Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960240 | sp|Q9LVH4|CAR4_ARATH | 66.102 | 177 | 60 | 0 | 1 | 177 | 1 | 177 | 1.93e-84 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960240 | G7KPS8 | 96.045 | 177 | 7 | 0 | 1 | 177 | 1 | 177 | 3.10e-124 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085720 | Msa0960240 | 0.811022 | 8.616302e-51 | -8.615850e-47 |
| Msa0620330 | Msa0960240 | 0.808795 | 2.598764e-50 | -8.615850e-47 |
| Msa0124550 | Msa0960240 | 0.835982 | 1.222024e-56 | -8.615850e-47 |
| Msa0202930 | Msa0960240 | 0.803913 | 2.778188e-49 | -8.615850e-47 |
| Msa0388030 | Msa0960240 | -0.835470 | 1.646589e-56 | -8.615850e-47 |
| Msa0439890 | Msa0960240 | 0.812057 | 5.134787e-51 | -8.615850e-47 |
| Msa0442650 | Msa0960240 | 0.813490 | 2.493039e-51 | -8.615850e-47 |
| Msa0464900 | Msa0960240 | 0.801675 | 8.051451e-49 | -8.615850e-47 |
| Msa0284450 | Msa0960240 | 0.804599 | 1.999105e-49 | -8.615850e-47 |
| Msa0527980 | Msa0960240 | -0.800750 | 1.244602e-48 | -8.615850e-47 |
| Msa0845070 | Msa0960240 | 0.817651 | 2.951991e-52 | -8.615850e-47 |
| Msa0960240 | Msa0966630 | 0.802793 | 4.739041e-49 | -8.615850e-47 |
| Msa0960240 | Msa1001080 | 0.811436 | 7.008558e-51 | -8.615850e-47 |
| Msa0960240 | Msa1048700 | 0.813554 | 2.413106e-51 | -8.615850e-47 |
| Msa0960240 | Msa1070840 | 0.804583 | 2.014891e-49 | -8.615850e-47 |
| Msa0960240 | Msa1113010 | 0.800377 | 1.483057e-48 | -8.615850e-47 |
| Msa0960240 | Msa1118760 | 0.827997 | 1.148490e-54 | -8.615850e-47 |
| Msa0960240 | Msa1135880 | 0.802829 | 4.659425e-49 | -8.615850e-47 |
| Msa0960240 | Msa1229850 | 0.801548 | 8.549914e-49 | -8.615850e-47 |
| Msa0960240 | Msa1286550 | 0.801601 | 8.339034e-49 | -8.615850e-47 |
| Msa0960240 | Msa1314770 | 0.806273 | 8.910712e-50 | -8.615850e-47 |
| Msa0960240 | Msa1366300 | 0.804326 | 2.279354e-49 | -8.615850e-47 |
| Msa0960240 | Msa1407650 | 0.804195 | 2.427092e-49 | -8.615850e-47 |
| Msa0960240 | Msa1433220 | 0.802305 | 5.976511e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960240 | MtrunA17_Chr6g0478401 | 96.045 | 177 | 7 | 0 | 1 | 177 | 1 | 177 | 5.97e-128 | 356 |
| Msa0960240 | MtrunA17_Chr8g0393081 | 73.529 | 170 | 45 | 0 | 8 | 177 | 12 | 181 | 6.64e-94 | 270 |
| Msa0960240 | MtrunA17_Chr3g0111361 | 67.485 | 163 | 53 | 0 | 13 | 175 | 1 | 163 | 2.22e-82 | 241 |
| Msa0960240 | MtrunA17_Chr2g0280981 | 65.644 | 163 | 56 | 0 | 15 | 177 | 2 | 164 | 1.42e-78 | 231 |
| Msa0960240 | MtrunA17_Chr1g0160811 | 56.707 | 164 | 70 | 1 | 15 | 177 | 4 | 167 | 1.81e-66 | 201 |
| Msa0960240 | MtrunA17_Chr4g0043861 | 50.000 | 164 | 82 | 0 | 13 | 176 | 1 | 164 | 3.95e-57 | 177 |
| Msa0960240 | MtrunA17_Chr8g0380381 | 44.375 | 160 | 88 | 1 | 13 | 171 | 85 | 244 | 3.64e-44 | 146 |
| Msa0960240 | MtrunA17_Chr2g0292461 | 42.353 | 170 | 97 | 1 | 3 | 171 | 158 | 327 | 1.42e-40 | 139 |
