Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442650 | XP_003598024.2 | 99.130 | 345 | 3 | 0 | 1 | 345 | 1 | 345 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442650 | sp|Q940H7|MES12_ARATH | 73.219 | 351 | 84 | 4 | 1 | 344 | 1 | 348 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442650 | G7IYE3 | 99.130 | 345 | 3 | 0 | 1 | 345 | 1 | 345 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085720 | Msa0442650 | 0.813123 | 3.002029e-51 | -8.615850e-47 |
| Msa0140170 | Msa0442650 | 0.831593 | 1.528822e-55 | -8.615850e-47 |
| Msa0175050 | Msa0442650 | 0.815196 | 1.046518e-51 | -8.615850e-47 |
| Msa0431020 | Msa0442650 | 0.816427 | 5.562594e-52 | -8.615850e-47 |
| Msa0442650 | Msa0519390 | 0.823394 | 1.418361e-53 | -8.615850e-47 |
| Msa0442650 | Msa0624230 | 0.801172 | 1.020650e-48 | -8.615850e-47 |
| Msa0442650 | Msa0845070 | 0.800579 | 1.349033e-48 | -8.615850e-47 |
| Msa0442650 | Msa0944730 | 0.805102 | 1.570034e-49 | -8.615850e-47 |
| Msa0442650 | Msa0960240 | 0.813490 | 2.493039e-51 | -8.615850e-47 |
| Msa0442650 | Msa1031820 | 0.810056 | 1.393736e-50 | -8.615850e-47 |
| Msa0442650 | Msa1202750 | 0.810566 | 1.081382e-50 | -8.615850e-47 |
| Msa0363170 | Msa0442650 | 0.802026 | 6.819747e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442650 | MtrunA17_Chr3g0077351 | 99.130 | 345 | 3 | 0 | 1 | 345 | 1 | 345 | 0.0 | 712 |
| Msa0442650 | MtrunA17_Chr7g0219561 | 48.824 | 340 | 150 | 5 | 28 | 344 | 35 | 373 | 4.33e-110 | 325 |
| Msa0442650 | MtrunA17_Chr5g0428471 | 36.000 | 250 | 159 | 1 | 93 | 342 | 29 | 277 | 1.72e-50 | 169 |
| Msa0442650 | MtrunA17_Chr3g0128581 | 34.191 | 272 | 177 | 2 | 71 | 342 | 13 | 282 | 1.84e-49 | 167 |
| Msa0442650 | MtrunA17_Chr5g0402871 | 35.496 | 262 | 154 | 4 | 90 | 342 | 1 | 256 | 2.52e-47 | 160 |
| Msa0442650 | MtrunA17_Chr5g0402851 | 34.118 | 255 | 163 | 3 | 93 | 343 | 7 | 260 | 2.19e-46 | 158 |
| Msa0442650 | MtrunA17_Chr5g0402841 | 36.220 | 254 | 156 | 4 | 93 | 342 | 7 | 258 | 2.26e-45 | 155 |
| Msa0442650 | MtrunA17_Chr8g0336391 | 33.205 | 259 | 166 | 4 | 90 | 343 | 23 | 279 | 4.84e-44 | 152 |
| Msa0442650 | MtrunA17_Chr8g0336381 | 33.594 | 256 | 162 | 3 | 93 | 342 | 6 | 259 | 1.82e-42 | 148 |
| Msa0442650 | MtrunA17_Chr3g0104871 | 31.298 | 262 | 164 | 4 | 90 | 343 | 15 | 268 | 6.56e-40 | 141 |
| Msa0442650 | MtrunA17_Chr8g0336441 | 33.594 | 256 | 160 | 6 | 93 | 343 | 26 | 276 | 1.52e-39 | 141 |
| Msa0442650 | MtrunA17_Chr8g0336411 | 30.651 | 261 | 171 | 4 | 89 | 343 | 23 | 279 | 7.48e-39 | 139 |
| Msa0442650 | MtrunA17_Chr8g0336401 | 32.932 | 249 | 159 | 4 | 93 | 334 | 26 | 273 | 1.14e-37 | 136 |
| Msa0442650 | MtrunA17_Chr5g0402881 | 33.721 | 258 | 159 | 4 | 91 | 343 | 26 | 276 | 3.32e-35 | 129 |
| Msa0442650 | MtrunA17_Chr8g0374141 | 32.308 | 260 | 160 | 5 | 90 | 342 | 49 | 299 | 6.27e-35 | 129 |
| Msa0442650 | MtrunA17_Chr5g0402901 | 34.572 | 269 | 152 | 5 | 85 | 342 | 3 | 258 | 8.72e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442650 | AT4G09900.1 | 73.219 | 351 | 84 | 4 | 1 | 344 | 1 | 348 | 0.0 | 529 |
| Msa0442650 | AT1G33990.1 | 71.182 | 347 | 97 | 2 | 1 | 344 | 1 | 347 | 1.65e-179 | 501 |
| Msa0442650 | AT1G26360.1 | 53.409 | 264 | 120 | 2 | 83 | 344 | 176 | 438 | 4.44e-101 | 305 |
| Msa0442650 | AT1G69240.1 | 52.652 | 264 | 123 | 2 | 83 | 344 | 175 | 438 | 1.07e-99 | 301 |
| Msa0442650 | AT3G29770.1 | 49.342 | 304 | 139 | 3 | 55 | 344 | 85 | 387 | 2.72e-99 | 299 |
| Msa0442650 | AT4G16690.1 | 38.866 | 247 | 144 | 3 | 95 | 339 | 13 | 254 | 2.51e-51 | 171 |
| Msa0442650 | AT5G58310.1 | 35.433 | 254 | 157 | 3 | 95 | 342 | 6 | 258 | 3.23e-50 | 169 |
| Msa0442650 | AT2G23560.1 | 38.672 | 256 | 147 | 5 | 93 | 343 | 7 | 257 | 9.01e-50 | 167 |
| Msa0442650 | AT3G10870.1 | 36.260 | 262 | 161 | 3 | 85 | 342 | 11 | 270 | 4.09e-49 | 166 |
| Msa0442650 | AT2G23610.1 | 35.907 | 259 | 162 | 3 | 88 | 343 | 3 | 260 | 1.23e-48 | 164 |
| Msa0442650 | AT2G23620.1 | 37.736 | 265 | 147 | 6 | 88 | 342 | 3 | 259 | 1.24e-45 | 157 |
| Msa0442650 | AT2G23580.1 | 37.931 | 261 | 155 | 5 | 87 | 342 | 1 | 259 | 3.25e-44 | 153 |
| Msa0442650 | AT2G23600.2 | 36.015 | 261 | 157 | 5 | 88 | 342 | 18 | 274 | 1.31e-43 | 152 |
| Msa0442650 | AT2G23600.1 | 36.015 | 261 | 157 | 5 | 88 | 342 | 3 | 259 | 1.65e-43 | 151 |
| Msa0442650 | AT2G23590.1 | 34.981 | 263 | 150 | 6 | 88 | 343 | 21 | 269 | 4.18e-43 | 150 |
| Msa0442650 | AT4G37150.1 | 34.902 | 255 | 159 | 5 | 93 | 343 | 2 | 253 | 1.39e-42 | 149 |
| Msa0442650 | AT2G23610.2 | 33.591 | 259 | 123 | 5 | 88 | 343 | 3 | 215 | 2.12e-41 | 144 |
| Msa0442650 | AT3G50440.1 | 33.068 | 251 | 164 | 3 | 95 | 342 | 22 | 271 | 4.91e-40 | 142 |
| Msa0442650 | AT2G23550.4 | 33.846 | 260 | 169 | 2 | 87 | 343 | 8 | 267 | 1.82e-38 | 138 |
| Msa0442650 | AT2G23550.1 | 33.846 | 260 | 169 | 2 | 87 | 343 | 1 | 260 | 2.38e-38 | 137 |
| Msa0442650 | AT5G10300.1 | 33.465 | 254 | 165 | 3 | 91 | 342 | 3 | 254 | 6.11e-32 | 120 |
| Msa0442650 | AT2G23600.3 | 48.182 | 110 | 56 | 1 | 88 | 196 | 18 | 127 | 1.21e-29 | 112 |
| Msa0442650 | AT2G23550.2 | 29.730 | 259 | 152 | 2 | 87 | 343 | 1 | 231 | 1.43e-26 | 105 |
| Msa0442650 | AT4G37140.1 | 44.231 | 104 | 58 | 0 | 93 | 196 | 2 | 105 | 1.05e-25 | 100 |
| Msa0442650 | AT2G23580.2 | 41.985 | 131 | 75 | 1 | 87 | 216 | 1 | 131 | 4.29e-24 | 98.2 |
