTTTCAAAGGCG+TGG - chr7_3:74770107-74770126 Msa1123780:intron 45.0%
!! TATCTAATAATAATAATAAT+TGG + chr7_3:74767445-74767464 None:intergenic 5.0%
TAATGATCGGACACTCGCAG+AGG - chr7_3:74767491-74767510 Msa1123780:three_prime_UTR 50.0%
ATCGTAATCAGCACGAGCTC+TGG + chr7_3:74767553-74767572 None:intergenic 50.0%
CCAAGCCCCTGAAAAAGAGT+GGG + chr7_3:74769917-74769936 None:intergenic 50.0%
ACCAAGCCCCTGAAAAAGAG+TGG + chr7_3:74769918-74769937 None:intergenic 50.0%
AGCAGGAACCACACCATACT+TGG - chr7_3:74769977-74769996 Msa1123780:exon 50.0%
CCGTGACCATAAGCCAAGTA+TGG + chr7_3:74769993-74770012 None:intergenic 50.0%
GTGGATGTCTGGCATCAATG+TGG + chr7_3:74770074-74770093 None:intergenic 50.0%
TCGGACACTCGCAGAGGAAT+AGG - chr7_3:74767497-74767516 Msa1123780:three_prime_UTR 55.0%
! TAATCAGCACGAGCTCTGGC+AGG + chr7_3:74767549-74767568 None:intergenic 55.0%
ATGTCTTGCCCCCCGCTAAA+TGG + chr7_3:74768513-74768532 None:intergenic 55.0%
AGCTTACTACCGTGGAGCCA+TGG - chr7_3:74768715-74768734 Msa1123780:intron 55.0%
GCTTACTACCGTGGAGCCAT+GGG - chr7_3:74768716-74768735 Msa1123780:intron 55.0%
GGTGGGCAACAAAGCTGACA+TGG - chr7_3:74769061-74769080 Msa1123780:intron 55.0%
AGCGCTTGGCCCTTAGAAGT+TGG + chr7_3:74769216-74769235 None:intergenic 55.0%
!! TGCAGATTTTTGGGCGGCCT+GGG + chr7_3:74769711-74769730 None:intergenic 55.0%
!! ATGCAGATTTTTGGGCGGCC+TGG + chr7_3:74769712-74769731 None:intergenic 55.0%
!!! CCCACTCTTTTTCAGGGGCT+TGG - chr7_3:74769914-74769933 Msa1123780:intron 55.0%
CTTGGCTTATGGTCACGGTG+TGG - chr7_3:74769995-74770014 Msa1123780:intron 55.0%
AACCAACCAGACCAGGGAGC+AGG - chr7_3:74769680-74769699 Msa1123780:intron 60.0%
ACCAACCAGACCAGGGAGCA+GGG - chr7_3:74769681-74769700 Msa1123780:intron 60.0%
! TCAGCACGAGCTCTGGCAGG+TGG + chr7_3:74767546-74767565 None:intergenic 65.0%
CCAACCAGACCAGGGAGCAG+GGG - chr7_3:74769682-74769701 Msa1123780:intron 65.0%
CCCCTGCTCCCTGGTCTGGT+TGG + chr7_3:74769685-74769704 None:intergenic 70.0%
GCAGCCCCTGCTCCCTGGTC+TGG + chr7_3:74769689-74769708 None:intergenic 75.0%
! CCTGGGCAGCCCCTGCTCCC+TGG + chr7_3:74769694-74769713 None:intergenic 80.0%
! CCAGGGAGCAGGGGCTGCCC+AGG - chr7_3:74769691-74769710 Msa1123780:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74767210 74770311 74767210 ID=Msa1123780;Name=Msa1123780
chr7_3 mRNA 74767210 74770311 74767210 ID=Msa1123780-mRNA-1;Parent=Msa1123780;Name=Msa1123780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=211|1|1|1|0.87|0.77|9|566|216
chr7_3 exon 74767210 74767859 74767210 ID=Msa1123780-mRNA-1:exon:19937;Parent=Msa1123780-mRNA-1
chr7_3 exon 74768071 74768163 74768071 ID=Msa1123780-mRNA-1:exon:19936;Parent=Msa1123780-mRNA-1
chr7_3 exon 74768252 74768314 74768252 ID=Msa1123780-mRNA-1:exon:19935;Parent=Msa1123780-mRNA-1
chr7_3 exon 74768424 74768521 74768424 ID=Msa1123780-mRNA-1:exon:19934;Parent=Msa1123780-mRNA-1
chr7_3 exon 74768739 74768804 74768739 ID=Msa1123780-mRNA-1:exon:19933;Parent=Msa1123780-mRNA-1
chr7_3 exon 74769522 74769622 74769522 ID=Msa1123780-mRNA-1:exon:19932;Parent=Msa1123780-mRNA-1
chr7_3 exon 74769710 74769782 74769710 ID=Msa1123780-mRNA-1:exon:19931;Parent=Msa1123780-mRNA-1
chr7_3 exon 74769915 74770010 74769915 ID=Msa1123780-mRNA-1:exon:19930;Parent=Msa1123780-mRNA-1
chr7_3 exon 74770124 74770311 74770124 ID=Msa1123780-mRNA-1:exon:19929;Parent=Msa1123780-mRNA-1
chr7_3 five_prime_UTR 74770124 74770311 74770124 ID=Msa1123780-mRNA-1:five_prime_utr;Parent=Msa1123780-mRNA-1
chr7_3 five_prime_UTR 74769988 74770010 74769988 ID=Msa1123780-mRNA-1:five_prime_utr;Parent=Msa1123780-mRNA-1
chr7_3 CDS 74769915 74769987 74769915 ID=Msa1123780-mRNA-1:cds;Parent=Msa1123780-mRNA-1
chr7_3 CDS 74769710 74769782 74769710 ID=Msa1123780-mRNA-1:cds;Parent=Msa1123780-mRNA-1
chr7_3 CDS 74769522 74769622 74769522 ID=Msa1123780-mRNA-1:cds;Parent=Msa1123780-mRNA-1
chr7_3 CDS 74768739 74768804 74768739 ID=Msa1123780-mRNA-1:cds;Parent=Msa1123780-mRNA-1
chr7_3 CDS 74768424 74768521 74768424 ID=Msa1123780-mRNA-1:cds;Parent=Msa1123780-mRNA-1
chr7_3 CDS 74768252 74768314 74768252 ID=Msa1123780-mRNA-1:cds;Parent=Msa1123780-mRNA-1
chr7_3 CDS 74768071 74768163 74768071 ID=Msa1123780-mRNA-1:cds;Parent=Msa1123780-mRNA-1
chr7_3 CDS 74767776 74767859 74767776 ID=Msa1123780-mRNA-1:cds;Parent=Msa1123780-mRNA-1
chr7_3 three_prime_UTR 74767210 74767775 74767210 ID=Msa1123780-mRNA-1:three_prime_utr;Parent=Msa1123780-mRNA-1
Gene Sequence