| Msa0960240 | MtrunA17_Chr8g0352751 | 41.250 | 160 | 93 | 1 | 13 | 171 | 1 | 160 | 4.90e-36 | 123 |
| Msa0960240 | MtrunA17_Chr2g0290631 | 38.854 | 157 | 94 | 2 | 13 | 167 | 1 | 157 | 1.38e-35 | 122 |
| Msa0960240 | MtrunA17_Chr3g0083541 | 38.750 | 160 | 97 | 1 | 13 | 171 | 239 | 398 | 3.36e-31 | 116 |
| Msa0960240 | MtrunA17_Chr1g0156811 | 41.573 | 89 | 47 | 3 | 13 | 96 | 255 | 343 | 1.21e-13 | 68.2 |
| Msa0960240 | MtrunA17_Chr1g0199571 | 40.594 | 101 | 50 | 4 | 1 | 96 | 249 | 344 | 1.45e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960240 | AT3G17980.1 | 66.102 | 177 | 60 | 0 | 1 | 177 | 1 | 177 | 1.96e-85 | 249 |
| Msa0960240 | AT1G73580.1 | 69.461 | 167 | 51 | 0 | 11 | 177 | 2 | 168 | 7.44e-82 | 239 |
| Msa0960240 | AT1G48590.4 | 66.864 | 169 | 55 | 1 | 9 | 177 | 2 | 169 | 8.85e-81 | 237 |
| Msa0960240 | AT1G48590.1 | 66.864 | 169 | 55 | 1 | 9 | 177 | 2 | 169 | 8.85e-81 | 237 |
| Msa0960240 | AT1G48590.2 | 66.864 | 169 | 55 | 1 | 9 | 177 | 33 | 200 | 1.36e-80 | 238 |
| Msa0960240 | AT5G37740.1 | 61.905 | 168 | 61 | 1 | 13 | 177 | 1 | 168 | 3.64e-74 | 220 |
| Msa0960240 | AT1G70810.1 | 61.212 | 165 | 64 | 0 | 13 | 177 | 1 | 165 | 1.73e-71 | 213 |
| Msa0960240 | AT1G66360.1 | 60.366 | 164 | 63 | 1 | 13 | 174 | 1 | 164 | 7.33e-71 | 212 |
| Msa0960240 | AT5G37740.2 | 58.427 | 178 | 61 | 2 | 13 | 177 | 1 | 178 | 1.23e-70 | 212 |
| Msa0960240 | AT1G70790.3 | 61.963 | 163 | 60 | 1 | 17 | 177 | 6 | 168 | 2.15e-69 | 209 |
| Msa0960240 | AT1G70790.2 | 61.963 | 163 | 60 | 1 | 17 | 177 | 6 | 168 | 2.15e-69 | 209 |
| Msa0960240 | AT1G70790.1 | 61.963 | 163 | 60 | 1 | 17 | 177 | 6 | 168 | 2.15e-69 | 209 |
| Msa0960240 | AT2G01540.1 | 58.282 | 163 | 66 | 1 | 17 | 177 | 6 | 168 | 2.79e-67 | 203 |
| Msa0960240 | AT1G23140.1 | 57.407 | 162 | 69 | 0 | 13 | 174 | 1 | 162 | 2.25e-65 | 198 |
| Msa0960240 | AT1G70800.1 | 55.758 | 165 | 73 | 0 | 13 | 177 | 10 | 174 | 7.72e-65 | 197 |
| Msa0960240 | AT1G48590.3 | 52.071 | 169 | 48 | 2 | 9 | 177 | 33 | 168 | 2.12e-56 | 175 |
| Msa0960240 | AT1G70790.4 | 60.000 | 130 | 50 | 1 | 50 | 177 | 2 | 131 | 6.46e-51 | 160 |
| Msa0960240 | AT4G05330.2 | 43.750 | 160 | 89 | 1 | 13 | 171 | 140 | 299 | 2.42e-38 | 133 |
| Msa0960240 | AT5G47710.1 | 40.244 | 164 | 96 | 2 | 13 | 174 | 1 | 164 | 4.24e-38 | 129 |
| Msa0960240 | AT5G47710.2 | 40.244 | 164 | 96 | 2 | 13 | 174 | 1 | 164 | 4.24e-38 | 129 |
| Msa0960240 | AT5G47710.3 | 40.244 | 164 | 96 | 2 | 13 | 174 | 1 | 164 | 4.24e-38 | 129 |
| Msa0960240 | AT5G47710.4 | 40.244 | 164 | 96 | 2 | 13 | 174 | 1 | 164 | 4.24e-38 | 129 |
| Msa0960240 | AT4G05330.3 | 43.750 | 160 | 89 | 1 | 13 | 171 | 175 | 334 | 9.52e-38 | 132 |
| Msa0960240 | AT4G05330.1 | 43.750 | 160 | 89 | 1 | 13 | 171 | 175 | 334 | 9.52e-38 | 132 |
| Msa0960240 | AT4G21160.2 | 42.500 | 160 | 91 | 1 | 13 | 171 | 176 | 335 | 1.31e-36 | 129 |
| Msa0960240 | AT4G21160.3 | 42.500 | 160 | 91 | 1 | 13 | 171 | 176 | 335 | 1.31e-36 | 129 |
| Msa0960240 | AT4G21160.1 | 42.500 | 160 | 91 | 1 | 13 | 171 | 176 | 335 | 1.31e-36 | 129 |
| Msa0960240 | AT4G21160.4 | 42.500 | 160 | 91 | 1 | 13 | 171 | 176 | 335 | 1.31e-36 | 129 |
| Msa0960240 | AT3G07940.1 | 43.125 | 160 | 90 | 1 | 13 | 171 | 224 | 383 | 1.78e-35 | 127 |
| Msa0960240 | AT1G03370.1 | 34.746 | 118 | 67 | 3 | 20 | 132 | 3 | 115 | 1.11e-12 | 65.9 |
| Msa0960240 | AT1G03370.2 | 34.746 | 118 | 67 | 3 | 20 | 132 | 3 | 115 | 1.16e-12 | 65.9 |
| Msa0960240 | AT5G04220.1 | 44.706 | 85 | 42 | 3 | 17 | 96 | 38 | 122 | 1.30e-12 | 65.1 |
| Msa0960240 | AT5G04220.2 | 44.706 | 85 | 42 | 3 | 17 | 96 | 260 | 344 | 1.71e-12 | 65.1 |
| Msa0960240 | AT5G04220.3 | 44.706 | 85 | 42 | 3 | 17 | 96 | 198 | 282 | 1.75e-12 | 65.1 |
| Msa0960240 | AT2G20990.1 | 33.577 | 137 | 73 | 5 | 17 | 140 | 259 | 390 | 5.49e-12 | 63.5 |
| Msa0960240 | AT2G20990.3 | 33.577 | 137 | 73 | 5 | 17 | 140 | 297 | 428 | 6.26e-12 | 63.5 |
| Msa0960240 | AT2G20990.2 | 34.074 | 135 | 68 | 7 | 17 | 136 | 259 | 387 | 3.51e-11 | 61.2 |
Find 54 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTAAATTGTGAATTTA+TGG | 0.046309 | 6_3:-79436228 | None:intergenic |
| AATTAATTATTATTATTATA+TGG | 0.242895 | 6_3:-79436289 | None:intergenic |
| CAATCACTTACCAATGTAAC+TGG | 0.259798 | 6_3:-79437208 | None:intergenic |
| TTATTATGCCTTCAACTATA+TGG | 0.260012 | 6_3:+79438468 | Msa0960240:three_prime_UTR |
| TAATTAAGATTAAGAATAAA+AGG | 0.265011 | 6_3:+79436307 | Msa0960240:five_prime_UTR |
| TTGCACTGGATTGATCTTCC+TGG | 0.299246 | 6_3:+79438409 | Msa0960240:CDS |
| AGAATAAAAGGAAGAAGAAA+TGG | 0.355286 | 6_3:+79436319 | Msa0960240:exon |
| TCTCTGATGGAGAATCTATT+AGG | 0.386056 | 6_3:+79436368 | Msa0960240:CDS |
| ATTGATCTTCCTGGTTCTAA+AGG | 0.412234 | 6_3:+79438418 | Msa0960240:CDS |
| GCAGTCTAAGGATCATATCT+TGG | 0.412690 | 6_3:-79438354 | None:intergenic |
| TACATCTTGATTACAACATA+AGG | 0.417586 | 6_3:-79436455 | None:intergenic |
| ACCAATGTAACTGGGTGATT+AGG | 0.417936 | 6_3:-79437199 | None:intergenic |
| TGGTTGTATCCGCTTGATTA+CGG | 0.424732 | 6_3:-79438272 | None:intergenic |
| ATACATTATACATTACAAAC+TGG | 0.431914 | 6_3:-79438579 | None:intergenic |
| GGCCGGTTACATTCATCCTC+AGG | 0.433830 | 6_3:-79438237 | None:intergenic |
| CCACAAAACCATATAGTTGA+AGG | 0.436431 | 6_3:-79438476 | None:intergenic |
| TACGGTGCCGTTCGCAAGGC+CGG | 0.439472 | 6_3:-79438254 | None:intergenic |
| GATCTATAACAGACAGAGTA+AGG | 0.440032 | 6_3:-79437177 | None:intergenic |
| ATGTTTAGAAATACTCCATC+CGG | 0.446582 | 6_3:+79438630 | Msa0960240:three_prime_UTR |
| TGTAATCAAGATGTATAATC+AGG | 0.457131 | 6_3:+79436463 | Msa0960240:CDS |
| TTTAGCAAAGATGACAAAAT+GGG | 0.458958 | 6_3:+79438178 | Msa0960240:CDS |
| GCAAGGCAGTTATGTTTGCT+TGG | 0.477708 | 6_3:-79438292 | None:intergenic |
| ATAATAAATACAGCTCTCTT+CGG | 0.487354 | 6_3:-79438314 | None:intergenic |
| GCCCTGAGGATGAATGTAAC+CGG | 0.488925 | 6_3:+79438235 | Msa0960240:CDS |
| AAGTGGAAATCAGTTTGCAC+TGG | 0.519685 | 6_3:+79438395 | Msa0960240:CDS |
| ACGTACTATGAATGAATCAA+TGG | 0.527420 | 6_3:-79436132 | None:intergenic |
| TGATTACGGTGCCGTTCGCA+AGG | 0.527930 | 6_3:-79438258 | None:intergenic |
| TGCTTATAAATGTGACCGGA+TGG | 0.532386 | 6_3:-79438645 | None:intergenic |
| CATCCTCAGGGCTTCTATGT+AGG | 0.533202 | 6_3:-79438224 | None:intergenic |
| AGCTGTATTTATTATAGCAA+TGG | 0.541875 | 6_3:+79438322 | Msa0960240:CDS |
| AGATGCGGTATTTGACGCCT+CGG | 0.547337 | 6_3:+79438201 | Msa0960240:CDS |
| CAGGGCTTCTATGTAGGCCG+AGG | 0.548361 | 6_3:-79438218 | None:intergenic |
| TCCTAATCACCCAGTTACAT+TGG | 0.552725 | 6_3:+79437198 | Msa0960240:CDS |
| GCCGGTTACATTCATCCTCA+GGG | 0.558700 | 6_3:-79438236 | None:intergenic |
| AGAATCTATTAGGCCTTCTG+AGG | 0.559791 | 6_3:+79436378 | Msa0960240:CDS |
| AATGTAACCGGCCTTGCGAA+CGG | 0.571626 | 6_3:+79438247 | Msa0960240:CDS |
| GATTATAAACCTTTAGAACC+AGG | 0.577547 | 6_3:-79438427 | None:intergenic |
| GATCCTTAGACTGCAAAATG+TGG | 0.590504 | 6_3:+79438363 | Msa0960240:CDS |
| AAATGTGGAATGTGGTGAAG+TGG | 0.600672 | 6_3:+79438378 | Msa0960240:CDS |
| TACGTACACATCTTTGTCAG+TGG | 0.613958 | 6_3:+79436150 | Msa0960240:five_prime_UTR |
| GCTTCACACGAACCCTCAGA+AGG | 0.617469 | 6_3:-79436391 | None:intergenic |
| GTAAGGTCTTCATTCCACTC+AGG | 0.618175 | 6_3:-79437160 | None:intergenic |
| AAAAGAATGTTAATCCTGAG+TGG | 0.623609 | 6_3:+79437146 | Msa0960240:CDS |
| AGATGACAAAATGGGAGATG+CGG | 0.626598 | 6_3:+79438186 | Msa0960240:CDS |
| ATTTATGGAAAGAAAATGAG+AGG | 0.629207 | 6_3:-79436213 | None:intergenic |
| AAATACAGCTCTCTTCGGCA+AGG | 0.644242 | 6_3:-79438309 | None:intergenic |
| GAATCTATTAGGCCTTCTGA+GGG | 0.645365 | 6_3:+79436379 | Msa0960240:CDS |
| ACGTACACATCTTTGTCAGT+GGG | 0.648473 | 6_3:+79436151 | Msa0960240:five_prime_UTR |
| CTGAGGGTTCGTGTGAAGCG+TGG | 0.662794 | 6_3:+79436395 | Msa0960240:CDS |
| TACGAACATCACGAACAGCA+AGG | 0.662931 | 6_3:-79436424 | None:intergenic |
| AATCACTTACCAATGTAACT+GGG | 0.672409 | 6_3:-79437207 | None:intergenic |
| CGAACGGCACCGTAATCAAG+CGG | 0.692308 | 6_3:+79438263 | Msa0960240:CDS |
| CGGCCTACATAGAAGCCCTG+AGG | 0.718357 | 6_3:+79438221 | Msa0960240:CDS |
| AGACTGCAAAATGTGGAATG+TGG | 0.721570 | 6_3:+79438370 | Msa0960240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTATTATTATTATA+TGG | - | chr6_3:79436292-79436311 | None:intergenic | 0.0% |
| !! | TAAATTAAATTGTGAATTTA+TGG | - | chr6_3:79436231-79436250 | None:intergenic | 10.0% |
| !! | TAATTAAGATTAAGAATAAA+AGG | + | chr6_3:79436307-79436326 | Msa0960240:five_prime_UTR | 10.0% |
| !! | TTTGTTGAAAAAAAATTAAA+GGG | - | chr6_3:79436603-79436622 | None:intergenic | 10.0% |
| !!! | ATTTGTTGAAAAAAAATTAA+AGG | - | chr6_3:79436604-79436623 | None:intergenic | 10.0% |
| !! | TTCAAAAAAATAAAATAAAG+TGG | - | chr6_3:79436667-79436686 | None:intergenic | 10.0% |
| !! | AACAATTATATAATTTAAAC+TGG | + | chr6_3:79437729-79437748 | Msa0960240:intron | 10.0% |
| !! | TTGTTGAAAAAAAATTAAAG+GGG | - | chr6_3:79436602-79436621 | None:intergenic | 15.0% |
| !! | TAATATATTCAATTGAATCA+AGG | + | chr6_3:79436772-79436791 | Msa0960240:intron | 15.0% |
| !! | AATATATTCAATTGAATCAA+GGG | + | chr6_3:79436773-79436792 | Msa0960240:intron | 15.0% |
| !! | TTATAATCAGAAACATTTAA+TGG | - | chr6_3:79437705-79437724 | None:intergenic | 15.0% |
| !! | TTATAATCAGAAACATTTAA+TGG | - | chr6_3:79437705-79437724 | None:intergenic | 15.0% |
| !!! | TTACAAATATTTGACTTAAT+CGG | - | chr6_3:79438001-79438020 | None:intergenic | 15.0% |
| !! | GAATTAACATTAAGAAAAGT+TGG | - | chr6_3:79436573-79436592 | None:intergenic | 20.0% |
| !! | CAAAAATTGTTTAACTGAAA+TGG | - | chr6_3:79437278-79437297 | None:intergenic | 20.0% |
| !! | TGGTAAAAAAATCTAATGAA+AGG | - | chr6_3:79437848-79437867 | None:intergenic | 20.0% |
| !! | AAATATTTGTAATGATCTGA+CGG | + | chr6_3:79438009-79438028 | Msa0960240:intron | 20.0% |
| !! | TTGAATGAACAAATATTGAT+AGG | - | chr6_3:79438092-79438111 | None:intergenic | 20.0% |
| !! | TATTTGTTCATTCAATGTAT+TGG | + | chr6_3:79438097-79438116 | Msa0960240:intron | 20.0% |
| !! | ATACATTATACATTACAAAC+TGG | - | chr6_3:79438582-79438601 | None:intergenic | 20.0% |
| ! | GATGTGCATGAAAAAAAAAA+TGG | - | chr6_3:79436188-79436207 | None:intergenic | 25.0% |
| ! | ATTTATGGAAAGAAAATGAG+AGG | - | chr6_3:79436216-79436235 | None:intergenic | 25.0% |
| ! | AGAATAAAAGGAAGAAGAAA+TGG | + | chr6_3:79436319-79436338 | Msa0960240:exon | 25.0% |
| ! | TACATCTTGATTACAACATA+AGG | - | chr6_3:79436458-79436477 | None:intergenic | 25.0% |
| ! | TGTAATCAAGATGTATAATC+AGG | + | chr6_3:79436463-79436482 | Msa0960240:CDS | 25.0% |
| !! | ATGATGATGATGATGAAAAA+TGG | - | chr6_3:79436517-79436536 | None:intergenic | 25.0% |
| ! | TGAAAAAAAATTAAAGGGGT+TGG | - | chr6_3:79436598-79436617 | None:intergenic | 25.0% |
| ! | CTTCTGATTTATTGAATCAA+GGG | + | chr6_3:79436641-79436660 | Msa0960240:intron | 25.0% |
| ! | TCAATAACAAGAAAATTGAG+TGG | - | chr6_3:79436713-79436732 | None:intergenic | 25.0% |
| !!! | TGTTGACACTTTTTCTATAT+AGG | + | chr6_3:79436912-79436931 | Msa0960240:intron | 25.0% |
| ! | ATTGATGTTGAATGTAACAT+AGG | + | chr6_3:79436983-79437002 | Msa0960240:intron | 25.0% |
| !!! | ACATAGGTTTTAGTTATTGA+AGG | + | chr6_3:79436999-79437018 | Msa0960240:intron | 25.0% |
| !!! | CATAGGTTTTAGTTATTGAA+GGG | + | chr6_3:79437000-79437019 | Msa0960240:intron | 25.0% |
| ! | ATTCAAAGCGATAAAAGAAA+GGG | - | chr6_3:79437592-79437611 | None:intergenic | 25.0% |
| ! | AATCTAATGAAAGGTAAAAC+AGG | - | chr6_3:79437839-79437858 | None:intergenic | 25.0% |
| ! | GTAAAAAATCTTTACACTGA+AGG | + | chr6_3:79438050-79438069 | Msa0960240:intron | 25.0% |
| !! | TTTTAGCAAAGATGACAAAA+TGG | + | chr6_3:79438177-79438196 | Msa0960240:CDS | 25.0% |
| ! | TTTAGCAAAGATGACAAAAT+GGG | + | chr6_3:79438178-79438197 | Msa0960240:CDS | 25.0% |
| ! | ATAATAAATACAGCTCTCTT+CGG | - | chr6_3:79438317-79438336 | None:intergenic | 25.0% |
| ! | AGCTGTATTTATTATAGCAA+TGG | + | chr6_3:79438322-79438341 | Msa0960240:CDS | 25.0% |
| ! | TTATTATGCCTTCAACTATA+TGG | + | chr6_3:79438468-79438487 | Msa0960240:three_prime_UTR | 25.0% |
| ACGTACTATGAATGAATCAA+TGG | - | chr6_3:79436135-79436154 | None:intergenic | 30.0% | |
| !! | AAAAAAAAAATGGTGGTGGT+GGG | - | chr6_3:79436178-79436197 | None:intergenic | 30.0% |
| CATGAAAAAAAAAATGGTGG+TGG | - | chr6_3:79436182-79436201 | None:intergenic | 30.0% | |
| GTGCATGAAAAAAAAAATGG+TGG | - | chr6_3:79436185-79436204 | None:intergenic | 30.0% | |
| !!! | AGAGATTTTTTTGATGCTGA+TGG | - | chr6_3:79436353-79436372 | None:intergenic | 30.0% |
| AGCATCAAAAAAATCTCTGA+TGG | + | chr6_3:79436355-79436374 | Msa0960240:CDS | 30.0% | |
| GCTTCTGATTTATTGAATCA+AGG | + | chr6_3:79436640-79436659 | Msa0960240:intron | 30.0% | |
| TGAAGAAAATGAGTAGAAAC+TGG | + | chr6_3:79436880-79436899 | Msa0960240:intron | 30.0% | |
| CAATATCTAGTATCTCTACT+AGG | - | chr6_3:79437045-79437064 | None:intergenic | 30.0% | |
| AAAAGAATGTTAATCCTGAG+TGG | + | chr6_3:79437146-79437165 | Msa0960240:CDS | 30.0% | |
| AATCACTTACCAATGTAACT+GGG | - | chr6_3:79437210-79437229 | None:intergenic | 30.0% | |
| TGACAACACTGATCTATTTA+TGG | + | chr6_3:79437485-79437504 | Msa0960240:intron | 30.0% | |
| ! | AGTAATGAATTTTGAACCTG+TGG | + | chr6_3:79437546-79437565 | Msa0960240:intron | 30.0% |
| GATAAAAGAAAGGGTTTGAA+AGG | - | chr6_3:79437583-79437602 | None:intergenic | 30.0% | |
| CATTCAAAGCGATAAAAGAA+AGG | - | chr6_3:79437593-79437612 | None:intergenic | 30.0% | |
| ACAGTATAAACATTTGACAC+TGG | - | chr6_3:79437935-79437954 | None:intergenic | 30.0% | |
| !! | GATTATAAACCTTTAGAACC+AGG | - | chr6_3:79438430-79438449 | None:intergenic | 30.0% |
| !!! | CTATATGGTTTTGTGGATTA+TGG | + | chr6_3:79438483-79438502 | Msa0960240:three_prime_UTR | 30.0% |
| ATGTTTAGAAATACTCCATC+CGG | + | chr6_3:79438630-79438649 | Msa0960240:three_prime_UTR | 30.0% | |
| !! | GAAAAAAAAAATGGTGGTGG+TGG | - | chr6_3:79436179-79436198 | None:intergenic | 35.0% |
| TCTCTGATGGAGAATCTATT+AGG | + | chr6_3:79436368-79436387 | Msa0960240:CDS | 35.0% | |
| GATCTATAACAGACAGAGTA+AGG | - | chr6_3:79437180-79437199 | None:intergenic | 35.0% | |
| CAATCACTTACCAATGTAAC+TGG | - | chr6_3:79437211-79437230 | None:intergenic | 35.0% | |
| TATAGCAGTGTACAACATAG+CGG | + | chr6_3:79437336-79437355 | Msa0960240:intron | 35.0% | |
| TAGATCAGTGTTGTCAATTG+CGG | - | chr6_3:79437481-79437500 | None:intergenic | 35.0% | |
| TTTATGGTTCCAATGAAACC+AGG | + | chr6_3:79437501-79437520 | Msa0960240:intron | 35.0% | |
| TCTCAATATCCTGGTTTCAT+TGG | - | chr6_3:79437513-79437532 | None:intergenic | 35.0% | |
| TTGTCCATTCTACTCATTTG+CGG | + | chr6_3:79437624-79437643 | Msa0960240:intron | 35.0% | |
| ! | CTTAACCAGTTTTTCCCTTT+AGG | - | chr6_3:79437666-79437685 | None:intergenic | 35.0% |
| AGCACTCGTTAAAGAAACAA+TGG | - | chr6_3:79437868-79437887 | None:intergenic | 35.0% | |
| CTCAAAAAAATGAGTTCCCT+TGG | - | chr6_3:79437891-79437910 | None:intergenic | 35.0% | |
| CAATGTATTGGATTGCTCAT+TGG | + | chr6_3:79438109-79438128 | Msa0960240:intron | 35.0% | |
| ! | ATTCCACATTTTGCAGTCTA+AGG | - | chr6_3:79438369-79438388 | None:intergenic | 35.0% |
| !! | ATTGATCTTCCTGGTTCTAA+AGG | + | chr6_3:79438418-79438437 | Msa0960240:CDS | 35.0% |
| CCACAAAACCATATAGTTGA+AGG | - | chr6_3:79438479-79438498 | None:intergenic | 35.0% | |
| !! | CCTTCAACTATATGGTTTTG+TGG | + | chr6_3:79438476-79438495 | Msa0960240:three_prime_UTR | 35.0% |
| TACGTACACATCTTTGTCAG+TGG | + | chr6_3:79436150-79436169 | Msa0960240:five_prime_UTR | 40.0% | |
| ACGTACACATCTTTGTCAGT+GGG | + | chr6_3:79436151-79436170 | Msa0960240:five_prime_UTR | 40.0% | |
| AGAATCTATTAGGCCTTCTG+AGG | + | chr6_3:79436378-79436397 | Msa0960240:CDS | 40.0% | |
| GAATCTATTAGGCCTTCTGA+GGG | + | chr6_3:79436379-79436398 | Msa0960240:CDS | 40.0% | |
| TCCTAATCACCCAGTTACAT+TGG | + | chr6_3:79437198-79437217 | Msa0960240:CDS | 40.0% | |
| ACCAATGTAACTGGGTGATT+AGG | - | chr6_3:79437202-79437221 | None:intergenic | 40.0% | |
| TTGTACGACTCTCAATATCC+TGG | - | chr6_3:79437522-79437541 | None:intergenic | 40.0% | |
| AAGACCGCAAATGAGTAGAA+TGG | - | chr6_3:79437631-79437650 | None:intergenic | 40.0% | |
| !! | ATTTGCGGTCTTGATAACGA+GGG | + | chr6_3:79437639-79437658 | Msa0960240:intron | 40.0% |
| !! | TTGATAACGAGGGTCCTAAA+GGG | + | chr6_3:79437649-79437668 | Msa0960240:intron | 40.0% |
| TTTCTTTAACGAGTGCTCCA+AGG | + | chr6_3:79437871-79437890 | Msa0960240:intron | 40.0% | |
| TTCTTTAACGAGTGCTCCAA+GGG | + | chr6_3:79437872-79437891 | Msa0960240:intron | 40.0% | |
| AGATGACAAAATGGGAGATG+CGG | + | chr6_3:79438186-79438205 | Msa0960240:CDS | 40.0% | |
| TGGTTGTATCCGCTTGATTA+CGG | - | chr6_3:79438275-79438294 | None:intergenic | 40.0% | |
| GCAGTCTAAGGATCATATCT+TGG | - | chr6_3:79438357-79438376 | None:intergenic | 40.0% | |
| GATCCTTAGACTGCAAAATG+TGG | + | chr6_3:79438363-79438382 | Msa0960240:CDS | 40.0% | |
| AGACTGCAAAATGTGGAATG+TGG | + | chr6_3:79438370-79438389 | Msa0960240:CDS | 40.0% | |
| AAATGTGGAATGTGGTGAAG+TGG | + | chr6_3:79438378-79438397 | Msa0960240:CDS | 40.0% | |
| AAGTGGAAATCAGTTTGCAC+TGG | + | chr6_3:79438395-79438414 | Msa0960240:CDS | 40.0% | |
| TGCTTATAAATGTGACCGGA+TGG | - | chr6_3:79438648-79438667 | None:intergenic | 40.0% | |
| TACGAACATCACGAACAGCA+AGG | - | chr6_3:79436427-79436446 | None:intergenic | 45.0% | |
| GTAAGGTCTTCATTCCACTC+AGG | - | chr6_3:79437163-79437182 | None:intergenic | 45.0% | |
| GGGTTTGAAAGGTTTGCATG+AGG | - | chr6_3:79437572-79437591 | None:intergenic | 45.0% | |
| !! | CATTTGCGGTCTTGATAACG+AGG | + | chr6_3:79437638-79437657 | Msa0960240:intron | 45.0% |
| !! | CTTGATAACGAGGGTCCTAA+AGG | + | chr6_3:79437648-79437667 | Msa0960240:intron | 45.0% |
| AGGGTCCTAAAGGGAAAAAC+TGG | + | chr6_3:79437658-79437677 | Msa0960240:intron | 45.0% | |
| GGCAGTGTATCAGAACATCT+CGG | - | chr6_3:79437914-79437933 | None:intergenic | 45.0% | |
| GCAAGGCAGTTATGTTTGCT+TGG | - | chr6_3:79438295-79438314 | None:intergenic | 45.0% | |
| AAATACAGCTCTCTTCGGCA+AGG | - | chr6_3:79438312-79438331 | None:intergenic | 45.0% | |
| TTGCACTGGATTGATCTTCC+TGG | + | chr6_3:79438409-79438428 | Msa0960240:CDS | 45.0% | |
| AAAGGTTTGCATGAGGCCAC+AGG | - | chr6_3:79437565-79437584 | None:intergenic | 50.0% | |
| AGATGCGGTATTTGACGCCT+CGG | + | chr6_3:79438201-79438220 | Msa0960240:CDS | 50.0% | |
| CATCCTCAGGGCTTCTATGT+AGG | - | chr6_3:79438227-79438246 | None:intergenic | 50.0% | |
| GCCCTGAGGATGAATGTAAC+CGG | + | chr6_3:79438235-79438254 | Msa0960240:CDS | 50.0% | |
| GCCGGTTACATTCATCCTCA+GGG | - | chr6_3:79438239-79438258 | None:intergenic | 50.0% | |
| AATGTAACCGGCCTTGCGAA+CGG | + | chr6_3:79438247-79438266 | Msa0960240:CDS | 50.0% | |
| GCTTCACACGAACCCTCAGA+AGG | - | chr6_3:79436394-79436413 | None:intergenic | 55.0% | |
| GGCCGGTTACATTCATCCTC+AGG | - | chr6_3:79438240-79438259 | None:intergenic | 55.0% | |
| !! | TGATTACGGTGCCGTTCGCA+AGG | - | chr6_3:79438261-79438280 | None:intergenic | 55.0% |
| CGAACGGCACCGTAATCAAG+CGG | + | chr6_3:79438263-79438282 | Msa0960240:CDS | 55.0% | |
| CTGAGGGTTCGTGTGAAGCG+TGG | + | chr6_3:79436395-79436414 | Msa0960240:CDS | 60.0% | |
| CAGGGCTTCTATGTAGGCCG+AGG | - | chr6_3:79438221-79438240 | None:intergenic | 60.0% | |
| CGGCCTACATAGAAGCCCTG+AGG | + | chr6_3:79438221-79438240 | Msa0960240:CDS | 60.0% | |
| !! | TACGGTGCCGTTCGCAAGGC+CGG | - | chr6_3:79438257-79438276 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 79436116 | 79438670 | 79436116 | ID=Msa0960240;Name=Msa0960240 |
| chr6_3 | mRNA | 79436116 | 79438670 | 79436116 | ID=Msa0960240-mRNA-1;Parent=Msa0960240;Name=Msa0960240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=222|1|1|1|1|1|3|223|177 |
| chr6_3 | exon | 79436116 | 79436484 | 79436116 | ID=Msa0960240-mRNA-1:exon:14103;Parent=Msa0960240-mRNA-1 |
| chr6_3 | exon | 79437124 | 79437219 | 79437124 | ID=Msa0960240-mRNA-1:exon:14104;Parent=Msa0960240-mRNA-1 |
| chr6_3 | exon | 79438157 | 79438670 | 79438157 | ID=Msa0960240-mRNA-1:exon:14105;Parent=Msa0960240-mRNA-1 |
| chr6_3 | five_prime_UTR | 79436116 | 79436337 | 79436116 | ID=Msa0960240-mRNA-1:five_prime_utr;Parent=Msa0960240-mRNA-1 |
| chr6_3 | CDS | 79436338 | 79436484 | 79436338 | ID=Msa0960240-mRNA-1:cds;Parent=Msa0960240-mRNA-1 |
| chr6_3 | CDS | 79437124 | 79437219 | 79437124 | ID=Msa0960240-mRNA-1:cds;Parent=Msa0960240-mRNA-1 |
| chr6_3 | CDS | 79438157 | 79438447 | 79438157 | ID=Msa0960240-mRNA-1:cds;Parent=Msa0960240-mRNA-1 |
| chr6_3 | three_prime_UTR | 79438448 | 79438670 | 79438448 | ID=Msa0960240-mRNA-1:three_prime_utr;Parent=Msa0960240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