| Msa0442650 | AT3G29770.2 | 42.063 | 126 | 59 | 2 | 55 | 166 | 85 | 210 | 3.47e-23 | 97.8 |
| Msa0442650 | AT4G37140.2 | 43.956 | 91 | 51 | 0 | 93 | 183 | 2 | 92 | 4.73e-23 | 92.4 |
| Msa0442650 | AT5G10300.2 | 48.039 | 102 | 53 | 0 | 95 | 196 | 7 | 108 | 7.82e-22 | 92.0 |
| Msa0442650 | AT2G23550.3 | 40.458 | 131 | 77 | 1 | 87 | 216 | 8 | 138 | 4.60e-21 | 90.1 |
| Msa0442650 | AT2G23570.1 | 30.337 | 178 | 118 | 4 | 170 | 343 | 1 | 176 | 8.72e-14 | 69.3 |
Find 75 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAACTCTATTCTTTAATT+TGG | 0.171021 | 3_3:+12564415 | None:intergenic |
| TTAATGTTCTCTAGAAGTTC+TGG | 0.261337 | 3_3:+12567524 | None:intergenic |
| TTGATCCATGGAGAAGGTTT+TGG | 0.281485 | 3_3:-12567485 | Msa0442650:CDS |
| CCTGTTGCATTAGATCTTAC+AGG | 0.288046 | 3_3:-12567410 | Msa0442650:CDS |
| GCATCTTCAAGCTTTATCTA+TGG | 0.293071 | 3_3:-12569012 | Msa0442650:CDS |
| CAATGGTGACCGATGGTAAA+AGG | 0.314691 | 3_3:-12567104 | Msa0442650:CDS |
| CAAATCCTGCATACCTTTGC+TGG | 0.345783 | 3_3:+12566212 | None:intergenic |
| ATTCTTTAATTTGGTGAGTT+GGG | 0.355640 | 3_3:+12564424 | None:intergenic |
| TTGTTGACTGGAACAGAATC+AGG | 0.358714 | 3_3:+12568909 | None:intergenic |
| GCATTAGATCTTACAGGATC+TGG | 0.384850 | 3_3:-12567404 | Msa0442650:CDS |
| TAGAGTTCACATGGCCTAGC+TGG | 0.386730 | 3_3:-12564402 | Msa0442650:three_prime_UTR |
| CAACATTCTCAGAGGTTTGA+AGG | 0.389834 | 3_3:-12568981 | Msa0442650:CDS |
| GGTTCTATGTCTAGAAGAAT+TGG | 0.389853 | 3_3:-12568960 | Msa0442650:CDS |
| ACAAGCTTCTCTTGGACATC+TGG | 0.391126 | 3_3:+12564615 | None:intergenic |
| TCGGAGAGATGGAGAATTTG+TGG | 0.405845 | 3_3:+12569257 | None:intergenic |
| TATTCTTTAATTTGGTGAGT+TGG | 0.411322 | 3_3:+12564423 | None:intergenic |
| CCTGTAAGATCTAATGCAAC+AGG | 0.428510 | 3_3:+12567410 | None:intergenic |
| TCAATGAGACTTAGTCCAAT+TGG | 0.433243 | 3_3:-12564729 | Msa0442650:CDS |
| GAAGTCCTACTTCTTCTAGA+AGG | 0.446567 | 3_3:+12567435 | None:intergenic |
| TTCTCCATGAGTGGACCAAT+TGG | 0.447966 | 3_3:+12564714 | None:intergenic |
| TGCTTGCATTTCTTATGCAT+TGG | 0.453247 | 3_3:-12567172 | Msa0442650:CDS |
| ATTAATGAAACAAAGAAACT+TGG | 0.459959 | 3_3:+12569188 | None:intergenic |
| TTCTGTTCCAGTCAACAAAC+AGG | 0.461427 | 3_3:-12568904 | Msa0442650:intron |
| TCTCAAACATAAATCCTGTC+GGG | 0.463929 | 3_3:+12566270 | None:intergenic |
| GATTGTGGTTTGGAGAAGAA+TGG | 0.464583 | 3_3:+12564540 | None:intergenic |
| TGGATCAAGAAGCAAAAGAA+TGG | 0.466929 | 3_3:-12569081 | Msa0442650:CDS |
| ATAATCATGAAATATAATAG+AGG | 0.475156 | 3_3:-12564354 | Msa0442650:three_prime_UTR |
| CTCTTGGACATCTGGTGAAA+GGG | 0.478250 | 3_3:+12564623 | None:intergenic |
| GAATCAAAATTTCTGATCCA+TGG | 0.483875 | 3_3:-12566311 | Msa0442650:CDS |
| AGCAAAAGAATGGGTGGTGG+TGG | 0.487355 | 3_3:-12569071 | Msa0442650:CDS |
| TAATTTGGTGAGTTGGGAGA+TGG | 0.493688 | 3_3:+12564430 | None:intergenic |
| AGCAGAACCTGTTTGTTGAC+TGG | 0.503298 | 3_3:+12568897 | None:intergenic |
| AAATCCTGCATACCTTTGCT+GGG | 0.508796 | 3_3:+12566213 | None:intergenic |
| AAGAAGTTTGTATTGATCCA+TGG | 0.508829 | 3_3:-12567497 | Msa0442650:CDS |
| ATTCTTGTTGGTCATAGCAT+CGG | 0.511050 | 3_3:-12567198 | Msa0442650:CDS |
| AAACCTTCCTGAGGACGAAA+AGG | 0.513992 | 3_3:-12567309 | Msa0442650:intron |
| TTTGTGGAGAGATTGTGGTT+TGG | 0.519899 | 3_3:+12564530 | None:intergenic |
| TAGTCCAATTGGTCCACTCA+TGG | 0.526948 | 3_3:-12564718 | Msa0442650:CDS |
| TGAATACTAAATTGTCTCAA+AGG | 0.527206 | 3_3:+12564314 | None:intergenic |
| TCTCTTGGACATCTGGTGAA+AGG | 0.530589 | 3_3:+12564622 | None:intergenic |
| GATGTCCAAGAGAAGCTTGT+GGG | 0.533159 | 3_3:-12564612 | Msa0442650:CDS |
| AAATTTCTGATCCATGGTAA+TGG | 0.533294 | 3_3:-12566305 | Msa0442650:CDS |
| TTCTCAAACATAAATCCTGT+CGG | 0.542227 | 3_3:+12566269 | None:intergenic |
| ATTGAATAAACAATAAACAT+TGG | 0.548044 | 3_3:+12564191 | None:intergenic |
| TGATCAGCGAAAACATCAAA+CGG | 0.551470 | 3_3:+12567081 | None:intergenic |
| GGACATCTGGTGAAAGGGCG+CGG | 0.557408 | 3_3:+12564628 | None:intergenic |
| ACAGGATGTTGCTTTAGCCA+TGG | 0.558352 | 3_3:-12564754 | Msa0442650:intron |
| AGAGTTCACATGGCCTAGCT+GGG | 0.560371 | 3_3:-12564401 | Msa0442650:three_prime_UTR |
| TTAATGAAACAAAGAAACTT+GGG | 0.564672 | 3_3:+12569189 | None:intergenic |
| TTTGAGAAAGAGCAGATGAA+AGG | 0.565452 | 3_3:-12566254 | Msa0442650:CDS |
| TTTGTATTGATCCATGGAGA+AGG | 0.572756 | 3_3:-12567491 | Msa0442650:CDS |
| ATGCTCCAAAACCTTCTCCA+TGG | 0.573826 | 3_3:+12567480 | None:intergenic |
| GGATCAAGAAGCAAAAGAAT+GGG | 0.575816 | 3_3:-12569080 | Msa0442650:CDS |
| AAGTCCTACTTCTTCTAGAA+GGG | 0.576510 | 3_3:+12567436 | None:intergenic |
| ATTTAGTATTCAACTAGTGA+AGG | 0.586626 | 3_3:-12564303 | Msa0442650:three_prime_UTR |
| ATCTAACTCATCTCCCAGCT+AGG | 0.589227 | 3_3:+12564388 | None:intergenic |
| ATGTCCAAGAGAAGCTTGTG+GGG | 0.592478 | 3_3:-12564611 | Msa0442650:CDS |
| GTTGCCCTTCTAGAAGAAGT+AGG | 0.598417 | 3_3:-12567440 | Msa0442650:CDS |
| CACTTCAACAACATTCTCAG+AGG | 0.599623 | 3_3:-12568989 | Msa0442650:CDS |
| CTCAAACATAAATCCTGTCG+GGG | 0.602026 | 3_3:+12566271 | None:intergenic |
| AAACACAGCTTCTCCATGAG+TGG | 0.602160 | 3_3:+12564705 | None:intergenic |
| CAGCAACAATGTCACTACAT+TGG | 0.613276 | 3_3:-12567366 | Msa0442650:CDS |
| CTTGTTGGTCATAGCATCGG+TGG | 0.615137 | 3_3:-12567195 | Msa0442650:CDS |
| TTATCTTGAAAACCTTCCTG+AGG | 0.623264 | 3_3:-12567318 | Msa0442650:CDS |
| ACTAAGTCTCATTGAAACCA+TGG | 0.627171 | 3_3:+12564737 | None:intergenic |
| AATCCTGCATACCTTTGCTG+GGG | 0.635718 | 3_3:+12566214 | None:intergenic |
| ATTAAAGAATAGAGTTCACA+TGG | 0.639877 | 3_3:-12564411 | Msa0442650:three_prime_UTR |
| AGAAGCAAAAGAATGGGTGG+TGG | 0.652319 | 3_3:-12569074 | Msa0442650:CDS |
| TCAAGAAGCAAAAGAATGGG+TGG | 0.659157 | 3_3:-12569077 | Msa0442650:CDS |
| CGGTCACCATTGTAGCACAA+AGG | 0.662055 | 3_3:+12567115 | None:intergenic |
| TCAAACATAAATCCTGTCGG+GGG | 0.666166 | 3_3:+12566272 | None:intergenic |
| AGATGTCCAAGAGAAGCTTG+TGG | 0.689988 | 3_3:-12564613 | Msa0442650:CDS |
| TGTCCAAGAGAAGCTTGTGG+GGG | 0.707255 | 3_3:-12564610 | Msa0442650:CDS |
| TGTGCTACAATGGTGACCGA+TGG | 0.718076 | 3_3:-12567111 | Msa0442650:CDS |
| GTGGTGGTGGTAGATCACAG+AGG | 0.837688 | 3_3:-12569058 | Msa0442650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTCAATTTCTTTTT+TGG | - | chr3_3:12564565-12564584 | Msa0442650:CDS | 10.0% |
| !!! | TTTTTTTCAATTTCTTTTTT+GGG | - | chr3_3:12564566-12564585 | Msa0442650:CDS | 10.0% |
| !! | AAAAATTATTCAATTGTAAA+TGG | - | chr3_3:12564782-12564801 | Msa0442650:intron | 10.0% |
| !!! | TATAATTAATTTCTGAAATA+TGG | + | chr3_3:12565815-12565834 | None:intergenic | 10.0% |
| !! | ACAATTATATAATATTAACA+TGG | - | chr3_3:12566543-12566562 | Msa0442650:intron | 10.0% |
| !!! | GTAAATTCTATATTATTTTT+AGG | - | chr3_3:12567805-12567824 | Msa0442650:intron | 10.0% |
| !! | AAAGTTGAAAAGAAAAAAAA+TGG | - | chr3_3:12564287-12564306 | Msa0442650:three_prime_UTR | 15.0% |
| !! | AAGTTGAAAAGAAAAAAAAT+GGG | - | chr3_3:12564288-12564307 | Msa0442650:three_prime_UTR | 15.0% |
| !!! | TATTTTTTTATAGGCTAAAA+AGG | - | chr3_3:12564862-12564881 | Msa0442650:intron | 15.0% |
| !! | AATTTGAGTAATCAATATAT+AGG | - | chr3_3:12565741-12565760 | Msa0442650:intron | 15.0% |
| !!! | CAATACTATTTTAATCTTTT+CGG | - | chr3_3:12565850-12565869 | Msa0442650:intron | 15.0% |
| !! | ATGTGTATATTTCATAAAAA+TGG | - | chr3_3:12566198-12566217 | Msa0442650:intron | 15.0% |
| !!! | TTTCATAAAAATGGAAATTT+TGG | - | chr3_3:12566207-12566226 | Msa0442650:intron | 15.0% |
| !! | TAATGTGATAATTACTTATT+TGG | + | chr3_3:12567558-12567577 | None:intergenic | 15.0% |
| !!! | TTTTATATCAATAGATATAC+CGG | - | chr3_3:12567581-12567600 | Msa0442650:intron | 15.0% |
| !! | TATTCTTTGTCTAAATAATT+TGG | - | chr3_3:12567949-12567968 | Msa0442650:intron | 15.0% |
| !! | TTAACTATGAAATAGAAAAT+AGG | + | chr3_3:12568366-12568385 | None:intergenic | 15.0% |
| !! | NNNNNNNNNNCATGATTCAA+GGG | - | chr3_3:12568484-12568503 | Msa0442650:intron | 15.0% |
| !!! | CTATTTCAATTAAAATTTTG+TGG | + | chr3_3:12568923-12568942 | None:intergenic | 15.0% |
| !! | ATAATCATGAAATATAATAG+AGG | - | chr3_3:12569080-12569099 | Msa0442650:CDS | 15.0% |
| !! | ATTGAATAAACAATAAACAT+TGG | + | chr3_3:12569246-12569265 | None:intergenic | 15.0% |
| !! | TTAATGAAACAAAGAAACTT+GGG | + | chr3_3:12564248-12564267 | None:intergenic | 20.0% |
| !! | ATTAATGAAACAAAGAAACT+TGG | + | chr3_3:12564249-12564268 | None:intergenic | 20.0% |
| !! | AAAAAAGATTCAAAAGAAGT+TGG | - | chr3_3:12564333-12564352 | Msa0442650:three_prime_UTR | 20.0% |
| !! | TCTTAAATCTTAAAGTAAGA+TGG | - | chr3_3:12564755-12564774 | Msa0442650:intron | 20.0% |
| !! | TGTTGTTAAAAAGAAATCAA+GGG | - | chr3_3:12564826-12564845 | Msa0442650:intron | 20.0% |
| !!! | TTTTCAAGATAAACAGTTAA+AGG | + | chr3_3:12566108-12566127 | None:intergenic | 20.0% |
| !! | AGGAATTTAAATTTGATTCA+AGG | + | chr3_3:12566449-12566468 | None:intergenic | 20.0% |
| !!! | AATGTTTTAGCTGTATATTA+AGG | + | chr3_3:12566469-12566488 | None:intergenic | 20.0% |
| !! | AATCTCAATTAATTGGATTT+GGG | - | chr3_3:12566604-12566623 | Msa0442650:intron | 20.0% |
| !!! | TTAGTAAACATTTTTTACCA+AGG | + | chr3_3:12566773-12566792 | None:intergenic | 20.0% |
| !!! | CTATATTTATACTACTTTTG+TGG | + | chr3_3:12566796-12566815 | None:intergenic | 20.0% |
| !! | AATAGGATGTAATTTGAAAA+GGG | + | chr3_3:12567021-12567040 | None:intergenic | 20.0% |
| !! | AAATAGGATGTAATTTGAAA+AGG | + | chr3_3:12567022-12567041 | None:intergenic | 20.0% |
| !! | AGAAATGAAAGAGAAAAAAA+GGG | + | chr3_3:12567382-12567401 | None:intergenic | 20.0% |
| !! | TAGAAATGAAAGAGAAAAAA+AGG | + | chr3_3:12567383-12567402 | None:intergenic | 20.0% |
| !! | TAAGCTATTAACAATGTATT+TGG | + | chr3_3:12567510-12567529 | None:intergenic | 20.0% |
| !! | TCAATAATAATAACTAGAAC+CGG | + | chr3_3:12567603-12567622 | None:intergenic | 20.0% |
| !! | ACTAGTGATTTATATAACAT+AGG | - | chr3_3:12567666-12567685 | Msa0442650:intron | 20.0% |
| !! | CTAGTGATTTATATAACATA+GGG | - | chr3_3:12567667-12567686 | Msa0442650:intron | 20.0% |
| !! | TAGTGATTTATATAACATAG+GGG | - | chr3_3:12567668-12567687 | Msa0442650:intron | 20.0% |
| !!! | TTGAGGTTTTTTAAGATAAT+AGG | - | chr3_3:12567844-12567863 | Msa0442650:intron | 20.0% |
| !!! | GTAAACTTCTCTTATATTTT+TGG | - | chr3_3:12569160-12569179 | Msa0442650:five_prime_UTR | 20.0% |
| !!! | TATACTTTAGATTTTGACTT+TGG | - | chr3_3:12569217-12569236 | Msa0442650:five_prime_UTR | 20.0% |
| !!! | TTGTGTTTTTTGTTTGGTTT+TGG | + | chr3_3:12564208-12564227 | None:intergenic | 25.0% |
| !!! | GTTTGATTGTGTTTTTTGTT+TGG | + | chr3_3:12564214-12564233 | None:intergenic | 25.0% |
| ! | ATTTGATAAGTTTCAGAAAG+TGG | - | chr3_3:12564712-12564731 | Msa0442650:CDS | 25.0% |
| ! | TTTGATAAGTTTCAGAAAGT+GGG | - | chr3_3:12564713-12564732 | Msa0442650:CDS | 25.0% |
| !! | GTGTTGTTAAAAAGAAATCA+AGG | - | chr3_3:12564825-12564844 | Msa0442650:intron | 25.0% |
| !!! | TTTTTTATAGGCTAAAAAGG+TGG | - | chr3_3:12564865-12564884 | Msa0442650:intron | 25.0% |
| !! | TTCATTAACACAGTGAATTT+TGG | + | chr3_3:12564916-12564935 | None:intergenic | 25.0% |
| !! | GTAAAGAAGTACAAAAATAC+AGG | + | chr3_3:12564974-12564993 | None:intergenic | 25.0% |
| !! | GTTGTTATTATTGTTAAGCA+TGG | - | chr3_3:12565084-12565103 | Msa0442650:intron | 25.0% |
| ! | ATCTAAATTAAGTGCATCTT+TGG | - | chr3_3:12565292-12565311 | Msa0442650:intron | 25.0% |
| !!! | AATTGATTTTGATACGTTTC+AGG | - | chr3_3:12565356-12565375 | Msa0442650:intron | 25.0% |
| ! | TATACTTAAATATTTGGGAG+AGG | - | chr3_3:12565680-12565699 | Msa0442650:intron | 25.0% |
| !! | TTCAAATACTTTTCCATTCT+AGG | + | chr3_3:12565723-12565742 | None:intergenic | 25.0% |
| !!! | ATAAAAATGGAAATTTTGGC+AGG | - | chr3_3:12566211-12566230 | Msa0442650:intron | 25.0% |
| ! | TTGAGAGTTCACATATTATA+TGG | - | chr3_3:12566414-12566433 | Msa0442650:intron | 25.0% |
| ! | GTTGTTCAATCTCAATTAAT+TGG | - | chr3_3:12566597-12566616 | Msa0442650:intron | 25.0% |
| ! | CAATCTCAATTAATTGGATT+TGG | - | chr3_3:12566603-12566622 | Msa0442650:intron | 25.0% |
| ! | ATCTCAATTAATTGGATTTG+GGG | - | chr3_3:12566605-12566624 | Msa0442650:intron | 25.0% |
| ! | AAATTACTTGTGATCACATT+TGG | + | chr3_3:12566908-12566927 | None:intergenic | 25.0% |
| ! | TGATGAAATTTCATTACCAA+AGG | - | chr3_3:12566986-12567005 | Msa0442650:intron | 25.0% |
| ! | ATAGGATGTAATTTGAAAAG+GGG | + | chr3_3:12567020-12567039 | None:intergenic | 25.0% |
| !! | ATCCTATTTTGCATTTTTCT+TGG | - | chr3_3:12567033-12567052 | Msa0442650:intron | 25.0% |
| ! | TTCCAAGAAAAATGCAAAAT+AGG | + | chr3_3:12567038-12567057 | None:intergenic | 25.0% |
| !! | TTGTTGCTATTCATTTAAGT+TGG | - | chr3_3:12567278-12567297 | Msa0442650:intron | 25.0% |
| !! | TCTCTTTCATTTCTAAGAAA+TGG | - | chr3_3:12567388-12567407 | Msa0442650:CDS | 25.0% |
| !! | TTTCATTTCTAAGAAATGGT+TGG | - | chr3_3:12567392-12567411 | Msa0442650:CDS | 25.0% |
| ! | TAATATGCAGAAAGAAATGT+TGG | - | chr3_3:12567457-12567476 | Msa0442650:CDS | 25.0% |
| ! | TACATTGTTAATAGCTTAAG+AGG | - | chr3_3:12567512-12567531 | Msa0442650:CDS | 25.0% |
| ! | GAATATGATTAAATGTGTCA+TGG | - | chr3_3:12567621-12567640 | Msa0442650:intron | 25.0% |
| !!! | TACAATTTTTCAATGTCGAT+GGG | + | chr3_3:12567788-12567807 | None:intergenic | 25.0% |
| !!! | TTACAATTTTTCAATGTCGA+TGG | + | chr3_3:12567789-12567808 | None:intergenic | 25.0% |
| ! | TTATCTTAAAAAACCTCAAG+TGG | + | chr3_3:12567843-12567862 | None:intergenic | 25.0% |
| !!! | TGTCTAAATAATTTGGTGTT+AGG | - | chr3_3:12567956-12567975 | Msa0442650:intron | 25.0% |
| !!! | GTCTAAATAATTTGGTGTTA+GGG | - | chr3_3:12567957-12567976 | Msa0442650:intron | 25.0% |
| ! | AATTGTGTAGATAGTTGAAA+AGG | - | chr3_3:12568023-12568042 | Msa0442650:intron | 25.0% |
| !!! | AGTTGAAAAGGTATTCATAA+TGG | - | chr3_3:12568035-12568054 | Msa0442650:intron | 25.0% |
| !!! | AATTATTTTTGGAGTTCTGA+GGG | + | chr3_3:12568067-12568086 | None:intergenic | 25.0% |
| !!! | CTACAATACTTAAGTTTTAG+AGG | + | chr3_3:12568138-12568157 | None:intergenic | 25.0% |
| !! | TATGTTTTTCGTGAAGAATT+TGG | + | chr3_3:12568183-12568202 | None:intergenic | 25.0% |
| ! | AAGAATAAAGTAAACCAAAC+GGG | + | chr3_3:12568272-12568291 | None:intergenic | 25.0% |
| ! | GAAGAATAAAGTAAACCAAA+CGG | + | chr3_3:12568273-12568292 | None:intergenic | 25.0% |
| ! | ATAAATCTGGTTGGAAATTA+AGG | + | chr3_3:12568609-12568628 | None:intergenic | 25.0% |
| ! | ATAGTGAGAATCTATAAATC+TGG | + | chr3_3:12568622-12568641 | None:intergenic | 25.0% |
| ! | TGTTTATCTCCTGAAAAATA+TGG | - | chr3_3:12568747-12568766 | Msa0442650:intron | 25.0% |
| !!! | ATTCTTTAATTTGGTGAGTT+GGG | + | chr3_3:12569013-12569032 | None:intergenic | 25.0% |
| !!! | TATTCTTTAATTTGGTGAGT+TGG | + | chr3_3:12569014-12569033 | None:intergenic | 25.0% |
| ! | GTGAACTCTATTCTTTAATT+TGG | + | chr3_3:12569022-12569041 | None:intergenic | 25.0% |
| ! | ATTAAAGAATAGAGTTCACA+TGG | - | chr3_3:12569023-12569042 | Msa0442650:CDS | 25.0% |
| ! | TGAATACTAAATTGTCTCAA+AGG | + | chr3_3:12569123-12569142 | None:intergenic | 25.0% |
| ! | ATTTAGTATTCAACTAGTGA+AGG | - | chr3_3:12569131-12569150 | Msa0442650:CDS | 25.0% |
| !!! | TGTTTTTTGTTTGGTTTTGG+TGG | + | chr3_3:12564205-12564224 | None:intergenic | 30.0% |
| ATTTGATCAGTTTCAGAAAG+TGG | - | chr3_3:12564637-12564656 | Msa0442650:CDS | 30.0% | |
| TTTGATCAGTTTCAGAAAGT+GGG | - | chr3_3:12564638-12564657 | Msa0442650:CDS | 30.0% | |
| ! | GTATGTATCTAGAAAAGTAC+AGG | - | chr3_3:12564889-12564908 | Msa0442650:intron | 30.0% |
| TTCACTGTGTTAATGAAAAG+TGG | - | chr3_3:12564919-12564938 | Msa0442650:intron | 30.0% | |
| AACAACACATCAGTAATTAG+TGG | + | chr3_3:12565070-12565089 | None:intergenic | 30.0% | |
| GTCTATAGTGAAGAATCTAA+GGG | - | chr3_3:12565150-12565169 | Msa0442650:intron | 30.0% | |
| TCTATAGTGAAGAATCTAAG+GGG | - | chr3_3:12565151-12565170 | Msa0442650:intron | 30.0% | |
| ! | CTTCAATAAAGGTACAAACT+AGG | + | chr3_3:12565209-12565228 | None:intergenic | 30.0% |
| ! | ATGGTGATTGACTTCAATAA+AGG | + | chr3_3:12565220-12565239 | None:intergenic | 30.0% |
| GTGCTTAATTCTTATACAGT+TGG | - | chr3_3:12565254-12565273 | Msa0442650:intron | 30.0% | |
| AGACAAAATCAATTCTAACC+AGG | + | chr3_3:12565384-12565403 | None:intergenic | 30.0% | |
| TTGAGTGCAAAAATCATGTT+TGG | + | chr3_3:12565443-12565462 | None:intergenic | 30.0% | |
| ! | CTAACTAACTCCTTTTCTTA+AGG | - | chr3_3:12565623-12565642 | Msa0442650:intron | 30.0% |
| TTTCAAACAGCCTTAAGAAA+AGG | + | chr3_3:12565636-12565655 | None:intergenic | 30.0% | |
| ! | TTAATGTTCTCTAGAAGTTC+TGG | + | chr3_3:12565913-12565932 | None:intergenic | 30.0% |
| ! | AAGAAGTTTGTATTGATCCA+TGG | - | chr3_3:12565937-12565956 | Msa0442650:intron | 30.0% |
| TGAACTCTCAAAAATTCAAC+TGG | + | chr3_3:12566405-12566424 | None:intergenic | 30.0% | |
| ATCACAAATTTACTGTCACA+TGG | - | chr3_3:12566645-12566664 | Msa0442650:intron | 30.0% | |
| GAATCAAAATTTCTGATCCA+TGG | - | chr3_3:12567123-12567142 | Msa0442650:CDS | 30.0% | |
| AAATTTCTGATCCATGGTAA+TGG | - | chr3_3:12567129-12567148 | Msa0442650:CDS | 30.0% | |
| TTCTCAAACATAAATCCTGT+CGG | + | chr3_3:12567168-12567187 | None:intergenic | 30.0% | |
| ! | ATTTCTAAGAAATGGTTGGA+TGG | - | chr3_3:12567396-12567415 | Msa0442650:CDS | 30.0% |
| ! | TCATCTGAAATGTATTACTG+CGG | - | chr3_3:12567482-12567501 | Msa0442650:CDS | 30.0% |
| ATTTATATAACATAGGGGCA+AGG | - | chr3_3:12567673-12567692 | Msa0442650:intron | 30.0% | |
| !! | ACAATTTTTCAATGTCGATG+GGG | + | chr3_3:12567787-12567806 | None:intergenic | 30.0% |
| GATAAATTTCAATCCACTTG+AGG | - | chr3_3:12567827-12567846 | Msa0442650:intron | 30.0% | |
| !!! | CAATTATTTTTGGAGTTCTG+AGG | + | chr3_3:12568068-12568087 | None:intergenic | 30.0% |
| CTCAGAACTCCAAAAATAAT+TGG | - | chr3_3:12568066-12568085 | Msa0442650:intron | 30.0% | |
| ! | GAATACCAGCCAATTATTTT+TGG | + | chr3_3:12568078-12568097 | None:intergenic | 30.0% |
| TGTTCTTTAATCTTAAAGCC+AGG | + | chr3_3:12568103-12568122 | None:intergenic | 30.0% | |
| !!! | GAACTGTTACCTTTTTTAGA+GGG | - | chr3_3:12568232-12568251 | Msa0442650:intron | 30.0% |
| AAAATAGGAGCTTCGAAAAA+AGG | + | chr3_3:12568351-12568370 | None:intergenic | 30.0% | |
| TGAGAATCTATAAATCTGGT+TGG | + | chr3_3:12568618-12568637 | None:intergenic | 30.0% | |
| CTCACTATAAATATCTGATC+TGG | - | chr3_3:12568634-12568653 | Msa0442650:intron | 30.0% | |
| CCAGTGTTTGAATGTAAAAA+CGG | + | chr3_3:12568782-12568801 | None:intergenic | 30.0% | |
| !! | TTGATTTTGAAAACTCCTTC+AGG | + | chr3_3:12568858-12568877 | None:intergenic | 30.0% |
| ! | GAAGGAGTTTTCAAAATCAA+AGG | - | chr3_3:12568858-12568877 | Msa0442650:intron | 30.0% |
| ! | AAAATTTTGTGGAGAGATTG+TGG | + | chr3_3:12568912-12568931 | None:intergenic | 30.0% |
| !!! | TTGTTTGGTTTTGGTGGTTT+CGG | + | chr3_3:12564199-12564218 | None:intergenic | 35.0% |
| TGGATCAAGAAGCAAAAGAA+TGG | - | chr3_3:12564353-12564372 | Msa0442650:three_prime_UTR | 35.0% | |
| GGATCAAGAAGCAAAAGAAT+GGG | - | chr3_3:12564354-12564373 | Msa0442650:three_prime_UTR | 35.0% | |
| ! | GCATCTTCAAGCTTTATCTA+TGG | - | chr3_3:12564422-12564441 | Msa0442650:three_prime_UTR | 35.0% |
| GGTTCTATGTCTAGAAGAAT+TGG | - | chr3_3:12564474-12564493 | Msa0442650:three_prime_UTR | 35.0% | |
| !!! | TTTTGGGTTTGCATGCTTTT+TGG | - | chr3_3:12564582-12564601 | Msa0442650:CDS | 35.0% |
| ! | ATTGTTAAGCATGGAGTACT+AGG | - | chr3_3:12565093-12565112 | Msa0442650:intron | 35.0% |
| CGTCTATAGTGAAGAATCTA+AGG | - | chr3_3:12565149-12565168 | Msa0442650:intron | 35.0% | |
| CTATAGTGAAGAATCTAAGG+GGG | - | chr3_3:12565152-12565171 | Msa0442650:intron | 35.0% | |
| TATAGTGAAGAATCTAAGGG+GGG | - | chr3_3:12565153-12565172 | Msa0442650:intron | 35.0% | |
| ! | CAATAAAGGTACAAACTAGG+AGG | + | chr3_3:12565206-12565225 | None:intergenic | 35.0% |
| AAGTCAATCACCATCTATTC+TGG | - | chr3_3:12565226-12565245 | Msa0442650:intron | 35.0% | |
| ! | TGCATCTTTGGATTCACTTT+TGG | - | chr3_3:12565304-12565323 | Msa0442650:intron | 35.0% |
| !! | GCATCTTTGGATTCACTTTT+GGG | - | chr3_3:12565305-12565324 | Msa0442650:intron | 35.0% |
| AGTGCAAAAATCATGTTTGG+AGG | + | chr3_3:12565440-12565459 | None:intergenic | 35.0% | |
| ! | AGGCTGTTTGAAATGTTGTT+TGG | - | chr3_3:12565643-12565662 | Msa0442650:intron | 35.0% |
| ! | TTTGTATTGATCCATGGAGA+AGG | - | chr3_3:12565943-12565962 | Msa0442650:intron | 35.0% |
| ! | AAGTCCTACTTCTTCTAGAA+GGG | + | chr3_3:12566001-12566020 | None:intergenic | 35.0% |
| TTATCTTGAAAACCTTCCTG+AGG | - | chr3_3:12566116-12566135 | Msa0442650:intron | 35.0% | |
| ! | TTTTGGCAGGTTATTCTTGT+TGG | - | chr3_3:12566224-12566243 | Msa0442650:intron | 35.0% |
| ATTCTTGTTGGTCATAGCAT+CGG | - | chr3_3:12566236-12566255 | Msa0442650:CDS | 35.0% | |
| TGCTTGCATTTCTTATGCAT+TGG | - | chr3_3:12566262-12566281 | Msa0442650:CDS | 35.0% | |
| ! | GATTTTCCTTTGTGCTACAA+TGG | - | chr3_3:12566313-12566332 | Msa0442650:CDS | 35.0% |
| TGATCAGCGAAAACATCAAA+CGG | + | chr3_3:12566356-12566375 | None:intergenic | 35.0% | |
| TTAGTTGGCACACTATACAT+TGG | + | chr3_3:12566497-12566516 | None:intergenic | 35.0% | |
| ACTGACATGGAAAGTTTAGT+TGG | + | chr3_3:12566512-12566531 | None:intergenic | 35.0% | |
| GTACGAAATTATGACTGACA+TGG | + | chr3_3:12566525-12566544 | None:intergenic | 35.0% | |
| AAGTCTTAGCGAACAATTCA+GGG | - | chr3_3:12566708-12566727 | Msa0442650:intron | 35.0% | |
| AAAAGGGGAAAATGTTCCTT+TGG | + | chr3_3:12567005-12567024 | None:intergenic | 35.0% | |
| AAATCATCTTTACTGCAGCT+AGG | - | chr3_3:12567078-12567097 | Msa0442650:intron | 35.0% | |
| ! | GCTTTTCTTTACCATTACCA+TGG | + | chr3_3:12567143-12567162 | None:intergenic | 35.0% |
| TCTCAAACATAAATCCTGTC+GGG | + | chr3_3:12567167-12567186 | None:intergenic | 35.0% | |
| TTTGAGAAAGAGCAGATGAA+AGG | - | chr3_3:12567180-12567199 | Msa0442650:CDS | 35.0% | |
| ! | TTTTAATCAATCCCCAGCAA+AGG | - | chr3_3:12567209-12567228 | Msa0442650:intron | 35.0% |
| GAACTCCAAAAATAATTGGC+TGG | - | chr3_3:12568070-12568089 | Msa0442650:intron | 35.0% | |
| TCGTGAAGAATTTGGAAAGT+GGG | + | chr3_3:12568175-12568194 | None:intergenic | 35.0% | |
| TTCGTGAAGAATTTGGAAAG+TGG | + | chr3_3:12568176-12568195 | None:intergenic | 35.0% | |
| ACTCACATGGATAAAACTAC+AGG | + | chr3_3:12568210-12568229 | None:intergenic | 35.0% | |
| !!! | TGTAGTTTTATCCATGTGAG+TGG | - | chr3_3:12568209-12568228 | Msa0442650:intron | 35.0% |
| !!! | GTAGTTTTATCCATGTGAGT+GGG | - | chr3_3:12568210-12568229 | Msa0442650:intron | 35.0% |
| !!! | GGAACTGTTACCTTTTTTAG+AGG | - | chr3_3:12568231-12568250 | Msa0442650:intron | 35.0% |
| ! | GGAAAGAAACCCTCTAAAAA+AGG | + | chr3_3:12568244-12568263 | None:intergenic | 35.0% |
| TTTCTTTCCTTAATCCCGTT+TGG | - | chr3_3:12568255-12568274 | Msa0442650:intron | 35.0% | |
| AAGTAAACCAAACGGGATTA+AGG | + | chr3_3:12568265-12568284 | None:intergenic | 35.0% | |
| ATTTGATCTATTAACTGCGC+TGG | - | chr3_3:12568323-12568342 | Msa0442650:intron | 35.0% | |
| ATAAGACTGACACTACGAAA+TGG | + | chr3_3:12568515-12568534 | None:intergenic | 35.0% | |
| TAGATAACATCCAAAGACGT+CGG | + | chr3_3:12568578-12568597 | None:intergenic | 35.0% | |
| ACTAAGTCTCATTGAAACCA+TGG | + | chr3_3:12568700-12568719 | None:intergenic | 35.0% | |
| TCAATGAGACTTAGTCCAAT+TGG | - | chr3_3:12568705-12568724 | Msa0442650:intron | 35.0% | |
| !! | CCGTTTTTACATTCAAACAC+TGG | - | chr3_3:12568779-12568798 | Msa0442650:intron | 35.0% |
| !! | ATTTTGAAAACTCCTTCAGG+AGG | + | chr3_3:12568855-12568874 | None:intergenic | 35.0% |
| TCAAGAAGCAAAAGAATGGG+TGG | - | chr3_3:12564357-12564376 | Msa0442650:three_prime_UTR | 40.0% | |
| CACTTCAACAACATTCTCAG+AGG | - | chr3_3:12564445-12564464 | Msa0442650:three_prime_UTR | 40.0% | |
| CAACATTCTCAGAGGTTTGA+AGG | - | chr3_3:12564453-12564472 | Msa0442650:three_prime_UTR | 40.0% | |
| ! | TTGTTGACTGGAACAGAATC+AGG | + | chr3_3:12564528-12564547 | None:intergenic | 40.0% |
| TTCTGTTCCAGTCAACAAAC+AGG | - | chr3_3:12564530-12564549 | Msa0442650:CDS | 40.0% | |
| !! | AAAGTGGGTTGTCAGGATTA+TGG | - | chr3_3:12564653-12564672 | Msa0442650:CDS | 40.0% |
| !! | ATCACCATCTATTCTGGAGT+TGG | - | chr3_3:12565232-12565251 | Msa0442650:intron | 40.0% |
| !! | TTTGATACGTTTCAGGTTCC+TGG | - | chr3_3:12565363-12565382 | Msa0442650:intron | 40.0% |
| !! | GTTAGTGTGTGTTGGTTCTA+CGG | + | chr3_3:12565608-12565627 | None:intergenic | 40.0% |
| AGGAGTTAGTTAGTGTGTGT+TGG | + | chr3_3:12565616-12565635 | None:intergenic | 40.0% | |
| !! | TGTGTTGCTTGAACCTAGAA+TGG | - | chr3_3:12565707-12565726 | Msa0442650:intron | 40.0% |
| ! | TTGATCCATGGAGAAGGTTT+TGG | - | chr3_3:12565949-12565968 | Msa0442650:intron | 40.0% |
| GAAGTCCTACTTCTTCTAGA+AGG | + | chr3_3:12566002-12566021 | None:intergenic | 40.0% | |
| CCTGTAAGATCTAATGCAAC+AGG | + | chr3_3:12566027-12566046 | None:intergenic | 40.0% | |
| CCTGTTGCATTAGATCTTAC+AGG | - | chr3_3:12566024-12566043 | Msa0442650:intron | 40.0% | |
| GCATTAGATCTTACAGGATC+TGG | - | chr3_3:12566030-12566049 | Msa0442650:intron | 40.0% | |
| CAGCAACAATGTCACTACAT+TGG | - | chr3_3:12566068-12566087 | Msa0442650:intron | 40.0% | |
| !!! | ATCGCTTTTGAGATCTTGTG+TGG | + | chr3_3:12566296-12566315 | None:intergenic | 40.0% |
| ! | ATCAAACGGCCTTTTACCAT+CGG | + | chr3_3:12566342-12566361 | None:intergenic | 40.0% |
| ! | GTTTGATGTTTTCGCTGATC+AGG | - | chr3_3:12566355-12566374 | Msa0442650:intron | 40.0% |
| AACCGATGTGAAACATGGAA+GGG | + | chr3_3:12566580-12566599 | None:intergenic | 40.0% | |
| TGAACAACCGATGTGAAACA+TGG | + | chr3_3:12566585-12566604 | None:intergenic | 40.0% | |
| GAAGTCTTAGCGAACAATTC+AGG | - | chr3_3:12566707-12566726 | Msa0442650:intron | 40.0% | |
| TACCAAGGCAGATATGTCAT+AGG | + | chr3_3:12566758-12566777 | None:intergenic | 40.0% | |
| TCAAACATAAATCCTGTCGG+GGG | + | chr3_3:12567165-12567184 | None:intergenic | 40.0% | |
| CTCAAACATAAATCCTGTCG+GGG | + | chr3_3:12567166-12567185 | None:intergenic | 40.0% | |
| AAATCCTGCATACCTTTGCT+GGG | + | chr3_3:12567224-12567243 | None:intergenic | 40.0% | |
| TCTAAGAAATGGTTGGATGG+AGG | - | chr3_3:12567399-12567418 | Msa0442650:CDS | 40.0% | |
| CTAAGAAATGGTTGGATGGA+GGG | - | chr3_3:12567400-12567419 | Msa0442650:CDS | 40.0% | |
| TTAAGAGGAAAGCTTGTCTG+TGG | - | chr3_3:12567527-12567546 | Msa0442650:CDS | 40.0% | |
| TAAATCACTAGTAGTGCCAG+TGG | + | chr3_3:12567658-12567677 | None:intergenic | 40.0% | |
| TATATAACATAGGGGCAAGG+CGG | - | chr3_3:12567676-12567695 | Msa0442650:intron | 40.0% | |
| TAATTGGCTGGTATTCAACC+TGG | - | chr3_3:12568082-12568101 | Msa0442650:intron | 40.0% | |
| CACATGGATAAAACTACAGG+AGG | + | chr3_3:12568207-12568226 | None:intergenic | 40.0% | |
| TAACAATCTTCCGACGTCTT+TGG | - | chr3_3:12568565-12568584 | Msa0442650:intron | 40.0% | |
| TTGAATGTAAAAACGGCGAG+CGG | + | chr3_3:12568775-12568794 | None:intergenic | 40.0% | |
| ! | GATTGTGGTTTGGAGAAGAA+TGG | + | chr3_3:12568897-12568916 | None:intergenic | 40.0% |
| TTTGTGGAGAGATTGTGGTT+TGG | + | chr3_3:12568907-12568926 | None:intergenic | 40.0% | |
| ! | TAATTTGGTGAGTTGGGAGA+TGG | + | chr3_3:12569007-12569026 | None:intergenic | 40.0% |
| TCGGAGAGATGGAGAATTTG+TGG | + | chr3_3:12564180-12564199 | None:intergenic | 45.0% | |
| !! | TTTTGGTGGTTTCGGAGAGA+TGG | + | chr3_3:12564191-12564210 | None:intergenic | 45.0% |
| AGAAGCAAAAGAATGGGTGG+TGG | - | chr3_3:12564360-12564379 | Msa0442650:three_prime_UTR | 45.0% | |
| ! | AGCAGAACCTGTTTGTTGAC+TGG | + | chr3_3:12564540-12564559 | None:intergenic | 45.0% |
| !! | GTTTCAGAAAGTGGGTTGTC+AGG | - | chr3_3:12564646-12564665 | Msa0442650:CDS | 45.0% |
| TCCTACACAAGTCTGGAAGT+GGG | + | chr3_3:12565010-12565029 | None:intergenic | 45.0% | |
| ATCCTACACAAGTCTGGAAG+TGG | + | chr3_3:12565011-12565030 | None:intergenic | 45.0% | |
| TTCCAGACTTGTGTAGGATG+AGG | - | chr3_3:12565012-12565031 | Msa0442650:intron | 45.0% | |
| AGAATCTAAGGGGGGCAATT+AGG | - | chr3_3:12565161-12565180 | Msa0442650:intron | 45.0% | |
| GAATCTAAGGGGGGCAATTA+GGG | - | chr3_3:12565162-12565181 | Msa0442650:intron | 45.0% | |
| AGCACCAACTCCAGAATAGA+TGG | + | chr3_3:12565239-12565258 | None:intergenic | 45.0% | |
| TAACCTGCTCTATTCTGTCC+AGG | - | chr3_3:12565885-12565904 | Msa0442650:intron | 45.0% | |
| !! | TCTCTAGAAGTTCTGGATCC+TGG | + | chr3_3:12565906-12565925 | None:intergenic | 45.0% |
| ATGCTCCAAAACCTTCTCCA+TGG | + | chr3_3:12565957-12565976 | None:intergenic | 45.0% | |
| !!! | ATGGAGAAGGTTTTGGAGCA+TGG | - | chr3_3:12565956-12565975 | Msa0442650:intron | 45.0% |
| !!! | AAGGTTTTGGAGCATGGTGT+TGG | - | chr3_3:12565962-12565981 | Msa0442650:intron | 45.0% |
| ! | GTTGCCCTTCTAGAAGAAGT+AGG | - | chr3_3:12565994-12566013 | Msa0442650:intron | 45.0% |
| AAACCTTCCTGAGGACGAAA+AGG | - | chr3_3:12566125-12566144 | Msa0442650:intron | 45.0% | |
| ! | AACTGAACCTTTTCGTCCTC+AGG | + | chr3_3:12566135-12566154 | None:intergenic | 45.0% |
| CAATGGTGACCGATGGTAAA+AGG | - | chr3_3:12566330-12566349 | Msa0442650:CDS | 45.0% | |
| TGCCCTTCCATGTTTCACAT+CGG | - | chr3_3:12566575-12566594 | Msa0442650:intron | 45.0% | |
| CAACCGATGTGAAACATGGA+AGG | + | chr3_3:12566581-12566600 | None:intergenic | 45.0% | |
| TGCCTATGACATATCTGCCT+TGG | - | chr3_3:12566753-12566772 | Msa0442650:intron | 45.0% | |
| AATCCTGCATACCTTTGCTG+GGG | + | chr3_3:12567223-12567242 | None:intergenic | 45.0% | |
| CAAATCCTGCATACCTTTGC+TGG | + | chr3_3:12567225-12567244 | None:intergenic | 45.0% | |
| CATGGAAGATACATGTCCAC+TGG | - | chr3_3:12567639-12567658 | Msa0442650:intron | 45.0% | |
| ATATAACATAGGGGCAAGGC+GGG | - | chr3_3:12567677-12567696 | Msa0442650:intron | 45.0% | |
| AATCACGCACAACTACAGAG+AGG | + | chr3_3:12568538-12568557 | None:intergenic | 45.0% | |
| !! | ACAGGATGTTGCTTTAGCCA+TGG | - | chr3_3:12568680-12568699 | Msa0442650:intron | 45.0% |
| TAGTCCAATTGGTCCACTCA+TGG | - | chr3_3:12568716-12568735 | Msa0442650:intron | 45.0% | |
| TTCTCCATGAGTGGACCAAT+TGG | + | chr3_3:12568723-12568742 | None:intergenic | 45.0% | |
| AAACACAGCTTCTCCATGAG+TGG | + | chr3_3:12568732-12568751 | None:intergenic | 45.0% | |
| CTCTTGGACATCTGGTGAAA+GGG | + | chr3_3:12568814-12568833 | None:intergenic | 45.0% | |
| TCTCTTGGACATCTGGTGAA+AGG | + | chr3_3:12568815-12568834 | None:intergenic | 45.0% | |
| ACAAGCTTCTCTTGGACATC+TGG | + | chr3_3:12568822-12568841 | None:intergenic | 45.0% | |
| AGATGTCCAAGAGAAGCTTG+TGG | - | chr3_3:12568821-12568840 | Msa0442650:intron | 45.0% | |
| GATGTCCAAGAGAAGCTTGT+GGG | - | chr3_3:12568822-12568841 | Msa0442650:intron | 45.0% | |
| ATGTCCAAGAGAAGCTTGTG+GGG | - | chr3_3:12568823-12568842 | Msa0442650:intron | 45.0% | |
| ATCTAACTCATCTCCCAGCT+AGG | + | chr3_3:12569049-12569068 | None:intergenic | 45.0% | |
| !!! | TTTTTAGTTTATTTTTTTAT+AGG | - | chr3_3:12564853-12564872 | Msa0442650:intron | 5.0% |
| !! | ATAAATTATACTTAAATATT+TGG | - | chr3_3:12565674-12565693 | Msa0442650:intron | 5.0% |
| !! | TAAATTATACTTAAATATTT+GGG | - | chr3_3:12565675-12565694 | Msa0442650:intron | 5.0% |
| !! | AGAAATTAATTATAAATTAT+AGG | - | chr3_3:12565821-12565840 | Msa0442650:intron | 5.0% |
| !! | GAAATTAATTATAAATTATA+GGG | - | chr3_3:12565822-12565841 | Msa0442650:intron | 5.0% |
| ! | AGCAAAAGAATGGGTGGTGG+TGG | - | chr3_3:12564363-12564382 | Msa0442650:three_prime_UTR | 50.0% |
| ACAAGTCTGGAAGTGGGGTA+TGG | + | chr3_3:12565004-12565023 | None:intergenic | 50.0% | |
| CCTACACAAGTCTGGAAGTG+GGG | + | chr3_3:12565009-12565028 | None:intergenic | 50.0% | |
| CACCTCATCCTACACAAGTC+TGG | + | chr3_3:12565017-12565036 | None:intergenic | 50.0% | |
| !! | AGTGTGTGTTGGTTCTACGG+TGG | + | chr3_3:12565605-12565624 | None:intergenic | 50.0% |
| GATCCTGGACAGAATAGAGC+AGG | + | chr3_3:12565891-12565910 | None:intergenic | 50.0% | |
| ! | GAACCTTTTCGTCCTCAGGA+AGG | + | chr3_3:12566131-12566150 | None:intergenic | 50.0% |
| ! | CTTGTTGGTCATAGCATCGG+TGG | - | chr3_3:12566239-12566258 | Msa0442650:CDS | 50.0% |
| CGGTCACCATTGTAGCACAA+AGG | + | chr3_3:12566322-12566341 | None:intergenic | 50.0% | |
| TGTGCTACAATGGTGACCGA+TGG | - | chr3_3:12566323-12566342 | Msa0442650:CDS | 50.0% | |
| ! | AATCCCCAGCAAAGGTATGC+AGG | - | chr3_3:12567217-12567236 | Msa0442650:intron | 50.0% |
| TATAACATAGGGGCAAGGCG+GGG | - | chr3_3:12567678-12567697 | Msa0442650:intron | 50.0% | |
| !! | ACGAAGGACATTTTGAGGGG+CGG | + | chr3_3:12567734-12567753 | None:intergenic | 50.0% |
| ! | GGGACGAAGGACATTTTGAG+GGG | + | chr3_3:12567737-12567756 | None:intergenic | 50.0% |
| ! | GGGGACGAAGGACATTTTGA+GGG | + | chr3_3:12567738-12567757 | None:intergenic | 50.0% |
| ! | TGGGGACGAAGGACATTTTG+AGG | + | chr3_3:12567739-12567758 | None:intergenic | 50.0% |
| GGTAACAGTTCCCACTCACA+TGG | + | chr3_3:12568223-12568242 | None:intergenic | 50.0% | |
| !!! | CGAGCGGTGCCATATTTTTC+AGG | + | chr3_3:12568759-12568778 | None:intergenic | 50.0% |
| TGTCCAAGAGAAGCTTGTGG+GGG | - | chr3_3:12568824-12568843 | Msa0442650:intron | 50.0% | |
| TTTCCCCCACAAGCTTCTCT+TGG | + | chr3_3:12568830-12568849 | None:intergenic | 50.0% | |
| TAGAGTTCACATGGCCTAGC+TGG | - | chr3_3:12569032-12569051 | Msa0442650:CDS | 50.0% | |
| AGAGTTCACATGGCCTAGCT+GGG | - | chr3_3:12569033-12569052 | Msa0442650:CDS | 50.0% | |
| !! | GTGGTGGTGGTAGATCACAG+AGG | - | chr3_3:12564376-12564395 | Msa0442650:three_prime_UTR | 55.0% |
| CCCCACTTCCAGACTTGTGT+AGG | - | chr3_3:12565006-12565025 | Msa0442650:intron | 55.0% | |
| GGTAAAGAAAAGCCCCCGAC+AGG | - | chr3_3:12567150-12567169 | Msa0442650:CDS | 55.0% | |
| ATAACATAGGGGCAAGGCGG+GGG | - | chr3_3:12567679-12567698 | Msa0442650:intron | 55.0% | |
| !! | GAAGGACATTTTGAGGGGCG+GGG | + | chr3_3:12567732-12567751 | None:intergenic | 55.0% |
| !! | CGAAGGACATTTTGAGGGGC+GGG | + | chr3_3:12567733-12567752 | None:intergenic | 55.0% |
| GTGGGGGAAAATCCTCCTGA+AGG | - | chr3_3:12568840-12568859 | Msa0442650:intron | 55.0% | |
| GGACATCTGGTGAAAGGGCG+CGG | + | chr3_3:12568809-12568828 | None:intergenic | 60.0% | |
| ! | ATGGTGGGGGATGGGGACGA+AGG | + | chr3_3:12567750-12567769 | None:intergenic | 65.0% |
| TTCGTCCCCATCCCCCACCA+TGG | - | chr3_3:12567749-12567768 | Msa0442650:intron | 65.0% | |
| TCGTCCCCATCCCCCACCAT+GGG | - | chr3_3:12567750-12567769 | Msa0442650:intron | 65.0% | |
| ACATAGGGGCAAGGCGGGGG+TGG | - | chr3_3:12567682-12567701 | Msa0442650:intron | 70.0% | |
| CATAGGGGCAAGGCGGGGGT+GGG | - | chr3_3:12567683-12567702 | Msa0442650:intron | 70.0% | |
| ATAGGGGCAAGGCGGGGGTG+GGG | - | chr3_3:12567684-12567703 | Msa0442650:intron | 70.0% | |
| !! | TGGGGAGTGCTCCCCCTGTC+TGG | - | chr3_3:12567702-12567721 | Msa0442650:intron | 70.0% |
| ! | GCTGCCCATGGTGGGGGATG+GGG | + | chr3_3:12567757-12567776 | None:intergenic | 70.0% |
| ! | CGCTGCCCATGGTGGGGGAT+GGG | + | chr3_3:12567758-12567777 | None:intergenic | 70.0% |
| ! | ACGCTGCCCATGGTGGGGGA+TGG | + | chr3_3:12567759-12567778 | None:intergenic | 70.0% |
| ATCCCCCACCATGGGCAGCG+TGG | - | chr3_3:12567758-12567777 | Msa0442650:intron | 70.0% | |
| TCCCCCACCATGGGCAGCGT+GGG | - | chr3_3:12567759-12567778 | Msa0442650:intron | 70.0% | |
| ACCCACGCTGCCCATGGTGG+GGG | + | chr3_3:12567763-12567782 | None:intergenic | 70.0% | |
| CACCCACGCTGCCCATGGTG+GGG | + | chr3_3:12567764-12567783 | None:intergenic | 70.0% | |
| GCACCCACGCTGCCCATGGT+GGG | + | chr3_3:12567765-12567784 | None:intergenic | 70.0% | |
| GGCGGGGACAGCCAGACAGG+GGG | + | chr3_3:12567716-12567735 | None:intergenic | 75.0% | |
| GGGCGGGGACAGCCAGACAG+GGG | + | chr3_3:12567717-12567736 | None:intergenic | 75.0% | |
| GGGGCGGGGACAGCCAGACA+GGG | + | chr3_3:12567718-12567737 | None:intergenic | 75.0% | |
| AGGGGCGGGGACAGCCAGAC+AGG | + | chr3_3:12567719-12567738 | None:intergenic | 75.0% | |
| GGCACCCACGCTGCCCATGG+TGG | + | chr3_3:12567766-12567785 | None:intergenic | 75.0% | |
| ! | TGGGGCACCCACGCTGCCCA+TGG | + | chr3_3:12567769-12567788 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 12564172 | 12569284 | 12564172 | ID=Msa0442650;Name=Msa0442650 |
| chr3_3 | mRNA | 12564172 | 12569284 | 12564172 | ID=Msa0442650-mRNA-1;Parent=Msa0442650;Name=Msa0442650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=134|1|1|1|1|1|5|328|345 |
| chr3_3 | exon | 12564172 | 12564772 | 12564172 | ID=Msa0442650-mRNA-1:exon:2715;Parent=Msa0442650-mRNA-1 |
| chr3_3 | exon | 12566226 | 12566360 | 12566226 | ID=Msa0442650-mRNA-1:exon:2714;Parent=Msa0442650-mRNA-1 |
| chr3_3 | exon | 12567080 | 12567223 | 12567080 | ID=Msa0442650-mRNA-1:exon:2713;Parent=Msa0442650-mRNA-1 |
| chr3_3 | exon | 12567310 | 12567549 | 12567310 | ID=Msa0442650-mRNA-1:exon:2712;Parent=Msa0442650-mRNA-1 |
| chr3_3 | exon | 12568905 | 12569284 | 12568905 | ID=Msa0442650-mRNA-1:exon:2711;Parent=Msa0442650-mRNA-1 |
| chr3_3 | five_prime_UTR | 12569151 | 12569284 | 12569151 | ID=Msa0442650-mRNA-1:five_prime_utr;Parent=Msa0442650-mRNA-1 |
| chr3_3 | CDS | 12568905 | 12569150 | 12568905 | ID=Msa0442650-mRNA-1:cds;Parent=Msa0442650-mRNA-1 |
| chr3_3 | CDS | 12567310 | 12567549 | 12567310 | ID=Msa0442650-mRNA-1:cds;Parent=Msa0442650-mRNA-1 |
| chr3_3 | CDS | 12567080 | 12567223 | 12567080 | ID=Msa0442650-mRNA-1:cds;Parent=Msa0442650-mRNA-1 |
| chr3_3 | CDS | 12566226 | 12566360 | 12566226 | ID=Msa0442650-mRNA-1:cds;Parent=Msa0442650-mRNA-1 |
| chr3_3 | CDS | 12564500 | 12564772 | 12564500 | ID=Msa0442650-mRNA-1:cds;Parent=Msa0442650-mRNA-1 |
| chr3_3 | three_prime_UTR | 12564172 | 12564499 | 12564172 | ID=Msa0442650-mRNA-1:three_prime_utr;Parent=Msa0442650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