>Msa1123780

ATGGCTGCTCCACCTGCCAGAGCTCGTGCTGATTACGATTATCTCATTAAACTTCTCCTAATTGGTGATAGCGGTGTTGGTAAAAGTTGTCTTTTATTGCGTTTCTCTGATGGGTCTTTTACAACTAGTTTTATCACAACCATTGGCATTGATTTCAAAATAAGGACAATTGAGCTTGATGGAAAGCGAATCAAATTGCAAATATGGGACACAGCCGGTCAAGAGCGATTTCGAACTATCACAACTGCTTACTACCGTGGAGCCATGGGTATTTTACTTGTATATGACGTTACGGACGAGTCTTCTTTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCTGACAATGTTAACAAGATATTGGTGGGCAACAAAGCTGACATGGATGAAAGCAAACGGGCTGTGCCAACTTCTAAGGGCCAAGCGCTTGCAGATGAATATGGTATCAAGTTTTTTGAGACTAGTGCTAAAACAAATCTGAATGTGGAGGAGGTTTTCTTTTCAATAGCTCGGGACATCAAGCAAAGACTTGCAGATACTGACTCAAAATCTGAGCCCCAGACAATCAAGATTAACCAACCAGACCAGGGAGCAGGGGCTGCCCAGGCCGCCCAAAAATCTGCATGTTGTGGTTCTTAA
Protein sequence

>Msa1123780

MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS*