AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169920 MtrunA17_Chr7g0263071 100.000 216 0 0 1 216 1 216 7.42e-162 445
Msa1169920 MtrunA17_Chr1g0182321 94.907 216 11 0 1 216 1 216 7.40e-157 432
Msa1169920 MtrunA17_Chr1g0182301 94.444 216 12 0 1 216 1 216 4.68e-156 431
Msa1169920 MtrunA17_Chr1g0212521 94.634 205 11 0 11 215 11 215 8.55e-145 402
Msa1169920 MtrunA17_Chr4g0030911 95.122 205 9 1 11 215 11 214 7.16e-144 399
Msa1169920 MtrunA17_Chr2g0327911 77.315 216 45 3 1 215 1 213 2.60e-117 332
Msa1169920 MtrunA17_Chr7g0250531 61.058 208 70 4 11 216 4 202 2.87e-87 256
Msa1169920 MtrunA17_Chr4g0055651 59.135 208 74 4 11 216 4 202 4.67e-86 253
Msa1169920 MtrunA17_Chr8g0335471 59.809 209 72 4 11 216 4 203 1.63e-84 249
Msa1169920 MtrunA17_Chr2g0276931 55.288 208 81 4 11 215 5 203 8.75e-80 237
Msa1169920 MtrunA17_Chr6g0458081 47.368 209 103 4 12 214 3 210 1.16e-60 189
Msa1169920 MtrunA17_Chr2g0290891 46.890 209 103 3 12 213 3 210 8.42e-60 186
Msa1169920 MtrunA17_Chr3g0112681 45.327 214 104 4 11 216 8 216 1.47e-59 186
Msa1169920 MtrunA17_Chr4g0032201 42.991 214 116 3 7 216 4 215 3.37e-59 185
Msa1169920 MtrunA17_Chr2g0283131 44.495 218 108 3 7 216 5 217 1.28e-57 181
Msa1169920 MtrunA17_Chr4g0046261 44.954 218 107 5 7 216 5 217 3.93e-57 180
Msa1169920 MtrunA17_Chr2g0276941 43.128 211 114 2 11 216 11 220 4.31e-57 180
Msa1169920 MtrunA17_Chr4g0040781 45.413 218 106 5 7 216 5 217 1.33e-56 179
Msa1169920 MtrunA17_Chr1g0189361 42.991 214 107 4 13 214 12 222 8.04e-56 177
Msa1169920 MtrunA17_Chr2g0315551 43.721 215 114 3 7 216 5 217 1.50e-55 176
Msa1169920 MtrunA17_Chr1g0180291 48.309 207 96 7 12 214 11 210 1.01e-54 174
Msa1169920 MtrunA17_Chr3g0123821 42.453 212 108 4 13 214 14 221 1.82e-54 173
Msa1169920 MtrunA17_Chr7g0265001 45.673 208 101 5 12 214 13 213 2.24e-54 173
Msa1169920 MtrunA17_Chr8g0349711 47.312 186 91 3 14 195 5 187 2.59e-54 172
Msa1169920 MtrunA17_Chr8g0381841 43.396 212 111 4 13 216 15 225 4.00e-54 172
Msa1169920 MtrunA17_Chr3g0130271 44.712 208 104 5 11 214 8 208 1.89e-53 170
Msa1169920 MtrunA17_Chr8g0384311 44.393 214 105 7 6 214 4 208 3.78e-53 169
Msa1169920 MtrunA17_Chr8g0349681 42.995 207 115 2 9 213 378 583 5.28e-53 179
Msa1169920 MtrunA17_Chr8g0349681 45.763 177 91 2 12 184 172 347 4.92e-48 166
Msa1169920 MtrunA17_Chr8g0349681 49.045 157 79 1 14 170 12 167 5.17e-46 160
Msa1169920 MtrunA17_Chr2g0319951 49.123 171 86 1 7 177 5 174 5.46e-53 169
Msa1169920 MtrunA17_Chr1g0159481 45.411 207 103 6 11 213 13 213 1.59e-52 168
Msa1169920 MtrunA17_Chr1g0174281 41.589 214 111 4 13 215 13 223 1.85e-52 168
Msa1169920 MtrunA17_Chr2g0325091 42.991 214 108 4 11 216 7 214 1.90e-52 168
Msa1169920 MtrunA17_Chr1g0197331 42.857 217 115 6 1 214 1 211 7.26e-52 166
Msa1169920 MtrunA17_Chr7g0234201 41.951 205 113 3 14 214 12 214 7.28e-52 166
Msa1169920 MtrunA17_Chr8g0346421 46.667 165 87 1 13 177 24 187 7.12e-51 164
Msa1169920 MtrunA17_Chr8g0351861 42.647 204 113 2 13 213 14 216 1.41e-50 164
Msa1169920 MtrunA17_Chr6g0482721 41.262 206 116 2 13 214 10 214 5.69e-50 162
Msa1169920 MtrunA17_Chr7g0275991 40.099 202 115 2 7 203 12 212 1.30e-49 161
Msa1169920 MtrunA17_Chr7g0214241 39.130 207 119 4 14 214 14 219 3.22e-49 160
Msa1169920 MtrunA17_Chr8g0392931 44.076 211 104 4 13 214 12 217 1.73e-47 155
Msa1169920 MtrunA17_Chr7g0231131 45.455 165 89 1 13 177 13 176 1.92e-47 155
Msa1169920 MtrunA17_Chr3g0109721 38.191 199 111 4 17 214 12 199 1.12e-44 147
Msa1169920 MtrunA17_Chr1g0199331 44.242 165 90 2 16 179 32 195 1.18e-44 147
Msa1169920 MtrunA17_Chr8g0390561 39.698 199 109 4 17 215 11 198 1.30e-44 147
Msa1169920 MtrunA17_Chr5g0433561 36.869 198 115 3 17 214 12 199 9.44e-44 145
Msa1169920 MtrunA17_Chr8g0382221 38.191 199 110 3 17 205 11 206 9.92e-42 140
Msa1169920 MtrunA17_Chr4g0034871 39.901 203 108 7 5 198 2 199 7.12e-41 138
Msa1169920 MtrunA17_Chr5g0400131 36.364 209 127 3 5 213 3 205 1.08e-39 135
Msa1169920 MtrunA17_Chr3g0123971 42.405 158 90 1 17 174 11 167 3.35e-39 134
Msa1169920 MtrunA17_Chr4g0055081 40.000 170 97 2 5 174 3 167 1.36e-38 132
Msa1169920 MtrunA17_Chr2g0331691 37.379 206 115 6 15 214 10 207 7.70e-37 128
Msa1169920 MtrunA17_Chr6g0466301 40.120 167 94 3 15 175 8 174 2.97e-36 126
Msa1169920 MtrunA17_Chr6g0465491 40.120 167 94 3 15 175 8 174 2.97e-36 126
Msa1169920 MtrunA17_Chr8g0383261 37.853 177 104 2 15 185 12 188 6.01e-36 125
Msa1169920 MtrunA17_Chr4g0004661 37.864 206 114 6 15 214 64 261 6.88e-36 127
Msa1169920 MtrunA17_Chr1g0201121 35.176 199 121 3 15 205 8 206 1.53e-35 124
Msa1169920 MtrunA17_Chr6g0466161 34.444 180 112 3 32 205 7 186 8.29e-27 102
Msa1169920 MtrunA17_Chr6g0465471 33.889 180 113 3 32 205 7 186 4.53e-26 100
Msa1169920 MtrunA17_Chr1g0178291 41.358 162 87 3 18 179 431 584 1.34e-25 103
Msa1169920 MtrunA17_Chr2g0325101 32.934 167 99 5 15 170 6 170 1.87e-25 98.2
Msa1169920 MtrunA17_Chr4g0037021 32.979 188 113 6 15 191 6 191 2.74e-25 97.8
Msa1169920 MtrunA17_Chr3g0117931 32.335 167 100 5 15 170 8 172 1.52e-24 96.3
Msa1169920 MtrunA17_Chr3g0138121 30.286 175 117 4 3 177 2 171 2.46e-24 95.9
Msa1169920 MtrunA17_Chr3g0138111 30.286 175 117 4 3 177 2 171 2.98e-24 95.9
Msa1169920 MtrunA17_Chr3g0138101 30.286 175 117 4 3 177 2 171 3.08e-24 95.9
Msa1169920 MtrunA17_Chr8g0371501 32.335 167 100 6 15 170 6 170 3.62e-23 92.4
Msa1169920 MtrunA17_Chr6g0486041 31.138 167 102 5 15 170 6 170 4.78e-23 92.4
Msa1169920 MtrunA17_Chr5g0405791 32.335 167 100 6 15 170 6 170 6.90e-23 91.7
Msa1169920 MtrunA17_Chr4g0046211 34.677 124 78 3 15 137 6 127 2.58e-22 88.6
Msa1169920 MtrunA17_Chr6g0466431 35.789 95 52 1 15 109 8 93 6.20e-17 73.2
Msa1169920 MtrunA17_Chr6g0465611 35.789 95 52 1 15 109 8 93 6.20e-17 73.2
Msa1169920 MtrunA17_Chr5g0443631 25.466 161 111 3 16 170 105 262 9.23e-13 65.9
Msa1169920 MtrunA17_Chr5g0434561 30.488 164 95 6 16 170 20 173 6.59e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169920 AT3G53610.2 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa1169920 AT3G53610.3 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa1169920 AT3G53610.1 94.175 206 12 0 11 216 11 216 3.99e-146 405
Msa1169920 AT5G59840.1 95.146 206 10 0 11 216 11 216 6.76e-146 405
Msa1169920 AT3G46060.2 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa1169920 AT3G46060.3 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa1169920 AT3G46060.1 94.175 206 12 0 11 216 11 216 2.26e-145 404
Msa1169920 AT5G03520.1 86.916 214 27 1 1 214 1 213 6.44e-131 367
Msa1169920 AT3G09900.1 85.116 215 31 1 1 214 1 215 2.41e-128 361
Msa1169920 AT5G03520.2 86.061 165 22 1 50 214 40 203 8.03e-104 298
Msa1169920 AT1G02130.1 60.287 209 71 4 11 216 4 203 1.94e-88 259
Msa1169920 AT4G17530.1 59.135 208 74 4 11 216 4 202 1.05e-83 247
Msa1169920 AT5G47200.1 58.654 208 75 4 11 216 4 202 5.61e-83 245
Msa1169920 AT3G11730.1 56.938 209 78 4 11 215 4 204 1.03e-80 240
Msa1169920 AT4G17160.1 48.058 206 102 3 12 215 3 205 1.16e-64 199
Msa1169920 AT4G35860.1 48.571 210 101 4 12 215 3 211 2.34e-64 198
Msa1169920 AT4G17170.1 47.143 210 104 4 12 215 3 211 8.76e-62 192
Msa1169920 AT1G09630.1 44.860 214 113 2 7 216 4 216 4.54e-61 190
Msa1169920 AT3G46830.1 43.636 220 108 3 7 216 4 217 9.74e-58 182
Msa1169920 AT3G46830.2 43.636 220 108 3 7 216 4 217 9.74e-58 182
Msa1169920 AT4G18430.1 44.907 216 106 3 7 214 5 215 1.03e-57 182
Msa1169920 AT1G16920.1 45.581 215 105 4 7 214 5 214 2.66e-57 181
Msa1169920 AT1G07410.1 42.056 214 117 3 7 216 4 214 3.69e-57 180
Msa1169920 AT5G59150.1 42.326 215 118 3 7 216 4 217 4.61e-57 180
Msa1169920 AT5G60860.1 44.954 218 107 5 7 216 5 217 2.77e-56 178
Msa1169920 AT4G39990.1 44.340 212 107 4 13 216 15 223 1.17e-55 177
Msa1169920 AT3G15060.1 45.413 218 106 5 7 216 5 217 1.46e-55 176
Msa1169920 AT3G07410.1 42.995 207 112 3 13 214 10 215 1.55e-55 176
Msa1169920 AT5G45750.1 44.340 212 112 3 7 214 5 214 2.10e-55 176
Msa1169920 AT4G18800.1 44.076 211 112 3 7 214 5 212 1.19e-54 174
Msa1169920 AT5G47520.1 43.458 214 107 3 13 216 12 221 1.76e-54 174
Msa1169920 AT2G33870.1 43.379 219 110 4 7 216 5 218 2.07e-54 173
Msa1169920 AT2G43130.1 41.176 204 117 2 13 214 10 212 6.46e-54 172
Msa1169920 AT1G28550.1 43.779 217 112 4 7 216 5 218 1.26e-53 171
Msa1169920 AT1G05810.1 40.191 209 119 3 13 216 10 217 3.52e-53 170
Msa1169920 AT1G06400.1 43.256 215 110 4 7 214 5 214 8.08e-53 169
Msa1169920 AT1G05810.2 40.191 209 119 3 13 216 56 263 1.16e-52 170
Msa1169920 AT1G01200.1 47.337 169 89 0 13 181 26 194 1.22e-52 169
Msa1169920 AT5G47960.1 41.706 211 115 3 13 216 13 222 3.15e-52 168
Msa1169920 AT2G31680.1 47.879 165 85 1 13 177 10 173 3.51e-52 168
Msa1169920 AT5G03530.2 45.024 211 105 6 8 214 6 209 8.02e-52 166
Msa1169920 AT5G03530.1 45.024 211 105 6 8 214 6 209 8.02e-52 166
Msa1169920 AT1G43890.3 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa1169920 AT1G43890.1 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa1169920 AT1G43890.2 50.898 167 78 4 6 170 4 168 1.02e-51 166
Msa1169920 AT5G65270.1 40.376 213 117 4 13 216 15 226 1.28e-51 166
Msa1169920 AT1G73640.1 46.114 193 99 2 13 201 11 202 2.58e-51 166
Msa1169920 AT3G12160.1 41.315 213 110 4 13 215 13 220 5.13e-51 165
Msa1169920 AT1G18200.1 50.296 169 83 1 13 181 11 178 2.31e-50 163
Msa1169920 AT3G54840.1 44.382 178 94 3 3 179 24 197 2.41e-47 155
Msa1169920 AT3G54840.2 46.154 169 86 3 3 170 24 188 6.27e-47 153
Msa1169920 AT3G54840.3 45.399 163 87 2 18 179 2 163 2.65e-46 151
Msa1169920 AT4G35860.2 46.667 165 81 4 57 215 2 165 1.73e-44 146
Msa1169920 AT3G09910.5 45.312 192 101 4 8 197 6 195 2.91e-44 147
Msa1169920 AT3G09910.4 45.312 192 101 4 8 197 6 195 2.91e-44 147
Msa1169920 AT4G19640.1 38.191 199 113 4 17 215 12 200 4.47e-43 144
Msa1169920 AT3G09910.3 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa1169920 AT3G09910.1 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa1169920 AT3G09910.2 47.126 174 88 4 8 179 6 177 5.34e-42 141
Msa1169920 AT3G18820.1 39.109 202 112 5 5 200 2 198 3.06e-41 139
Msa1169920 AT4G39890.1 43.396 159 88 2 17 174 11 168 6.36e-41 139
Msa1169920 AT5G45130.1 36.683 199 116 5 17 215 12 200 9.86e-41 138
Msa1169920 AT2G22290.1 37.186 199 120 4 17 214 11 205 2.50e-40 137
Msa1169920 AT2G44610.1 36.667 210 127 3 5 214 3 206 5.42e-40 136
Msa1169920 AT5G10260.1 36.364 198 124 2 17 214 11 206 3.52e-39 134
Msa1169920 AT5G45130.2 36.041 197 116 5 19 215 22 208 6.41e-39 133
Msa1169920 AT1G22740.1 38.579 197 113 4 15 205 8 202 3.89e-38 131
Msa1169920 AT5G64990.1 37.374 198 121 3 17 213 9 204 8.97e-38 130
Msa1169920 AT1G52280.1 41.667 168 92 3 15 176 8 175 9.17e-38 130
Msa1169920 AT4G09720.1 38.191 199 114 4 15 205 8 205 1.10e-37 130
Msa1169920 AT5G59150.2 48.760 121 61 1 57 177 3 122 1.32e-37 129
Msa1169920 AT1G49300.2 36.058 208 120 6 5 204 2 204 1.35e-37 130
Msa1169920 AT1G49300.1 36.058 208 120 6 5 204 2 204 1.35e-37 130
Msa1169920 AT3G16100.1 37.864 206 113 4 15 214 8 204 4.87e-37 129
Msa1169920 AT4G09720.4 37.745 204 113 5 15 205 8 210 6.69e-36 125
Msa1169920 AT2G21880.1 36.058 208 111 4 15 205 9 211 1.06e-35 125
Msa1169920 AT5G64990.2 36.098 205 121 4 17 213 9 211 4.11e-35 124
Msa1169920 AT4G09720.3 35.238 210 116 4 15 205 8 216 1.60e-34 122
Msa1169920 AT5G39620.1 38.462 169 92 3 16 175 6 171 9.44e-34 120
Msa1169920 AT4G19640.2 38.843 121 74 0 17 137 12 132 7.21e-30 108
Msa1169920 AT4G19640.3 38.843 121 74 0 17 137 12 132 4.70e-29 107
Msa1169920 AT4G09720.6 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa1169920 AT4G09720.5 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa1169920 AT4G09720.2 38.235 170 96 4 44 205 3 171 1.18e-28 106
Msa1169920 AT2G21880.4 35.519 183 96 4 40 205 9 186 1.51e-27 103
Msa1169920 AT2G21880.3 35.519 183 96 4 40 205 9 186 1.51e-27 103
Msa1169920 AT4G35020.1 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa1169920 AT4G35020.2 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa1169920 AT4G35020.3 35.928 167 94 6 15 170 6 170 8.45e-27 102
Msa1169920 AT2G21880.2 32.212 208 111 5 15 205 9 203 7.35e-26 99.8
Msa1169920 AT2G44690.1 32.335 167 100 5 15 170 18 182 9.19e-26 99.8
Msa1169920 AT5G20010.1 28.972 214 142 6 3 212 2 209 1.21e-25 99.8
Msa1169920 AT3G48040.1 32.934 167 99 5 15 170 8 172 1.42e-25 99.4
Msa1169920 AT5G45970.1 31.138 167 102 5 15 170 6 170 3.74e-25 97.8
Msa1169920 AT5G62880.1 31.844 179 109 5 15 182 8 184 4.31e-25 98.2
Msa1169920 AT5G55080.1 32.716 162 105 3 16 177 14 171 7.69e-25 97.8
Msa1169920 AT3G51300.1 32.335 167 100 6 15 170 6 170 1.18e-24 96.7
Msa1169920 AT1G20090.1 34.132 167 97 6 15 170 5 169 1.51e-24 96.3
Msa1169920 AT1G75840.1 33.533 167 98 6 15 170 6 170 1.96e-24 95.9
Msa1169920 AT5G55190.1 30.286 175 117 4 3 177 2 171 3.82e-24 95.9
Msa1169920 AT5G20020.1 30.286 175 117 4 3 177 2 171 5.35e-24 95.5
Msa1169920 AT2G17800.2 32.934 167 99 6 15 170 6 170 5.78e-24 94.7
Msa1169920 AT2G17800.1 32.934 167 99 6 15 170 6 170 5.78e-24 94.7
Msa1169920 AT4G28950.1 31.515 165 102 5 15 170 6 168 1.75e-23 94.0
Msa1169920 AT4G35950.1 32.335 167 100 6 15 170 6 170 4.13e-23 92.4
Msa1169920 AT3G48040.2 32.075 159 95 5 15 162 8 164 5.88e-23 91.7
Msa1169920 AT5G62880.2 32.075 159 95 5 15 162 8 164 5.92e-22 89.4
Msa1169920 AT4G35020.4 36.207 116 71 3 15 129 6 119 8.89e-19 79.7
Msa1169920 AT4G35020.5 36.207 116 71 3 15 129 6 119 8.89e-19 79.7
Msa1169920 AT5G46025.1 35.294 102 64 2 77 177 6 106 1.55e-15 70.5
Msa1169920 AT3G51290.2 30.769 143 86 6 44 175 636 776 7.77e-13 67.4
Msa1169920 AT5G37680.1 27.215 158 108 3 16 170 20 173 4.17e-12 62.8
Msa1169920 AT2G15310.1 28.058 139 88 6 16 153 18 145 1.37e-11 62.0

Find 91 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACTCAGATTCAGTTATT+TGG 0.114215 7_4:+63025330 None:intergenic
CACGGTGTGGTTAACATTTA+TGG 0.143277 7_4:-63025358 Msa1169920:three_prime_UTR
CTCATTAAACTTCTCCTAAT+TGG 0.159282 7_4:-63027790 Msa1169920:CDS
GTTCCTGCTTTAAGCCTTAT+TGG 0.168990 7_4:+63025403 None:intergenic
AGCGAATCAAATTGCAAATA+TGG 0.180362 7_4:-63027429 Msa1169920:CDS
CACACATTCATTCTTGAGTT+TGG 0.211920 7_4:-63025275 Msa1169920:three_prime_UTR
TTAGGCTGTGCCAACTTCTA+AGG 0.253740 7_4:-63026163 Msa1169920:intron
CTGCATGTTGTGGTTCTTAA+TGG 0.257090 7_4:-63025640 Msa1169920:exon
TCAGCATTGATTTCAAAATA+AGG 0.261517 7_4:-63027471 Msa1169920:intron
GTTGGTTAATCTTGATTGTC+TGG 0.270643 7_4:+63025702 None:intergenic
TTCCTTTCTTGAAGCCAATA+AGG 0.303057 7_4:-63025417 Msa1169920:three_prime_UTR
TCACTAGTTGAGCGTTGAAT+TGG 0.317922 7_4:+63028115 None:intergenic
TGACAATGTTAACAAGATAT+TGG 0.321340 7_4:-63026326 Msa1169920:CDS
TCACTCAGATTCAGTTATTT+GGG 0.335202 7_4:+63025331 None:intergenic
TCATCTCATGTCCAGATATC+AGG 0.336735 7_4:-63026381 Msa1169920:intron
TGGTCAAGGAACTTATGATA+TGG 0.358979 7_4:-63025141 Msa1169920:three_prime_UTR
CAAGCGCTTGCAGATGAATA+TGG 0.360715 7_4:-63026138 Msa1169920:CDS
CACTAGTTGAGCGTTGAATT+GGG 0.367061 7_4:+63028116 None:intergenic
CCTGGGCAGCCCCTGCTCCC+TGG 0.373973 7_4:+63025675 None:intergenic
ACCACACCATACTTGGCTTA+TGG 0.376966 7_4:-63025382 Msa1169920:three_prime_UTR
TGGTACCGCTATCACCAATT+AGG 0.378492 7_4:+63027776 None:intergenic
AGCAGGAACCACACCATACT+TGG 0.381808 7_4:-63025389 Msa1169920:three_prime_UTR
GCAGCCCCTGCTCCCTGGTC+TGG 0.385231 7_4:+63025680 None:intergenic
AGGAAAGTTAAGATCTAAAC+AGG 0.396767 7_4:+63028034 None:intergenic
TTGGTTAATCTTGATTGTCT+GGG 0.400239 7_4:+63025703 None:intergenic
ATAAGGACAATTGAGCTTGA+TGG 0.403140 7_4:-63027454 Msa1169920:CDS
CCAGGGAGCAGGGGCTGCCC+AGG 0.406408 7_4:-63025675 Msa1169920:CDS
CATGTCCAGATATCAGGAAT+TGG 0.411917 7_4:-63026375 Msa1169920:intron
TCGGACACTCGCAGAGGAAT+AGG 0.419201 7_4:-63027869 Msa1169920:intron
GCGAATCAAATTGCAAATAT+GGG 0.419547 7_4:-63027428 Msa1169920:CDS
AGCCTTATTGGCTTCAAGAA+AGG 0.428738 7_4:+63025415 None:intergenic
CCGTGACCATAAGCCAAGTA+TGG 0.430523 7_4:+63025376 None:intergenic
ATCGTAATCAGCACGAGCTC+TGG 0.430906 7_4:+63027816 None:intergenic
CATAATTAATTTCCCAACAT+AGG 0.431227 7_4:+63025496 None:intergenic
CCCCTGCTCCCTGGTCTGGT+TGG 0.433352 7_4:+63025684 None:intergenic
CGATTTCGAACTATCACAAC+TGG 0.433779 7_4:-63027388 Msa1169920:intron
AGAGAAAAGGAAAGAAAAGA+GGG 0.437595 7_4:+63028069 None:intergenic
GAGAGAAAAGGAAAGAAAAG+AGG 0.440554 7_4:+63028068 None:intergenic
AGAATGAATGTGTGGATGTC+TGG 0.447349 7_4:+63025284 None:intergenic
TGCATGTTGTGGTTCTTAAT+GGG 0.450982 7_4:-63025639 Msa1169920:exon
GCCTATGTTTATTTCTGCTG+TGG 0.464643 7_4:-63025201 Msa1169920:three_prime_UTR
GAAAACGAGAAAGAGAGAAA+AGG 0.470733 7_4:+63028056 None:intergenic
GTTCTTAATGGGAAGCTTGA+GGG 0.477784 7_4:-63025628 Msa1169920:exon
TTTACTTGTATATGACGTTA+CGG 0.479177 7_4:-63026624 Msa1169920:CDS
TCATATCATATTAATTAAAA+CGG 0.479699 7_4:+63025092 None:intergenic
ATAATTAATTTCCCAACATA+GGG 0.480029 7_4:+63025497 None:intergenic
TTCCTCTTCCTCATCTTCAC+AGG 0.480337 7_4:-63028016 Msa1169920:intron
AGTTCGAAATCGCTCTTGAC+CGG 0.481009 7_4:+63027399 None:intergenic
AACCAACCAGACCAGGGAGC+AGG 0.489253 7_4:-63025686 Msa1169920:CDS
TGCTACTCATTGGGTTGGAA+TGG 0.494378 7_4:-63025528 Msa1169920:three_prime_UTR
ACAGTTGCTACTCATTGGGT+TGG 0.505420 7_4:-63025533 Msa1169920:three_prime_UTR
CATATTCATCTGCAAGCGCT+TGG 0.507439 7_4:+63026139 None:intergenic
CAAGATTAACCAACCAGACC+AGG 0.511143 7_4:-63025693 Msa1169920:CDS
TACCTGTGAAGATGAGGAAG+AGG 0.514002 7_4:+63028014 None:intergenic
AGCGCTTGGCCCTTAGAAGT+TGG 0.514221 7_4:+63026153 None:intergenic
AGCTTACTACCGTGGAGCCA+TGG 0.521985 7_4:-63026651 Msa1169920:CDS
TCTTGAGTTTGGAGTTTCAA+AGG 0.522996 7_4:-63025264 Msa1169920:three_prime_UTR
TAGGCTGTGCCAACTTCTAA+GGG 0.524551 7_4:-63026162 Msa1169920:CDS
AGAATGAAAAGAAGAATCAA+AGG 0.526724 7_4:-63028176 Msa1169920:five_prime_UTR
AACAAATCTGAATGTGGAGG+AGG 0.528959 7_4:-63026000 Msa1169920:CDS
CTGACATGGATGAAAGCAAA+CGG 0.531518 7_4:-63026291 Msa1169920:CDS
GCTTACTACCGTGGAGCCAT+GGG 0.548016 7_4:-63026650 Msa1169920:CDS
TGGAAATACCTGTGAAGATG+AGG 0.548935 7_4:+63028008 None:intergenic
TGACATGGATGAAAGCAAAC+GGG 0.551245 7_4:-63026290 Msa1169920:intron
AATGTTAACAAGATATTGGT+GGG 0.552268 7_4:-63026322 Msa1169920:CDS
TAATCAGCACGAGCTCTGGC+AGG 0.555758 7_4:+63027820 None:intergenic
CCATACTTGGCTTATGGTCA+CGG 0.557303 7_4:-63025376 Msa1169920:three_prime_UTR
ACCAACCAGACCAGGGAGCA+GGG 0.559075 7_4:-63025685 Msa1169920:CDS
GGTTCTTAATGGGAAGCTTG+AGG 0.564712 7_4:-63025629 Msa1169920:exon
TGGTTAATCTTGATTGTCTG+GGG 0.566856 7_4:+63025704 None:intergenic
CAATGTTAACAAGATATTGG+TGG 0.567581 7_4:-63026323 Msa1169920:CDS
ACTAGTTGAGCGTTGAATTG+GGG 0.584990 7_4:+63028117 None:intergenic
GAATGAAAAGAAGAATCAAA+GGG 0.587691 7_4:-63028175 Msa1169920:five_prime_UTR
AGTTTGGAGTTTCAAAGGCG+TGG 0.595003 7_4:-63025259 Msa1169920:three_prime_UTR
TCAGCACGAGCTCTGGCAGG+TGG 0.599524 7_4:+63027823 None:intergenic
GTAAAATACCCATGGCTCCA+CGG 0.601071 7_4:+63026642 None:intergenic
TTGCAAATATGGGACACAGC+CGG 0.602143 7_4:-63027418 Msa1169920:CDS
TGCTAAAACAAATCTGAATG+TGG 0.604329 7_4:-63026006 Msa1169920:CDS
AAGCCAATAAGGCTTAAAGC+AGG 0.605417 7_4:-63025406 Msa1169920:three_prime_UTR
CTTCTCCTAATTGGTGATAG+CGG 0.620219 7_4:-63027781 Msa1169920:intron
CCAACCAGACCAGGGAGCAG+GGG 0.621818 7_4:-63025684 Msa1169920:CDS
GGTGGGCAACAAAGCTGACA+TGG 0.624736 7_4:-63026305 Msa1169920:CDS
AGATACTGACTCAAAATCTG+AGG 0.634590 7_4:-63025937 Msa1169920:intron
ATATACAAGTAAAATACCCA+TGG 0.634609 7_4:+63026634 None:intergenic
TAAAACAAATCTGAATGTGG+AGG 0.641771 7_4:-63026003 Msa1169920:CDS
ACCACAGCAGAAATAAACAT+AGG 0.642974 7_4:+63025200 None:intergenic
ACCATAAGCCAAGTATGGTG+TGG 0.653928 7_4:+63025381 None:intergenic
CAAACTCAAGAATGAATGTG+TGG 0.658578 7_4:+63025276 None:intergenic
CTTGGCTTATGGTCACGGTG+TGG 0.658669 7_4:-63025371 Msa1169920:three_prime_UTR
AAGATTAACCAACCAGACCA+GGG 0.666777 7_4:-63025692 Msa1169920:CDS
GTGGATGTCTGGCATCAATG+TGG 0.721252 7_4:+63025295 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAAAAAAAAGTC+GGG + chr7_4:63027387-63027406 None:intergenic 10.0%
!! GTTAAAAAAAAAAAAAAAGT+CGG + chr7_4:63027388-63027407 None:intergenic 10.0%
!! TCATATCATATTAATTAAAA+CGG + chr7_4:63028170-63028189 None:intergenic 10.0%
!! GATTGTAATTAATTAATGAT+CGG - chr7_4:63025371-63025390 Msa1169920:three_prime_UTR 15.0%
!! TAATATTACAATAACAACAA+AGG + chr7_4:63026478-63026497 None:intergenic 15.0%
!! ATTTACATATACAAAATCAT+AGG + chr7_4:63026551-63026570 None:intergenic 15.0%
!! AAAGATGCAATTATAAAAAA+GGG + chr7_4:63027410-63027429 None:intergenic 15.0%
!! CCAAACATAGAAAATAAAAA+TGG + chr7_4:63025506-63025525 None:intergenic 20.0%
!!! CCATTTTTATTTTCTATGTT+TGG - chr7_4:63025503-63025522 Msa1169920:three_prime_UTR 20.0%
!!! TTATTTTCTATGTTTGGTAA+TGG - chr7_4:63025509-63025528 Msa1169920:three_prime_UTR 20.0%
!!! GATTATGCTATTTTTCATAT+TGG - chr7_4:63025606-63025625 Msa1169920:three_prime_UTR 20.0%
!! GAATTTAAGGATAATAAAAG+AGG + chr7_4:63026721-63026740 None:intergenic 20.0%
!! TACGAAGATATTACAATTTA+AGG + chr7_4:63026750-63026769 None:intergenic 20.0%
!!! TTTTATGTACTTATATGCAT+TGG - chr7_4:63027030-63027049 Msa1169920:intron 20.0%
!! TTTATGTACTTATATGCATT+GGG - chr7_4:63027031-63027050 Msa1169920:intron 20.0%
!! AATCAATGATAACTAGTAAA+AGG + chr7_4:63027360-63027379 None:intergenic 20.0%
!! GAAAGATGCAATTATAAAAA+AGG + chr7_4:63027411-63027430 None:intergenic 20.0%
!!! TTTTATAATTGCATCTTTCA+CGG - chr7_4:63027412-63027431 Msa1169920:CDS 20.0%
!! ATAATTAATTTCCCAACATA+GGG + chr7_4:63027765-63027784 None:intergenic 20.0%
!!! AACTCTTAATTTTGTCATTT+TGG + chr7_4:63028035-63028054 None:intergenic 20.0%
! AGAATGAAAAGAAGAATCAA+AGG - chr7_4:63025083-63025102 Msa1169920:three_prime_UTR 25.0%
! GAATGAAAAGAAGAATCAAA+GGG - chr7_4:63025084-63025103 Msa1169920:three_prime_UTR 25.0%
! TCAATAAATGAAGAGAAAAG+TGG + chr7_4:63025274-63025293 None:intergenic 25.0%
! TTGTGCAATCATGTAATATT+TGG - chr7_4:63025716-63025735 Msa1169920:intron 25.0%
! GACATCACAAAAGAATAAAA+CGG + chr7_4:63025744-63025763 None:intergenic 25.0%
!!! TCAGCATTGATTTCAAAATA+AGG - chr7_4:63025788-63025807 Msa1169920:intron 25.0%
! AACATAGTGTAAAACATTAC+AGG + chr7_4:63025941-63025960 None:intergenic 25.0%
!! GTAATGTTTTACACTATGTT+TGG - chr7_4:63025941-63025960 Msa1169920:CDS 25.0%
! TATTAGAGAAACTTCTTTCA+TGG - chr7_4:63026371-63026390 Msa1169920:intron 25.0%
! ATATACAAGTAAAATACCCA+TGG + chr7_4:63026628-63026647 None:intergenic 25.0%
! TTTACTTGTATATGACGTTA+CGG - chr7_4:63026635-63026654 Msa1169920:CDS 25.0%
! TAAGGATAATAAAAGAGGAA+TGG + chr7_4:63026716-63026735 None:intergenic 25.0%
! TTTAAGGAAACACGAATTTA+AGG + chr7_4:63026734-63026753 None:intergenic 25.0%
! TAATTGTGTTCACTGTATAA+TGG + chr7_4:63026779-63026798 None:intergenic 25.0%
! TGACAATGTTAACAAGATAT+TGG - chr7_4:63026933-63026952 Msa1169920:intron 25.0%
! AATGTTAACAAGATATTGGT+GGG - chr7_4:63026937-63026956 Msa1169920:intron 25.0%
!!! CAAAATCTGAGGTTTTATTT+TGG - chr7_4:63027333-63027352 Msa1169920:intron 25.0%
!! GAGTGATTTTTGTTAAACTT+AGG + chr7_4:63027478-63027497 None:intergenic 25.0%
! CATAATTAATTTCCCAACAT+AGG + chr7_4:63027766-63027785 None:intergenic 25.0%
!! AAACTGAGAAATAACTTTTG+TGG - chr7_4:63028098-63028117 Msa1169920:five_prime_UTR 25.0%
AGAGAAAAGGAAAGAAAAGA+GGG + chr7_4:63025193-63025212 None:intergenic 30.0%
AGGAAAGTTAAGATCTAAAC+AGG + chr7_4:63025228-63025247 None:intergenic 30.0%
!!! ATAGGTTTTGTTTGTTTCGA+TGG - chr7_4:63025408-63025427 Msa1169920:three_prime_UTR 30.0%
CTCATTAAACTTCTCCTAAT+TGG - chr7_4:63025469-63025488 Msa1169920:three_prime_UTR 30.0%
!! GTTTGATTTTGTGAAAGCTA+CGG + chr7_4:63025564-63025583 None:intergenic 30.0%
CAAACAAGTACTTAGTACTT+TGG - chr7_4:63025579-63025598 Msa1169920:three_prime_UTR 30.0%
!!! ATGCTATTTTTCATATTGGC+AGG - chr7_4:63025610-63025629 Msa1169920:three_prime_UTR 30.0%
! TTTTATTGCGTTTCTCTGAT+GGG - chr7_4:63025650-63025669 Msa1169920:CDS 30.0%
!!! ACTAGTTTTATCACAACCAT+TGG - chr7_4:63025682-63025701 Msa1169920:CDS 30.0%
!!! CTAGTTTTATCACAACCATT+GGG - chr7_4:63025683-63025702 Msa1169920:CDS 30.0%
AGCGAATCAAATTGCAAATA+TGG - chr7_4:63025830-63025849 Msa1169920:intron 30.0%
GCGAATCAAATTGCAAATAT+GGG - chr7_4:63025831-63025850 Msa1169920:intron 30.0%
!! TTCTAGCTTCACAAAAATCA+TGG + chr7_4:63026010-63026029 None:intergenic 30.0%
! ATTTTTGTGAAGCTAGAAGT+TGG - chr7_4:63026012-63026031 Msa1169920:intron 30.0%
! ACACAAATTCGTCCATTTTA+TGG - chr7_4:63026048-63026067 Msa1169920:intron 30.0%
! CACAAATTCGTCCATTTTAT+GGG - chr7_4:63026049-63026068 Msa1169920:intron 30.0%
TGTTTAACGTAAGAGAGAAT+GGG + chr7_4:63026693-63026712 None:intergenic 30.0%
CAATGTTAACAAGATATTGG+TGG - chr7_4:63026936-63026955 Msa1169920:intron 30.0%
TCATTCTCATTCATACTTGT+TGG - chr7_4:63027003-63027022 Msa1169920:intron 30.0%
TGCTAAAACAAATCTGAATG+TGG - chr7_4:63027253-63027272 Msa1169920:intron 30.0%
TAAAACAAATCTGAATGTGG+AGG - chr7_4:63027256-63027275 Msa1169920:intron 30.0%
! AGGTTTTCTTTTCAATAGCT+CGG - chr7_4:63027279-63027298 Msa1169920:intron 30.0%
TTTGTTAAACTTAGGATGCA+AGG + chr7_4:63027470-63027489 None:intergenic 30.0%
GTTTAACAAAAATCACTCTC+CGG - chr7_4:63027480-63027499 Msa1169920:intron 30.0%
TTTAACAAAAATCACTCTCC+GGG - chr7_4:63027481-63027500 Msa1169920:intron 30.0%
ACAAAATGGAAAACTTAGCA+TGG + chr7_4:63027526-63027545 None:intergenic 30.0%
TTGGTTAATCTTGATTGTCT+GGG + chr7_4:63027559-63027578 None:intergenic 30.0%
! TTTTACAGTTGCTACTCATT+GGG - chr7_4:63027722-63027741 Msa1169920:intron 30.0%
TCACTCAGATTCAGTTATTT+GGG + chr7_4:63027931-63027950 None:intergenic 30.0%
! AGAAATAACTTTTGTGGTCA+AGG - chr7_4:63028104-63028123 Msa1169920:five_prime_UTR 30.0%
GAGAGAAAAGGAAAGAAAAG+AGG + chr7_4:63025194-63025213 None:intergenic 35.0%
GAAAACGAGAAAGAGAGAAA+AGG + chr7_4:63025206-63025225 None:intergenic 35.0%
! TTTTTCATATTGGCAGGTGT+TGG - chr7_4:63025616-63025635 Msa1169920:three_prime_UTR 35.0%
! CTTTTATTGCGTTTCTCTGA+TGG - chr7_4:63025649-63025668 Msa1169920:CDS 35.0%
! TTTTATCACAACCATTGGGT+AGG - chr7_4:63025687-63025706 Msa1169920:CDS 35.0%
ATAAGGACAATTGAGCTTGA+TGG - chr7_4:63025805-63025824 Msa1169920:intron 35.0%
ATCCAAACAAGCCCATAAAA+TGG + chr7_4:63026063-63026082 None:intergenic 35.0%
CGCTTATATAAGCTTGCATA+AGG - chr7_4:63026126-63026145 Msa1169920:CDS 35.0%
! TGGTTTGAGTTTCCATTTAG+CGG - chr7_4:63026391-63026410 Msa1169920:intron 35.0%
! ATGTAACTGATTCCACCTAA+TGG - chr7_4:63026446-63026465 Msa1169920:intron 35.0%
GTTTAACGTAAGAGAGAATG+GGG + chr7_4:63026692-63026711 None:intergenic 35.0%
GTGTTTAACGTAAGAGAGAA+TGG + chr7_4:63026694-63026713 None:intergenic 35.0%
!! AAGCATTGAAAGCCAATTGT+CGG + chr7_4:63026816-63026835 None:intergenic 35.0%
AAGCGCTATTACATGACAAT+AGG - chr7_4:63026848-63026867 Msa1169920:intron 35.0%
AGTATGAATGAGAATGAGAG+AGG + chr7_4:63027000-63027019 None:intergenic 35.0%
TATCCATCAATGTTCCCTTT+AGG - chr7_4:63027078-63027097 Msa1169920:intron 35.0%
!!! TTTGTTTTAGCACTCTGTAC+AGG + chr7_4:63027245-63027264 None:intergenic 35.0%
! GGTTTTCTTTTCAATAGCTC+GGG - chr7_4:63027280-63027299 Msa1169920:intron 35.0%
!! AGATACTGACTCAAAATCTG+AGG - chr7_4:63027322-63027341 Msa1169920:intron 35.0%
TGGTTAATCTTGATTGTCTG+GGG + chr7_4:63027558-63027577 None:intergenic 35.0%
GTTGGTTAATCTTGATTGTC+TGG + chr7_4:63027560-63027579 None:intergenic 35.0%
! ACCACAACATGCAGATTTTT+GGG + chr7_4:63027613-63027632 None:intergenic 35.0%
! AACCACAACATGCAGATTTT+TGG + chr7_4:63027614-63027633 None:intergenic 35.0%
TGCATGTTGTGGTTCTTAAT+GGG - chr7_4:63027620-63027639 Msa1169920:CDS 35.0%
! GTTTTACAGTTGCTACTCAT+TGG - chr7_4:63027721-63027740 Msa1169920:intron 35.0%
! ATGGTAGATTTTCCCTATGT+TGG - chr7_4:63027750-63027769 Msa1169920:intron 35.0%
! TGGTAGATTTTCCCTATGTT+GGG - chr7_4:63027751-63027770 Msa1169920:intron 35.0%
!! CTTAAACCCACTCTTTTTCA+GGG - chr7_4:63027801-63027820 Msa1169920:CDS 35.0%
!!! TTAAACCCACTCTTTTTCAG+GGG - chr7_4:63027802-63027821 Msa1169920:CDS 35.0%
TTCCTTTCTTGAAGCCAATA+AGG - chr7_4:63027842-63027861 Msa1169920:exon 35.0%
GTCACTCAGATTCAGTTATT+TGG + chr7_4:63027932-63027951 None:intergenic 35.0%
CAAACTCAAGAATGAATGTG+TGG + chr7_4:63027986-63028005 None:intergenic 35.0%
CACACATTCATTCTTGAGTT+TGG - chr7_4:63027984-63028003 Msa1169920:intron 35.0%
! TCTTGAGTTTGGAGTTTCAA+AGG - chr7_4:63027995-63028014 Msa1169920:intron 35.0%
ACCACAGCAGAAATAAACAT+AGG + chr7_4:63028062-63028081 None:intergenic 35.0%
TGGTCAAGGAACTTATGATA+TGG - chr7_4:63028118-63028137 Msa1169920:five_prime_UTR 35.0%
! GGAACATTTTCTGCATGTTT+AGG + chr7_4:63028149-63028168 None:intergenic 35.0%
!! ACTAGTTGAGCGTTGAATTG+GGG + chr7_4:63025145-63025164 None:intergenic 40.0%
!! CACTAGTTGAGCGTTGAATT+GGG + chr7_4:63025146-63025165 None:intergenic 40.0%
!! TCACTAGTTGAGCGTTGAAT+TGG + chr7_4:63025147-63025166 None:intergenic 40.0%
TGGAAATACCTGTGAAGATG+AGG + chr7_4:63025254-63025273 None:intergenic 40.0%
! CTTCTCCTAATTGGTGATAG+CGG - chr7_4:63025478-63025497 Msa1169920:three_prime_UTR 40.0%
!! GTTTGGTAATGGTATCACTC+TGG - chr7_4:63025520-63025539 Msa1169920:three_prime_UTR 40.0%
TTTGTGAAAGCTACGGAGTA+TGG + chr7_4:63025557-63025576 None:intergenic 40.0%
CACAAAAGAAACCTACCCAA+TGG + chr7_4:63025701-63025720 None:intergenic 40.0%
CGATTTCGAACTATCACAAC+TGG - chr7_4:63025871-63025890 Msa1169920:intron 40.0%
GAACATTAGGACGTGAGAAA+TGG + chr7_4:63025982-63026001 None:intergenic 40.0%
AATCATGGCCAGAGAACATT+AGG + chr7_4:63025995-63026014 None:intergenic 40.0%
!! GTCCATTTTATGGGCTTGTT+TGG - chr7_4:63026058-63026077 Msa1169920:intron 40.0%
GTCTAGTCACATGCTTAAAG+TGG + chr7_4:63026295-63026314 None:intergenic 40.0%
! GGTTTGAGTTTCCATTTAGC+GGG - chr7_4:63026392-63026411 Msa1169920:intron 40.0%
! GTTTGAGTTTCCATTTAGCG+GGG - chr7_4:63026393-63026412 Msa1169920:intron 40.0%
! TTTGAGTTTCCATTTAGCGG+GGG - chr7_4:63026394-63026413 Msa1169920:intron 40.0%
CTGATTCCACCTAATGGAAA+AGG - chr7_4:63026452-63026471 Msa1169920:intron 40.0%
! CAACAAAGGCCTTTTCCATT+AGG + chr7_4:63026464-63026483 None:intergenic 40.0%
TAACAGTTCAACCCGACAAT+TGG - chr7_4:63026801-63026820 Msa1169920:intron 40.0%
! AGCATTGAAAGCCAATTGTC+GGG + chr7_4:63026815-63026834 None:intergenic 40.0%
TCATCTCATGTCCAGATATC+AGG - chr7_4:63026878-63026897 Msa1169920:intron 40.0%
CATGTCCAGATATCAGGAAT+TGG - chr7_4:63026884-63026903 Msa1169920:intron 40.0%
CGAATCCAATTCCTGATATC+TGG + chr7_4:63026892-63026911 None:intergenic 40.0%
CTGACATGGATGAAAGCAAA+CGG - chr7_4:63026968-63026987 Msa1169920:intron 40.0%
TGACATGGATGAAAGCAAAC+GGG - chr7_4:63026969-63026988 Msa1169920:intron 40.0%
AACAAATCTGAATGTGGAGG+AGG - chr7_4:63027259-63027278 Msa1169920:intron 40.0%
ACTGATGAGAGAATTCAACC+CGG + chr7_4:63027502-63027521 None:intergenic 40.0%
AAGATTAACCAACCAGACCA+GGG - chr7_4:63027567-63027586 Msa1169920:intron 40.0%
!! ACAACATGCAGATTTTTGGG+CGG + chr7_4:63027610-63027629 None:intergenic 40.0%
CTGCATGTTGTGGTTCTTAA+TGG - chr7_4:63027619-63027638 Msa1169920:CDS 40.0%
GTTCTTAATGGGAAGCTTGA+GGG - chr7_4:63027631-63027650 Msa1169920:intron 40.0%
! GCTTAAACCCACTCTTTTTC+AGG - chr7_4:63027800-63027819 Msa1169920:CDS 40.0%
!! AGCCTTATTGGCTTCAAGAA+AGG + chr7_4:63027847-63027866 None:intergenic 40.0%
AAGCCAATAAGGCTTAAAGC+AGG - chr7_4:63027853-63027872 Msa1169920:exon 40.0%
! GTTCCTGCTTTAAGCCTTAT+TGG + chr7_4:63027859-63027878 None:intergenic 40.0%
CACGGTGTGGTTAACATTTA+TGG - chr7_4:63027901-63027920 Msa1169920:intron 40.0%
AGAATGAATGTGTGGATGTC+TGG + chr7_4:63027978-63027997 None:intergenic 40.0%
!! GCCTATGTTTATTTCTGCTG+TGG - chr7_4:63028058-63028077 Msa1169920:five_prime_UTR 40.0%
TTCCTCTTCCTCATCTTCAC+AGG - chr7_4:63025243-63025262 Msa1169920:three_prime_UTR 45.0%
TACCTGTGAAGATGAGGAAG+AGG + chr7_4:63025248-63025267 None:intergenic 45.0%
TGGTACCGCTATCACCAATT+AGG + chr7_4:63025486-63025505 None:intergenic 45.0%
TTGCAAATATGGGACACAGC+CGG - chr7_4:63025841-63025860 Msa1169920:intron 45.0%
AGTTCGAAATCGCTCTTGAC+CGG + chr7_4:63025863-63025882 None:intergenic 45.0%
TCTCACGTCCTAATGTTCTC+TGG - chr7_4:63025984-63026003 Msa1169920:CDS 45.0%
TTGAGTTTCCATTTAGCGGG+GGG - chr7_4:63026395-63026414 Msa1169920:intron 45.0%
! CAAAGGCCTTTTCCATTAGG+TGG + chr7_4:63026461-63026480 None:intergenic 45.0%
CGGTAGTAAGCTGCAAAAGA+AGG + chr7_4:63026600-63026619 None:intergenic 45.0%
! TCTTTTGCAGCTTACTACCG+TGG - chr7_4:63026600-63026619 Msa1169920:intron 45.0%
GTAAAATACCCATGGCTCCA+CGG + chr7_4:63026620-63026639 None:intergenic 45.0%
CAGCCTAAAGGGAACATTGA+TGG + chr7_4:63027084-63027103 None:intergenic 45.0%
AGAAGTTGGCACAGCCTAAA+GGG + chr7_4:63027095-63027114 None:intergenic 45.0%
TAGAAGTTGGCACAGCCTAA+AGG + chr7_4:63027096-63027115 None:intergenic 45.0%
TTAGGCTGTGCCAACTTCTA+AGG - chr7_4:63027096-63027115 Msa1169920:intron 45.0%
TAGGCTGTGCCAACTTCTAA+GGG - chr7_4:63027097-63027116 Msa1169920:intron 45.0%
CATATTCATCTGCAAGCGCT+TGG + chr7_4:63027123-63027142 None:intergenic 45.0%
CAAGCGCTTGCAGATGAATA+TGG - chr7_4:63027121-63027140 Msa1169920:intron 45.0%
TGGGGCTGCAAAGAACAAAA+TGG + chr7_4:63027540-63027559 None:intergenic 45.0%
CAAGATTAACCAACCAGACC+AGG - chr7_4:63027566-63027585 Msa1169920:intron 45.0%
GCCCAAAAATCTGCATGTTG+TGG - chr7_4:63027609-63027628 Msa1169920:CDS 45.0%
GGTTCTTAATGGGAAGCTTG+AGG - chr7_4:63027630-63027649 Msa1169920:CDS 45.0%
ACAGTTGCTACTCATTGGGT+TGG - chr7_4:63027726-63027745 Msa1169920:intron 45.0%
!! TGCTACTCATTGGGTTGGAA+TGG - chr7_4:63027731-63027750 Msa1169920:intron 45.0%
ACCACACCATACTTGGCTTA+TGG - chr7_4:63027877-63027896 Msa1169920:intron 45.0%
ACCATAAGCCAAGTATGGTG+TGG + chr7_4:63027881-63027900 None:intergenic 45.0%
CCATACTTGGCTTATGGTCA+CGG - chr7_4:63027883-63027902 Msa1169920:intron 45.0%
! AGTTTGGAGTTTCAAAGGCG+TGG - chr7_4:63028000-63028019 Msa1169920:intron 45.0%
!! TATCTAATAATAATAATAAT+TGG + chr7_4:63025312-63025331 None:intergenic 5.0%
TAATGATCGGACACTCGCAG+AGG - chr7_4:63025384-63025403 Msa1169920:three_prime_UTR 50.0%
ATCGTAATCAGCACGAGCTC+TGG + chr7_4:63025446-63025465 None:intergenic 50.0%
CCAAGCCCCTGAAAAAGAGT+GGG + chr7_4:63027810-63027829 None:intergenic 50.0%
ACCAAGCCCCTGAAAAAGAG+TGG + chr7_4:63027811-63027830 None:intergenic 50.0%
AGCAGGAACCACACCATACT+TGG - chr7_4:63027870-63027889 Msa1169920:intron 50.0%
CCGTGACCATAAGCCAAGTA+TGG + chr7_4:63027886-63027905 None:intergenic 50.0%
GTGGATGTCTGGCATCAATG+TGG + chr7_4:63027967-63027986 None:intergenic 50.0%
TCGGACACTCGCAGAGGAAT+AGG - chr7_4:63025390-63025409 Msa1169920:three_prime_UTR 55.0%
! TAATCAGCACGAGCTCTGGC+AGG + chr7_4:63025442-63025461 None:intergenic 55.0%
ATGTCTTGCCCCCCGCTAAA+TGG + chr7_4:63026406-63026425 None:intergenic 55.0%
AGCTTACTACCGTGGAGCCA+TGG - chr7_4:63026608-63026627 Msa1169920:CDS 55.0%
GCTTACTACCGTGGAGCCAT+GGG - chr7_4:63026609-63026628 Msa1169920:CDS 55.0%
GGTGGGCAACAAAGCTGACA+TGG - chr7_4:63026954-63026973 Msa1169920:intron 55.0%
AGCGCTTGGCCCTTAGAAGT+TGG + chr7_4:63027109-63027128 None:intergenic 55.0%
!! TGCAGATTTTTGGGCGGCCT+GGG + chr7_4:63027604-63027623 None:intergenic 55.0%
!! ATGCAGATTTTTGGGCGGCC+TGG + chr7_4:63027605-63027624 None:intergenic 55.0%
!!! CCCACTCTTTTTCAGGGGCT+TGG - chr7_4:63027807-63027826 Msa1169920:CDS 55.0%
CTTGGCTTATGGTCACGGTG+TGG - chr7_4:63027888-63027907 Msa1169920:intron 55.0%
AACCAACCAGACCAGGGAGC+AGG - chr7_4:63027573-63027592 Msa1169920:intron 60.0%
ACCAACCAGACCAGGGAGCA+GGG - chr7_4:63027574-63027593 Msa1169920:intron 60.0%
! TCAGCACGAGCTCTGGCAGG+TGG + chr7_4:63025439-63025458 None:intergenic 65.0%
CCAACCAGACCAGGGAGCAG+GGG - chr7_4:63027575-63027594 Msa1169920:intron 65.0%
CCCCTGCTCCCTGGTCTGGT+TGG + chr7_4:63027578-63027597 None:intergenic 70.0%
GCAGCCCCTGCTCCCTGGTC+TGG + chr7_4:63027582-63027601 None:intergenic 75.0%
! CCTGGGCAGCCCCTGCTCCC+TGG + chr7_4:63027587-63027606 None:intergenic 80.0%
! CCAGGGAGCAGGGGCTGCCC+AGG - chr7_4:63027584-63027603 Msa1169920:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 63025077 63028204 63025077 ID=Msa1169920;Name=Msa1169920
chr7_4 mRNA 63025077 63028204 63025077 ID=Msa1169920-mRNA-1;Parent=Msa1169920;Name=Msa1169920-mRNA-1;_AED=0.13;_eAED=0.13;_QI=211|1|1|1|0.87|0.77|9|566|216
chr7_4 exon 63025077 63025726 63025077 ID=Msa1169920-mRNA-1:exon:20121;Parent=Msa1169920-mRNA-1
chr7_4 exon 63025938 63026030 63025938 ID=Msa1169920-mRNA-1:exon:20120;Parent=Msa1169920-mRNA-1
chr7_4 exon 63026119 63026181 63026119 ID=Msa1169920-mRNA-1:exon:20119;Parent=Msa1169920-mRNA-1
chr7_4 exon 63026291 63026388 63026291 ID=Msa1169920-mRNA-1:exon:20118;Parent=Msa1169920-mRNA-1
chr7_4 exon 63026606 63026671 63026606 ID=Msa1169920-mRNA-1:exon:20117;Parent=Msa1169920-mRNA-1
chr7_4 exon 63027389 63027489 63027389 ID=Msa1169920-mRNA-1:exon:20116;Parent=Msa1169920-mRNA-1
chr7_4 exon 63027577 63027649 63027577 ID=Msa1169920-mRNA-1:exon:20115;Parent=Msa1169920-mRNA-1
chr7_4 exon 63027782 63027877 63027782 ID=Msa1169920-mRNA-1:exon:20114;Parent=Msa1169920-mRNA-1
chr7_4 exon 63028017 63028204 63028017 ID=Msa1169920-mRNA-1:exon:20113;Parent=Msa1169920-mRNA-1
chr7_4 five_prime_UTR 63028017 63028204 63028017 ID=Msa1169920-mRNA-1:five_prime_utr;Parent=Msa1169920-mRNA-1
chr7_4 five_prime_UTR 63027855 63027877 63027855 ID=Msa1169920-mRNA-1:five_prime_utr;Parent=Msa1169920-mRNA-1
chr7_4 CDS 63027782 63027854 63027782 ID=Msa1169920-mRNA-1:cds;Parent=Msa1169920-mRNA-1
chr7_4 CDS 63027577 63027649 63027577 ID=Msa1169920-mRNA-1:cds;Parent=Msa1169920-mRNA-1
chr7_4 CDS 63027389 63027489 63027389 ID=Msa1169920-mRNA-1:cds;Parent=Msa1169920-mRNA-1
chr7_4 CDS 63026606 63026671 63026606 ID=Msa1169920-mRNA-1:cds;Parent=Msa1169920-mRNA-1
chr7_4 CDS 63026291 63026388 63026291 ID=Msa1169920-mRNA-1:cds;Parent=Msa1169920-mRNA-1
chr7_4 CDS 63026119 63026181 63026119 ID=Msa1169920-mRNA-1:cds;Parent=Msa1169920-mRNA-1
chr7_4 CDS 63025938 63026030 63025938 ID=Msa1169920-mRNA-1:cds;Parent=Msa1169920-mRNA-1
chr7_4 CDS 63025643 63025726 63025643 ID=Msa1169920-mRNA-1:cds;Parent=Msa1169920-mRNA-1
chr7_4 three_prime_UTR 63025077 63025642 63025077 ID=Msa1169920-mRNA-1:three_prime_utr;Parent=Msa1169920-mRNA-1
Gene Sequence

>Msa1169920

ATGGCTGCTCCACCTGCCAGAGCTCGTGCTGATTACGATTATCTCATTAAACTTCTCCTAATTGGTGATAGCGGTGTTGGTAAAAGTTGTCTTTTATTGCGTTTCTCTGATGGGTCTTTTACAACTAGTTTTATCACAACCATTGGCATTGATTTCAAAATAAGGACAATTGAGCTTGATGGAAAGCGAATCAAATTGCAAATATGGGACACAGCCGGTCAAGAGCGATTTCGAACTATCACAACTGCTTACTACCGTGGAGCCATGGGTATTTTACTTGTATATGACGTTACGGACGAGTCTTCTTTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCTGACAATGTTAACAAGATATTGGTGGGCAACAAAGCTGACATGGATGAAAGCAAACGGGCTGTGCCAACTTCTAAGGGCCAAGCGCTTGCAGATGAATATGGTATCAAGTTTTTTGAGACTAGTGCTAAAACAAATCTGAATGTGGAGGAGGTTTTCTTTTCAATAGCTCGGGACATCAAGCAAAGACTTGCAGATACTGACTCAAAATCTGAGCCCCAGACAATCAAGATTAACCAACCAGACCAGGGAGCAGGGGCTGCCCAGGCCGCCCAAAAATCTGCATGTTGTGGTTCTTAA
Protein sequence

>Msa1169920

MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS*